Multiple sequence alignment - TraesCS1B01G196600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G196600 chr1B 100.000 3432 0 0 1 3432 353948624 353945193 0.000000e+00 6338.0
1 TraesCS1B01G196600 chr1B 89.174 351 37 1 1270 1619 77720289 77720639 1.460000e-118 436.0
2 TraesCS1B01G196600 chr1B 87.547 265 29 3 1330 1592 124074480 124074218 1.550000e-78 303.0
3 TraesCS1B01G196600 chr1B 94.444 144 8 0 1675 1818 77720630 77720773 4.460000e-54 222.0
4 TraesCS1B01G196600 chr1A 90.595 1797 79 22 1675 3432 341873153 341871408 0.000000e+00 2300.0
5 TraesCS1B01G196600 chr1A 91.589 1403 70 21 246 1628 341874509 341873135 0.000000e+00 1893.0
6 TraesCS1B01G196600 chr1A 100.000 52 0 0 1624 1675 341016557 341016506 2.820000e-16 97.1
7 TraesCS1B01G196600 chr1D 94.682 1335 48 13 1673 3006 258979349 258980661 0.000000e+00 2050.0
8 TraesCS1B01G196600 chr1D 91.420 1317 40 20 274 1574 258978038 258979297 0.000000e+00 1738.0
9 TraesCS1B01G196600 chr1D 93.506 385 23 2 3002 3386 258980726 258981108 3.840000e-159 571.0
10 TraesCS1B01G196600 chr1D 93.145 248 14 2 29 276 258961086 258961330 9.050000e-96 361.0
11 TraesCS1B01G196600 chr1D 100.000 52 0 0 1624 1675 12786496 12786547 2.820000e-16 97.1
12 TraesCS1B01G196600 chr1D 100.000 30 0 0 1 30 258961026 258961055 4.780000e-04 56.5
13 TraesCS1B01G196600 chr3B 87.222 360 45 1 1270 1628 104584828 104584469 3.190000e-110 409.0
14 TraesCS1B01G196600 chr3B 100.000 50 0 0 1626 1675 690724812 690724861 3.650000e-15 93.5
15 TraesCS1B01G196600 chr5A 87.931 290 18 10 1764 2037 342329534 342329246 3.300000e-85 326.0
16 TraesCS1B01G196600 chr5A 89.600 250 24 2 1330 1577 671854365 671854614 1.990000e-82 316.0
17 TraesCS1B01G196600 chr5A 85.976 164 23 0 1967 2130 685996368 685996205 3.520000e-40 176.0
18 TraesCS1B01G196600 chr4A 89.057 265 26 3 1330 1592 738692920 738693183 3.300000e-85 326.0
19 TraesCS1B01G196600 chr4A 89.600 250 24 2 1330 1577 493269967 493269718 1.990000e-82 316.0
20 TraesCS1B01G196600 chr4A 98.148 54 1 0 1622 1675 38579940 38579993 1.010000e-15 95.3
21 TraesCS1B01G196600 chr4B 88.506 261 29 1 1334 1593 564752613 564752353 7.150000e-82 315.0
22 TraesCS1B01G196600 chr4B 82.184 174 29 2 1708 1880 646974948 646974776 7.670000e-32 148.0
23 TraesCS1B01G196600 chr2A 87.456 287 18 10 1764 2034 605512757 605513041 7.150000e-82 315.0
24 TraesCS1B01G196600 chr2B 87.108 287 20 9 1764 2034 737995248 737995533 3.330000e-80 309.0
25 TraesCS1B01G196600 chr2B 85.714 287 24 9 1764 2034 295697927 295698212 1.560000e-73 287.0
26 TraesCS1B01G196600 chr7A 86.552 290 22 8 1764 2037 682818980 682818692 1.550000e-78 303.0
27 TraesCS1B01G196600 chr7A 100.000 30 0 0 1270 1299 289952877 289952906 4.780000e-04 56.5
28 TraesCS1B01G196600 chr5B 86.207 290 23 9 1764 2037 295931657 295931369 7.200000e-77 298.0
29 TraesCS1B01G196600 chr5B 86.916 107 14 0 1271 1377 163656197 163656091 1.670000e-23 121.0
30 TraesCS1B01G196600 chr7B 86.014 286 24 8 1767 2037 413036744 413036460 3.350000e-75 292.0
31 TraesCS1B01G196600 chr7B 100.000 50 0 0 1623 1672 658481598 658481647 3.650000e-15 93.5
32 TraesCS1B01G196600 chr4D 86.328 256 20 5 1797 2037 217220782 217220527 7.300000e-67 265.0
33 TraesCS1B01G196600 chr4D 92.523 107 8 0 1931 2037 446595793 446595687 1.650000e-33 154.0
34 TraesCS1B01G196600 chr4D 80.791 177 32 2 1705 1880 502578536 502578361 1.660000e-28 137.0
35 TraesCS1B01G196600 chr4D 92.222 90 7 0 1675 1764 505945070 505945159 1.000000e-25 128.0
36 TraesCS1B01G196600 chr6A 95.876 97 4 0 1194 1290 585206274 585206370 1.280000e-34 158.0
37 TraesCS1B01G196600 chr5D 92.523 107 8 0 1931 2037 473055985 473055879 1.650000e-33 154.0
38 TraesCS1B01G196600 chr5D 91.111 90 8 0 1675 1764 532474951 532474862 4.650000e-24 122.0
39 TraesCS1B01G196600 chr5D 88.776 98 10 1 1263 1359 92290828 92290925 6.020000e-23 119.0
40 TraesCS1B01G196600 chr7D 88.776 98 10 1 1263 1359 592034581 592034678 6.020000e-23 119.0
41 TraesCS1B01G196600 chr7D 100.000 51 0 0 1625 1675 593005003 593004953 1.010000e-15 95.3
42 TraesCS1B01G196600 chr6B 100.000 52 0 0 1624 1675 636102158 636102107 2.820000e-16 97.1
43 TraesCS1B01G196600 chr6B 98.113 53 1 0 1623 1675 211637575 211637523 3.650000e-15 93.5
44 TraesCS1B01G196600 chr3A 100.000 52 0 0 1624 1675 732967643 732967592 2.820000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G196600 chr1B 353945193 353948624 3431 True 6338.0 6338 100.000000 1 3432 1 chr1B.!!$R2 3431
1 TraesCS1B01G196600 chr1A 341871408 341874509 3101 True 2096.5 2300 91.092000 246 3432 2 chr1A.!!$R2 3186
2 TraesCS1B01G196600 chr1D 258978038 258981108 3070 False 1453.0 2050 93.202667 274 3386 3 chr1D.!!$F3 3112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.037697 TGCAGTACGAATGAACGGCT 60.038 50.0 0.0 0.0 37.63 5.52 F
1565 1589 0.036732 TGGAGCAGCAGTTCGGATTT 59.963 50.0 0.0 0.0 0.00 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 1684 0.178918 TAAAAAGTTGGGGCAGGGGG 60.179 55.0 0.0 0.0 0.00 5.40 R
2849 2919 0.106708 TGGAATGCCGACTATCCAGC 59.893 55.0 0.0 0.0 37.05 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.911250 TGTGAGGTGATACTAAACTTCTCA 57.089 37.500 0.00 0.00 0.00 3.27
24 25 6.688578 TGTGAGGTGATACTAAACTTCTCAC 58.311 40.000 11.71 11.71 45.68 3.51
32 33 9.303537 GTGATACTAAACTTCTCACCACTTATC 57.696 37.037 0.00 0.00 32.08 1.75
33 34 9.256228 TGATACTAAACTTCTCACCACTTATCT 57.744 33.333 0.00 0.00 0.00 1.98
50 51 9.606631 CCACTTATCTTATATAGATCAAAGCCC 57.393 37.037 0.00 0.00 42.69 5.19
64 65 8.457238 AGATCAAAGCCCATCTATTAGAAAAC 57.543 34.615 0.00 0.00 0.00 2.43
65 66 8.277918 AGATCAAAGCCCATCTATTAGAAAACT 58.722 33.333 0.00 0.00 0.00 2.66
66 67 7.630242 TCAAAGCCCATCTATTAGAAAACTG 57.370 36.000 0.00 0.00 0.00 3.16
67 68 6.095440 TCAAAGCCCATCTATTAGAAAACTGC 59.905 38.462 0.00 0.00 0.00 4.40
68 69 5.379706 AGCCCATCTATTAGAAAACTGCT 57.620 39.130 0.00 0.12 0.00 4.24
69 70 6.500589 AGCCCATCTATTAGAAAACTGCTA 57.499 37.500 0.00 0.00 0.00 3.49
70 71 6.292150 AGCCCATCTATTAGAAAACTGCTAC 58.708 40.000 0.00 0.00 0.00 3.58
71 72 5.177696 GCCCATCTATTAGAAAACTGCTACG 59.822 44.000 0.00 0.00 0.00 3.51
72 73 5.177696 CCCATCTATTAGAAAACTGCTACGC 59.822 44.000 0.00 0.00 0.00 4.42
73 74 5.753438 CCATCTATTAGAAAACTGCTACGCA 59.247 40.000 0.00 0.00 36.92 5.24
82 83 3.351450 TGCTACGCAGACGACAGT 58.649 55.556 0.00 0.00 43.93 3.55
83 84 1.658114 TGCTACGCAGACGACAGTT 59.342 52.632 0.00 0.00 43.93 3.16
84 85 0.663269 TGCTACGCAGACGACAGTTG 60.663 55.000 0.00 0.00 43.93 3.16
85 86 1.945776 GCTACGCAGACGACAGTTGC 61.946 60.000 0.00 0.00 43.93 4.17
86 87 1.344942 CTACGCAGACGACAGTTGCC 61.345 60.000 0.00 0.00 43.93 4.52
87 88 3.767230 CGCAGACGACAGTTGCCG 61.767 66.667 0.00 0.00 43.93 5.69
88 89 2.355837 GCAGACGACAGTTGCCGA 60.356 61.111 0.00 0.00 32.30 5.54
89 90 1.954146 GCAGACGACAGTTGCCGAA 60.954 57.895 0.00 0.00 32.30 4.30
90 91 1.853319 CAGACGACAGTTGCCGAAC 59.147 57.895 0.00 0.00 0.00 3.95
91 92 0.597637 CAGACGACAGTTGCCGAACT 60.598 55.000 0.00 0.00 43.63 3.01
92 93 0.318784 AGACGACAGTTGCCGAACTC 60.319 55.000 0.00 0.00 40.68 3.01
93 94 1.606350 GACGACAGTTGCCGAACTCG 61.606 60.000 0.00 0.00 40.68 4.18
94 95 1.371267 CGACAGTTGCCGAACTCGA 60.371 57.895 0.00 0.00 40.68 4.04
95 96 0.937699 CGACAGTTGCCGAACTCGAA 60.938 55.000 0.00 0.00 40.68 3.71
96 97 0.784778 GACAGTTGCCGAACTCGAAG 59.215 55.000 0.00 0.00 40.68 3.79
97 98 0.104304 ACAGTTGCCGAACTCGAAGT 59.896 50.000 0.00 0.00 40.68 3.01
98 99 1.338973 ACAGTTGCCGAACTCGAAGTA 59.661 47.619 0.00 0.00 40.68 2.24
99 100 2.029290 ACAGTTGCCGAACTCGAAGTAT 60.029 45.455 0.00 0.00 40.68 2.12
100 101 2.345641 CAGTTGCCGAACTCGAAGTATG 59.654 50.000 0.00 0.00 40.68 2.39
101 102 1.060698 GTTGCCGAACTCGAAGTATGC 59.939 52.381 0.00 0.00 43.02 3.14
102 103 0.245266 TGCCGAACTCGAAGTATGCA 59.755 50.000 0.00 0.00 43.02 3.96
103 104 0.645868 GCCGAACTCGAAGTATGCAC 59.354 55.000 0.00 0.00 43.02 4.57
104 105 0.914551 CCGAACTCGAAGTATGCACG 59.085 55.000 0.00 0.00 43.02 5.34
105 106 1.466866 CCGAACTCGAAGTATGCACGA 60.467 52.381 0.00 0.00 43.02 4.35
106 107 2.451132 CGAACTCGAAGTATGCACGAT 58.549 47.619 0.00 0.00 43.02 3.73
107 108 2.214244 CGAACTCGAAGTATGCACGATG 59.786 50.000 0.00 0.00 43.02 3.84
108 109 2.209838 ACTCGAAGTATGCACGATGG 57.790 50.000 0.00 0.00 35.58 3.51
109 110 1.749063 ACTCGAAGTATGCACGATGGA 59.251 47.619 0.00 0.00 35.58 3.41
110 111 2.223595 ACTCGAAGTATGCACGATGGAG 60.224 50.000 0.00 0.00 35.58 3.86
111 112 1.067060 TCGAAGTATGCACGATGGAGG 59.933 52.381 0.00 0.00 0.00 4.30
112 113 1.067060 CGAAGTATGCACGATGGAGGA 59.933 52.381 0.00 0.00 0.00 3.71
113 114 2.288457 CGAAGTATGCACGATGGAGGAT 60.288 50.000 0.00 0.00 0.00 3.24
114 115 3.733337 GAAGTATGCACGATGGAGGATT 58.267 45.455 0.00 0.00 0.00 3.01
115 116 3.845781 AGTATGCACGATGGAGGATTT 57.154 42.857 0.00 0.00 0.00 2.17
116 117 3.470709 AGTATGCACGATGGAGGATTTG 58.529 45.455 0.00 0.00 0.00 2.32
117 118 2.715749 ATGCACGATGGAGGATTTGA 57.284 45.000 0.00 0.00 0.00 2.69
118 119 1.737838 TGCACGATGGAGGATTTGAC 58.262 50.000 0.00 0.00 0.00 3.18
119 120 1.017387 GCACGATGGAGGATTTGACC 58.983 55.000 0.00 0.00 0.00 4.02
120 121 1.407437 GCACGATGGAGGATTTGACCT 60.407 52.381 0.00 0.00 43.64 3.85
121 122 2.941415 GCACGATGGAGGATTTGACCTT 60.941 50.000 0.00 0.00 40.73 3.50
122 123 2.679837 CACGATGGAGGATTTGACCTTG 59.320 50.000 0.00 0.00 40.73 3.61
123 124 2.571653 ACGATGGAGGATTTGACCTTGA 59.428 45.455 0.00 0.00 40.73 3.02
124 125 3.200825 ACGATGGAGGATTTGACCTTGAT 59.799 43.478 0.00 0.00 40.73 2.57
125 126 3.562973 CGATGGAGGATTTGACCTTGATG 59.437 47.826 0.00 0.00 40.73 3.07
126 127 4.530875 GATGGAGGATTTGACCTTGATGT 58.469 43.478 0.00 0.00 40.73 3.06
127 128 4.387026 TGGAGGATTTGACCTTGATGTT 57.613 40.909 0.00 0.00 40.73 2.71
128 129 4.335416 TGGAGGATTTGACCTTGATGTTC 58.665 43.478 0.00 0.00 40.73 3.18
129 130 4.202556 TGGAGGATTTGACCTTGATGTTCA 60.203 41.667 0.00 0.00 40.73 3.18
130 131 4.397417 GGAGGATTTGACCTTGATGTTCAG 59.603 45.833 0.00 0.00 40.73 3.02
131 132 4.338879 AGGATTTGACCTTGATGTTCAGG 58.661 43.478 0.00 0.00 36.86 3.86
132 133 4.043310 AGGATTTGACCTTGATGTTCAGGA 59.957 41.667 0.00 0.00 36.86 3.86
133 134 4.952335 GGATTTGACCTTGATGTTCAGGAT 59.048 41.667 0.00 0.00 0.00 3.24
134 135 5.163581 GGATTTGACCTTGATGTTCAGGATG 60.164 44.000 0.00 0.00 37.54 3.51
135 136 2.715046 TGACCTTGATGTTCAGGATGC 58.285 47.619 0.00 0.00 34.76 3.91
136 137 2.040145 TGACCTTGATGTTCAGGATGCA 59.960 45.455 0.00 0.00 34.76 3.96
137 138 2.421424 GACCTTGATGTTCAGGATGCAC 59.579 50.000 0.00 0.00 34.76 4.57
138 139 1.399440 CCTTGATGTTCAGGATGCACG 59.601 52.381 0.00 0.00 33.97 5.34
139 140 2.349590 CTTGATGTTCAGGATGCACGA 58.650 47.619 0.00 0.00 33.97 4.35
140 141 2.696989 TGATGTTCAGGATGCACGAT 57.303 45.000 0.00 0.00 33.97 3.73
141 142 2.282407 TGATGTTCAGGATGCACGATG 58.718 47.619 0.00 0.00 33.97 3.84
142 143 1.600957 GATGTTCAGGATGCACGATGG 59.399 52.381 0.00 0.00 33.97 3.51
143 144 0.612744 TGTTCAGGATGCACGATGGA 59.387 50.000 0.00 0.00 33.97 3.41
144 145 1.293924 GTTCAGGATGCACGATGGAG 58.706 55.000 0.00 0.00 34.76 3.86
145 146 0.178767 TTCAGGATGCACGATGGAGG 59.821 55.000 0.00 0.00 34.76 4.30
146 147 0.687427 TCAGGATGCACGATGGAGGA 60.687 55.000 0.00 0.00 34.76 3.71
147 148 0.395686 CAGGATGCACGATGGAGGAT 59.604 55.000 0.00 0.00 0.00 3.24
148 149 1.135094 AGGATGCACGATGGAGGATT 58.865 50.000 0.00 0.00 0.00 3.01
149 150 1.492176 AGGATGCACGATGGAGGATTT 59.508 47.619 0.00 0.00 0.00 2.17
150 151 1.605710 GGATGCACGATGGAGGATTTG 59.394 52.381 0.00 0.00 0.00 2.32
151 152 2.564771 GATGCACGATGGAGGATTTGA 58.435 47.619 0.00 0.00 0.00 2.69
152 153 1.737838 TGCACGATGGAGGATTTGAC 58.262 50.000 0.00 0.00 0.00 3.18
153 154 0.652592 GCACGATGGAGGATTTGACG 59.347 55.000 0.00 0.00 0.00 4.35
154 155 2.007049 GCACGATGGAGGATTTGACGT 61.007 52.381 0.00 0.00 0.00 4.34
155 156 2.346803 CACGATGGAGGATTTGACGTT 58.653 47.619 0.00 0.00 0.00 3.99
156 157 2.094258 CACGATGGAGGATTTGACGTTG 59.906 50.000 0.00 0.00 0.00 4.10
157 158 2.028476 ACGATGGAGGATTTGACGTTGA 60.028 45.455 0.00 0.00 0.00 3.18
158 159 3.198068 CGATGGAGGATTTGACGTTGAT 58.802 45.455 0.00 0.00 0.00 2.57
159 160 3.001634 CGATGGAGGATTTGACGTTGATG 59.998 47.826 0.00 0.00 0.00 3.07
160 161 3.417069 TGGAGGATTTGACGTTGATGT 57.583 42.857 0.00 0.00 0.00 3.06
161 162 3.750371 TGGAGGATTTGACGTTGATGTT 58.250 40.909 0.00 0.00 0.00 2.71
162 163 3.751175 TGGAGGATTTGACGTTGATGTTC 59.249 43.478 0.00 0.00 0.00 3.18
163 164 3.751175 GGAGGATTTGACGTTGATGTTCA 59.249 43.478 0.00 0.00 0.00 3.18
164 165 4.142816 GGAGGATTTGACGTTGATGTTCAG 60.143 45.833 0.00 0.00 0.00 3.02
165 166 3.753272 AGGATTTGACGTTGATGTTCAGG 59.247 43.478 0.00 0.00 0.00 3.86
166 167 3.502211 GGATTTGACGTTGATGTTCAGGT 59.498 43.478 0.00 0.00 0.00 4.00
167 168 4.023193 GGATTTGACGTTGATGTTCAGGTT 60.023 41.667 0.00 0.00 0.00 3.50
168 169 4.974368 TTTGACGTTGATGTTCAGGTTT 57.026 36.364 0.00 0.00 0.00 3.27
169 170 3.961477 TGACGTTGATGTTCAGGTTTG 57.039 42.857 0.00 0.00 0.00 2.93
170 171 2.032799 TGACGTTGATGTTCAGGTTTGC 59.967 45.455 0.00 0.00 0.00 3.68
171 172 2.020720 ACGTTGATGTTCAGGTTTGCA 58.979 42.857 0.00 0.00 0.00 4.08
172 173 2.033299 ACGTTGATGTTCAGGTTTGCAG 59.967 45.455 0.00 0.00 0.00 4.41
173 174 2.033299 CGTTGATGTTCAGGTTTGCAGT 59.967 45.455 0.00 0.00 0.00 4.40
174 175 3.249799 CGTTGATGTTCAGGTTTGCAGTA 59.750 43.478 0.00 0.00 0.00 2.74
175 176 4.537015 GTTGATGTTCAGGTTTGCAGTAC 58.463 43.478 0.00 0.00 0.00 2.73
176 177 2.805671 TGATGTTCAGGTTTGCAGTACG 59.194 45.455 0.00 0.00 0.00 3.67
177 178 2.605837 TGTTCAGGTTTGCAGTACGA 57.394 45.000 0.00 0.00 0.00 3.43
178 179 2.907634 TGTTCAGGTTTGCAGTACGAA 58.092 42.857 0.00 0.00 0.00 3.85
179 180 3.472652 TGTTCAGGTTTGCAGTACGAAT 58.527 40.909 0.00 0.00 0.00 3.34
180 181 3.249799 TGTTCAGGTTTGCAGTACGAATG 59.750 43.478 0.00 0.00 0.00 2.67
181 182 3.394674 TCAGGTTTGCAGTACGAATGA 57.605 42.857 0.00 0.00 0.00 2.57
182 183 3.734463 TCAGGTTTGCAGTACGAATGAA 58.266 40.909 0.00 0.00 0.00 2.57
183 184 3.496884 TCAGGTTTGCAGTACGAATGAAC 59.503 43.478 0.00 0.00 0.00 3.18
184 185 2.478894 AGGTTTGCAGTACGAATGAACG 59.521 45.455 0.00 0.00 39.31 3.95
185 186 2.412325 GGTTTGCAGTACGAATGAACGG 60.412 50.000 0.00 0.00 37.61 4.44
186 187 0.793861 TTGCAGTACGAATGAACGGC 59.206 50.000 0.00 0.00 37.33 5.68
187 188 0.037697 TGCAGTACGAATGAACGGCT 60.038 50.000 0.00 0.00 37.63 5.52
188 189 1.076332 GCAGTACGAATGAACGGCTT 58.924 50.000 0.00 0.00 34.52 4.35
189 190 1.201921 GCAGTACGAATGAACGGCTTG 60.202 52.381 0.00 0.00 34.52 4.01
190 191 2.333926 CAGTACGAATGAACGGCTTGA 58.666 47.619 0.00 0.00 37.61 3.02
191 192 2.930040 CAGTACGAATGAACGGCTTGAT 59.070 45.455 0.00 0.00 37.61 2.57
192 193 2.930040 AGTACGAATGAACGGCTTGATG 59.070 45.455 0.00 0.00 37.61 3.07
193 194 1.808411 ACGAATGAACGGCTTGATGT 58.192 45.000 0.00 0.00 37.61 3.06
194 195 2.151202 ACGAATGAACGGCTTGATGTT 58.849 42.857 0.00 0.00 37.61 2.71
195 196 2.095768 ACGAATGAACGGCTTGATGTTG 60.096 45.455 0.00 0.00 37.61 3.33
196 197 2.095768 CGAATGAACGGCTTGATGTTGT 60.096 45.455 0.00 0.00 0.00 3.32
197 198 2.995466 ATGAACGGCTTGATGTTGTG 57.005 45.000 0.00 0.00 0.00 3.33
198 199 0.310543 TGAACGGCTTGATGTTGTGC 59.689 50.000 0.00 0.00 0.00 4.57
199 200 0.725784 GAACGGCTTGATGTTGTGCG 60.726 55.000 0.00 0.00 0.00 5.34
200 201 1.444119 AACGGCTTGATGTTGTGCGT 61.444 50.000 0.00 0.00 0.00 5.24
201 202 1.154413 CGGCTTGATGTTGTGCGTC 60.154 57.895 0.00 0.00 0.00 5.19
202 203 1.210155 GGCTTGATGTTGTGCGTCC 59.790 57.895 0.00 0.00 32.20 4.79
203 204 1.237285 GGCTTGATGTTGTGCGTCCT 61.237 55.000 0.00 0.00 32.20 3.85
204 205 0.166814 GCTTGATGTTGTGCGTCCTC 59.833 55.000 0.00 0.00 32.20 3.71
205 206 0.798776 CTTGATGTTGTGCGTCCTCC 59.201 55.000 0.00 0.00 32.20 4.30
206 207 0.948623 TTGATGTTGTGCGTCCTCCG 60.949 55.000 0.00 0.00 40.40 4.63
207 208 1.080093 GATGTTGTGCGTCCTCCGA 60.080 57.895 0.00 0.00 39.56 4.55
208 209 1.078759 GATGTTGTGCGTCCTCCGAG 61.079 60.000 0.00 0.00 39.56 4.63
209 210 1.532604 ATGTTGTGCGTCCTCCGAGA 61.533 55.000 0.00 0.00 39.56 4.04
210 211 1.006571 GTTGTGCGTCCTCCGAGAA 60.007 57.895 0.00 0.00 39.56 2.87
211 212 0.389948 GTTGTGCGTCCTCCGAGAAT 60.390 55.000 0.00 0.00 39.56 2.40
212 213 0.108804 TTGTGCGTCCTCCGAGAATC 60.109 55.000 0.00 0.00 39.56 2.52
227 228 3.962964 GAGAATCGTTCGAAAGTTGTCG 58.037 45.455 10.88 4.21 42.48 4.35
228 229 3.378339 AGAATCGTTCGAAAGTTGTCGT 58.622 40.909 10.88 0.00 41.80 4.34
229 230 3.181774 AGAATCGTTCGAAAGTTGTCGTG 59.818 43.478 10.88 1.65 41.80 4.35
230 231 1.912001 TCGTTCGAAAGTTGTCGTGT 58.088 45.000 10.88 0.00 41.80 4.49
231 232 1.584761 TCGTTCGAAAGTTGTCGTGTG 59.415 47.619 10.88 1.16 41.80 3.82
232 233 1.322338 CGTTCGAAAGTTGTCGTGTGT 59.678 47.619 0.00 0.00 41.80 3.72
233 234 2.531103 CGTTCGAAAGTTGTCGTGTGTA 59.469 45.455 0.00 0.00 41.80 2.90
234 235 3.180980 CGTTCGAAAGTTGTCGTGTGTAT 59.819 43.478 0.00 0.00 41.80 2.29
235 236 4.379498 CGTTCGAAAGTTGTCGTGTGTATA 59.621 41.667 0.00 0.00 41.80 1.47
236 237 5.441099 CGTTCGAAAGTTGTCGTGTGTATAG 60.441 44.000 0.00 0.00 41.80 1.31
237 238 3.916172 TCGAAAGTTGTCGTGTGTATAGC 59.084 43.478 7.14 0.00 41.80 2.97
238 239 3.671459 CGAAAGTTGTCGTGTGTATAGCA 59.329 43.478 0.00 0.00 36.26 3.49
239 240 4.326278 CGAAAGTTGTCGTGTGTATAGCAT 59.674 41.667 0.00 0.00 36.26 3.79
240 241 5.498700 CGAAAGTTGTCGTGTGTATAGCATC 60.499 44.000 0.00 0.00 36.26 3.91
241 242 3.435566 AGTTGTCGTGTGTATAGCATCG 58.564 45.455 0.00 0.00 0.00 3.84
242 243 3.119602 AGTTGTCGTGTGTATAGCATCGT 60.120 43.478 0.00 0.00 0.00 3.73
243 244 3.497297 TGTCGTGTGTATAGCATCGTT 57.503 42.857 0.00 0.00 0.00 3.85
244 245 3.840468 TGTCGTGTGTATAGCATCGTTT 58.160 40.909 0.00 0.00 0.00 3.60
249 250 4.740205 CGTGTGTATAGCATCGTTTCATCT 59.260 41.667 0.00 0.00 0.00 2.90
297 300 4.447908 GGGACATGGACTCTAGAGGACATA 60.448 50.000 23.50 10.25 31.06 2.29
339 343 8.463930 AAGGAGAAAGACATGTTATTTGTCAA 57.536 30.769 23.82 0.00 44.73 3.18
502 508 1.410517 CATGGACGGATAGTGACTGCT 59.589 52.381 0.00 0.00 0.00 4.24
636 645 4.008539 CGTTTACTGTCTACGGGAGTAC 57.991 50.000 6.69 0.00 46.17 2.73
637 646 3.484229 CGTTTACTGTCTACGGGAGTACG 60.484 52.174 6.69 0.00 46.17 3.67
638 647 2.315925 TACTGTCTACGGGAGTACGG 57.684 55.000 0.00 0.00 46.17 4.02
639 648 0.393537 ACTGTCTACGGGAGTACGGG 60.394 60.000 0.00 0.00 46.17 5.28
640 649 0.107508 CTGTCTACGGGAGTACGGGA 60.108 60.000 0.00 0.00 46.17 5.14
641 650 0.392998 TGTCTACGGGAGTACGGGAC 60.393 60.000 0.00 0.00 46.17 4.46
642 651 1.098129 GTCTACGGGAGTACGGGACC 61.098 65.000 0.00 0.00 46.17 4.46
643 652 1.825622 CTACGGGAGTACGGGACCC 60.826 68.421 0.00 0.00 46.17 4.46
644 653 2.276309 CTACGGGAGTACGGGACCCT 62.276 65.000 9.41 0.00 46.17 4.34
691 700 4.720902 CACACGGCCAGCATCCCA 62.721 66.667 2.24 0.00 0.00 4.37
692 701 4.722700 ACACGGCCAGCATCCCAC 62.723 66.667 2.24 0.00 0.00 4.61
697 706 4.365111 GCCAGCATCCCACCACCA 62.365 66.667 0.00 0.00 0.00 4.17
698 707 2.361610 CCAGCATCCCACCACCAC 60.362 66.667 0.00 0.00 0.00 4.16
699 708 2.747460 CAGCATCCCACCACCACG 60.747 66.667 0.00 0.00 0.00 4.94
700 709 3.249189 AGCATCCCACCACCACGT 61.249 61.111 0.00 0.00 0.00 4.49
796 812 1.588139 CTAGGCTAAACCGCGTCCG 60.588 63.158 4.92 0.00 46.52 4.79
844 860 4.264638 GCCGCCGCGCCATTTATT 62.265 61.111 7.42 0.00 0.00 1.40
981 1002 2.653766 GACAGCTCGCTCGCTAGC 60.654 66.667 4.06 4.06 45.86 3.42
982 1003 4.200283 ACAGCTCGCTCGCTAGCC 62.200 66.667 9.66 0.00 46.68 3.93
1302 1326 2.875485 ACGTGAGTGATCCGTCGG 59.125 61.111 4.39 4.39 46.97 4.79
1363 1387 4.673441 TCCTTCGATTCAACGAGAGATTC 58.327 43.478 0.00 0.00 43.04 2.52
1380 1404 2.273370 TTCGTCATGTCTTACGCTCC 57.727 50.000 0.09 0.00 38.94 4.70
1399 1423 1.332997 CCCGGTACATACTGTCGTCTC 59.667 57.143 0.00 0.00 0.00 3.36
1547 1571 4.504916 CTCGTCGGGCTCAGGCTG 62.505 72.222 8.58 8.58 38.73 4.85
1565 1589 0.036732 TGGAGCAGCAGTTCGGATTT 59.963 50.000 0.00 0.00 0.00 2.17
1619 1653 6.214615 TCCCATTACCTGAACATTCTGAACTA 59.785 38.462 0.00 0.00 0.00 2.24
1621 1655 7.148239 CCCATTACCTGAACATTCTGAACTAAC 60.148 40.741 0.00 0.00 0.00 2.34
1622 1656 7.390440 CCATTACCTGAACATTCTGAACTAACA 59.610 37.037 0.00 0.00 0.00 2.41
1623 1657 8.950210 CATTACCTGAACATTCTGAACTAACAT 58.050 33.333 0.00 0.00 0.00 2.71
1624 1658 8.918202 TTACCTGAACATTCTGAACTAACATT 57.082 30.769 0.00 0.00 0.00 2.71
1625 1659 7.823745 ACCTGAACATTCTGAACTAACATTT 57.176 32.000 0.00 0.00 0.00 2.32
1626 1660 8.237811 ACCTGAACATTCTGAACTAACATTTT 57.762 30.769 0.00 0.00 0.00 1.82
1627 1661 8.695456 ACCTGAACATTCTGAACTAACATTTTT 58.305 29.630 0.00 0.00 0.00 1.94
1649 1683 2.588027 TTTGAAACGAAAGGGGTTGC 57.412 45.000 0.00 0.00 0.00 4.17
1650 1684 0.747852 TTGAAACGAAAGGGGTTGCC 59.252 50.000 0.00 0.00 0.00 4.52
1651 1685 1.110518 TGAAACGAAAGGGGTTGCCC 61.111 55.000 0.00 0.00 44.51 5.36
1667 1701 2.204034 CCCCCTGCCCCAACTTTT 59.796 61.111 0.00 0.00 0.00 2.27
1668 1702 1.461268 CCCCCTGCCCCAACTTTTT 60.461 57.895 0.00 0.00 0.00 1.94
1669 1703 0.178918 CCCCCTGCCCCAACTTTTTA 60.179 55.000 0.00 0.00 0.00 1.52
1670 1704 1.554587 CCCCCTGCCCCAACTTTTTAT 60.555 52.381 0.00 0.00 0.00 1.40
1671 1705 2.265367 CCCCTGCCCCAACTTTTTATT 58.735 47.619 0.00 0.00 0.00 1.40
1675 1709 4.019411 CCCTGCCCCAACTTTTTATTGAAT 60.019 41.667 0.00 0.00 0.00 2.57
1929 1989 3.563808 CAGTTGGTTCTGAAAATCCGTCA 59.436 43.478 0.00 0.00 37.61 4.35
2009 2069 0.389296 TGTTCGTGATCGCGGTCAAT 60.389 50.000 26.00 0.00 36.96 2.57
2078 2138 1.295746 GTTCCTCACGGGGTTCCTC 59.704 63.158 0.00 0.00 35.33 3.71
2090 2150 0.967380 GGTTCCTCCTCGGGTTCGTA 60.967 60.000 0.00 0.00 37.69 3.43
2217 2277 2.675423 CCTCGGTCCTGGTCGTCA 60.675 66.667 10.69 0.00 0.00 4.35
2263 2323 5.537188 ACATCTCTCTTGTTGAGTTGAGTC 58.463 41.667 8.28 0.00 43.13 3.36
2276 2336 1.478916 GTTGAGTCTAGGTGGGCTCTC 59.521 57.143 0.00 0.00 0.00 3.20
2299 2359 0.396435 TTCCGGTTGACTGATGCTGT 59.604 50.000 0.00 0.00 0.00 4.40
2300 2360 0.037326 TCCGGTTGACTGATGCTGTC 60.037 55.000 0.00 0.00 33.83 3.51
2545 2610 5.088730 TGCTATATAACGGATTACACCCCT 58.911 41.667 0.00 0.00 0.00 4.79
2548 2613 2.250921 TAACGGATTACACCCCTGGA 57.749 50.000 0.00 0.00 0.00 3.86
2568 2633 6.238484 CCTGGATTTACTCGATGATTGTTTCC 60.238 42.308 0.00 0.00 0.00 3.13
2579 2644 4.300189 TGATTGTTTCCTTCGGTTGTTG 57.700 40.909 0.00 0.00 0.00 3.33
2582 2647 2.018515 TGTTTCCTTCGGTTGTTGGAC 58.981 47.619 0.00 0.00 0.00 4.02
2591 2656 4.099380 TCGGTTGTTGGACTTGAAAAAC 57.901 40.909 0.00 0.00 0.00 2.43
2611 2676 8.817092 AAAAACGGGGAATATCTTGAATCTTA 57.183 30.769 0.00 0.00 0.00 2.10
2735 2805 4.038271 TGAGATTCCACAAAGCCAAGAT 57.962 40.909 0.00 0.00 0.00 2.40
2788 2858 7.156876 TGGCTTCATGTAGGAAATGTTTTAG 57.843 36.000 1.21 0.00 0.00 1.85
2836 2906 6.529125 GCAAGTGGTAATGAATGATTTCACAG 59.471 38.462 0.00 0.00 44.36 3.66
2845 2915 1.603456 TGATTTCACAGCCAAAGCGA 58.397 45.000 0.00 0.00 46.67 4.93
2846 2916 2.161855 TGATTTCACAGCCAAAGCGAT 58.838 42.857 0.00 0.00 46.67 4.58
2847 2917 2.162208 TGATTTCACAGCCAAAGCGATC 59.838 45.455 0.00 0.00 46.67 3.69
2848 2918 0.881118 TTTCACAGCCAAAGCGATCC 59.119 50.000 0.00 0.00 46.67 3.36
2849 2919 1.298157 TTCACAGCCAAAGCGATCCG 61.298 55.000 0.00 0.00 46.67 4.18
2872 2942 1.603172 GGATAGTCGGCATTCCAGTCG 60.603 57.143 3.61 0.00 38.11 4.18
2875 2945 1.519455 GTCGGCATTCCAGTCGGAG 60.519 63.158 0.00 0.00 44.10 4.63
2876 2946 2.202932 CGGCATTCCAGTCGGAGG 60.203 66.667 0.00 0.00 44.10 4.30
2877 2947 2.721167 CGGCATTCCAGTCGGAGGA 61.721 63.158 0.00 0.00 44.10 3.71
2878 2948 1.144936 GGCATTCCAGTCGGAGGAG 59.855 63.158 0.00 0.00 44.10 3.69
2914 2984 8.025445 AGCAATTCTTAATTTCTTGTACTGCAG 58.975 33.333 13.48 13.48 0.00 4.41
2963 3033 3.483196 CGACAGCACACAAACTTCAAATG 59.517 43.478 0.00 0.00 0.00 2.32
3047 3189 0.592637 CAAAAGACGTGCATGGCAGA 59.407 50.000 15.74 0.00 40.08 4.26
3064 3206 8.571336 GCATGGCAGAAGTTATATTATCTTTGT 58.429 33.333 0.00 0.00 0.00 2.83
3174 3316 5.645067 CACTAAAATCTCTCAATGCACCTCA 59.355 40.000 0.00 0.00 0.00 3.86
3177 3319 1.649321 TCTCTCAATGCACCTCAGGT 58.351 50.000 0.00 0.00 35.62 4.00
3180 3322 0.325933 CTCAATGCACCTCAGGTCCA 59.674 55.000 0.00 0.00 31.02 4.02
3245 3387 0.737715 GGCTGTACTCGTGCTTGAGG 60.738 60.000 9.97 0.00 40.39 3.86
3291 3433 4.103153 ACTTGACATCCCTCTCAAACTCAA 59.897 41.667 0.00 0.00 0.00 3.02
3305 3447 0.689055 ACTCAATGCCAGTCTGCAGA 59.311 50.000 13.74 13.74 45.93 4.26
3403 3545 8.682710 AGCCTGCATATAAATTAAAGAAACGAA 58.317 29.630 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.688578 GTGAGAAGTTTAGTATCACCTCACA 58.311 40.000 0.00 0.00 44.93 3.58
6 7 9.303537 GATAAGTGGTGAGAAGTTTAGTATCAC 57.696 37.037 0.00 0.00 39.59 3.06
7 8 9.256228 AGATAAGTGGTGAGAAGTTTAGTATCA 57.744 33.333 0.00 0.00 0.00 2.15
24 25 9.606631 GGGCTTTGATCTATATAAGATAAGTGG 57.393 37.037 0.00 0.00 45.35 4.00
38 39 9.561069 GTTTTCTAATAGATGGGCTTTGATCTA 57.439 33.333 0.00 0.00 36.00 1.98
39 40 8.277918 AGTTTTCTAATAGATGGGCTTTGATCT 58.722 33.333 0.00 0.00 33.43 2.75
40 41 8.348507 CAGTTTTCTAATAGATGGGCTTTGATC 58.651 37.037 0.00 0.00 0.00 2.92
41 42 7.201857 GCAGTTTTCTAATAGATGGGCTTTGAT 60.202 37.037 0.00 0.00 0.00 2.57
42 43 6.095440 GCAGTTTTCTAATAGATGGGCTTTGA 59.905 38.462 0.00 0.00 0.00 2.69
43 44 6.096001 AGCAGTTTTCTAATAGATGGGCTTTG 59.904 38.462 0.00 0.00 0.00 2.77
44 45 6.190587 AGCAGTTTTCTAATAGATGGGCTTT 58.809 36.000 0.00 0.00 0.00 3.51
45 46 5.760131 AGCAGTTTTCTAATAGATGGGCTT 58.240 37.500 0.00 0.00 0.00 4.35
46 47 5.379706 AGCAGTTTTCTAATAGATGGGCT 57.620 39.130 0.00 0.00 0.00 5.19
47 48 5.177696 CGTAGCAGTTTTCTAATAGATGGGC 59.822 44.000 0.00 0.00 0.00 5.36
48 49 6.771188 CGTAGCAGTTTTCTAATAGATGGG 57.229 41.667 0.00 0.00 0.00 4.00
67 68 1.344942 GGCAACTGTCGTCTGCGTAG 61.345 60.000 0.00 0.00 36.93 3.51
68 69 1.372499 GGCAACTGTCGTCTGCGTA 60.372 57.895 0.00 0.00 36.93 4.42
69 70 2.661866 GGCAACTGTCGTCTGCGT 60.662 61.111 0.00 0.00 36.93 5.24
70 71 3.767230 CGGCAACTGTCGTCTGCG 61.767 66.667 0.00 0.00 38.51 5.18
71 72 1.954146 TTCGGCAACTGTCGTCTGC 60.954 57.895 3.35 0.00 44.53 4.26
72 73 0.597637 AGTTCGGCAACTGTCGTCTG 60.598 55.000 3.35 0.00 41.64 3.51
73 74 0.318784 GAGTTCGGCAACTGTCGTCT 60.319 55.000 3.35 4.05 43.37 4.18
74 75 1.606350 CGAGTTCGGCAACTGTCGTC 61.606 60.000 3.35 0.00 43.37 4.20
75 76 1.660575 CGAGTTCGGCAACTGTCGT 60.661 57.895 3.35 0.00 43.37 4.34
76 77 0.937699 TTCGAGTTCGGCAACTGTCG 60.938 55.000 6.99 0.00 43.37 4.35
77 78 0.784778 CTTCGAGTTCGGCAACTGTC 59.215 55.000 6.99 0.00 43.37 3.51
78 79 0.104304 ACTTCGAGTTCGGCAACTGT 59.896 50.000 6.99 0.00 43.37 3.55
79 80 2.060326 TACTTCGAGTTCGGCAACTG 57.940 50.000 6.99 1.84 43.37 3.16
80 81 2.607187 CATACTTCGAGTTCGGCAACT 58.393 47.619 1.26 2.63 46.21 3.16
81 82 1.060698 GCATACTTCGAGTTCGGCAAC 59.939 52.381 1.26 0.00 40.29 4.17
82 83 1.337354 TGCATACTTCGAGTTCGGCAA 60.337 47.619 1.26 0.00 40.29 4.52
83 84 0.245266 TGCATACTTCGAGTTCGGCA 59.755 50.000 1.26 0.00 40.29 5.69
84 85 0.645868 GTGCATACTTCGAGTTCGGC 59.354 55.000 1.26 0.00 40.29 5.54
85 86 0.914551 CGTGCATACTTCGAGTTCGG 59.085 55.000 1.26 0.00 40.29 4.30
86 87 1.891178 TCGTGCATACTTCGAGTTCG 58.109 50.000 0.00 0.00 41.45 3.95
87 88 2.535984 CCATCGTGCATACTTCGAGTTC 59.464 50.000 2.76 0.00 37.04 3.01
88 89 2.165641 TCCATCGTGCATACTTCGAGTT 59.834 45.455 2.76 0.00 37.04 3.01
89 90 1.749063 TCCATCGTGCATACTTCGAGT 59.251 47.619 2.76 0.00 37.04 4.18
90 91 2.389059 CTCCATCGTGCATACTTCGAG 58.611 52.381 2.76 0.00 37.04 4.04
91 92 1.067060 CCTCCATCGTGCATACTTCGA 59.933 52.381 0.00 0.00 37.96 3.71
92 93 1.067060 TCCTCCATCGTGCATACTTCG 59.933 52.381 0.00 0.00 0.00 3.79
93 94 2.890808 TCCTCCATCGTGCATACTTC 57.109 50.000 0.00 0.00 0.00 3.01
94 95 3.845781 AATCCTCCATCGTGCATACTT 57.154 42.857 0.00 0.00 0.00 2.24
95 96 3.134623 TCAAATCCTCCATCGTGCATACT 59.865 43.478 0.00 0.00 0.00 2.12
96 97 3.248602 GTCAAATCCTCCATCGTGCATAC 59.751 47.826 0.00 0.00 0.00 2.39
97 98 3.466836 GTCAAATCCTCCATCGTGCATA 58.533 45.455 0.00 0.00 0.00 3.14
98 99 2.292267 GTCAAATCCTCCATCGTGCAT 58.708 47.619 0.00 0.00 0.00 3.96
99 100 1.678728 GGTCAAATCCTCCATCGTGCA 60.679 52.381 0.00 0.00 0.00 4.57
100 101 1.017387 GGTCAAATCCTCCATCGTGC 58.983 55.000 0.00 0.00 0.00 5.34
101 102 2.679837 CAAGGTCAAATCCTCCATCGTG 59.320 50.000 0.00 0.00 36.74 4.35
102 103 2.571653 TCAAGGTCAAATCCTCCATCGT 59.428 45.455 0.00 0.00 36.74 3.73
103 104 3.266510 TCAAGGTCAAATCCTCCATCG 57.733 47.619 0.00 0.00 36.74 3.84
104 105 4.530875 ACATCAAGGTCAAATCCTCCATC 58.469 43.478 0.00 0.00 36.74 3.51
105 106 4.598036 ACATCAAGGTCAAATCCTCCAT 57.402 40.909 0.00 0.00 36.74 3.41
106 107 4.202556 TGAACATCAAGGTCAAATCCTCCA 60.203 41.667 0.00 0.00 42.11 3.86
107 108 4.335416 TGAACATCAAGGTCAAATCCTCC 58.665 43.478 0.00 0.00 42.11 4.30
108 109 4.397417 CCTGAACATCAAGGTCAAATCCTC 59.603 45.833 0.00 0.00 44.99 3.71
109 110 4.043310 TCCTGAACATCAAGGTCAAATCCT 59.957 41.667 0.00 0.00 44.99 3.24
110 111 4.335416 TCCTGAACATCAAGGTCAAATCC 58.665 43.478 0.00 0.00 44.99 3.01
111 112 5.678107 GCATCCTGAACATCAAGGTCAAATC 60.678 44.000 0.00 0.00 44.99 2.17
112 113 4.159135 GCATCCTGAACATCAAGGTCAAAT 59.841 41.667 0.00 0.00 44.99 2.32
113 114 3.507233 GCATCCTGAACATCAAGGTCAAA 59.493 43.478 0.00 0.00 44.99 2.69
114 115 3.084039 GCATCCTGAACATCAAGGTCAA 58.916 45.455 0.00 0.00 44.99 3.18
115 116 2.040145 TGCATCCTGAACATCAAGGTCA 59.960 45.455 0.00 0.00 43.06 4.02
116 117 2.421424 GTGCATCCTGAACATCAAGGTC 59.579 50.000 0.00 0.00 0.00 3.85
117 118 2.440409 GTGCATCCTGAACATCAAGGT 58.560 47.619 0.00 0.00 0.00 3.50
118 119 1.399440 CGTGCATCCTGAACATCAAGG 59.601 52.381 0.00 0.00 0.00 3.61
119 120 2.349590 TCGTGCATCCTGAACATCAAG 58.650 47.619 0.00 0.00 0.00 3.02
120 121 2.470983 TCGTGCATCCTGAACATCAA 57.529 45.000 0.00 0.00 0.00 2.57
121 122 2.282407 CATCGTGCATCCTGAACATCA 58.718 47.619 0.00 0.00 0.00 3.07
122 123 1.600957 CCATCGTGCATCCTGAACATC 59.399 52.381 0.00 0.00 0.00 3.06
123 124 1.210234 TCCATCGTGCATCCTGAACAT 59.790 47.619 0.00 0.00 0.00 2.71
124 125 0.612744 TCCATCGTGCATCCTGAACA 59.387 50.000 0.00 0.00 0.00 3.18
125 126 1.293924 CTCCATCGTGCATCCTGAAC 58.706 55.000 0.00 0.00 0.00 3.18
126 127 0.178767 CCTCCATCGTGCATCCTGAA 59.821 55.000 0.00 0.00 0.00 3.02
127 128 0.687427 TCCTCCATCGTGCATCCTGA 60.687 55.000 0.00 0.00 0.00 3.86
128 129 0.395686 ATCCTCCATCGTGCATCCTG 59.604 55.000 0.00 0.00 0.00 3.86
129 130 1.135094 AATCCTCCATCGTGCATCCT 58.865 50.000 0.00 0.00 0.00 3.24
130 131 1.605710 CAAATCCTCCATCGTGCATCC 59.394 52.381 0.00 0.00 0.00 3.51
131 132 2.289002 GTCAAATCCTCCATCGTGCATC 59.711 50.000 0.00 0.00 0.00 3.91
132 133 2.292267 GTCAAATCCTCCATCGTGCAT 58.708 47.619 0.00 0.00 0.00 3.96
133 134 1.737838 GTCAAATCCTCCATCGTGCA 58.262 50.000 0.00 0.00 0.00 4.57
134 135 0.652592 CGTCAAATCCTCCATCGTGC 59.347 55.000 0.00 0.00 0.00 5.34
135 136 2.010145 ACGTCAAATCCTCCATCGTG 57.990 50.000 0.00 0.00 0.00 4.35
136 137 2.028476 TCAACGTCAAATCCTCCATCGT 60.028 45.455 0.00 0.00 0.00 3.73
137 138 2.616960 TCAACGTCAAATCCTCCATCG 58.383 47.619 0.00 0.00 0.00 3.84
138 139 3.941483 ACATCAACGTCAAATCCTCCATC 59.059 43.478 0.00 0.00 0.00 3.51
139 140 3.955471 ACATCAACGTCAAATCCTCCAT 58.045 40.909 0.00 0.00 0.00 3.41
140 141 3.417069 ACATCAACGTCAAATCCTCCA 57.583 42.857 0.00 0.00 0.00 3.86
141 142 3.751175 TGAACATCAACGTCAAATCCTCC 59.249 43.478 0.00 0.00 0.00 4.30
142 143 4.142816 CCTGAACATCAACGTCAAATCCTC 60.143 45.833 0.00 0.00 0.00 3.71
143 144 3.753272 CCTGAACATCAACGTCAAATCCT 59.247 43.478 0.00 0.00 0.00 3.24
144 145 3.502211 ACCTGAACATCAACGTCAAATCC 59.498 43.478 0.00 0.00 0.00 3.01
145 146 4.749245 ACCTGAACATCAACGTCAAATC 57.251 40.909 0.00 0.00 0.00 2.17
146 147 5.280945 CAAACCTGAACATCAACGTCAAAT 58.719 37.500 0.00 0.00 0.00 2.32
147 148 4.667262 CAAACCTGAACATCAACGTCAAA 58.333 39.130 0.00 0.00 0.00 2.69
148 149 3.488384 GCAAACCTGAACATCAACGTCAA 60.488 43.478 0.00 0.00 0.00 3.18
149 150 2.032799 GCAAACCTGAACATCAACGTCA 59.967 45.455 0.00 0.00 0.00 4.35
150 151 2.032799 TGCAAACCTGAACATCAACGTC 59.967 45.455 0.00 0.00 0.00 4.34
151 152 2.020720 TGCAAACCTGAACATCAACGT 58.979 42.857 0.00 0.00 0.00 3.99
152 153 2.033299 ACTGCAAACCTGAACATCAACG 59.967 45.455 0.00 0.00 0.00 4.10
153 154 3.715628 ACTGCAAACCTGAACATCAAC 57.284 42.857 0.00 0.00 0.00 3.18
154 155 3.249799 CGTACTGCAAACCTGAACATCAA 59.750 43.478 0.00 0.00 0.00 2.57
155 156 2.805671 CGTACTGCAAACCTGAACATCA 59.194 45.455 0.00 0.00 0.00 3.07
156 157 3.064207 TCGTACTGCAAACCTGAACATC 58.936 45.455 0.00 0.00 0.00 3.06
157 158 3.120321 TCGTACTGCAAACCTGAACAT 57.880 42.857 0.00 0.00 0.00 2.71
158 159 2.605837 TCGTACTGCAAACCTGAACA 57.394 45.000 0.00 0.00 0.00 3.18
159 160 3.496884 TCATTCGTACTGCAAACCTGAAC 59.503 43.478 0.00 0.00 0.00 3.18
160 161 3.734463 TCATTCGTACTGCAAACCTGAA 58.266 40.909 0.00 0.00 0.00 3.02
161 162 3.394674 TCATTCGTACTGCAAACCTGA 57.605 42.857 0.00 0.00 0.00 3.86
162 163 3.664276 CGTTCATTCGTACTGCAAACCTG 60.664 47.826 0.00 0.00 0.00 4.00
163 164 2.478894 CGTTCATTCGTACTGCAAACCT 59.521 45.455 0.00 0.00 0.00 3.50
164 165 2.412325 CCGTTCATTCGTACTGCAAACC 60.412 50.000 0.00 0.00 0.00 3.27
165 166 2.834689 CCGTTCATTCGTACTGCAAAC 58.165 47.619 0.00 0.00 0.00 2.93
166 167 1.195900 GCCGTTCATTCGTACTGCAAA 59.804 47.619 0.00 0.00 0.00 3.68
167 168 0.793861 GCCGTTCATTCGTACTGCAA 59.206 50.000 0.00 0.00 0.00 4.08
168 169 0.037697 AGCCGTTCATTCGTACTGCA 60.038 50.000 0.00 0.00 0.00 4.41
169 170 1.076332 AAGCCGTTCATTCGTACTGC 58.924 50.000 0.00 0.00 0.00 4.40
170 171 2.333926 TCAAGCCGTTCATTCGTACTG 58.666 47.619 0.00 0.00 0.00 2.74
171 172 2.736144 TCAAGCCGTTCATTCGTACT 57.264 45.000 0.00 0.00 0.00 2.73
172 173 2.671396 ACATCAAGCCGTTCATTCGTAC 59.329 45.455 0.00 0.00 0.00 3.67
173 174 2.967362 ACATCAAGCCGTTCATTCGTA 58.033 42.857 0.00 0.00 0.00 3.43
174 175 1.808411 ACATCAAGCCGTTCATTCGT 58.192 45.000 0.00 0.00 0.00 3.85
175 176 2.095768 ACAACATCAAGCCGTTCATTCG 60.096 45.455 0.00 0.00 0.00 3.34
176 177 3.236816 CACAACATCAAGCCGTTCATTC 58.763 45.455 0.00 0.00 0.00 2.67
177 178 2.607771 GCACAACATCAAGCCGTTCATT 60.608 45.455 0.00 0.00 0.00 2.57
178 179 1.068333 GCACAACATCAAGCCGTTCAT 60.068 47.619 0.00 0.00 0.00 2.57
179 180 0.310543 GCACAACATCAAGCCGTTCA 59.689 50.000 0.00 0.00 0.00 3.18
180 181 0.725784 CGCACAACATCAAGCCGTTC 60.726 55.000 0.00 0.00 0.00 3.95
181 182 1.282570 CGCACAACATCAAGCCGTT 59.717 52.632 0.00 0.00 0.00 4.44
182 183 1.841663 GACGCACAACATCAAGCCGT 61.842 55.000 0.00 0.00 0.00 5.68
183 184 1.154413 GACGCACAACATCAAGCCG 60.154 57.895 0.00 0.00 0.00 5.52
184 185 1.210155 GGACGCACAACATCAAGCC 59.790 57.895 0.00 0.00 0.00 4.35
185 186 0.166814 GAGGACGCACAACATCAAGC 59.833 55.000 0.00 0.00 0.00 4.01
186 187 0.798776 GGAGGACGCACAACATCAAG 59.201 55.000 0.00 0.00 0.00 3.02
187 188 0.948623 CGGAGGACGCACAACATCAA 60.949 55.000 0.00 0.00 34.82 2.57
188 189 1.374125 CGGAGGACGCACAACATCA 60.374 57.895 0.00 0.00 34.82 3.07
189 190 1.078759 CTCGGAGGACGCACAACATC 61.079 60.000 0.00 0.00 43.86 3.06
190 191 1.079819 CTCGGAGGACGCACAACAT 60.080 57.895 0.00 0.00 43.86 2.71
191 192 1.740332 TTCTCGGAGGACGCACAACA 61.740 55.000 4.96 0.00 43.86 3.33
192 193 0.389948 ATTCTCGGAGGACGCACAAC 60.390 55.000 4.96 0.00 43.86 3.32
193 194 0.108804 GATTCTCGGAGGACGCACAA 60.109 55.000 4.96 0.00 43.86 3.33
194 195 1.511305 GATTCTCGGAGGACGCACA 59.489 57.895 4.96 0.00 43.86 4.57
195 196 1.586564 CGATTCTCGGAGGACGCAC 60.587 63.158 4.96 0.00 43.86 5.34
196 197 1.592400 AACGATTCTCGGAGGACGCA 61.592 55.000 4.96 0.00 45.59 5.24
197 198 0.866483 GAACGATTCTCGGAGGACGC 60.866 60.000 4.96 0.00 45.59 5.19
198 199 0.589229 CGAACGATTCTCGGAGGACG 60.589 60.000 4.96 10.71 45.59 4.79
199 200 0.731417 TCGAACGATTCTCGGAGGAC 59.269 55.000 4.96 0.00 45.59 3.85
200 201 1.456296 TTCGAACGATTCTCGGAGGA 58.544 50.000 4.96 0.00 45.59 3.71
201 202 2.186076 CTTTCGAACGATTCTCGGAGG 58.814 52.381 4.96 0.00 45.59 4.30
202 203 2.864968 ACTTTCGAACGATTCTCGGAG 58.135 47.619 8.84 0.00 45.59 4.63
203 204 2.984471 CAACTTTCGAACGATTCTCGGA 59.016 45.455 8.84 0.00 45.59 4.55
204 205 2.729882 ACAACTTTCGAACGATTCTCGG 59.270 45.455 8.84 0.00 45.59 4.63
205 206 3.478283 CGACAACTTTCGAACGATTCTCG 60.478 47.826 8.84 3.97 42.90 4.04
206 207 3.424529 ACGACAACTTTCGAACGATTCTC 59.575 43.478 8.84 0.00 41.78 2.87
207 208 3.181774 CACGACAACTTTCGAACGATTCT 59.818 43.478 8.84 0.00 41.78 2.40
208 209 3.060740 ACACGACAACTTTCGAACGATTC 60.061 43.478 8.84 1.02 41.78 2.52
209 210 2.861935 ACACGACAACTTTCGAACGATT 59.138 40.909 8.84 0.00 41.78 3.34
210 211 2.217847 CACACGACAACTTTCGAACGAT 59.782 45.455 8.84 0.00 41.78 3.73
211 212 1.584761 CACACGACAACTTTCGAACGA 59.415 47.619 8.84 0.00 41.78 3.85
212 213 1.322338 ACACACGACAACTTTCGAACG 59.678 47.619 0.00 0.00 41.78 3.95
213 214 4.703899 ATACACACGACAACTTTCGAAC 57.296 40.909 0.00 0.00 41.78 3.95
214 215 4.383649 GCTATACACACGACAACTTTCGAA 59.616 41.667 0.00 0.00 41.78 3.71
215 216 3.916172 GCTATACACACGACAACTTTCGA 59.084 43.478 0.00 0.00 41.78 3.71
216 217 3.671459 TGCTATACACACGACAACTTTCG 59.329 43.478 0.00 0.00 44.87 3.46
217 218 5.498700 CGATGCTATACACACGACAACTTTC 60.499 44.000 0.00 0.00 34.64 2.62
218 219 4.326278 CGATGCTATACACACGACAACTTT 59.674 41.667 0.00 0.00 34.64 2.66
219 220 3.857665 CGATGCTATACACACGACAACTT 59.142 43.478 0.00 0.00 34.64 2.66
220 221 3.119602 ACGATGCTATACACACGACAACT 60.120 43.478 0.00 0.00 35.99 3.16
221 222 3.176708 ACGATGCTATACACACGACAAC 58.823 45.455 0.00 0.00 35.99 3.32
222 223 3.497297 ACGATGCTATACACACGACAA 57.503 42.857 0.00 0.00 35.99 3.18
223 224 3.497297 AACGATGCTATACACACGACA 57.503 42.857 0.00 0.00 35.99 4.35
224 225 3.855379 TGAAACGATGCTATACACACGAC 59.145 43.478 0.00 0.00 35.99 4.34
225 226 4.099380 TGAAACGATGCTATACACACGA 57.901 40.909 0.00 0.00 35.99 4.35
226 227 4.740205 AGATGAAACGATGCTATACACACG 59.260 41.667 0.00 0.00 37.41 4.49
227 228 7.875316 ATAGATGAAACGATGCTATACACAC 57.125 36.000 0.00 0.00 0.00 3.82
233 234 9.155975 GTGGAATTATAGATGAAACGATGCTAT 57.844 33.333 0.00 0.00 0.00 2.97
234 235 8.147704 TGTGGAATTATAGATGAAACGATGCTA 58.852 33.333 0.00 0.00 0.00 3.49
235 236 6.992123 TGTGGAATTATAGATGAAACGATGCT 59.008 34.615 0.00 0.00 0.00 3.79
236 237 7.189693 TGTGGAATTATAGATGAAACGATGC 57.810 36.000 0.00 0.00 0.00 3.91
237 238 9.817365 GATTGTGGAATTATAGATGAAACGATG 57.183 33.333 0.00 0.00 0.00 3.84
238 239 9.784531 AGATTGTGGAATTATAGATGAAACGAT 57.215 29.630 0.00 0.00 0.00 3.73
239 240 9.261180 GAGATTGTGGAATTATAGATGAAACGA 57.739 33.333 0.00 0.00 0.00 3.85
240 241 9.265901 AGAGATTGTGGAATTATAGATGAAACG 57.734 33.333 0.00 0.00 0.00 3.60
249 250 9.627123 CCCAAAAGTAGAGATTGTGGAATTATA 57.373 33.333 0.00 0.00 0.00 0.98
297 300 1.064166 CCTTCTCCCTGCAACCATCAT 60.064 52.381 0.00 0.00 0.00 2.45
382 386 5.645624 CCGTGTGTTGCCATGAAAAATATA 58.354 37.500 0.00 0.00 0.00 0.86
502 508 2.125952 CTGCACTCGCCATGTCGA 60.126 61.111 0.00 0.00 37.32 4.20
530 536 4.203076 GAGGCGTCGGGCATACGT 62.203 66.667 11.65 0.00 46.16 3.57
585 591 3.340789 GCCGAGCCAGTTTTCGTT 58.659 55.556 0.00 0.00 35.14 3.85
664 673 2.742372 GCCGTGTGCCGAATCTGT 60.742 61.111 0.00 0.00 39.56 3.41
685 694 1.241315 GGAAACGTGGTGGTGGGATG 61.241 60.000 0.00 0.00 0.00 3.51
687 696 2.376165 TGGAAACGTGGTGGTGGGA 61.376 57.895 0.00 0.00 0.00 4.37
689 698 2.190841 GGTGGAAACGTGGTGGTGG 61.191 63.158 0.00 0.00 0.00 4.61
691 700 2.203098 CGGTGGAAACGTGGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
692 701 2.203098 ACGGTGGAAACGTGGTGG 60.203 61.111 0.00 0.00 43.78 4.61
693 702 1.495584 CTGACGGTGGAAACGTGGTG 61.496 60.000 0.00 0.00 45.68 4.17
694 703 1.227438 CTGACGGTGGAAACGTGGT 60.227 57.895 0.00 0.00 45.68 4.16
695 704 1.959226 CCTGACGGTGGAAACGTGG 60.959 63.158 0.00 0.00 45.68 4.94
696 705 2.604174 GCCTGACGGTGGAAACGTG 61.604 63.158 0.00 0.00 45.68 4.49
698 707 3.047877 GGCCTGACGGTGGAAACG 61.048 66.667 0.00 0.00 37.36 3.60
699 708 1.966451 CTGGCCTGACGGTGGAAAC 60.966 63.158 3.32 0.00 0.00 2.78
700 709 2.429930 CTGGCCTGACGGTGGAAA 59.570 61.111 3.32 0.00 0.00 3.13
741 750 3.961838 GACGGGTTGGCATGCCGTA 62.962 63.158 30.87 19.11 39.42 4.02
976 997 3.746409 CCACGACGTACGGGCTAGC 62.746 68.421 21.06 6.04 44.90 3.42
978 999 3.133464 CCCACGACGTACGGGCTA 61.133 66.667 21.06 0.00 44.90 3.93
1028 1049 3.403558 GCGGGGCCTTCTCCTTCT 61.404 66.667 0.84 0.00 0.00 2.85
1302 1326 2.412089 CGAATTGTTGGGAAGACGAGAC 59.588 50.000 0.00 0.00 0.00 3.36
1363 1387 0.866061 CGGGAGCGTAAGACATGACG 60.866 60.000 0.00 0.00 41.97 4.35
1399 1423 1.664321 GCCCAGCTTCTGCAATCTGG 61.664 60.000 13.31 13.31 43.17 3.86
1508 1532 2.749044 AGGCTGAGCATGTTGGCG 60.749 61.111 6.82 0.00 39.27 5.69
1547 1571 0.449388 CAAATCCGAACTGCTGCTCC 59.551 55.000 0.00 0.00 0.00 4.70
1565 1589 1.210931 CGGAGAAGAACGCGTACCA 59.789 57.895 14.46 0.00 0.00 3.25
1628 1662 3.263261 GCAACCCCTTTCGTTTCAAAAA 58.737 40.909 0.00 0.00 0.00 1.94
1629 1663 2.418884 GGCAACCCCTTTCGTTTCAAAA 60.419 45.455 0.00 0.00 0.00 2.44
1630 1664 1.137282 GGCAACCCCTTTCGTTTCAAA 59.863 47.619 0.00 0.00 0.00 2.69
1631 1665 0.747852 GGCAACCCCTTTCGTTTCAA 59.252 50.000 0.00 0.00 0.00 2.69
1632 1666 2.421220 GGCAACCCCTTTCGTTTCA 58.579 52.632 0.00 0.00 0.00 2.69
1650 1684 0.178918 TAAAAAGTTGGGGCAGGGGG 60.179 55.000 0.00 0.00 0.00 5.40
1651 1685 1.951209 ATAAAAAGTTGGGGCAGGGG 58.049 50.000 0.00 0.00 0.00 4.79
1652 1686 2.903135 TCAATAAAAAGTTGGGGCAGGG 59.097 45.455 0.00 0.00 0.00 4.45
1653 1687 4.615588 TTCAATAAAAAGTTGGGGCAGG 57.384 40.909 0.00 0.00 0.00 4.85
1654 1688 6.369615 CAGAATTCAATAAAAAGTTGGGGCAG 59.630 38.462 8.44 0.00 0.00 4.85
1655 1689 6.042552 TCAGAATTCAATAAAAAGTTGGGGCA 59.957 34.615 8.44 0.00 0.00 5.36
1656 1690 6.463360 TCAGAATTCAATAAAAAGTTGGGGC 58.537 36.000 8.44 0.00 0.00 5.80
1657 1691 8.150296 AGTTCAGAATTCAATAAAAAGTTGGGG 58.850 33.333 8.44 0.00 0.00 4.96
1669 1703 8.306761 GGGAACAATGTTAGTTCAGAATTCAAT 58.693 33.333 8.44 0.00 45.45 2.57
1670 1704 7.521423 CGGGAACAATGTTAGTTCAGAATTCAA 60.521 37.037 8.44 0.00 45.45 2.69
1671 1705 6.072728 CGGGAACAATGTTAGTTCAGAATTCA 60.073 38.462 8.44 0.00 45.45 2.57
1675 1709 4.513692 CACGGGAACAATGTTAGTTCAGAA 59.486 41.667 0.00 0.00 45.45 3.02
1929 1989 2.159142 ACGTCGGAAGTGTCAGAAACTT 60.159 45.455 5.59 5.59 40.54 2.66
1986 2046 2.379634 CCGCGATCACGAACAGCAA 61.380 57.895 8.23 0.00 42.66 3.91
2009 2069 2.839632 AGGATGCCGATCGCCAGA 60.840 61.111 10.32 0.00 36.24 3.86
2078 2138 1.139095 GAGCAGTACGAACCCGAGG 59.861 63.158 0.00 0.00 39.50 4.63
2196 2256 3.775654 GACCAGGACCGAGGCCAG 61.776 72.222 5.01 0.00 0.00 4.85
2217 2277 2.112815 GCCGCTTTGCTTACCCGAT 61.113 57.895 0.00 0.00 0.00 4.18
2263 2323 0.741915 GAAGTCGAGAGCCCACCTAG 59.258 60.000 0.00 0.00 0.00 3.02
2276 2336 1.350193 CATCAGTCAACCGGAAGTCG 58.650 55.000 9.46 0.00 38.88 4.18
2299 2359 2.253758 GCGCAGGACAACAGCAAGA 61.254 57.895 0.30 0.00 0.00 3.02
2300 2360 2.253452 GCGCAGGACAACAGCAAG 59.747 61.111 0.30 0.00 0.00 4.01
2470 2530 1.082104 GCCTGTGCGGAAAAGAACG 60.082 57.895 0.00 0.00 33.16 3.95
2530 2595 1.591768 ATCCAGGGGTGTAATCCGTT 58.408 50.000 0.00 0.00 0.00 4.44
2545 2610 6.414732 AGGAAACAATCATCGAGTAAATCCA 58.585 36.000 0.00 0.00 0.00 3.41
2548 2613 7.005062 CGAAGGAAACAATCATCGAGTAAAT 57.995 36.000 0.00 0.00 39.75 1.40
2568 2633 4.364415 TTTTCAAGTCCAACAACCGAAG 57.636 40.909 0.00 0.00 0.00 3.79
2579 2644 4.948004 AGATATTCCCCGTTTTTCAAGTCC 59.052 41.667 0.00 0.00 0.00 3.85
2582 2647 6.509418 TCAAGATATTCCCCGTTTTTCAAG 57.491 37.500 0.00 0.00 0.00 3.02
2591 2656 5.701290 GGTGTAAGATTCAAGATATTCCCCG 59.299 44.000 0.00 0.00 0.00 5.73
2611 2676 1.601759 GTCAGGCACATGCAGGTGT 60.602 57.895 29.89 11.00 44.36 4.16
2735 2805 2.623878 TCTGCACCGACCAGTTTTTA 57.376 45.000 0.00 0.00 0.00 1.52
2788 2858 5.473796 TTTCGGTGCGGAGAAAATAATAC 57.526 39.130 0.00 0.00 33.93 1.89
2792 2862 1.735571 GCTTTCGGTGCGGAGAAAATA 59.264 47.619 2.75 0.00 36.14 1.40
2793 2863 0.521735 GCTTTCGGTGCGGAGAAAAT 59.478 50.000 2.75 0.00 36.14 1.82
2794 2864 0.816018 TGCTTTCGGTGCGGAGAAAA 60.816 50.000 2.75 0.00 36.14 2.29
2798 2868 1.961277 ACTTGCTTTCGGTGCGGAG 60.961 57.895 0.00 0.00 0.00 4.63
2845 2915 1.188219 ATGCCGACTATCCAGCGGAT 61.188 55.000 13.38 13.38 45.40 4.18
2846 2916 1.399744 AATGCCGACTATCCAGCGGA 61.400 55.000 0.00 0.00 41.26 5.54
2847 2917 0.946221 GAATGCCGACTATCCAGCGG 60.946 60.000 0.00 0.00 41.50 5.52
2848 2918 0.946221 GGAATGCCGACTATCCAGCG 60.946 60.000 0.00 0.00 32.08 5.18
2849 2919 0.106708 TGGAATGCCGACTATCCAGC 59.893 55.000 0.00 0.00 37.05 4.85
2851 2921 1.412710 GACTGGAATGCCGACTATCCA 59.587 52.381 0.00 0.00 39.57 3.41
2852 2922 1.603172 CGACTGGAATGCCGACTATCC 60.603 57.143 0.00 0.00 36.79 2.59
2856 2926 1.949847 CTCCGACTGGAATGCCGACT 61.950 60.000 0.00 0.00 45.87 4.18
2857 2927 1.519455 CTCCGACTGGAATGCCGAC 60.519 63.158 0.00 0.00 45.87 4.79
2872 2942 4.550076 ATTGCTGATAGTATGCTCCTCC 57.450 45.455 0.00 0.00 0.00 4.30
2875 2945 7.969536 TTAAGAATTGCTGATAGTATGCTCC 57.030 36.000 0.00 0.00 0.00 4.70
2914 2984 2.278661 GTCTACTACAGCCGCGCC 60.279 66.667 0.00 0.00 0.00 6.53
2963 3033 8.475331 TCATTTTGGAGTTTTCGTATAGACTC 57.525 34.615 0.00 0.00 38.19 3.36
3020 3162 1.222115 GCACGTCTTTTGCGGAGACT 61.222 55.000 10.82 0.00 41.02 3.24
3143 3285 8.963725 TGCATTGAGAGATTTTAGTGATGATTT 58.036 29.630 0.00 0.00 0.00 2.17
3174 3316 2.136026 AGTTCTCCTTGGTTTGGACCT 58.864 47.619 0.00 0.00 46.66 3.85
3231 3373 1.544691 GAACCTCCTCAAGCACGAGTA 59.455 52.381 0.00 0.00 0.00 2.59
3291 3433 1.376942 GTGCTCTGCAGACTGGCAT 60.377 57.895 26.12 0.00 43.97 4.40
3305 3447 4.065110 GGAACTTTCCAGCGTGCT 57.935 55.556 2.93 0.00 46.76 4.40
3403 3545 4.703575 TGCAGAGCTAATTTGCTGATCTTT 59.296 37.500 19.20 0.00 44.17 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.