Multiple sequence alignment - TraesCS1B01G196000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G196000 chr1B 100.000 5535 0 0 1 5535 352394500 352388966 0.000000e+00 10222.0
1 TraesCS1B01G196000 chr1B 85.612 139 20 0 522 660 121737721 121737583 4.470000e-31 147.0
2 TraesCS1B01G196000 chr1D 93.451 1695 63 12 833 2519 260565145 260566799 0.000000e+00 2471.0
3 TraesCS1B01G196000 chr1D 88.949 1285 80 25 3111 4354 260567590 260568853 0.000000e+00 1530.0
4 TraesCS1B01G196000 chr1D 87.690 593 53 13 2520 3103 260566858 260567439 0.000000e+00 673.0
5 TraesCS1B01G196000 chr1D 93.764 449 16 2 4844 5289 260569471 260569910 0.000000e+00 664.0
6 TraesCS1B01G196000 chr1D 89.260 419 23 5 4399 4808 260568990 260569395 6.400000e-139 505.0
7 TraesCS1B01G196000 chr1A 92.617 1693 84 15 846 2519 340014752 340013082 0.000000e+00 2396.0
8 TraesCS1B01G196000 chr1A 95.884 826 30 2 7 829 389069755 389070579 0.000000e+00 1334.0
9 TraesCS1B01G196000 chr1A 86.600 903 69 23 3669 4537 340011824 340010940 0.000000e+00 950.0
10 TraesCS1B01G196000 chr1A 95.464 463 11 5 4842 5298 340010654 340010196 0.000000e+00 730.0
11 TraesCS1B01G196000 chr1A 88.494 591 55 8 2520 3103 340013033 340012449 0.000000e+00 702.0
12 TraesCS1B01G196000 chr1A 88.347 472 26 13 3101 3550 340012306 340011842 1.750000e-149 540.0
13 TraesCS1B01G196000 chr1A 87.783 221 16 4 4595 4808 340010941 340010725 1.190000e-61 248.0
14 TraesCS1B01G196000 chr1A 91.860 86 6 1 4345 4430 516456782 516456698 9.740000e-23 119.0
15 TraesCS1B01G196000 chr1A 100.000 30 0 0 835 864 340014797 340014768 7.750000e-04 56.5
16 TraesCS1B01G196000 chr2B 95.449 835 34 2 6 836 588286854 588286020 0.000000e+00 1328.0
17 TraesCS1B01G196000 chr2B 94.210 829 25 3 4 829 237164053 237163245 0.000000e+00 1243.0
18 TraesCS1B01G196000 chr2B 95.918 245 10 0 5291 5535 6960427 6960183 1.120000e-106 398.0
19 TraesCS1B01G196000 chr2B 93.023 86 4 2 4346 4431 794694552 794694469 2.090000e-24 124.0
20 TraesCS1B01G196000 chr2B 93.023 86 4 2 4346 4431 794803453 794803370 2.090000e-24 124.0
21 TraesCS1B01G196000 chr2B 89.773 88 6 1 4349 4436 762916547 762916463 5.860000e-20 110.0
22 TraesCS1B01G196000 chr7A 95.542 830 33 2 7 833 150878160 150878988 0.000000e+00 1325.0
23 TraesCS1B01G196000 chr7A 90.217 92 7 1 4348 4437 527538090 527538181 9.740000e-23 119.0
24 TraesCS1B01G196000 chr4A 93.245 829 38 8 4 829 5202367 5201554 0.000000e+00 1205.0
25 TraesCS1B01G196000 chr7B 91.947 832 27 8 1 829 750022740 750023534 0.000000e+00 1129.0
26 TraesCS1B01G196000 chr7D 85.903 454 52 10 8 454 558779305 558779753 1.800000e-129 473.0
27 TraesCS1B01G196000 chr7D 89.796 98 6 3 4335 4430 29876471 29876376 7.530000e-24 122.0
28 TraesCS1B01G196000 chr3B 85.120 457 60 6 4 454 749994905 749994451 1.400000e-125 460.0
29 TraesCS1B01G196000 chr3B 95.276 254 10 2 5281 5532 627981202 627981455 8.640000e-108 401.0
30 TraesCS1B01G196000 chr6B 84.735 452 60 7 7 452 478879272 478878824 1.410000e-120 444.0
31 TraesCS1B01G196000 chr6B 95.547 247 9 2 5286 5532 461898476 461898720 1.450000e-105 394.0
32 TraesCS1B01G196000 chr6B 93.750 80 5 0 4351 4430 135505597 135505676 2.710000e-23 121.0
33 TraesCS1B01G196000 chr4B 96.694 242 8 0 5294 5535 507957243 507957002 2.400000e-108 403.0
34 TraesCS1B01G196000 chr4B 95.918 245 10 0 5291 5535 90460790 90460546 1.120000e-106 398.0
35 TraesCS1B01G196000 chr4B 94.163 257 12 3 5282 5535 611414831 611414575 6.720000e-104 388.0
36 TraesCS1B01G196000 chr4B 90.526 95 7 2 4351 4443 12501386 12501292 2.090000e-24 124.0
37 TraesCS1B01G196000 chr5B 96.667 240 8 0 5296 5535 703474864 703474625 3.110000e-107 399.0
38 TraesCS1B01G196000 chr5B 95.565 248 11 0 5288 5535 24503320 24503073 1.120000e-106 398.0
39 TraesCS1B01G196000 chr2D 96.667 240 8 0 5293 5532 555087446 555087685 3.110000e-107 399.0
40 TraesCS1B01G196000 chr2D 91.549 71 4 2 884 954 407959067 407958999 4.560000e-16 97.1
41 TraesCS1B01G196000 chr5D 80.155 388 54 17 449 829 43378505 43378876 9.140000e-68 268.0
42 TraesCS1B01G196000 chr2A 93.023 86 6 0 4346 4431 654916493 654916408 5.820000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G196000 chr1B 352388966 352394500 5534 True 10222.000000 10222 100.000000 1 5535 1 chr1B.!!$R2 5534
1 TraesCS1B01G196000 chr1D 260565145 260569910 4765 False 1168.600000 2471 90.622800 833 5289 5 chr1D.!!$F1 4456
2 TraesCS1B01G196000 chr1A 389069755 389070579 824 False 1334.000000 1334 95.884000 7 829 1 chr1A.!!$F1 822
3 TraesCS1B01G196000 chr1A 340010196 340014797 4601 True 803.214286 2396 91.329286 835 5298 7 chr1A.!!$R2 4463
4 TraesCS1B01G196000 chr2B 588286020 588286854 834 True 1328.000000 1328 95.449000 6 836 1 chr2B.!!$R3 830
5 TraesCS1B01G196000 chr2B 237163245 237164053 808 True 1243.000000 1243 94.210000 4 829 1 chr2B.!!$R2 825
6 TraesCS1B01G196000 chr7A 150878160 150878988 828 False 1325.000000 1325 95.542000 7 833 1 chr7A.!!$F1 826
7 TraesCS1B01G196000 chr4A 5201554 5202367 813 True 1205.000000 1205 93.245000 4 829 1 chr4A.!!$R1 825
8 TraesCS1B01G196000 chr7B 750022740 750023534 794 False 1129.000000 1129 91.947000 1 829 1 chr7B.!!$F1 828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
439 443 2.159517 GCACATGTTCGAAATCTGTCCC 60.160 50.0 0.00 0.00 0.00 4.46 F
1274 1320 1.965754 GCCGCTGGAGGAGAAGATGT 61.966 60.0 0.00 0.00 0.00 3.06 F
2684 2799 0.462581 CCACATCCACATCCCTCGTG 60.463 60.0 0.00 0.00 0.00 4.35 F
2816 2935 0.594602 TGCTTAAAGCTGCACTGCTG 59.405 50.0 1.02 2.86 43.24 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2171 2221 2.102252 TGCTGAGACACACATACACACA 59.898 45.455 0.0 0.0 0.0 3.72 R
2929 3048 0.324943 GAACTGCTGCCCCTGTAGAA 59.675 55.000 0.0 0.0 0.0 2.10 R
3980 4289 0.109597 CTGCAACAACCCGATGAAGC 60.110 55.000 0.0 0.0 0.0 3.86 R
4752 5161 1.061546 AACAAGCTAAACGGAGGGGA 58.938 50.000 0.0 0.0 0.0 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 264 9.076596 CGAAATCTATGAACCTTTTCAAATTCC 57.923 33.333 0.00 0.00 45.01 3.01
273 277 8.891720 CCTTTTCAAATTCCTGATTTTTGTTCA 58.108 29.630 0.00 0.00 35.79 3.18
323 327 9.968870 TTGGTACAGTTTTGTCCAATAAATTAC 57.031 29.630 0.00 0.00 42.39 1.89
372 376 3.446161 TGCGCTGTTACCTATCACTAGTT 59.554 43.478 9.73 0.00 0.00 2.24
439 443 2.159517 GCACATGTTCGAAATCTGTCCC 60.160 50.000 0.00 0.00 0.00 4.46
907 952 3.150335 TCTGCTCTAGCCCAGCCG 61.150 66.667 0.00 0.00 41.18 5.52
924 969 4.459089 GAGCCTTCCGCCGAAGCT 62.459 66.667 9.06 9.58 43.66 3.74
938 983 3.817647 GCCGAAGCTCATCCATAAAGATT 59.182 43.478 0.00 0.00 35.50 2.40
1101 1146 2.421424 GGTTGCTCGCATGATTTCTCTT 59.579 45.455 0.00 0.00 0.00 2.85
1104 1149 4.087510 TGCTCGCATGATTTCTCTTTTG 57.912 40.909 0.00 0.00 0.00 2.44
1112 1157 5.278660 GCATGATTTCTCTTTTGTGTGGAGT 60.279 40.000 0.00 0.00 0.00 3.85
1274 1320 1.965754 GCCGCTGGAGGAGAAGATGT 61.966 60.000 0.00 0.00 0.00 3.06
1319 1365 4.137872 GCTACACCGCGCCCTACA 62.138 66.667 0.00 0.00 0.00 2.74
1444 1494 2.004733 GATACGTGCCAGGTTACCAAC 58.995 52.381 3.51 0.00 0.00 3.77
1468 1518 7.458397 ACAGTATTGTTTACTGAGATGGGAAA 58.542 34.615 17.20 0.00 45.69 3.13
1475 1525 5.825593 TTACTGAGATGGGAAACTGTTCT 57.174 39.130 0.00 0.00 33.92 3.01
1479 1529 4.645535 TGAGATGGGAAACTGTTCTCTTG 58.354 43.478 0.00 0.00 35.04 3.02
1495 1545 5.947228 TCTCTTGGAGCAACATTGTTTAG 57.053 39.130 0.00 0.00 0.00 1.85
1546 1596 3.746492 AGCTGAACGTCATTACTTTGTCC 59.254 43.478 0.00 0.00 0.00 4.02
1587 1637 3.512724 ACATGATTCTTTTGAAGCCAGGG 59.487 43.478 0.00 0.00 43.58 4.45
1789 1839 2.231478 CGCCTTCTAGACTTGACCTTCA 59.769 50.000 0.00 0.00 0.00 3.02
2041 2091 7.284919 TGTTATTTGGGTCTTCTCCTTTTTC 57.715 36.000 0.00 0.00 0.00 2.29
2046 2096 2.489073 GGGTCTTCTCCTTTTTCTGCCA 60.489 50.000 0.00 0.00 0.00 4.92
2240 2290 7.912056 AGAACGATCATTTCTTCAGATTTCA 57.088 32.000 0.00 0.00 28.36 2.69
2242 2292 8.954350 AGAACGATCATTTCTTCAGATTTCAAT 58.046 29.630 0.00 0.00 28.36 2.57
2424 2481 4.021016 ACTGCTCTTCAGAAGTTATTCGGT 60.021 41.667 10.09 4.79 45.72 4.69
2442 2499 2.640184 GGTTATTGCACTACCCAGGTC 58.360 52.381 0.00 0.00 0.00 3.85
2451 2508 3.118408 GCACTACCCAGGTCACATCATTA 60.118 47.826 0.00 0.00 0.00 1.90
2453 2510 5.221641 GCACTACCCAGGTCACATCATTATA 60.222 44.000 0.00 0.00 0.00 0.98
2462 2519 9.573166 CCAGGTCACATCATTATATTTCCTTTA 57.427 33.333 0.00 0.00 0.00 1.85
2513 2570 5.489792 TCTAATCATATCCTGTGGAAGGC 57.510 43.478 0.00 0.00 46.92 4.35
2524 2639 1.210478 TGTGGAAGGCTAGATCTTGGC 59.790 52.381 20.48 20.48 0.00 4.52
2527 2642 1.488393 GGAAGGCTAGATCTTGGCTGT 59.512 52.381 28.64 19.65 40.57 4.40
2549 2664 6.216569 TGTCTTCTTTCACACACTAGCTTAG 58.783 40.000 0.00 0.00 0.00 2.18
2552 2667 7.326547 GTCTTCTTTCACACACTAGCTTAGTAC 59.673 40.741 0.00 0.00 37.23 2.73
2554 2669 4.796038 TTCACACACTAGCTTAGTACCC 57.204 45.455 0.00 0.00 37.23 3.69
2575 2690 2.609984 CGTGCTTTGCCATGGATCAAAA 60.610 45.455 18.40 8.87 32.55 2.44
2579 2694 3.619929 GCTTTGCCATGGATCAAAATCAC 59.380 43.478 18.40 3.94 32.55 3.06
2587 2702 4.747540 TGGATCAAAATCACACTGTTCG 57.252 40.909 0.00 0.00 33.21 3.95
2594 2709 7.433708 TCAAAATCACACTGTTCGAACATAT 57.566 32.000 29.79 18.74 38.41 1.78
2598 2713 3.679502 TCACACTGTTCGAACATATGCTG 59.320 43.478 29.79 24.89 38.41 4.41
2602 2717 6.035975 CACACTGTTCGAACATATGCTGATTA 59.964 38.462 29.79 4.00 38.41 1.75
2603 2718 6.763135 ACACTGTTCGAACATATGCTGATTAT 59.237 34.615 29.79 11.41 38.41 1.28
2616 2731 3.181452 TGCTGATTATGCTATGCACTCCA 60.181 43.478 0.00 0.00 43.04 3.86
2649 2764 2.425312 CAGTCACTACATTCTCGCCTCT 59.575 50.000 0.00 0.00 0.00 3.69
2663 2778 2.094182 TCGCCTCTAGTCAATTGTCCAC 60.094 50.000 5.13 0.00 0.00 4.02
2682 2797 1.524621 GCCACATCCACATCCCTCG 60.525 63.158 0.00 0.00 0.00 4.63
2684 2799 0.462581 CCACATCCACATCCCTCGTG 60.463 60.000 0.00 0.00 0.00 4.35
2781 2900 3.054802 AGCTATGTCCTTTTAGCAGCAGT 60.055 43.478 0.00 0.00 42.62 4.40
2786 2905 2.485814 GTCCTTTTAGCAGCAGTTCCTG 59.514 50.000 0.00 0.00 35.93 3.86
2816 2935 0.594602 TGCTTAAAGCTGCACTGCTG 59.405 50.000 1.02 2.86 43.24 4.41
2821 2940 1.835494 AAAGCTGCACTGCTGATCAT 58.165 45.000 11.81 0.00 43.24 2.45
2872 2991 8.173542 TCTAAAAACTGAAGAAAACATACCCC 57.826 34.615 0.00 0.00 0.00 4.95
2907 3026 2.414161 GCACCAAAAAGCGATCACCTAC 60.414 50.000 0.00 0.00 0.00 3.18
2909 3028 3.252215 CACCAAAAAGCGATCACCTACAA 59.748 43.478 0.00 0.00 0.00 2.41
2929 3048 5.546526 ACAATTGACCAACAACACAAGTTT 58.453 33.333 13.59 0.00 41.52 2.66
2936 3055 5.949735 ACCAACAACACAAGTTTTCTACAG 58.050 37.500 0.00 0.00 35.28 2.74
2986 3105 3.625938 GCTGCAAGATTTAGCATAGCAC 58.374 45.455 0.00 0.00 40.42 4.40
2999 3119 8.519492 TTTAGCATAGCACTTGAATTTTGAAC 57.481 30.769 0.00 0.00 0.00 3.18
3002 3122 5.567423 GCATAGCACTTGAATTTTGAACCCT 60.567 40.000 0.00 0.00 0.00 4.34
3067 3189 7.212274 TCCAAGTTTACTGTAGGTGAAGTAAC 58.788 38.462 0.00 0.00 38.32 2.50
3070 3192 7.128234 AGTTTACTGTAGGTGAAGTAACCAA 57.872 36.000 0.00 0.00 43.20 3.67
3079 3201 6.681729 AGGTGAAGTAACCAAGTCTGATAA 57.318 37.500 0.00 0.00 43.20 1.75
3080 3202 7.259088 AGGTGAAGTAACCAAGTCTGATAAT 57.741 36.000 0.00 0.00 43.20 1.28
3081 3203 7.106239 AGGTGAAGTAACCAAGTCTGATAATG 58.894 38.462 0.00 0.00 43.20 1.90
3082 3204 6.183360 GGTGAAGTAACCAAGTCTGATAATGC 60.183 42.308 0.00 0.00 40.22 3.56
3083 3205 5.580691 TGAAGTAACCAAGTCTGATAATGCG 59.419 40.000 0.00 0.00 0.00 4.73
3087 3209 3.525537 ACCAAGTCTGATAATGCGAGTG 58.474 45.455 0.00 0.00 0.00 3.51
3103 3225 6.216801 TGCGAGTGTTTCCTTACATAGTAT 57.783 37.500 0.00 0.00 0.00 2.12
3107 3375 7.491696 GCGAGTGTTTCCTTACATAGTATTTCT 59.508 37.037 0.00 0.00 0.00 2.52
3253 3521 9.993454 TCAGATTATGGAATGATAACTCTTCTG 57.007 33.333 0.00 0.00 29.80 3.02
3329 3618 8.956533 TGCAGCTAATACTCATGTACAAAATA 57.043 30.769 0.00 0.00 0.00 1.40
3392 3681 5.406175 CCATTGCCACTTCAACAAACAATAG 59.594 40.000 0.00 0.00 0.00 1.73
3397 3686 6.072508 TGCCACTTCAACAAACAATAGATCTC 60.073 38.462 0.00 0.00 0.00 2.75
3398 3687 6.072508 GCCACTTCAACAAACAATAGATCTCA 60.073 38.462 0.00 0.00 0.00 3.27
3474 3764 3.402110 CTGGATACTTGCACTGTTGTGA 58.598 45.455 0.00 0.00 41.78 3.58
3475 3765 3.402110 TGGATACTTGCACTGTTGTGAG 58.598 45.455 0.00 0.00 41.78 3.51
3476 3766 3.181455 TGGATACTTGCACTGTTGTGAGT 60.181 43.478 0.00 0.00 41.78 3.41
3533 3823 2.028930 ACTCTGGGAAGATGTTCGTCAC 60.029 50.000 0.00 0.00 32.92 3.67
3566 3856 8.403236 GGGTAAATATTTCTTCATAAACAGCGT 58.597 33.333 3.39 0.00 0.00 5.07
3583 3873 2.236395 AGCGTTATAGTCTGGTGCCTTT 59.764 45.455 0.00 0.00 0.00 3.11
3586 3876 4.000988 CGTTATAGTCTGGTGCCTTTTGT 58.999 43.478 0.00 0.00 0.00 2.83
3590 3880 1.493022 AGTCTGGTGCCTTTTGTGGTA 59.507 47.619 0.00 0.00 0.00 3.25
3600 3890 8.037758 TGGTGCCTTTTGTGGTAATTATTATTG 58.962 33.333 0.00 0.00 0.00 1.90
3646 3936 5.356882 TTCTCTATTTGCTTGTTGGTTCG 57.643 39.130 0.00 0.00 0.00 3.95
3658 3948 1.798813 GTTGGTTCGGTCTACTTGCTG 59.201 52.381 0.00 0.00 0.00 4.41
3683 3974 3.196254 CCCCTGTTTGCATGCTTTTAGAT 59.804 43.478 20.33 0.00 0.00 1.98
3691 3982 9.518906 TGTTTGCATGCTTTTAGATAATATGTG 57.481 29.630 20.33 0.00 0.00 3.21
3692 3983 9.520204 GTTTGCATGCTTTTAGATAATATGTGT 57.480 29.630 20.33 0.00 0.00 3.72
3694 3985 9.518906 TTGCATGCTTTTAGATAATATGTGTTG 57.481 29.630 20.33 0.00 0.00 3.33
3695 3986 7.648908 TGCATGCTTTTAGATAATATGTGTTGC 59.351 33.333 20.33 0.00 0.00 4.17
3696 3987 7.864379 GCATGCTTTTAGATAATATGTGTTGCT 59.136 33.333 11.37 0.00 0.00 3.91
3707 3998 1.246649 TGTGTTGCTTGCAGGTATGG 58.753 50.000 0.00 0.00 0.00 2.74
3708 3999 1.247567 GTGTTGCTTGCAGGTATGGT 58.752 50.000 0.00 0.00 0.00 3.55
3716 4007 4.338964 TGCTTGCAGGTATGGTAAATGATG 59.661 41.667 0.00 0.00 0.00 3.07
3843 4137 3.766068 ATCCATCATGTCTGCAGTAGG 57.234 47.619 14.67 6.34 0.00 3.18
3850 4144 3.324846 TCATGTCTGCAGTAGGAGTTGTT 59.675 43.478 14.67 0.00 34.40 2.83
3885 4179 5.999600 TGAAATGCTCAGACTCTTTGATTGA 59.000 36.000 0.00 0.00 0.00 2.57
3887 4181 6.438259 AATGCTCAGACTCTTTGATTGATG 57.562 37.500 0.00 0.00 0.00 3.07
3889 4183 4.934001 TGCTCAGACTCTTTGATTGATGTC 59.066 41.667 0.00 0.00 0.00 3.06
3891 4185 5.642919 GCTCAGACTCTTTGATTGATGTCTT 59.357 40.000 0.00 0.00 33.21 3.01
3899 4200 8.043113 ACTCTTTGATTGATGTCTTATGCACTA 58.957 33.333 0.00 0.00 0.00 2.74
3901 4202 6.925610 TTGATTGATGTCTTATGCACTACC 57.074 37.500 0.00 0.00 0.00 3.18
3918 4219 6.774170 TGCACTACCGGTCTAATTTATCTCTA 59.226 38.462 12.40 0.00 0.00 2.43
3921 4222 8.074972 CACTACCGGTCTAATTTATCTCTACAC 58.925 40.741 12.40 0.00 0.00 2.90
3945 4254 4.470334 ACCTTGTGCACAAACTTTGATT 57.530 36.364 30.62 8.49 35.15 2.57
3949 4258 5.809562 CCTTGTGCACAAACTTTGATTGTTA 59.190 36.000 30.62 5.85 38.90 2.41
3980 4289 3.494045 TCTGTGACTTGCAGATCTACG 57.506 47.619 0.00 0.00 37.98 3.51
4031 4340 5.182950 AGAGCGATATTCTGTGAGTATCCTG 59.817 44.000 0.00 0.00 30.71 3.86
4038 4347 6.707440 ATTCTGTGAGTATCCTGACTACTG 57.293 41.667 0.00 0.00 29.67 2.74
4072 4381 3.479489 TCGTAAAGGGTTTTCACTTCCC 58.521 45.455 0.00 0.00 43.53 3.97
4112 4421 5.559148 ATCTCTTGAAGAAGTCAGGTGTT 57.441 39.130 0.00 0.00 37.61 3.32
4119 4428 3.567478 AGAAGTCAGGTGTTGCTCTTT 57.433 42.857 0.00 0.00 0.00 2.52
4161 4470 6.406961 CCACCAGTAACATAGAAGTAGCATCA 60.407 42.308 0.00 0.00 0.00 3.07
4176 4485 6.590068 AGTAGCATCACAGCTCATAGATTTT 58.410 36.000 0.00 0.00 45.26 1.82
4177 4486 7.730084 AGTAGCATCACAGCTCATAGATTTTA 58.270 34.615 0.00 0.00 45.26 1.52
4178 4487 8.373981 AGTAGCATCACAGCTCATAGATTTTAT 58.626 33.333 0.00 0.00 45.26 1.40
4203 4512 8.027440 TGATTTAATGTTAAAGCATGTTTGGC 57.973 30.769 11.00 0.00 42.15 4.52
4204 4513 6.459257 TTTAATGTTAAAGCATGTTTGGCG 57.541 33.333 0.00 0.00 36.08 5.69
4205 4514 1.777101 TGTTAAAGCATGTTTGGCGC 58.223 45.000 0.00 0.00 36.08 6.53
4206 4515 0.707822 GTTAAAGCATGTTTGGCGCG 59.292 50.000 0.00 0.00 36.08 6.86
4207 4516 0.312416 TTAAAGCATGTTTGGCGCGT 59.688 45.000 8.43 0.00 36.08 6.01
4212 4521 0.179176 GCATGTTTGGCGCGTTATCA 60.179 50.000 8.43 1.63 0.00 2.15
4249 4559 2.017752 GCATCAGGCGGCTTACTTC 58.982 57.895 9.66 0.00 0.00 3.01
4335 4645 3.073946 CCAAGGTCCTCTTCTTTTACCCA 59.926 47.826 0.00 0.00 32.41 4.51
4361 4674 5.597594 AGATTTTAGTAGTTACTCCCTCCGG 59.402 44.000 0.00 0.00 37.73 5.14
4362 4675 4.591321 TTTAGTAGTTACTCCCTCCGGA 57.409 45.455 2.93 2.93 37.73 5.14
4363 4676 4.591321 TTAGTAGTTACTCCCTCCGGAA 57.409 45.455 5.23 0.00 37.86 4.30
4364 4677 3.463048 AGTAGTTACTCCCTCCGGAAA 57.537 47.619 5.23 0.00 37.86 3.13
4365 4678 3.363627 AGTAGTTACTCCCTCCGGAAAG 58.636 50.000 5.23 6.10 37.86 2.62
4366 4679 2.617840 AGTTACTCCCTCCGGAAAGA 57.382 50.000 5.23 4.03 37.86 2.52
4372 4685 4.691326 ACTCCCTCCGGAAAGAAATATC 57.309 45.455 5.23 0.00 37.86 1.63
4377 4690 4.381411 CCTCCGGAAAGAAATATCAGACC 58.619 47.826 5.23 0.00 0.00 3.85
4378 4691 4.051922 CTCCGGAAAGAAATATCAGACCG 58.948 47.826 5.23 0.00 36.78 4.79
4382 4695 5.813672 CCGGAAAGAAATATCAGACCGTTTA 59.186 40.000 0.00 0.00 35.97 2.01
4384 4697 6.755141 CGGAAAGAAATATCAGACCGTTTAGA 59.245 38.462 0.00 0.00 34.39 2.10
4385 4698 7.438459 CGGAAAGAAATATCAGACCGTTTAGAT 59.562 37.037 0.00 0.00 34.39 1.98
4386 4699 8.766151 GGAAAGAAATATCAGACCGTTTAGATC 58.234 37.037 0.00 0.00 0.00 2.75
4387 4700 9.314321 GAAAGAAATATCAGACCGTTTAGATCA 57.686 33.333 0.00 0.00 0.00 2.92
4391 4704 9.182933 GAAATATCAGACCGTTTAGATCACTAC 57.817 37.037 0.00 0.00 0.00 2.73
4392 4705 8.466617 AATATCAGACCGTTTAGATCACTACT 57.533 34.615 0.00 0.00 0.00 2.57
4393 4706 5.562506 TCAGACCGTTTAGATCACTACTG 57.437 43.478 0.00 0.00 0.00 2.74
4394 4707 5.250982 TCAGACCGTTTAGATCACTACTGA 58.749 41.667 0.00 0.00 0.00 3.41
4548 4949 6.202188 ACATACAAATAACTAGCGGGATTTCG 59.798 38.462 0.00 0.00 0.00 3.46
4553 4954 0.529378 ACTAGCGGGATTTCGACGTT 59.471 50.000 0.00 0.00 0.00 3.99
4559 4960 2.923020 GCGGGATTTCGACGTTTAGTTA 59.077 45.455 0.00 0.00 0.00 2.24
4568 4969 8.761575 ATTTCGACGTTTAGTTATCTGGTAAA 57.238 30.769 0.00 0.00 0.00 2.01
4682 5088 2.407361 CAGTTGTAACGGTTCTAGTGCG 59.593 50.000 0.00 0.00 0.00 5.34
4724 5133 6.739112 TCGTCATAATATGGTCTCACAGAAG 58.261 40.000 0.00 0.00 0.00 2.85
4752 5161 2.119495 ACGGTGCATATCCTCCTCTTT 58.881 47.619 0.00 0.00 0.00 2.52
4753 5162 2.103263 ACGGTGCATATCCTCCTCTTTC 59.897 50.000 0.00 0.00 0.00 2.62
4754 5163 2.548920 CGGTGCATATCCTCCTCTTTCC 60.549 54.545 0.00 0.00 0.00 3.13
4766 5175 1.407025 CCTCTTTCCCCTCCGTTTAGC 60.407 57.143 0.00 0.00 0.00 3.09
4797 5208 2.879103 TGGGAGAAGTGGTTTCCATC 57.121 50.000 0.00 0.00 35.28 3.51
4808 5219 2.175499 TGGTTTCCATCTCCATCCATCC 59.825 50.000 0.00 0.00 0.00 3.51
4809 5220 2.175499 GGTTTCCATCTCCATCCATCCA 59.825 50.000 0.00 0.00 0.00 3.41
4812 5223 2.272698 TCCATCTCCATCCATCCATCC 58.727 52.381 0.00 0.00 0.00 3.51
4813 5224 1.990327 CCATCTCCATCCATCCATCCA 59.010 52.381 0.00 0.00 0.00 3.41
4815 5226 3.371702 CCATCTCCATCCATCCATCCATC 60.372 52.174 0.00 0.00 0.00 3.51
4816 5227 3.286871 TCTCCATCCATCCATCCATCT 57.713 47.619 0.00 0.00 0.00 2.90
4817 5228 3.179685 TCTCCATCCATCCATCCATCTC 58.820 50.000 0.00 0.00 0.00 2.75
4819 5230 1.990327 CCATCCATCCATCCATCTCCA 59.010 52.381 0.00 0.00 0.00 3.86
4820 5231 2.581246 CCATCCATCCATCCATCTCCAT 59.419 50.000 0.00 0.00 0.00 3.41
4822 5233 3.286871 TCCATCCATCCATCTCCATCT 57.713 47.619 0.00 0.00 0.00 2.90
4824 5235 4.969133 TCCATCCATCCATCTCCATCTAT 58.031 43.478 0.00 0.00 0.00 1.98
4826 5237 5.901853 TCCATCCATCCATCTCCATCTATAC 59.098 44.000 0.00 0.00 0.00 1.47
5142 5597 7.721842 TGATACCAGGTGAAACTGTGAAATTTA 59.278 33.333 0.76 0.00 36.75 1.40
5279 5736 8.822855 CACAGTTTTATGTTGACAAGTACTACA 58.177 33.333 0.00 0.00 0.00 2.74
5289 5746 7.119992 TGTTGACAAGTACTACAACAACAACAT 59.880 33.333 26.11 0.00 45.71 2.71
5292 5749 7.011828 ACAAGTACTACAACAACAACATCAC 57.988 36.000 0.00 0.00 0.00 3.06
5293 5750 6.821665 ACAAGTACTACAACAACAACATCACT 59.178 34.615 0.00 0.00 0.00 3.41
5295 5752 8.822855 CAAGTACTACAACAACAACATCACTAA 58.177 33.333 0.00 0.00 0.00 2.24
5296 5753 8.589335 AGTACTACAACAACAACATCACTAAG 57.411 34.615 0.00 0.00 0.00 2.18
5298 5755 7.478520 ACTACAACAACAACATCACTAAGAC 57.521 36.000 0.00 0.00 0.00 3.01
5299 5756 7.272978 ACTACAACAACAACATCACTAAGACT 58.727 34.615 0.00 0.00 0.00 3.24
5301 5758 7.715265 ACAACAACAACATCACTAAGACTAG 57.285 36.000 0.00 0.00 0.00 2.57
5302 5759 6.202954 ACAACAACAACATCACTAAGACTAGC 59.797 38.462 0.00 0.00 0.00 3.42
5303 5760 5.238583 ACAACAACATCACTAAGACTAGCC 58.761 41.667 0.00 0.00 0.00 3.93
5304 5761 5.221641 ACAACAACATCACTAAGACTAGCCA 60.222 40.000 0.00 0.00 0.00 4.75
5305 5762 5.683876 ACAACATCACTAAGACTAGCCAT 57.316 39.130 0.00 0.00 0.00 4.40
5306 5763 6.791867 ACAACATCACTAAGACTAGCCATA 57.208 37.500 0.00 0.00 0.00 2.74
5307 5764 7.182817 ACAACATCACTAAGACTAGCCATAA 57.817 36.000 0.00 0.00 0.00 1.90
5308 5765 7.796054 ACAACATCACTAAGACTAGCCATAAT 58.204 34.615 0.00 0.00 0.00 1.28
5309 5766 7.712639 ACAACATCACTAAGACTAGCCATAATG 59.287 37.037 0.00 0.00 0.00 1.90
5310 5767 6.763355 ACATCACTAAGACTAGCCATAATGG 58.237 40.000 0.00 0.00 41.55 3.16
5311 5768 5.808366 TCACTAAGACTAGCCATAATGGG 57.192 43.478 0.00 0.00 38.19 4.00
5312 5769 5.464069 TCACTAAGACTAGCCATAATGGGA 58.536 41.667 0.00 0.00 38.19 4.37
5313 5770 5.540337 TCACTAAGACTAGCCATAATGGGAG 59.460 44.000 0.00 0.00 38.19 4.30
5314 5771 5.305644 CACTAAGACTAGCCATAATGGGAGT 59.694 44.000 0.00 0.00 38.19 3.85
5315 5772 6.493802 CACTAAGACTAGCCATAATGGGAGTA 59.506 42.308 0.00 0.00 38.19 2.59
5316 5773 7.015292 CACTAAGACTAGCCATAATGGGAGTAA 59.985 40.741 0.00 0.00 38.19 2.24
5317 5774 5.810080 AGACTAGCCATAATGGGAGTAAC 57.190 43.478 0.00 0.00 38.19 2.50
5318 5775 5.468658 AGACTAGCCATAATGGGAGTAACT 58.531 41.667 0.00 0.00 38.19 2.24
5319 5776 5.905913 AGACTAGCCATAATGGGAGTAACTT 59.094 40.000 0.00 0.00 38.19 2.66
5320 5777 6.042208 AGACTAGCCATAATGGGAGTAACTTC 59.958 42.308 0.00 0.00 38.19 3.01
5321 5778 4.073293 AGCCATAATGGGAGTAACTTCG 57.927 45.455 0.00 0.00 38.19 3.79
5322 5779 3.139077 GCCATAATGGGAGTAACTTCGG 58.861 50.000 0.00 0.00 38.19 4.30
5323 5780 3.433173 GCCATAATGGGAGTAACTTCGGT 60.433 47.826 0.00 0.00 38.19 4.69
5324 5781 4.202284 GCCATAATGGGAGTAACTTCGGTA 60.202 45.833 0.00 0.00 38.19 4.02
5325 5782 5.539048 CCATAATGGGAGTAACTTCGGTAG 58.461 45.833 0.00 0.00 32.67 3.18
5326 5783 5.070047 CCATAATGGGAGTAACTTCGGTAGT 59.930 44.000 0.00 0.00 34.05 2.73
5327 5784 6.266103 CCATAATGGGAGTAACTTCGGTAGTA 59.734 42.308 0.00 0.00 32.28 1.82
5328 5785 7.201938 CCATAATGGGAGTAACTTCGGTAGTAA 60.202 40.741 0.00 0.00 32.28 2.24
5329 5786 6.803366 AATGGGAGTAACTTCGGTAGTAAT 57.197 37.500 0.00 0.00 35.54 1.89
5330 5787 7.902920 AATGGGAGTAACTTCGGTAGTAATA 57.097 36.000 0.00 0.00 35.54 0.98
5331 5788 8.488308 AATGGGAGTAACTTCGGTAGTAATAT 57.512 34.615 0.00 0.00 35.54 1.28
5332 5789 7.516198 TGGGAGTAACTTCGGTAGTAATATC 57.484 40.000 0.00 0.00 35.54 1.63
5333 5790 6.205464 TGGGAGTAACTTCGGTAGTAATATCG 59.795 42.308 0.00 0.00 35.54 2.92
5334 5791 6.428159 GGGAGTAACTTCGGTAGTAATATCGA 59.572 42.308 0.63 0.63 35.54 3.59
5335 5792 7.360776 GGGAGTAACTTCGGTAGTAATATCGAG 60.361 44.444 5.64 3.70 35.54 4.04
5336 5793 7.172361 GGAGTAACTTCGGTAGTAATATCGAGT 59.828 40.741 5.64 4.28 35.54 4.18
5337 5794 8.082334 AGTAACTTCGGTAGTAATATCGAGTC 57.918 38.462 5.64 0.00 35.54 3.36
5338 5795 5.938438 ACTTCGGTAGTAATATCGAGTCC 57.062 43.478 5.64 0.00 34.56 3.85
5339 5796 5.371526 ACTTCGGTAGTAATATCGAGTCCA 58.628 41.667 5.64 0.00 34.56 4.02
5340 5797 5.824624 ACTTCGGTAGTAATATCGAGTCCAA 59.175 40.000 5.64 0.00 34.56 3.53
5341 5798 5.679734 TCGGTAGTAATATCGAGTCCAAC 57.320 43.478 0.63 0.00 0.00 3.77
5342 5799 5.371526 TCGGTAGTAATATCGAGTCCAACT 58.628 41.667 0.63 0.00 0.00 3.16
5343 5800 5.468072 TCGGTAGTAATATCGAGTCCAACTC 59.532 44.000 0.63 0.00 41.71 3.01
5344 5801 5.237996 CGGTAGTAATATCGAGTCCAACTCA 59.762 44.000 0.00 0.00 45.30 3.41
5345 5802 6.566187 CGGTAGTAATATCGAGTCCAACTCAG 60.566 46.154 0.00 1.37 45.30 3.35
5346 5803 6.485984 GGTAGTAATATCGAGTCCAACTCAGA 59.514 42.308 7.78 6.13 45.30 3.27
5347 5804 7.013083 GGTAGTAATATCGAGTCCAACTCAGAA 59.987 40.741 7.78 0.00 45.30 3.02
5348 5805 7.406031 AGTAATATCGAGTCCAACTCAGAAA 57.594 36.000 7.78 0.00 45.30 2.52
5349 5806 7.837863 AGTAATATCGAGTCCAACTCAGAAAA 58.162 34.615 7.78 0.98 45.30 2.29
5350 5807 8.478877 AGTAATATCGAGTCCAACTCAGAAAAT 58.521 33.333 7.78 2.78 45.30 1.82
5351 5808 9.099454 GTAATATCGAGTCCAACTCAGAAAATT 57.901 33.333 7.78 10.58 45.30 1.82
5352 5809 8.567285 AATATCGAGTCCAACTCAGAAAATTT 57.433 30.769 7.78 0.00 45.30 1.82
5353 5810 5.673337 TCGAGTCCAACTCAGAAAATTTG 57.327 39.130 7.78 0.00 45.30 2.32
5354 5811 4.024048 TCGAGTCCAACTCAGAAAATTTGC 60.024 41.667 7.78 0.00 45.30 3.68
5355 5812 4.023707 CGAGTCCAACTCAGAAAATTTGCT 60.024 41.667 7.78 0.00 45.30 3.91
5356 5813 5.506317 CGAGTCCAACTCAGAAAATTTGCTT 60.506 40.000 0.00 0.00 45.30 3.91
5357 5814 6.293407 CGAGTCCAACTCAGAAAATTTGCTTA 60.293 38.462 0.00 0.00 45.30 3.09
5358 5815 7.530426 AGTCCAACTCAGAAAATTTGCTTAT 57.470 32.000 0.00 0.00 0.00 1.73
5359 5816 7.373493 AGTCCAACTCAGAAAATTTGCTTATG 58.627 34.615 0.00 0.00 0.00 1.90
5360 5817 7.014615 AGTCCAACTCAGAAAATTTGCTTATGT 59.985 33.333 0.00 0.00 0.00 2.29
5361 5818 7.115378 GTCCAACTCAGAAAATTTGCTTATGTG 59.885 37.037 0.00 0.00 0.00 3.21
5362 5819 6.366877 CCAACTCAGAAAATTTGCTTATGTGG 59.633 38.462 0.00 0.00 0.00 4.17
5363 5820 5.473039 ACTCAGAAAATTTGCTTATGTGGC 58.527 37.500 0.00 0.00 0.00 5.01
5364 5821 5.010922 ACTCAGAAAATTTGCTTATGTGGCA 59.989 36.000 0.00 0.00 37.97 4.92
5365 5822 5.851720 TCAGAAAATTTGCTTATGTGGCAA 58.148 33.333 0.00 0.00 46.12 4.52
5366 5823 6.465948 TCAGAAAATTTGCTTATGTGGCAAT 58.534 32.000 0.00 0.00 46.81 3.56
5367 5824 6.369340 TCAGAAAATTTGCTTATGTGGCAATG 59.631 34.615 0.00 0.00 46.81 2.82
5368 5825 6.369340 CAGAAAATTTGCTTATGTGGCAATGA 59.631 34.615 0.00 0.00 46.81 2.57
5369 5826 6.592607 AGAAAATTTGCTTATGTGGCAATGAG 59.407 34.615 0.00 0.00 46.81 2.90
5370 5827 5.410355 AATTTGCTTATGTGGCAATGAGT 57.590 34.783 2.01 0.00 46.81 3.41
5371 5828 4.870123 TTTGCTTATGTGGCAATGAGTT 57.130 36.364 2.01 0.00 46.81 3.01
5372 5829 5.973899 TTTGCTTATGTGGCAATGAGTTA 57.026 34.783 2.01 0.00 46.81 2.24
5373 5830 5.973899 TTGCTTATGTGGCAATGAGTTAA 57.026 34.783 0.00 0.00 43.50 2.01
5374 5831 6.528537 TTGCTTATGTGGCAATGAGTTAAT 57.471 33.333 0.00 0.00 43.50 1.40
5375 5832 7.637631 TTGCTTATGTGGCAATGAGTTAATA 57.362 32.000 0.00 0.00 43.50 0.98
5376 5833 7.637631 TGCTTATGTGGCAATGAGTTAATAA 57.362 32.000 0.00 0.00 36.71 1.40
5377 5834 7.706159 TGCTTATGTGGCAATGAGTTAATAAG 58.294 34.615 0.00 0.00 36.71 1.73
5378 5835 7.141363 GCTTATGTGGCAATGAGTTAATAAGG 58.859 38.462 0.00 0.00 30.56 2.69
5379 5836 7.013274 GCTTATGTGGCAATGAGTTAATAAGGA 59.987 37.037 0.00 0.00 30.56 3.36
5380 5837 6.949352 ATGTGGCAATGAGTTAATAAGGAG 57.051 37.500 0.00 0.00 0.00 3.69
5381 5838 6.061022 TGTGGCAATGAGTTAATAAGGAGA 57.939 37.500 0.00 0.00 0.00 3.71
5382 5839 6.115446 TGTGGCAATGAGTTAATAAGGAGAG 58.885 40.000 0.00 0.00 0.00 3.20
5383 5840 6.070251 TGTGGCAATGAGTTAATAAGGAGAGA 60.070 38.462 0.00 0.00 0.00 3.10
5384 5841 6.995091 GTGGCAATGAGTTAATAAGGAGAGAT 59.005 38.462 0.00 0.00 0.00 2.75
5385 5842 6.994496 TGGCAATGAGTTAATAAGGAGAGATG 59.006 38.462 0.00 0.00 0.00 2.90
5386 5843 6.995091 GGCAATGAGTTAATAAGGAGAGATGT 59.005 38.462 0.00 0.00 0.00 3.06
5387 5844 8.150945 GGCAATGAGTTAATAAGGAGAGATGTA 58.849 37.037 0.00 0.00 0.00 2.29
5388 5845 9.202273 GCAATGAGTTAATAAGGAGAGATGTAG 57.798 37.037 0.00 0.00 0.00 2.74
5403 5860 8.992073 GGAGAGATGTAGTACTAGTAACTTAGC 58.008 40.741 3.61 0.00 0.00 3.09
5404 5861 9.768662 GAGAGATGTAGTACTAGTAACTTAGCT 57.231 37.037 3.61 0.33 0.00 3.32
5421 5878 8.983307 AACTTAGCTAGTTACTGTAACATCAC 57.017 34.615 27.12 15.70 45.22 3.06
5422 5879 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
5423 5880 8.750298 ACTTAGCTAGTTACTGTAACATCACAT 58.250 33.333 27.12 11.85 41.07 3.21
5424 5881 8.926715 TTAGCTAGTTACTGTAACATCACATG 57.073 34.615 27.12 12.57 41.07 3.21
5426 5883 7.036220 AGCTAGTTACTGTAACATCACATGTC 58.964 38.462 27.12 9.51 44.07 3.06
5427 5884 6.255887 GCTAGTTACTGTAACATCACATGTCC 59.744 42.308 27.12 1.73 44.07 4.02
5428 5885 5.488341 AGTTACTGTAACATCACATGTCCC 58.512 41.667 27.12 1.55 44.07 4.46
5429 5886 5.012664 AGTTACTGTAACATCACATGTCCCA 59.987 40.000 27.12 0.00 44.07 4.37
5430 5887 4.365514 ACTGTAACATCACATGTCCCAA 57.634 40.909 0.00 0.00 44.07 4.12
5431 5888 4.922206 ACTGTAACATCACATGTCCCAAT 58.078 39.130 0.00 0.00 44.07 3.16
5432 5889 4.701651 ACTGTAACATCACATGTCCCAATG 59.298 41.667 0.00 0.45 44.07 2.82
5433 5890 3.443329 TGTAACATCACATGTCCCAATGC 59.557 43.478 0.00 0.00 44.07 3.56
5434 5891 2.219080 ACATCACATGTCCCAATGCA 57.781 45.000 0.00 0.00 39.92 3.96
5435 5892 2.527497 ACATCACATGTCCCAATGCAA 58.473 42.857 0.00 0.00 39.92 4.08
5436 5893 3.101437 ACATCACATGTCCCAATGCAAT 58.899 40.909 0.00 0.00 39.92 3.56
5437 5894 4.279982 ACATCACATGTCCCAATGCAATA 58.720 39.130 0.00 0.00 39.92 1.90
5438 5895 4.897076 ACATCACATGTCCCAATGCAATAT 59.103 37.500 0.00 0.00 39.92 1.28
5439 5896 4.922471 TCACATGTCCCAATGCAATATG 57.078 40.909 0.00 0.00 0.00 1.78
5440 5897 4.534797 TCACATGTCCCAATGCAATATGA 58.465 39.130 0.00 0.00 0.00 2.15
5441 5898 4.581409 TCACATGTCCCAATGCAATATGAG 59.419 41.667 0.00 0.00 0.00 2.90
5442 5899 4.340097 CACATGTCCCAATGCAATATGAGT 59.660 41.667 0.00 0.00 0.00 3.41
5443 5900 4.581824 ACATGTCCCAATGCAATATGAGTC 59.418 41.667 0.00 0.00 0.00 3.36
5444 5901 4.508551 TGTCCCAATGCAATATGAGTCT 57.491 40.909 0.00 0.00 0.00 3.24
5445 5902 5.628797 TGTCCCAATGCAATATGAGTCTA 57.371 39.130 0.00 0.00 0.00 2.59
5446 5903 6.191657 TGTCCCAATGCAATATGAGTCTAT 57.808 37.500 0.00 0.00 0.00 1.98
5447 5904 7.315066 TGTCCCAATGCAATATGAGTCTATA 57.685 36.000 0.00 0.00 0.00 1.31
5448 5905 7.744733 TGTCCCAATGCAATATGAGTCTATAA 58.255 34.615 0.00 0.00 0.00 0.98
5449 5906 7.661437 TGTCCCAATGCAATATGAGTCTATAAC 59.339 37.037 0.00 0.00 0.00 1.89
5450 5907 7.119846 GTCCCAATGCAATATGAGTCTATAACC 59.880 40.741 0.00 0.00 0.00 2.85
5451 5908 7.017551 TCCCAATGCAATATGAGTCTATAACCT 59.982 37.037 0.00 0.00 0.00 3.50
5452 5909 8.321353 CCCAATGCAATATGAGTCTATAACCTA 58.679 37.037 0.00 0.00 0.00 3.08
5453 5910 9.725019 CCAATGCAATATGAGTCTATAACCTAA 57.275 33.333 0.00 0.00 0.00 2.69
5471 5928 9.754382 ATAACCTAATAAATGAAGCTTTGCATG 57.246 29.630 0.00 0.00 0.00 4.06
5472 5929 7.174107 ACCTAATAAATGAAGCTTTGCATGT 57.826 32.000 0.00 0.00 0.00 3.21
5473 5930 7.614494 ACCTAATAAATGAAGCTTTGCATGTT 58.386 30.769 0.00 1.51 0.00 2.71
5474 5931 8.748412 ACCTAATAAATGAAGCTTTGCATGTTA 58.252 29.630 0.00 3.50 0.00 2.41
5475 5932 9.023967 CCTAATAAATGAAGCTTTGCATGTTAC 57.976 33.333 0.00 0.00 0.00 2.50
5476 5933 7.832503 AATAAATGAAGCTTTGCATGTTACC 57.167 32.000 0.00 0.00 0.00 2.85
5477 5934 4.870123 AATGAAGCTTTGCATGTTACCA 57.130 36.364 0.00 0.00 0.00 3.25
5478 5935 3.641437 TGAAGCTTTGCATGTTACCAC 57.359 42.857 0.00 0.00 0.00 4.16
5479 5936 2.954989 TGAAGCTTTGCATGTTACCACA 59.045 40.909 0.00 0.00 37.31 4.17
5480 5937 3.243367 TGAAGCTTTGCATGTTACCACAC 60.243 43.478 0.00 0.00 35.03 3.82
5481 5938 2.586425 AGCTTTGCATGTTACCACACT 58.414 42.857 0.00 0.00 35.03 3.55
5482 5939 2.958355 AGCTTTGCATGTTACCACACTT 59.042 40.909 0.00 0.00 35.03 3.16
5483 5940 4.141287 AGCTTTGCATGTTACCACACTTA 58.859 39.130 0.00 0.00 35.03 2.24
5484 5941 4.766891 AGCTTTGCATGTTACCACACTTAT 59.233 37.500 0.00 0.00 35.03 1.73
5485 5942 5.943416 AGCTTTGCATGTTACCACACTTATA 59.057 36.000 0.00 0.00 35.03 0.98
5486 5943 6.603201 AGCTTTGCATGTTACCACACTTATAT 59.397 34.615 0.00 0.00 35.03 0.86
5487 5944 7.122650 AGCTTTGCATGTTACCACACTTATATT 59.877 33.333 0.00 0.00 35.03 1.28
5488 5945 8.402472 GCTTTGCATGTTACCACACTTATATTA 58.598 33.333 0.00 0.00 35.03 0.98
5489 5946 9.716507 CTTTGCATGTTACCACACTTATATTAC 57.283 33.333 0.00 0.00 35.03 1.89
5490 5947 9.456147 TTTGCATGTTACCACACTTATATTACT 57.544 29.630 0.00 0.00 35.03 2.24
5492 5949 9.537192 TGCATGTTACCACACTTATATTACTAC 57.463 33.333 0.00 0.00 35.03 2.73
5493 5950 8.985805 GCATGTTACCACACTTATATTACTACC 58.014 37.037 0.00 0.00 35.03 3.18
5494 5951 9.485206 CATGTTACCACACTTATATTACTACCC 57.515 37.037 0.00 0.00 35.03 3.69
5495 5952 8.606754 TGTTACCACACTTATATTACTACCCA 57.393 34.615 0.00 0.00 0.00 4.51
5496 5953 8.477256 TGTTACCACACTTATATTACTACCCAC 58.523 37.037 0.00 0.00 0.00 4.61
5497 5954 8.699130 GTTACCACACTTATATTACTACCCACT 58.301 37.037 0.00 0.00 0.00 4.00
5498 5955 9.934784 TTACCACACTTATATTACTACCCACTA 57.065 33.333 0.00 0.00 0.00 2.74
5500 5957 9.443365 ACCACACTTATATTACTACCCACTATT 57.557 33.333 0.00 0.00 0.00 1.73
5501 5958 9.706691 CCACACTTATATTACTACCCACTATTG 57.293 37.037 0.00 0.00 0.00 1.90
5512 5969 9.925545 TTACTACCCACTATTGAGATAGTAACA 57.074 33.333 0.00 0.00 45.17 2.41
5517 5974 9.080097 ACCCACTATTGAGATAGTAACATAGTC 57.920 37.037 0.00 0.00 45.17 2.59
5518 5975 9.303116 CCCACTATTGAGATAGTAACATAGTCT 57.697 37.037 0.00 0.00 45.17 3.24
5532 5989 9.517868 AGTAACATAGTCTAGGGATATGTGTAC 57.482 37.037 12.94 14.53 39.46 2.90
5533 5990 7.450124 AACATAGTCTAGGGATATGTGTACG 57.550 40.000 12.94 0.00 39.46 3.67
5534 5991 6.540995 ACATAGTCTAGGGATATGTGTACGT 58.459 40.000 11.97 0.00 38.40 3.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
320 324 7.511959 TGTAATAACAATGTTGCAGTGGTAA 57.488 32.000 9.15 0.00 35.32 2.85
323 327 9.585099 AATTATGTAATAACAATGTTGCAGTGG 57.415 29.630 9.15 0.00 42.43 4.00
372 376 3.441572 GCTAACCACTCGGACTACTTACA 59.558 47.826 0.00 0.00 35.59 2.41
924 969 6.549736 TCGGTCAGTCTAATCTTTATGGATGA 59.450 38.462 0.00 0.00 0.00 2.92
938 983 3.951663 TGTCTGAATCTCGGTCAGTCTA 58.048 45.455 1.67 0.00 42.63 2.59
1112 1157 4.336581 CGTGACGCTTCTTGGTGA 57.663 55.556 0.00 0.00 0.00 4.02
1223 1269 0.667487 TTCTTGCTCTCGGCGAACAG 60.667 55.000 12.13 11.11 45.43 3.16
1444 1494 7.607991 AGTTTCCCATCTCAGTAAACAATACTG 59.392 37.037 8.89 8.89 44.56 2.74
1468 1518 3.498774 ATGTTGCTCCAAGAGAACAGT 57.501 42.857 12.08 0.00 35.24 3.55
1475 1525 4.518970 GTCCTAAACAATGTTGCTCCAAGA 59.481 41.667 0.00 0.00 0.00 3.02
1479 1529 4.278419 ACAAGTCCTAAACAATGTTGCTCC 59.722 41.667 0.00 0.00 29.00 4.70
1495 1545 7.254852 TGTTCAGTTTTAAATGTCACAAGTCC 58.745 34.615 0.00 0.00 0.00 3.85
1546 1596 7.412137 TCATGTGAATATTCTATTGTCTGCG 57.588 36.000 16.24 0.00 0.00 5.18
1587 1637 7.718525 ACAAATACTTCTAGGCTTCTAGCTAC 58.281 38.462 0.00 0.00 41.99 3.58
1719 1769 9.421806 GATGTGAGAAACTGAGGATAATATCAG 57.578 37.037 2.41 0.81 46.76 2.90
1737 1787 4.651045 TGCTTCAAGCTATAGGATGTGAGA 59.349 41.667 11.57 0.00 42.97 3.27
1823 1873 8.805175 TCAATATCACAAAATTCACAATCAGGT 58.195 29.630 0.00 0.00 0.00 4.00
1894 1944 4.377839 AGGATCATTCGGCATATCTACG 57.622 45.455 0.00 0.00 0.00 3.51
2006 2056 4.998051 ACCCAAATAACAGGACTGATGTT 58.002 39.130 6.29 0.00 43.15 2.71
2013 2063 4.019231 AGGAGAAGACCCAAATAACAGGAC 60.019 45.833 0.00 0.00 0.00 3.85
2016 2066 6.901081 AAAAGGAGAAGACCCAAATAACAG 57.099 37.500 0.00 0.00 0.00 3.16
2026 2076 2.863809 TGGCAGAAAAAGGAGAAGACC 58.136 47.619 0.00 0.00 0.00 3.85
2041 2091 2.156917 TGTTGAGAAGAAGCATGGCAG 58.843 47.619 0.00 0.00 0.00 4.85
2046 2096 6.263842 TCATTTTGTCTGTTGAGAAGAAGCAT 59.736 34.615 0.00 0.00 0.00 3.79
2083 2133 6.469275 GGAAATCGCTCTGCAGTTAAATTAAC 59.531 38.462 14.67 7.75 38.94 2.01
2164 2214 3.339141 ACACACATACACACACACACAA 58.661 40.909 0.00 0.00 0.00 3.33
2165 2215 2.933260 GACACACATACACACACACACA 59.067 45.455 0.00 0.00 0.00 3.72
2166 2216 3.194861 AGACACACATACACACACACAC 58.805 45.455 0.00 0.00 0.00 3.82
2167 2217 3.118956 TGAGACACACATACACACACACA 60.119 43.478 0.00 0.00 0.00 3.72
2168 2218 3.453424 TGAGACACACATACACACACAC 58.547 45.455 0.00 0.00 0.00 3.82
2169 2219 3.716601 CTGAGACACACATACACACACA 58.283 45.455 0.00 0.00 0.00 3.72
2170 2220 2.476619 GCTGAGACACACATACACACAC 59.523 50.000 0.00 0.00 0.00 3.82
2171 2221 2.102252 TGCTGAGACACACATACACACA 59.898 45.455 0.00 0.00 0.00 3.72
2178 2228 5.518848 TTTCATTTTGCTGAGACACACAT 57.481 34.783 0.00 0.00 0.00 3.21
2223 2273 7.927092 TGCAACAATTGAAATCTGAAGAAATGA 59.073 29.630 13.59 0.00 0.00 2.57
2240 2290 8.449251 AAAAGGAACATACAAATGCAACAATT 57.551 26.923 0.00 0.00 36.50 2.32
2242 2292 9.553064 AATAAAAGGAACATACAAATGCAACAA 57.447 25.926 0.00 0.00 36.50 2.83
2308 2365 2.987547 CAGCAGCCCTGGTTGGTG 60.988 66.667 16.04 16.04 45.14 4.17
2424 2481 2.640332 TGTGACCTGGGTAGTGCAATAA 59.360 45.455 0.00 0.00 0.00 1.40
2462 2519 7.605691 AGAACTTCTGATTCTTTCGAATGACAT 59.394 33.333 12.85 9.85 39.89 3.06
2504 2561 1.210478 GCCAAGATCTAGCCTTCCACA 59.790 52.381 0.00 0.00 0.00 4.17
2510 2567 2.173126 AGACAGCCAAGATCTAGCCT 57.827 50.000 12.76 2.56 0.00 4.58
2511 2568 2.433970 AGAAGACAGCCAAGATCTAGCC 59.566 50.000 12.76 0.53 0.00 3.93
2513 2570 5.580297 GTGAAAGAAGACAGCCAAGATCTAG 59.420 44.000 0.00 0.00 0.00 2.43
2524 2639 4.626042 AGCTAGTGTGTGAAAGAAGACAG 58.374 43.478 0.00 0.00 0.00 3.51
2527 2642 6.406692 ACTAAGCTAGTGTGTGAAAGAAGA 57.593 37.500 0.00 0.00 37.69 2.87
2549 2664 1.506262 CATGGCAAAGCACGGGTAC 59.494 57.895 0.00 0.00 0.00 3.34
2552 2667 2.008268 GATCCATGGCAAAGCACGGG 62.008 60.000 6.96 0.00 0.00 5.28
2554 2669 0.527113 TTGATCCATGGCAAAGCACG 59.473 50.000 6.96 0.00 0.00 5.34
2575 2690 4.330894 CAGCATATGTTCGAACAGTGTGAT 59.669 41.667 32.19 24.86 43.04 3.06
2579 2694 5.475273 AATCAGCATATGTTCGAACAGTG 57.525 39.130 32.19 30.04 43.04 3.66
2587 2702 6.965500 GTGCATAGCATAATCAGCATATGTTC 59.035 38.462 4.29 0.00 41.91 3.18
2594 2709 3.181452 TGGAGTGCATAGCATAATCAGCA 60.181 43.478 0.00 0.00 41.91 4.41
2616 2731 1.672356 GTGACTGAAGGCACGGCAT 60.672 57.895 0.00 0.00 0.00 4.40
2621 2736 3.929610 GAGAATGTAGTGACTGAAGGCAC 59.070 47.826 8.32 8.32 35.30 5.01
2622 2737 3.367395 CGAGAATGTAGTGACTGAAGGCA 60.367 47.826 0.00 0.00 0.00 4.75
2649 2764 1.070914 TGTGGCGTGGACAATTGACTA 59.929 47.619 13.59 0.18 0.00 2.59
2663 2778 1.524621 GAGGGATGTGGATGTGGCG 60.525 63.158 0.00 0.00 0.00 5.69
2748 2866 4.301072 AGGACATAGCTAAGGTTGCAAA 57.699 40.909 0.00 0.00 0.00 3.68
2781 2900 6.183360 GCTTTAAGCAGCATAATGTACAGGAA 60.183 38.462 12.54 0.00 41.89 3.36
2855 2974 5.799827 TTTTGGGGGTATGTTTTCTTCAG 57.200 39.130 0.00 0.00 0.00 3.02
2886 3005 0.598065 AGGTGATCGCTTTTTGGTGC 59.402 50.000 6.18 0.00 0.00 5.01
2888 3007 3.134574 TGTAGGTGATCGCTTTTTGGT 57.865 42.857 6.18 0.00 0.00 3.67
2891 3010 5.335661 GGTCAATTGTAGGTGATCGCTTTTT 60.336 40.000 6.18 0.00 0.00 1.94
2907 3026 6.368516 AGAAAACTTGTGTTGTTGGTCAATTG 59.631 34.615 0.00 0.00 38.38 2.32
2909 3028 6.036577 AGAAAACTTGTGTTGTTGGTCAAT 57.963 33.333 0.00 0.00 38.38 2.57
2929 3048 0.324943 GAACTGCTGCCCCTGTAGAA 59.675 55.000 0.00 0.00 0.00 2.10
2936 3055 1.809567 CTTGTTGGAACTGCTGCCCC 61.810 60.000 0.00 0.00 0.00 5.80
2957 3076 1.174712 AAATCTTGCAGCGCCACAGT 61.175 50.000 2.29 0.00 0.00 3.55
2959 3078 0.804364 CTAAATCTTGCAGCGCCACA 59.196 50.000 2.29 0.00 0.00 4.17
2986 3105 4.082026 CCTAGCCAGGGTTCAAAATTCAAG 60.082 45.833 0.00 0.00 38.41 3.02
3002 3122 1.146041 CGCTACAATGCCCTAGCCA 59.854 57.895 0.00 0.00 38.69 4.75
3037 3159 7.074653 TCACCTACAGTAAACTTGGAATTCT 57.925 36.000 5.23 0.00 0.00 2.40
3067 3189 3.525537 ACACTCGCATTATCAGACTTGG 58.474 45.455 0.00 0.00 0.00 3.61
3070 3192 4.081420 AGGAAACACTCGCATTATCAGACT 60.081 41.667 0.00 0.00 0.00 3.24
3079 3201 5.086104 ACTATGTAAGGAAACACTCGCAT 57.914 39.130 0.00 0.00 30.75 4.73
3080 3202 4.530710 ACTATGTAAGGAAACACTCGCA 57.469 40.909 0.00 0.00 30.75 5.10
3081 3203 7.491696 AGAAATACTATGTAAGGAAACACTCGC 59.508 37.037 0.00 0.00 30.75 5.03
3082 3204 8.928270 AGAAATACTATGTAAGGAAACACTCG 57.072 34.615 0.00 0.00 30.75 4.18
3174 3442 7.297936 TCAGACTCATTTACTTCACCTACAA 57.702 36.000 0.00 0.00 0.00 2.41
3190 3458 7.229306 GCACCATAATTTCCATTATCAGACTCA 59.771 37.037 0.00 0.00 33.88 3.41
3253 3521 0.393537 CAGGAGTCCCATCTGTTGCC 60.394 60.000 5.25 0.00 33.88 4.52
3293 3581 6.147864 AGTATTAGCTGCAGAAGAGAGAAG 57.852 41.667 20.43 0.00 0.00 2.85
3295 3583 5.196695 TGAGTATTAGCTGCAGAAGAGAGA 58.803 41.667 20.43 0.00 0.00 3.10
3296 3584 5.512753 TGAGTATTAGCTGCAGAAGAGAG 57.487 43.478 20.43 0.00 0.00 3.20
3340 3629 1.351076 CCCCCTGCTCAACCAATTTT 58.649 50.000 0.00 0.00 0.00 1.82
3341 3630 1.194121 GCCCCCTGCTCAACCAATTT 61.194 55.000 0.00 0.00 36.87 1.82
3342 3631 1.610379 GCCCCCTGCTCAACCAATT 60.610 57.895 0.00 0.00 36.87 2.32
3343 3632 2.037847 GCCCCCTGCTCAACCAAT 59.962 61.111 0.00 0.00 36.87 3.16
3366 3655 1.047002 TTGTTGAAGTGGCAATGGGG 58.953 50.000 0.00 0.00 0.00 4.96
3367 3656 2.158986 TGTTTGTTGAAGTGGCAATGGG 60.159 45.455 0.00 0.00 0.00 4.00
3368 3657 3.176552 TGTTTGTTGAAGTGGCAATGG 57.823 42.857 0.00 0.00 0.00 3.16
3369 3658 6.215121 TCTATTGTTTGTTGAAGTGGCAATG 58.785 36.000 0.00 0.00 0.00 2.82
3370 3659 6.403866 TCTATTGTTTGTTGAAGTGGCAAT 57.596 33.333 0.00 0.00 0.00 3.56
3509 3799 2.632996 ACGAACATCTTCCCAGAGTTGA 59.367 45.455 0.00 0.00 30.36 3.18
3512 3802 2.028930 GTGACGAACATCTTCCCAGAGT 60.029 50.000 0.00 0.00 30.36 3.24
3563 3853 2.311124 AAGGCACCAGACTATAACGC 57.689 50.000 0.00 0.00 27.97 4.84
3564 3854 4.000988 ACAAAAGGCACCAGACTATAACG 58.999 43.478 0.00 0.00 27.97 3.18
3566 3856 4.202524 ACCACAAAAGGCACCAGACTATAA 60.203 41.667 0.00 0.00 27.97 0.98
3570 3860 0.258774 ACCACAAAAGGCACCAGACT 59.741 50.000 0.00 0.00 30.77 3.24
3616 3906 7.699812 CCAACAAGCAAATAGAGAATTAGAAGC 59.300 37.037 0.00 0.00 0.00 3.86
3623 3913 5.106157 CCGAACCAACAAGCAAATAGAGAAT 60.106 40.000 0.00 0.00 0.00 2.40
3646 3936 0.984995 AGGGGTTCAGCAAGTAGACC 59.015 55.000 0.00 0.00 0.00 3.85
3658 3948 0.681175 AAGCATGCAAACAGGGGTTC 59.319 50.000 21.98 0.00 35.82 3.62
3683 3974 5.299028 CCATACCTGCAAGCAACACATATTA 59.701 40.000 0.00 0.00 0.00 0.98
3691 3982 4.157656 TCATTTACCATACCTGCAAGCAAC 59.842 41.667 0.00 0.00 0.00 4.17
3692 3983 4.339748 TCATTTACCATACCTGCAAGCAA 58.660 39.130 0.00 0.00 0.00 3.91
3693 3984 3.961849 TCATTTACCATACCTGCAAGCA 58.038 40.909 0.00 0.00 0.00 3.91
3694 3985 4.794003 GCATCATTTACCATACCTGCAAGC 60.794 45.833 0.00 0.00 0.00 4.01
3695 3986 4.581824 AGCATCATTTACCATACCTGCAAG 59.418 41.667 0.00 0.00 0.00 4.01
3696 3987 4.535781 AGCATCATTTACCATACCTGCAA 58.464 39.130 0.00 0.00 0.00 4.08
3707 3998 9.624697 TTCACAAGATTTGTTAGCATCATTTAC 57.375 29.630 0.00 0.00 43.23 2.01
3708 3999 9.624697 GTTCACAAGATTTGTTAGCATCATTTA 57.375 29.630 0.00 0.00 43.23 1.40
3716 4007 7.041372 TCCTACAAGTTCACAAGATTTGTTAGC 60.041 37.037 0.00 0.00 43.23 3.09
3803 4094 5.105797 TGGATTCCACACATGTTAAAGATGC 60.106 40.000 0.00 0.00 0.00 3.91
3807 4098 6.513806 TGATGGATTCCACACATGTTAAAG 57.486 37.500 7.76 0.00 35.80 1.85
3843 4137 3.753294 TCAGAAGGTCTGGAACAACTC 57.247 47.619 5.46 0.00 44.39 3.01
3850 4144 2.639347 TGAGCATTTCAGAAGGTCTGGA 59.361 45.455 5.46 0.00 44.39 3.86
3874 4168 7.317842 AGTGCATAAGACATCAATCAAAGAG 57.682 36.000 0.00 0.00 0.00 2.85
3875 4169 7.280876 GGTAGTGCATAAGACATCAATCAAAGA 59.719 37.037 0.00 0.00 0.00 2.52
3876 4170 7.412853 GGTAGTGCATAAGACATCAATCAAAG 58.587 38.462 0.00 0.00 0.00 2.77
3879 4173 5.049828 CGGTAGTGCATAAGACATCAATCA 58.950 41.667 0.00 0.00 0.00 2.57
3880 4174 4.449068 CCGGTAGTGCATAAGACATCAATC 59.551 45.833 0.00 0.00 0.00 2.67
3881 4175 4.141711 ACCGGTAGTGCATAAGACATCAAT 60.142 41.667 4.49 0.00 0.00 2.57
3885 4179 3.031736 AGACCGGTAGTGCATAAGACAT 58.968 45.455 7.34 0.00 0.00 3.06
3887 4181 4.644103 TTAGACCGGTAGTGCATAAGAC 57.356 45.455 7.34 0.00 0.00 3.01
3889 4183 8.088981 AGATAAATTAGACCGGTAGTGCATAAG 58.911 37.037 7.34 0.00 0.00 1.73
3891 4185 7.450634 AGAGATAAATTAGACCGGTAGTGCATA 59.549 37.037 7.34 0.00 0.00 3.14
3899 4200 7.414222 TTGTGTAGAGATAAATTAGACCGGT 57.586 36.000 6.92 6.92 0.00 5.28
3901 4202 7.980099 AGGTTTGTGTAGAGATAAATTAGACCG 59.020 37.037 0.00 0.00 0.00 4.79
3921 4222 3.993081 TCAAAGTTTGTGCACAAGGTTTG 59.007 39.130 35.33 35.33 39.34 2.93
3932 4233 7.467557 AAGTGCATAACAATCAAAGTTTGTG 57.532 32.000 15.08 9.68 37.38 3.33
3965 4274 2.881074 TGAAGCGTAGATCTGCAAGTC 58.119 47.619 11.58 4.90 33.76 3.01
3980 4289 0.109597 CTGCAACAACCCGATGAAGC 60.110 55.000 0.00 0.00 0.00 3.86
4006 4315 6.019779 GGATACTCACAGAATATCGCTCTT 57.980 41.667 0.00 0.00 0.00 2.85
4053 4362 4.830600 TGATGGGAAGTGAAAACCCTTTAC 59.169 41.667 0.00 0.00 43.59 2.01
4177 4486 8.667463 GCCAAACATGCTTTAACATTAAATCAT 58.333 29.630 7.36 7.36 38.99 2.45
4178 4487 7.148672 CGCCAAACATGCTTTAACATTAAATCA 60.149 33.333 0.00 3.80 34.50 2.57
4201 4510 2.700694 GTGTGTAAATGATAACGCGCC 58.299 47.619 5.73 0.00 31.98 6.53
4202 4511 2.350616 CGTGTGTAAATGATAACGCGC 58.649 47.619 5.73 0.00 39.33 6.86
4204 4513 7.942145 ATAAAACGTGTGTAAATGATAACGC 57.058 32.000 0.00 0.00 34.54 4.84
4212 4521 8.128582 CCTGATGCATATAAAACGTGTGTAAAT 58.871 33.333 0.00 0.00 0.00 1.40
4249 4559 1.972660 GATCGGGTCTTGGGTCCAGG 61.973 65.000 0.00 0.00 0.00 4.45
4303 4613 2.090267 AGAGGACCTTGGAGGATATGCT 60.090 50.000 0.00 0.00 37.67 3.79
4335 4645 7.554211 CGGAGGGAGTAACTACTAAAATCTTT 58.446 38.462 0.00 0.00 36.50 2.52
4361 4674 9.314321 TGATCTAAACGGTCTGATATTTCTTTC 57.686 33.333 0.00 0.00 0.00 2.62
4362 4675 9.099454 GTGATCTAAACGGTCTGATATTTCTTT 57.901 33.333 0.00 0.00 0.00 2.52
4363 4676 8.478877 AGTGATCTAAACGGTCTGATATTTCTT 58.521 33.333 0.00 0.00 0.00 2.52
4364 4677 8.012957 AGTGATCTAAACGGTCTGATATTTCT 57.987 34.615 0.00 0.00 0.00 2.52
4365 4678 9.182933 GTAGTGATCTAAACGGTCTGATATTTC 57.817 37.037 0.00 0.00 0.00 2.17
4366 4679 8.915036 AGTAGTGATCTAAACGGTCTGATATTT 58.085 33.333 0.00 0.00 0.00 1.40
4372 4685 5.562506 TCAGTAGTGATCTAAACGGTCTG 57.437 43.478 0.00 0.00 0.00 3.51
4384 4697 6.458232 AAGAGCGTTTAGATCAGTAGTGAT 57.542 37.500 13.00 13.00 46.75 3.06
4385 4698 5.899120 AAGAGCGTTTAGATCAGTAGTGA 57.101 39.130 1.95 1.95 37.82 3.41
4386 4699 9.900710 AATATAAGAGCGTTTAGATCAGTAGTG 57.099 33.333 0.00 0.00 37.82 2.74
4398 4711 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
4399 4712 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
4400 4713 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
4401 4714 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
4402 4715 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
4418 4819 8.822805 TCAAACTTTAACATATACTCCCTCTGT 58.177 33.333 0.00 0.00 0.00 3.41
4419 4820 9.838339 ATCAAACTTTAACATATACTCCCTCTG 57.162 33.333 0.00 0.00 0.00 3.35
4579 4980 5.321927 TGTCTTCAGATACAGGTGTGTAGA 58.678 41.667 0.00 0.00 42.53 2.59
4682 5088 5.340803 TGACGATACAGATTAGTCAAGCAC 58.659 41.667 0.00 0.00 38.66 4.40
4724 5133 5.995897 AGGAGGATATGCACCGTTTATTTAC 59.004 40.000 5.09 0.00 0.00 2.01
4752 5161 1.061546 AACAAGCTAAACGGAGGGGA 58.938 50.000 0.00 0.00 0.00 4.81
4753 5162 1.165270 CAACAAGCTAAACGGAGGGG 58.835 55.000 0.00 0.00 0.00 4.79
4754 5163 1.165270 CCAACAAGCTAAACGGAGGG 58.835 55.000 0.00 0.00 0.00 4.30
4766 5175 3.316308 CACTTCTCCCAAAGACCAACAAG 59.684 47.826 0.00 0.00 32.27 3.16
4797 5208 2.239150 GGAGATGGATGGATGGATGGAG 59.761 54.545 0.00 0.00 0.00 3.86
4808 5219 7.901283 AGAGATGTATAGATGGAGATGGATG 57.099 40.000 0.00 0.00 0.00 3.51
4809 5220 8.760735 CAAAGAGATGTATAGATGGAGATGGAT 58.239 37.037 0.00 0.00 0.00 3.41
4812 5223 9.421806 GAACAAAGAGATGTATAGATGGAGATG 57.578 37.037 0.00 0.00 32.02 2.90
4813 5224 9.152327 TGAACAAAGAGATGTATAGATGGAGAT 57.848 33.333 0.00 0.00 32.02 2.75
4817 5228 9.133627 CGTATGAACAAAGAGATGTATAGATGG 57.866 37.037 0.00 0.00 32.02 3.51
5142 5597 5.242838 CAGAACTAGTCTTGAGTCTTGGTCT 59.757 44.000 0.00 2.62 34.72 3.85
5279 5736 5.701290 GGCTAGTCTTAGTGATGTTGTTGTT 59.299 40.000 0.00 0.00 0.00 2.83
5289 5746 5.464069 TCCCATTATGGCTAGTCTTAGTGA 58.536 41.667 12.55 0.00 35.79 3.41
5292 5749 7.233757 AGTTACTCCCATTATGGCTAGTCTTAG 59.766 40.741 17.07 0.00 35.79 2.18
5293 5750 7.073854 AGTTACTCCCATTATGGCTAGTCTTA 58.926 38.462 17.07 5.85 35.79 2.10
5295 5752 5.468658 AGTTACTCCCATTATGGCTAGTCT 58.531 41.667 17.07 9.36 35.79 3.24
5296 5753 5.810080 AGTTACTCCCATTATGGCTAGTC 57.190 43.478 17.07 7.70 35.79 2.59
5298 5755 5.230942 CGAAGTTACTCCCATTATGGCTAG 58.769 45.833 5.57 7.90 35.79 3.42
5299 5756 4.039973 CCGAAGTTACTCCCATTATGGCTA 59.960 45.833 5.57 0.00 35.79 3.93
5301 5758 3.139077 CCGAAGTTACTCCCATTATGGC 58.861 50.000 5.57 0.00 35.79 4.40
5302 5759 4.417426 ACCGAAGTTACTCCCATTATGG 57.583 45.455 3.85 3.85 37.25 2.74
5303 5760 6.158023 ACTACCGAAGTTACTCCCATTATG 57.842 41.667 0.00 0.00 33.35 1.90
5304 5761 7.902920 TTACTACCGAAGTTACTCCCATTAT 57.097 36.000 0.00 0.00 39.80 1.28
5305 5762 7.902920 ATTACTACCGAAGTTACTCCCATTA 57.097 36.000 0.00 0.00 39.80 1.90
5306 5763 6.803366 ATTACTACCGAAGTTACTCCCATT 57.197 37.500 0.00 0.00 39.80 3.16
5307 5764 7.094463 CGATATTACTACCGAAGTTACTCCCAT 60.094 40.741 0.00 0.00 39.80 4.00
5308 5765 6.205464 CGATATTACTACCGAAGTTACTCCCA 59.795 42.308 0.00 0.00 39.80 4.37
5309 5766 6.428159 TCGATATTACTACCGAAGTTACTCCC 59.572 42.308 0.00 0.00 39.80 4.30
5310 5767 7.172361 ACTCGATATTACTACCGAAGTTACTCC 59.828 40.741 0.00 0.00 39.80 3.85
5311 5768 8.082334 ACTCGATATTACTACCGAAGTTACTC 57.918 38.462 0.00 0.00 39.80 2.59
5312 5769 7.172361 GGACTCGATATTACTACCGAAGTTACT 59.828 40.741 0.00 0.00 39.80 2.24
5313 5770 7.041780 TGGACTCGATATTACTACCGAAGTTAC 60.042 40.741 0.00 0.00 39.80 2.50
5314 5771 6.992123 TGGACTCGATATTACTACCGAAGTTA 59.008 38.462 0.00 0.00 39.80 2.24
5315 5772 5.824624 TGGACTCGATATTACTACCGAAGTT 59.175 40.000 0.00 0.00 39.80 2.66
5316 5773 5.371526 TGGACTCGATATTACTACCGAAGT 58.628 41.667 0.00 0.00 42.62 3.01
5317 5774 5.936686 TGGACTCGATATTACTACCGAAG 57.063 43.478 0.00 0.00 0.00 3.79
5318 5775 5.824624 AGTTGGACTCGATATTACTACCGAA 59.175 40.000 0.00 0.00 0.00 4.30
5319 5776 5.371526 AGTTGGACTCGATATTACTACCGA 58.628 41.667 0.00 0.00 0.00 4.69
5320 5777 5.686159 AGTTGGACTCGATATTACTACCG 57.314 43.478 0.00 0.00 0.00 4.02
5333 5790 5.444663 AGCAAATTTTCTGAGTTGGACTC 57.555 39.130 1.21 1.21 45.26 3.36
5334 5791 5.859205 AAGCAAATTTTCTGAGTTGGACT 57.141 34.783 0.00 0.00 0.00 3.85
5335 5792 7.115378 CACATAAGCAAATTTTCTGAGTTGGAC 59.885 37.037 0.00 0.00 0.00 4.02
5336 5793 7.147312 CACATAAGCAAATTTTCTGAGTTGGA 58.853 34.615 0.00 0.00 0.00 3.53
5337 5794 6.366877 CCACATAAGCAAATTTTCTGAGTTGG 59.633 38.462 0.00 0.00 0.00 3.77
5338 5795 6.128742 GCCACATAAGCAAATTTTCTGAGTTG 60.129 38.462 0.00 0.00 0.00 3.16
5339 5796 5.928264 GCCACATAAGCAAATTTTCTGAGTT 59.072 36.000 0.00 0.00 0.00 3.01
5340 5797 5.010922 TGCCACATAAGCAAATTTTCTGAGT 59.989 36.000 0.00 0.00 37.28 3.41
5341 5798 5.472148 TGCCACATAAGCAAATTTTCTGAG 58.528 37.500 0.00 0.00 37.28 3.35
5342 5799 5.465532 TGCCACATAAGCAAATTTTCTGA 57.534 34.783 0.00 0.00 37.28 3.27
5352 5809 7.201812 CCTTATTAACTCATTGCCACATAAGCA 60.202 37.037 0.00 0.00 38.81 3.91
5353 5810 7.013274 TCCTTATTAACTCATTGCCACATAAGC 59.987 37.037 0.00 0.00 0.00 3.09
5354 5811 8.450578 TCCTTATTAACTCATTGCCACATAAG 57.549 34.615 0.00 0.00 0.00 1.73
5355 5812 8.271458 TCTCCTTATTAACTCATTGCCACATAA 58.729 33.333 0.00 0.00 0.00 1.90
5356 5813 7.801104 TCTCCTTATTAACTCATTGCCACATA 58.199 34.615 0.00 0.00 0.00 2.29
5357 5814 6.662755 TCTCCTTATTAACTCATTGCCACAT 58.337 36.000 0.00 0.00 0.00 3.21
5358 5815 6.061022 TCTCCTTATTAACTCATTGCCACA 57.939 37.500 0.00 0.00 0.00 4.17
5359 5816 6.349300 TCTCTCCTTATTAACTCATTGCCAC 58.651 40.000 0.00 0.00 0.00 5.01
5360 5817 6.560003 TCTCTCCTTATTAACTCATTGCCA 57.440 37.500 0.00 0.00 0.00 4.92
5361 5818 6.995091 ACATCTCTCCTTATTAACTCATTGCC 59.005 38.462 0.00 0.00 0.00 4.52
5362 5819 9.202273 CTACATCTCTCCTTATTAACTCATTGC 57.798 37.037 0.00 0.00 0.00 3.56
5377 5834 8.992073 GCTAAGTTACTAGTACTACATCTCTCC 58.008 40.741 0.91 0.00 0.00 3.71
5378 5835 9.768662 AGCTAAGTTACTAGTACTACATCTCTC 57.231 37.037 0.91 0.00 0.00 3.20
5397 5854 8.118976 TGTGATGTTACAGTAACTAGCTAAGT 57.881 34.615 21.56 0.00 41.49 2.24
5398 5855 9.025020 CATGTGATGTTACAGTAACTAGCTAAG 57.975 37.037 21.56 6.36 39.38 2.18
5399 5856 8.528643 ACATGTGATGTTACAGTAACTAGCTAA 58.471 33.333 21.56 3.59 41.63 3.09
5400 5857 8.063200 ACATGTGATGTTACAGTAACTAGCTA 57.937 34.615 21.56 4.25 41.63 3.32
5401 5858 6.936279 ACATGTGATGTTACAGTAACTAGCT 58.064 36.000 21.56 6.57 41.63 3.32
5402 5859 6.255887 GGACATGTGATGTTACAGTAACTAGC 59.744 42.308 21.56 12.59 45.03 3.42
5403 5860 6.757010 GGGACATGTGATGTTACAGTAACTAG 59.243 42.308 21.56 8.25 45.03 2.57
5404 5861 6.211785 TGGGACATGTGATGTTACAGTAACTA 59.788 38.462 21.56 10.50 45.03 2.24
5405 5862 5.012664 TGGGACATGTGATGTTACAGTAACT 59.987 40.000 21.56 9.41 45.03 2.24
5406 5863 5.242434 TGGGACATGTGATGTTACAGTAAC 58.758 41.667 15.58 15.58 45.03 2.50
5407 5864 5.491323 TGGGACATGTGATGTTACAGTAA 57.509 39.130 1.15 0.00 45.03 2.24
5408 5865 5.491323 TTGGGACATGTGATGTTACAGTA 57.509 39.130 1.15 0.00 45.03 2.74
5409 5866 4.365514 TTGGGACATGTGATGTTACAGT 57.634 40.909 1.15 0.00 45.03 3.55
5410 5867 4.439153 GCATTGGGACATGTGATGTTACAG 60.439 45.833 1.15 0.00 45.03 2.74
5411 5868 3.443329 GCATTGGGACATGTGATGTTACA 59.557 43.478 1.15 0.00 45.03 2.41
5412 5869 3.443329 TGCATTGGGACATGTGATGTTAC 59.557 43.478 1.15 0.00 45.03 2.50
5413 5870 3.694926 TGCATTGGGACATGTGATGTTA 58.305 40.909 1.15 0.00 45.03 2.41
5414 5871 2.527497 TGCATTGGGACATGTGATGTT 58.473 42.857 1.15 0.00 45.03 2.71
5416 5873 3.812156 ATTGCATTGGGACATGTGATG 57.188 42.857 1.15 3.48 39.30 3.07
5417 5874 5.141910 TCATATTGCATTGGGACATGTGAT 58.858 37.500 1.15 0.00 39.30 3.06
5418 5875 4.534797 TCATATTGCATTGGGACATGTGA 58.465 39.130 1.15 0.00 39.30 3.58
5419 5876 4.340097 ACTCATATTGCATTGGGACATGTG 59.660 41.667 1.15 0.00 39.30 3.21
5420 5877 4.539726 ACTCATATTGCATTGGGACATGT 58.460 39.130 0.00 0.00 39.30 3.21
5421 5878 4.825634 AGACTCATATTGCATTGGGACATG 59.174 41.667 0.00 0.00 39.30 3.21
5422 5879 5.057843 AGACTCATATTGCATTGGGACAT 57.942 39.130 0.00 0.00 39.30 3.06
5423 5880 4.508551 AGACTCATATTGCATTGGGACA 57.491 40.909 0.00 0.00 0.00 4.02
5424 5881 7.119846 GGTTATAGACTCATATTGCATTGGGAC 59.880 40.741 0.00 0.00 0.00 4.46
5425 5882 7.017551 AGGTTATAGACTCATATTGCATTGGGA 59.982 37.037 0.00 0.00 0.00 4.37
5426 5883 7.170965 AGGTTATAGACTCATATTGCATTGGG 58.829 38.462 0.00 0.00 0.00 4.12
5427 5884 9.725019 TTAGGTTATAGACTCATATTGCATTGG 57.275 33.333 0.00 0.00 0.00 3.16
5445 5902 9.754382 CATGCAAAGCTTCATTTATTAGGTTAT 57.246 29.630 0.00 0.00 0.00 1.89
5446 5903 8.748412 ACATGCAAAGCTTCATTTATTAGGTTA 58.252 29.630 0.00 0.00 0.00 2.85
5447 5904 7.614494 ACATGCAAAGCTTCATTTATTAGGTT 58.386 30.769 0.00 0.00 0.00 3.50
5448 5905 7.174107 ACATGCAAAGCTTCATTTATTAGGT 57.826 32.000 0.00 0.00 0.00 3.08
5449 5906 9.023967 GTAACATGCAAAGCTTCATTTATTAGG 57.976 33.333 0.00 0.00 0.00 2.69
5450 5907 9.023967 GGTAACATGCAAAGCTTCATTTATTAG 57.976 33.333 0.00 0.00 0.00 1.73
5451 5908 8.526978 TGGTAACATGCAAAGCTTCATTTATTA 58.473 29.630 0.00 0.00 46.17 0.98
5452 5909 7.385267 TGGTAACATGCAAAGCTTCATTTATT 58.615 30.769 0.00 0.00 46.17 1.40
5453 5910 6.934056 TGGTAACATGCAAAGCTTCATTTAT 58.066 32.000 0.00 0.00 46.17 1.40
5454 5911 6.338214 TGGTAACATGCAAAGCTTCATTTA 57.662 33.333 0.00 0.18 46.17 1.40
5455 5912 5.212532 TGGTAACATGCAAAGCTTCATTT 57.787 34.783 0.00 1.04 46.17 2.32
5456 5913 4.870123 TGGTAACATGCAAAGCTTCATT 57.130 36.364 0.00 0.00 46.17 2.57
5471 5928 8.699130 AGTGGGTAGTAATATAAGTGTGGTAAC 58.301 37.037 0.00 0.00 0.00 2.50
5472 5929 8.843308 AGTGGGTAGTAATATAAGTGTGGTAA 57.157 34.615 0.00 0.00 0.00 2.85
5474 5931 9.443365 AATAGTGGGTAGTAATATAAGTGTGGT 57.557 33.333 0.00 0.00 0.00 4.16
5475 5932 9.706691 CAATAGTGGGTAGTAATATAAGTGTGG 57.293 37.037 0.00 0.00 0.00 4.17
5486 5943 9.925545 TGTTACTATCTCAATAGTGGGTAGTAA 57.074 33.333 15.22 15.22 46.07 2.24
5491 5948 9.080097 GACTATGTTACTATCTCAATAGTGGGT 57.920 37.037 8.07 0.10 46.07 4.51
5492 5949 9.303116 AGACTATGTTACTATCTCAATAGTGGG 57.697 37.037 8.07 0.00 46.07 4.61
5506 5963 9.517868 GTACACATATCCCTAGACTATGTTACT 57.482 37.037 8.30 0.00 34.66 2.24
5507 5964 8.449397 CGTACACATATCCCTAGACTATGTTAC 58.551 40.741 8.30 11.26 34.66 2.50
5508 5965 8.159447 ACGTACACATATCCCTAGACTATGTTA 58.841 37.037 8.30 4.54 34.66 2.41
5509 5966 7.002879 ACGTACACATATCCCTAGACTATGTT 58.997 38.462 8.30 5.15 34.66 2.71
5510 5967 6.540995 ACGTACACATATCCCTAGACTATGT 58.459 40.000 0.00 0.00 36.72 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.