Multiple sequence alignment - TraesCS1B01G194200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G194200 chr1B 100.000 2791 0 0 1 2791 349540423 349543213 0.000000e+00 5155.0
1 TraesCS1B01G194200 chr1D 91.224 980 82 4 921 1898 262303612 262302635 0.000000e+00 1330.0
2 TraesCS1B01G194200 chr1D 89.189 259 27 1 1519 1776 262294417 262294159 3.470000e-84 322.0
3 TraesCS1B01G194200 chr1D 78.614 332 46 11 2448 2776 262302204 262301895 2.190000e-46 196.0
4 TraesCS1B01G194200 chr1A 90.603 979 90 2 921 1898 337655591 337656568 0.000000e+00 1297.0
5 TraesCS1B01G194200 chr1A 83.039 283 26 8 2526 2791 337656814 337657091 1.290000e-58 237.0
6 TraesCS1B01G194200 chr5B 98.806 670 8 0 1 670 512208182 512207513 0.000000e+00 1194.0
7 TraesCS1B01G194200 chr5B 91.304 253 21 1 671 923 348580747 348580496 7.400000e-91 344.0
8 TraesCS1B01G194200 chr5B 90.945 254 23 0 671 924 411086340 411086593 2.660000e-90 342.0
9 TraesCS1B01G194200 chr7B 96.137 673 23 1 1 670 498257774 498258446 0.000000e+00 1096.0
10 TraesCS1B01G194200 chr7B 95.188 665 31 1 1 665 100396097 100396760 0.000000e+00 1050.0
11 TraesCS1B01G194200 chr5A 94.993 679 25 2 1 671 644141223 644141900 0.000000e+00 1057.0
12 TraesCS1B01G194200 chr5A 91.339 254 20 2 671 923 510187815 510187563 2.060000e-91 346.0
13 TraesCS1B01G194200 chr5A 91.304 253 21 1 671 923 60205914 60206165 7.400000e-91 344.0
14 TraesCS1B01G194200 chr5A 91.304 253 21 1 671 923 673688796 673688545 7.400000e-91 344.0
15 TraesCS1B01G194200 chr2A 94.453 685 27 4 1 676 653043421 653044103 0.000000e+00 1044.0
16 TraesCS1B01G194200 chr2A 92.490 253 18 1 671 923 723523280 723523029 7.350000e-96 361.0
17 TraesCS1B01G194200 chr2A 77.833 203 41 4 476 676 48691971 48692171 3.780000e-24 122.0
18 TraesCS1B01G194200 chr6A 84.902 457 48 13 232 671 266095948 266096400 2.550000e-120 442.0
19 TraesCS1B01G194200 chr6A 85.000 60 7 2 2055 2112 72571034 72571093 3.000000e-05 60.2
20 TraesCS1B01G194200 chr4B 92.126 254 19 1 671 924 129713267 129713015 9.510000e-95 357.0
21 TraesCS1B01G194200 chr4B 80.571 350 64 3 982 1330 471776100 471775754 1.650000e-67 267.0
22 TraesCS1B01G194200 chr2B 91.051 257 22 1 671 927 694533898 694533643 2.060000e-91 346.0
23 TraesCS1B01G194200 chr2B 90.196 51 4 1 2055 2105 152752045 152751996 6.450000e-07 65.8
24 TraesCS1B01G194200 chr6B 91.304 253 21 1 671 923 87526034 87526285 7.400000e-91 344.0
25 TraesCS1B01G194200 chr4D 80.508 354 65 4 982 1333 384951462 384951111 4.580000e-68 268.0
26 TraesCS1B01G194200 chr7A 78.488 344 65 9 993 1332 671219713 671219375 1.680000e-52 217.0
27 TraesCS1B01G194200 chr7A 92.308 52 2 2 2055 2106 699065622 699065671 3.860000e-09 73.1
28 TraesCS1B01G194200 chr7A 90.196 51 4 1 2055 2105 679315819 679315868 6.450000e-07 65.8
29 TraesCS1B01G194200 chr3B 79.310 319 58 6 1010 1324 720183224 720182910 1.680000e-52 217.0
30 TraesCS1B01G194200 chr3B 77.914 326 65 6 1001 1324 720178219 720177899 2.190000e-46 196.0
31 TraesCS1B01G194200 chr3D 78.095 315 64 4 1011 1324 544277947 544277637 7.890000e-46 195.0
32 TraesCS1B01G194200 chr3D 90.196 51 4 1 2055 2105 565200109 565200060 6.450000e-07 65.8
33 TraesCS1B01G194200 chr3D 90.196 51 4 1 2055 2105 565203609 565203560 6.450000e-07 65.8
34 TraesCS1B01G194200 chr3D 90.196 51 4 1 2055 2105 565247529 565247480 6.450000e-07 65.8
35 TraesCS1B01G194200 chr3A 76.218 349 73 8 984 1327 681396033 681396376 2.860000e-40 176.0
36 TraesCS1B01G194200 chr3A 79.235 183 34 4 491 671 720684966 720684786 1.050000e-24 124.0
37 TraesCS1B01G194200 chr3A 92.157 51 3 1 2055 2105 61433091 61433140 1.390000e-08 71.3
38 TraesCS1B01G194200 chr6D 77.665 197 40 4 476 670 325603219 325603413 1.760000e-22 117.0
39 TraesCS1B01G194200 chrUn 87.500 56 5 2 2055 2110 53927918 53927865 2.320000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G194200 chr1B 349540423 349543213 2790 False 5155 5155 100.000 1 2791 1 chr1B.!!$F1 2790
1 TraesCS1B01G194200 chr1D 262301895 262303612 1717 True 763 1330 84.919 921 2776 2 chr1D.!!$R2 1855
2 TraesCS1B01G194200 chr1A 337655591 337657091 1500 False 767 1297 86.821 921 2791 2 chr1A.!!$F1 1870
3 TraesCS1B01G194200 chr5B 512207513 512208182 669 True 1194 1194 98.806 1 670 1 chr5B.!!$R2 669
4 TraesCS1B01G194200 chr7B 498257774 498258446 672 False 1096 1096 96.137 1 670 1 chr7B.!!$F2 669
5 TraesCS1B01G194200 chr7B 100396097 100396760 663 False 1050 1050 95.188 1 665 1 chr7B.!!$F1 664
6 TraesCS1B01G194200 chr5A 644141223 644141900 677 False 1057 1057 94.993 1 671 1 chr5A.!!$F2 670
7 TraesCS1B01G194200 chr2A 653043421 653044103 682 False 1044 1044 94.453 1 676 1 chr2A.!!$F2 675

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
809 822 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.0 0.0 0.0 41.36 2.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2051 2121 0.031043 GCGATGCATGCAGCCATAAA 59.969 50.0 28.76 0.91 44.83 1.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
204 208 0.463474 AGTAGTAGACGAGCCGGTCC 60.463 60.000 1.90 0.00 37.66 4.46
457 469 3.365265 CAACAAGCCGAGGCACCC 61.365 66.667 17.18 0.00 44.88 4.61
672 685 2.848071 ACCGTATCCAAACAACCCCTAT 59.152 45.455 0.00 0.00 0.00 2.57
674 687 4.474287 ACCGTATCCAAACAACCCCTATAA 59.526 41.667 0.00 0.00 0.00 0.98
675 688 5.061179 CCGTATCCAAACAACCCCTATAAG 58.939 45.833 0.00 0.00 0.00 1.73
676 689 5.397109 CCGTATCCAAACAACCCCTATAAGT 60.397 44.000 0.00 0.00 0.00 2.24
677 690 5.756833 CGTATCCAAACAACCCCTATAAGTC 59.243 44.000 0.00 0.00 0.00 3.01
678 691 5.789574 ATCCAAACAACCCCTATAAGTCA 57.210 39.130 0.00 0.00 0.00 3.41
679 692 5.789574 TCCAAACAACCCCTATAAGTCAT 57.210 39.130 0.00 0.00 0.00 3.06
680 693 6.894735 TCCAAACAACCCCTATAAGTCATA 57.105 37.500 0.00 0.00 0.00 2.15
681 694 7.460214 TCCAAACAACCCCTATAAGTCATAT 57.540 36.000 0.00 0.00 0.00 1.78
682 695 7.514721 TCCAAACAACCCCTATAAGTCATATC 58.485 38.462 0.00 0.00 0.00 1.63
683 696 7.349859 TCCAAACAACCCCTATAAGTCATATCT 59.650 37.037 0.00 0.00 0.00 1.98
684 697 7.445402 CCAAACAACCCCTATAAGTCATATCTG 59.555 40.741 0.00 0.00 0.00 2.90
685 698 7.691993 AACAACCCCTATAAGTCATATCTGT 57.308 36.000 0.00 0.00 0.00 3.41
686 699 7.691993 ACAACCCCTATAAGTCATATCTGTT 57.308 36.000 0.00 0.00 0.00 3.16
687 700 8.102484 ACAACCCCTATAAGTCATATCTGTTT 57.898 34.615 0.00 0.00 0.00 2.83
688 701 7.993183 ACAACCCCTATAAGTCATATCTGTTTG 59.007 37.037 0.00 0.00 0.00 2.93
689 702 7.079451 ACCCCTATAAGTCATATCTGTTTGG 57.921 40.000 0.00 0.00 0.00 3.28
690 703 5.940470 CCCCTATAAGTCATATCTGTTTGGC 59.060 44.000 0.00 0.00 0.00 4.52
691 704 6.240002 CCCCTATAAGTCATATCTGTTTGGCT 60.240 42.308 0.00 0.00 0.00 4.75
692 705 6.652481 CCCTATAAGTCATATCTGTTTGGCTG 59.348 42.308 0.00 0.00 0.00 4.85
693 706 7.220030 CCTATAAGTCATATCTGTTTGGCTGT 58.780 38.462 0.00 0.00 0.00 4.40
694 707 7.386299 CCTATAAGTCATATCTGTTTGGCTGTC 59.614 40.741 0.00 0.00 0.00 3.51
695 708 4.558226 AGTCATATCTGTTTGGCTGTCA 57.442 40.909 0.00 0.00 0.00 3.58
696 709 4.256920 AGTCATATCTGTTTGGCTGTCAC 58.743 43.478 0.00 0.00 0.00 3.67
697 710 3.375299 GTCATATCTGTTTGGCTGTCACC 59.625 47.826 0.00 0.00 0.00 4.02
698 711 3.264193 TCATATCTGTTTGGCTGTCACCT 59.736 43.478 0.00 0.00 0.00 4.00
699 712 4.469586 TCATATCTGTTTGGCTGTCACCTA 59.530 41.667 0.00 0.00 0.00 3.08
700 713 3.788227 ATCTGTTTGGCTGTCACCTAA 57.212 42.857 0.00 0.00 0.00 2.69
701 714 2.846193 TCTGTTTGGCTGTCACCTAAC 58.154 47.619 9.90 9.90 43.21 2.34
702 715 2.438021 TCTGTTTGGCTGTCACCTAACT 59.562 45.455 14.62 0.00 43.28 2.24
703 716 3.118038 TCTGTTTGGCTGTCACCTAACTT 60.118 43.478 14.62 0.00 43.28 2.66
704 717 4.101898 TCTGTTTGGCTGTCACCTAACTTA 59.898 41.667 14.62 5.63 43.28 2.24
705 718 4.980573 TGTTTGGCTGTCACCTAACTTAT 58.019 39.130 14.62 0.00 43.28 1.73
706 719 6.014070 TCTGTTTGGCTGTCACCTAACTTATA 60.014 38.462 14.62 1.55 43.28 0.98
707 720 6.535540 TGTTTGGCTGTCACCTAACTTATAA 58.464 36.000 14.62 0.00 43.28 0.98
708 721 6.653320 TGTTTGGCTGTCACCTAACTTATAAG 59.347 38.462 11.05 11.05 43.28 1.73
709 722 6.368779 TTGGCTGTCACCTAACTTATAAGT 57.631 37.500 12.50 12.50 42.04 2.24
710 723 5.974108 TGGCTGTCACCTAACTTATAAGTC 58.026 41.667 18.28 5.10 38.57 3.01
711 724 5.482526 TGGCTGTCACCTAACTTATAAGTCA 59.517 40.000 18.28 3.22 38.57 3.41
712 725 5.811100 GGCTGTCACCTAACTTATAAGTCAC 59.189 44.000 18.28 8.99 38.57 3.67
713 726 6.351117 GGCTGTCACCTAACTTATAAGTCACT 60.351 42.308 18.28 6.09 38.57 3.41
714 727 7.097834 GCTGTCACCTAACTTATAAGTCACTT 58.902 38.462 18.28 5.74 38.57 3.16
715 728 7.063544 GCTGTCACCTAACTTATAAGTCACTTG 59.936 40.741 18.28 12.99 38.57 3.16
716 729 8.185506 TGTCACCTAACTTATAAGTCACTTGA 57.814 34.615 18.28 14.78 38.57 3.02
717 730 8.812972 TGTCACCTAACTTATAAGTCACTTGAT 58.187 33.333 18.28 3.97 38.57 2.57
718 731 9.303537 GTCACCTAACTTATAAGTCACTTGATC 57.696 37.037 18.28 9.80 38.57 2.92
719 732 9.031537 TCACCTAACTTATAAGTCACTTGATCA 57.968 33.333 18.28 0.00 38.57 2.92
720 733 9.088512 CACCTAACTTATAAGTCACTTGATCAC 57.911 37.037 18.28 0.00 38.57 3.06
721 734 8.812972 ACCTAACTTATAAGTCACTTGATCACA 58.187 33.333 18.28 0.00 38.57 3.58
722 735 9.307121 CCTAACTTATAAGTCACTTGATCACAG 57.693 37.037 18.28 0.00 38.57 3.66
723 736 7.602517 AACTTATAAGTCACTTGATCACAGC 57.397 36.000 18.28 0.00 38.57 4.40
724 737 6.940739 ACTTATAAGTCACTTGATCACAGCT 58.059 36.000 12.50 0.00 32.86 4.24
725 738 7.390027 ACTTATAAGTCACTTGATCACAGCTT 58.610 34.615 12.50 0.00 32.86 3.74
726 739 7.880195 ACTTATAAGTCACTTGATCACAGCTTT 59.120 33.333 12.50 0.00 32.86 3.51
727 740 6.734104 ATAAGTCACTTGATCACAGCTTTC 57.266 37.500 0.00 0.00 0.00 2.62
728 741 3.406764 AGTCACTTGATCACAGCTTTCC 58.593 45.455 0.00 0.00 0.00 3.13
729 742 2.158449 GTCACTTGATCACAGCTTTCCG 59.842 50.000 0.00 0.00 0.00 4.30
730 743 1.135859 CACTTGATCACAGCTTTCCGC 60.136 52.381 0.00 0.00 39.57 5.54
731 744 1.159285 CTTGATCACAGCTTTCCGCA 58.841 50.000 0.00 0.00 42.61 5.69
732 745 0.874390 TTGATCACAGCTTTCCGCAC 59.126 50.000 0.00 0.00 42.61 5.34
733 746 0.955428 TGATCACAGCTTTCCGCACC 60.955 55.000 0.00 0.00 42.61 5.01
734 747 0.955428 GATCACAGCTTTCCGCACCA 60.955 55.000 0.00 0.00 42.61 4.17
735 748 0.537143 ATCACAGCTTTCCGCACCAA 60.537 50.000 0.00 0.00 42.61 3.67
736 749 0.537143 TCACAGCTTTCCGCACCAAT 60.537 50.000 0.00 0.00 42.61 3.16
737 750 0.314935 CACAGCTTTCCGCACCAATT 59.685 50.000 0.00 0.00 42.61 2.32
738 751 0.598065 ACAGCTTTCCGCACCAATTC 59.402 50.000 0.00 0.00 42.61 2.17
739 752 0.597568 CAGCTTTCCGCACCAATTCA 59.402 50.000 0.00 0.00 42.61 2.57
740 753 0.598065 AGCTTTCCGCACCAATTCAC 59.402 50.000 0.00 0.00 42.61 3.18
741 754 0.313672 GCTTTCCGCACCAATTCACA 59.686 50.000 0.00 0.00 38.92 3.58
742 755 1.067635 GCTTTCCGCACCAATTCACAT 60.068 47.619 0.00 0.00 38.92 3.21
743 756 2.867429 CTTTCCGCACCAATTCACATC 58.133 47.619 0.00 0.00 0.00 3.06
744 757 1.902938 TTCCGCACCAATTCACATCA 58.097 45.000 0.00 0.00 0.00 3.07
745 758 2.127271 TCCGCACCAATTCACATCAT 57.873 45.000 0.00 0.00 0.00 2.45
746 759 1.744522 TCCGCACCAATTCACATCATG 59.255 47.619 0.00 0.00 0.00 3.07
747 760 1.552226 CGCACCAATTCACATCATGC 58.448 50.000 0.00 0.00 0.00 4.06
748 761 1.135344 CGCACCAATTCACATCATGCA 60.135 47.619 0.00 0.00 0.00 3.96
749 762 2.480587 CGCACCAATTCACATCATGCAT 60.481 45.455 0.00 0.00 0.00 3.96
750 763 2.863740 GCACCAATTCACATCATGCATG 59.136 45.455 21.07 21.07 38.64 4.06
757 770 3.983229 ACATCATGCATGTGGTGGA 57.017 47.368 25.43 6.27 44.70 4.02
758 771 2.219080 ACATCATGCATGTGGTGGAA 57.781 45.000 25.43 5.50 44.70 3.53
759 772 1.820519 ACATCATGCATGTGGTGGAAC 59.179 47.619 25.43 0.00 44.70 3.62
760 773 3.468052 ACATCATGCATGTGGTGGAACC 61.468 50.000 25.43 0.00 44.57 3.62
771 784 1.362355 GTGGAACCCACGCAAAAGG 59.638 57.895 0.00 0.00 44.95 3.11
779 792 2.923837 ACGCAAAAGGGGGTGACT 59.076 55.556 0.00 0.00 32.17 3.41
780 793 1.229076 ACGCAAAAGGGGGTGACTT 59.771 52.632 0.00 0.00 32.17 3.01
781 794 0.475044 ACGCAAAAGGGGGTGACTTA 59.525 50.000 0.00 0.00 32.17 2.24
782 795 1.074889 ACGCAAAAGGGGGTGACTTAT 59.925 47.619 0.00 0.00 32.17 1.73
783 796 2.306512 ACGCAAAAGGGGGTGACTTATA 59.693 45.455 0.00 0.00 32.17 0.98
784 797 3.244981 ACGCAAAAGGGGGTGACTTATAA 60.245 43.478 0.00 0.00 32.17 0.98
785 798 3.377172 CGCAAAAGGGGGTGACTTATAAG 59.623 47.826 11.05 11.05 0.00 1.73
786 799 4.341487 GCAAAAGGGGGTGACTTATAAGT 58.659 43.478 18.05 18.05 43.16 2.24
787 800 4.770531 GCAAAAGGGGGTGACTTATAAGTT 59.229 41.667 18.96 3.63 39.88 2.66
788 801 5.245301 GCAAAAGGGGGTGACTTATAAGTTT 59.755 40.000 18.96 5.24 39.88 2.66
789 802 6.239487 GCAAAAGGGGGTGACTTATAAGTTTT 60.239 38.462 18.96 10.67 39.88 2.43
790 803 7.039574 GCAAAAGGGGGTGACTTATAAGTTTTA 60.040 37.037 18.96 6.80 39.88 1.52
791 804 8.862085 CAAAAGGGGGTGACTTATAAGTTTTAA 58.138 33.333 18.96 3.77 39.88 1.52
792 805 8.645814 AAAGGGGGTGACTTATAAGTTTTAAG 57.354 34.615 18.96 10.49 39.88 1.85
793 806 7.339177 AGGGGGTGACTTATAAGTTTTAAGT 57.661 36.000 18.96 15.86 41.41 2.24
794 807 7.762610 AGGGGGTGACTTATAAGTTTTAAGTT 58.237 34.615 18.96 2.13 39.40 2.66
795 808 7.668469 AGGGGGTGACTTATAAGTTTTAAGTTG 59.332 37.037 18.96 0.00 39.40 3.16
796 809 7.094075 GGGGGTGACTTATAAGTTTTAAGTTGG 60.094 40.741 18.96 0.00 39.40 3.77
797 810 7.094075 GGGGTGACTTATAAGTTTTAAGTTGGG 60.094 40.741 18.96 0.00 39.40 4.12
798 811 7.094075 GGGTGACTTATAAGTTTTAAGTTGGGG 60.094 40.741 18.96 0.00 39.40 4.96
799 812 7.449395 GGTGACTTATAAGTTTTAAGTTGGGGT 59.551 37.037 18.96 0.00 39.40 4.95
800 813 8.294577 GTGACTTATAAGTTTTAAGTTGGGGTG 58.705 37.037 18.96 0.00 39.40 4.61
801 814 7.449086 TGACTTATAAGTTTTAAGTTGGGGTGG 59.551 37.037 18.96 0.00 39.40 4.61
802 815 7.528675 ACTTATAAGTTTTAAGTTGGGGTGGA 58.471 34.615 12.50 0.00 36.70 4.02
803 816 7.668469 ACTTATAAGTTTTAAGTTGGGGTGGAG 59.332 37.037 12.50 0.00 36.70 3.86
804 817 2.594131 AGTTTTAAGTTGGGGTGGAGC 58.406 47.619 0.00 0.00 0.00 4.70
805 818 2.091555 AGTTTTAAGTTGGGGTGGAGCA 60.092 45.455 0.00 0.00 0.00 4.26
806 819 2.696187 GTTTTAAGTTGGGGTGGAGCAA 59.304 45.455 0.00 0.00 0.00 3.91
807 820 1.989706 TTAAGTTGGGGTGGAGCAAC 58.010 50.000 0.00 0.00 0.00 4.17
808 821 1.145571 TAAGTTGGGGTGGAGCAACT 58.854 50.000 0.00 0.00 39.27 3.16
809 822 0.261696 AAGTTGGGGTGGAGCAACTT 59.738 50.000 0.00 0.00 41.36 2.66
810 823 1.145571 AGTTGGGGTGGAGCAACTTA 58.854 50.000 0.00 0.00 34.63 2.24
811 824 1.710809 AGTTGGGGTGGAGCAACTTAT 59.289 47.619 0.00 0.00 34.63 1.73
812 825 1.818674 GTTGGGGTGGAGCAACTTATG 59.181 52.381 0.00 0.00 0.00 1.90
813 826 1.367346 TGGGGTGGAGCAACTTATGA 58.633 50.000 0.00 0.00 0.00 2.15
814 827 1.004277 TGGGGTGGAGCAACTTATGAC 59.996 52.381 0.00 0.00 0.00 3.06
815 828 1.282157 GGGGTGGAGCAACTTATGACT 59.718 52.381 0.00 0.00 0.00 3.41
816 829 2.290960 GGGGTGGAGCAACTTATGACTT 60.291 50.000 0.00 0.00 0.00 3.01
817 830 3.054655 GGGGTGGAGCAACTTATGACTTA 60.055 47.826 0.00 0.00 0.00 2.24
818 831 4.385310 GGGGTGGAGCAACTTATGACTTAT 60.385 45.833 0.00 0.00 0.00 1.73
819 832 5.163237 GGGGTGGAGCAACTTATGACTTATA 60.163 44.000 0.00 0.00 0.00 0.98
820 833 6.354130 GGGTGGAGCAACTTATGACTTATAA 58.646 40.000 0.00 0.00 0.00 0.98
833 846 9.877178 CTTATGACTTATAAGTTGAGGTGACTT 57.123 33.333 18.96 5.26 41.37 3.01
843 856 5.805728 AGTTGAGGTGACTTATAAGTTGGG 58.194 41.667 18.96 0.00 44.43 4.12
844 857 5.309806 AGTTGAGGTGACTTATAAGTTGGGT 59.690 40.000 18.96 5.53 44.43 4.51
845 858 5.416271 TGAGGTGACTTATAAGTTGGGTC 57.584 43.478 18.96 13.62 44.43 4.46
846 859 5.091552 TGAGGTGACTTATAAGTTGGGTCT 58.908 41.667 18.96 12.01 44.43 3.85
847 860 5.046591 TGAGGTGACTTATAAGTTGGGTCTG 60.047 44.000 18.96 0.00 44.43 3.51
848 861 4.844655 AGGTGACTTATAAGTTGGGTCTGT 59.155 41.667 18.96 0.00 39.88 3.41
849 862 5.309806 AGGTGACTTATAAGTTGGGTCTGTT 59.690 40.000 18.96 0.00 39.88 3.16
850 863 6.002082 GGTGACTTATAAGTTGGGTCTGTTT 58.998 40.000 18.96 0.00 39.88 2.83
851 864 6.072673 GGTGACTTATAAGTTGGGTCTGTTTG 60.073 42.308 18.96 0.00 39.88 2.93
852 865 6.708949 GTGACTTATAAGTTGGGTCTGTTTGA 59.291 38.462 18.96 0.00 39.88 2.69
853 866 6.708949 TGACTTATAAGTTGGGTCTGTTTGAC 59.291 38.462 18.96 2.46 41.15 3.18
854 867 6.597562 ACTTATAAGTTGGGTCTGTTTGACA 58.402 36.000 12.50 0.00 40.94 3.58
855 868 7.057894 ACTTATAAGTTGGGTCTGTTTGACAA 58.942 34.615 12.50 0.00 40.94 3.18
856 869 7.558444 ACTTATAAGTTGGGTCTGTTTGACAAA 59.442 33.333 12.50 0.00 40.94 2.83
865 878 6.183360 TGGGTCTGTTTGACAAAATAAGTCAC 60.183 38.462 1.27 1.48 44.95 3.67
866 879 6.039382 GGGTCTGTTTGACAAAATAAGTCACT 59.961 38.462 1.27 0.00 44.95 3.41
867 880 7.416326 GGGTCTGTTTGACAAAATAAGTCACTT 60.416 37.037 1.27 0.00 44.95 3.16
868 881 7.973944 GGTCTGTTTGACAAAATAAGTCACTTT 59.026 33.333 1.27 0.00 44.95 2.66
869 882 9.353999 GTCTGTTTGACAAAATAAGTCACTTTT 57.646 29.630 1.27 0.00 44.95 2.27
870 883 9.921637 TCTGTTTGACAAAATAAGTCACTTTTT 57.078 25.926 1.27 0.00 44.95 1.94
894 907 9.667989 TTTTTACTTTTCGACTTATAAGTTGGC 57.332 29.630 25.99 11.58 39.88 4.52
895 908 5.526010 ACTTTTCGACTTATAAGTTGGCG 57.474 39.130 25.99 20.68 39.88 5.69
896 909 5.232463 ACTTTTCGACTTATAAGTTGGCGA 58.768 37.500 25.99 22.23 39.88 5.54
897 910 5.119743 ACTTTTCGACTTATAAGTTGGCGAC 59.880 40.000 25.99 10.35 39.88 5.19
898 911 4.445452 TTCGACTTATAAGTTGGCGACT 57.555 40.909 25.99 0.18 39.88 4.18
909 922 4.499037 AGTTGGCGACTTATTTGAAACC 57.501 40.909 0.18 0.00 33.92 3.27
910 923 3.886505 AGTTGGCGACTTATTTGAAACCA 59.113 39.130 0.18 0.00 33.92 3.67
911 924 4.339814 AGTTGGCGACTTATTTGAAACCAA 59.660 37.500 0.18 0.00 33.92 3.67
912 925 4.920640 TGGCGACTTATTTGAAACCAAA 57.079 36.364 0.00 0.00 37.85 3.28
913 926 4.612943 TGGCGACTTATTTGAAACCAAAC 58.387 39.130 0.00 0.00 36.48 2.93
914 927 4.098044 TGGCGACTTATTTGAAACCAAACA 59.902 37.500 0.00 0.00 36.48 2.83
915 928 5.044558 GGCGACTTATTTGAAACCAAACAA 58.955 37.500 0.00 0.00 36.48 2.83
916 929 5.174943 GGCGACTTATTTGAAACCAAACAAG 59.825 40.000 7.21 7.21 41.39 3.16
917 930 5.332280 GCGACTTATTTGAAACCAAACAAGC 60.332 40.000 8.34 2.71 40.07 4.01
918 931 5.174943 CGACTTATTTGAAACCAAACAAGCC 59.825 40.000 8.34 0.00 40.07 4.35
919 932 5.364778 ACTTATTTGAAACCAAACAAGCCC 58.635 37.500 8.34 0.00 40.07 5.19
931 944 4.559153 CAAACAAGCCCTAAACATCCAAG 58.441 43.478 0.00 0.00 0.00 3.61
932 945 3.525800 ACAAGCCCTAAACATCCAAGT 57.474 42.857 0.00 0.00 0.00 3.16
935 948 4.202524 ACAAGCCCTAAACATCCAAGTACA 60.203 41.667 0.00 0.00 0.00 2.90
972 985 5.471556 TTGATTTCAGCACATTGAACCAT 57.528 34.783 0.00 0.00 36.84 3.55
1050 1063 1.244019 GCTTGTCGGTGAGCCCATTT 61.244 55.000 0.00 0.00 32.80 2.32
1167 1180 0.115745 ACCCGGTGGAGAAGAAGGTA 59.884 55.000 0.00 0.00 34.81 3.08
1183 1196 1.006281 AGGTACCCGTACTCATCCACA 59.994 52.381 8.74 0.00 36.36 4.17
1209 1222 3.372954 CAAGACCATACTCGATTCGTCC 58.627 50.000 5.89 0.00 0.00 4.79
1338 1352 3.181514 ACGACAAGGTTTGTGTTTTCTCG 60.182 43.478 0.00 0.00 45.52 4.04
1347 1361 2.750948 TGTGTTTTCTCGTACCTCAGC 58.249 47.619 0.00 0.00 0.00 4.26
1360 1374 2.334023 ACCTCAGCTCAGTCTTCCTTT 58.666 47.619 0.00 0.00 0.00 3.11
1361 1375 3.511477 ACCTCAGCTCAGTCTTCCTTTA 58.489 45.455 0.00 0.00 0.00 1.85
1368 1382 6.892456 TCAGCTCAGTCTTCCTTTATCTTCTA 59.108 38.462 0.00 0.00 0.00 2.10
1388 1402 6.296365 TCTAGATTGTACTTACATCGACGG 57.704 41.667 0.00 0.00 35.89 4.79
1414 1428 1.122632 TTGTGTCTTCCCCGCCTACA 61.123 55.000 0.00 0.00 0.00 2.74
1425 1439 1.737793 CCCGCCTACACTGTCAAATTC 59.262 52.381 0.00 0.00 0.00 2.17
1427 1441 2.416547 CCGCCTACACTGTCAAATTCTG 59.583 50.000 0.00 0.00 0.00 3.02
1428 1442 2.416547 CGCCTACACTGTCAAATTCTGG 59.583 50.000 0.00 0.00 0.00 3.86
1433 1447 3.489355 ACACTGTCAAATTCTGGCATGA 58.511 40.909 0.00 0.00 39.46 3.07
1442 1456 5.359009 TCAAATTCTGGCATGATCTTCCTTC 59.641 40.000 0.00 0.00 0.00 3.46
1454 1468 5.215069 TGATCTTCCTTCCAGCTATTCTCT 58.785 41.667 0.00 0.00 0.00 3.10
1474 1488 6.504398 TCTCTGCTTATGTCGGTGTTAATAG 58.496 40.000 0.00 0.00 0.00 1.73
1478 1492 5.163447 TGCTTATGTCGGTGTTAATAGAGCT 60.163 40.000 0.00 0.00 0.00 4.09
1481 1495 4.644103 TGTCGGTGTTAATAGAGCTACC 57.356 45.455 0.00 0.00 0.00 3.18
1498 1512 3.775654 CACGGAGGTGGAGAGGGC 61.776 72.222 0.00 0.00 40.58 5.19
1510 1524 1.192428 GAGAGGGCGGAGAAGGTTAA 58.808 55.000 0.00 0.00 0.00 2.01
1522 1536 2.035576 AGAAGGTTAACGAGACGCTTGT 59.964 45.455 0.00 0.00 0.00 3.16
1527 1541 0.319211 TAACGAGACGCTTGTGGTGG 60.319 55.000 0.00 0.00 0.00 4.61
1562 1576 4.157817 GCATTTGCCAAGCACTCG 57.842 55.556 0.00 0.00 38.71 4.18
1660 1674 3.453222 CGCAACGCAAGATGTTTGA 57.547 47.368 0.00 0.00 42.80 2.69
1673 1687 1.374560 TGTTTGACGTGGTGTTCCTG 58.625 50.000 0.00 0.00 34.23 3.86
1691 1705 4.373116 GACGCCGGCAAGACTCCA 62.373 66.667 28.98 0.00 0.00 3.86
1762 1776 2.126189 GGTACCCGACACAGACGC 60.126 66.667 0.00 0.00 0.00 5.19
1775 1789 0.525668 CAGACGCGGTGATGGAGTAC 60.526 60.000 12.47 0.00 0.00 2.73
1847 1861 1.537202 GCCAAGTGAAACGCTTCAGAT 59.463 47.619 0.51 0.00 45.86 2.90
1880 1895 5.131067 TGAGTATCGACTACCAAGCATAGT 58.869 41.667 0.00 0.00 38.61 2.12
1917 1984 1.723542 CGCACTGAACACTTGCTCTAG 59.276 52.381 0.00 0.00 33.90 2.43
1924 1991 4.371786 TGAACACTTGCTCTAGACAACAG 58.628 43.478 0.00 0.00 0.00 3.16
1951 2018 2.500098 TGTGAGGGGTATAAGAGTGTGC 59.500 50.000 0.00 0.00 0.00 4.57
1957 2024 4.532521 AGGGGTATAAGAGTGTGCCATATC 59.467 45.833 0.00 0.00 0.00 1.63
1961 2028 7.097834 GGGTATAAGAGTGTGCCATATCTTAC 58.902 42.308 11.46 6.39 37.15 2.34
1985 2052 2.801935 ACTTATATTGGAGGGGGCCTT 58.198 47.619 0.84 0.00 31.76 4.35
1990 2057 0.046397 ATTGGAGGGGGCCTTCTAGT 59.954 55.000 0.84 0.00 31.76 2.57
1998 2065 1.340991 GGGGCCTTCTAGTGCAATGAA 60.341 52.381 0.84 0.00 0.00 2.57
1999 2066 2.019984 GGGCCTTCTAGTGCAATGAAG 58.980 52.381 15.05 15.05 37.51 3.02
2003 2070 4.383118 GGCCTTCTAGTGCAATGAAGAGTA 60.383 45.833 20.41 0.00 39.42 2.59
2004 2071 5.363939 GCCTTCTAGTGCAATGAAGAGTAT 58.636 41.667 20.41 0.00 39.42 2.12
2015 2082 9.410556 GTGCAATGAAGAGTATGTTATGTTTTT 57.589 29.630 0.00 0.00 0.00 1.94
2038 2108 7.865706 TTAAAGCCATCTAGGTTCAAATCTC 57.134 36.000 0.00 0.00 40.61 2.75
2043 2113 5.455899 GCCATCTAGGTTCAAATCTCTCCAT 60.456 44.000 0.00 0.00 40.61 3.41
2049 2119 4.410555 AGGTTCAAATCTCTCCATCTACCC 59.589 45.833 0.00 0.00 0.00 3.69
2051 2121 5.163152 GGTTCAAATCTCTCCATCTACCCAT 60.163 44.000 0.00 0.00 0.00 4.00
2053 2123 6.581388 TCAAATCTCTCCATCTACCCATTT 57.419 37.500 0.00 0.00 0.00 2.32
2055 2125 8.280258 TCAAATCTCTCCATCTACCCATTTAT 57.720 34.615 0.00 0.00 0.00 1.40
2056 2126 8.159447 TCAAATCTCTCCATCTACCCATTTATG 58.841 37.037 0.00 0.00 0.00 1.90
2058 2128 4.287067 TCTCTCCATCTACCCATTTATGGC 59.713 45.833 3.11 0.00 46.70 4.40
2059 2129 4.242811 TCTCCATCTACCCATTTATGGCT 58.757 43.478 3.11 0.00 46.70 4.75
2060 2130 4.042062 TCTCCATCTACCCATTTATGGCTG 59.958 45.833 3.11 0.00 46.70 4.85
2061 2131 2.821969 CCATCTACCCATTTATGGCTGC 59.178 50.000 3.11 0.00 46.70 5.25
2062 2132 3.489355 CATCTACCCATTTATGGCTGCA 58.511 45.455 0.50 0.00 46.70 4.41
2063 2133 3.882102 TCTACCCATTTATGGCTGCAT 57.118 42.857 0.50 0.00 46.70 3.96
2064 2134 3.489355 TCTACCCATTTATGGCTGCATG 58.511 45.455 0.50 0.00 46.70 4.06
2065 2135 0.754472 ACCCATTTATGGCTGCATGC 59.246 50.000 11.82 11.82 46.70 4.06
2066 2136 0.753867 CCCATTTATGGCTGCATGCA 59.246 50.000 21.29 21.29 46.70 3.96
2067 2137 1.346395 CCCATTTATGGCTGCATGCAT 59.654 47.619 22.97 9.00 46.70 3.96
2068 2138 2.611971 CCCATTTATGGCTGCATGCATC 60.612 50.000 22.97 17.75 46.70 3.91
2069 2139 2.324860 CATTTATGGCTGCATGCATCG 58.675 47.619 22.97 12.00 45.15 3.84
2070 2140 0.031043 TTTATGGCTGCATGCATCGC 59.969 50.000 22.97 21.54 45.15 4.58
2071 2141 0.820482 TTATGGCTGCATGCATCGCT 60.820 50.000 25.56 13.41 45.15 4.93
2072 2142 1.232621 TATGGCTGCATGCATCGCTC 61.233 55.000 25.56 17.89 45.15 5.03
2073 2143 3.206957 GGCTGCATGCATCGCTCA 61.207 61.111 25.56 1.92 45.15 4.26
2074 2144 2.328289 GCTGCATGCATCGCTCAG 59.672 61.111 22.97 8.76 42.31 3.35
2075 2145 2.178235 GCTGCATGCATCGCTCAGA 61.178 57.895 22.97 0.00 42.31 3.27
2076 2146 1.507974 GCTGCATGCATCGCTCAGAT 61.508 55.000 22.97 0.00 42.31 2.90
2084 2154 2.514129 ATCGCTCAGATGCAGAGGT 58.486 52.632 3.87 0.00 38.36 3.85
2085 2155 0.388659 ATCGCTCAGATGCAGAGGTC 59.611 55.000 3.87 0.00 38.36 3.85
2086 2156 1.227205 CGCTCAGATGCAGAGGTCC 60.227 63.158 3.87 0.00 33.72 4.46
2087 2157 1.227205 GCTCAGATGCAGAGGTCCG 60.227 63.158 3.87 0.00 33.72 4.79
2088 2158 1.440893 CTCAGATGCAGAGGTCCGG 59.559 63.158 0.00 0.00 0.00 5.14
2089 2159 2.025767 CTCAGATGCAGAGGTCCGGG 62.026 65.000 0.00 0.00 0.00 5.73
2090 2160 2.060383 CAGATGCAGAGGTCCGGGA 61.060 63.158 0.00 0.00 0.00 5.14
2091 2161 1.074926 AGATGCAGAGGTCCGGGAT 60.075 57.895 0.00 0.00 0.00 3.85
2092 2162 0.188587 AGATGCAGAGGTCCGGGATA 59.811 55.000 0.00 0.00 0.00 2.59
2093 2163 0.318762 GATGCAGAGGTCCGGGATAC 59.681 60.000 0.00 0.00 0.00 2.24
2094 2164 0.398522 ATGCAGAGGTCCGGGATACA 60.399 55.000 0.00 0.00 39.74 2.29
2095 2165 0.398522 TGCAGAGGTCCGGGATACAT 60.399 55.000 0.00 0.00 39.74 2.29
2096 2166 0.318762 GCAGAGGTCCGGGATACATC 59.681 60.000 0.00 0.00 39.74 3.06
2097 2167 0.969894 CAGAGGTCCGGGATACATCC 59.030 60.000 0.00 0.00 46.41 3.51
2098 2168 0.861155 AGAGGTCCGGGATACATCCT 59.139 55.000 0.00 0.61 46.35 3.24
2099 2169 1.220750 AGAGGTCCGGGATACATCCTT 59.779 52.381 0.00 0.00 46.35 3.36
2100 2170 2.047830 GAGGTCCGGGATACATCCTTT 58.952 52.381 0.00 0.00 46.35 3.11
2101 2171 2.438392 GAGGTCCGGGATACATCCTTTT 59.562 50.000 0.00 0.00 46.35 2.27
2102 2172 2.850568 AGGTCCGGGATACATCCTTTTT 59.149 45.455 0.00 0.00 46.35 1.94
2137 2207 9.612066 TTTCTAAAAGTAACGAAGTAAAAGGGA 57.388 29.630 0.00 0.00 45.00 4.20
2138 2208 8.822652 TCTAAAAGTAACGAAGTAAAAGGGAG 57.177 34.615 0.00 0.00 45.00 4.30
2139 2209 8.641541 TCTAAAAGTAACGAAGTAAAAGGGAGA 58.358 33.333 0.00 0.00 45.00 3.71
2140 2210 7.725818 AAAAGTAACGAAGTAAAAGGGAGAG 57.274 36.000 0.00 0.00 45.00 3.20
2141 2211 6.661304 AAGTAACGAAGTAAAAGGGAGAGA 57.339 37.500 0.00 0.00 45.00 3.10
2142 2212 6.270156 AGTAACGAAGTAAAAGGGAGAGAG 57.730 41.667 0.00 0.00 45.00 3.20
2143 2213 3.596310 ACGAAGTAAAAGGGAGAGAGC 57.404 47.619 0.00 0.00 41.94 4.09
2144 2214 3.166679 ACGAAGTAAAAGGGAGAGAGCT 58.833 45.455 0.00 0.00 41.94 4.09
2145 2215 3.579151 ACGAAGTAAAAGGGAGAGAGCTT 59.421 43.478 0.00 0.00 41.94 3.74
2146 2216 4.040584 ACGAAGTAAAAGGGAGAGAGCTTT 59.959 41.667 0.00 0.00 41.94 3.51
2147 2217 4.627900 CGAAGTAAAAGGGAGAGAGCTTTC 59.372 45.833 0.00 0.00 0.00 2.62
2148 2218 4.561500 AGTAAAAGGGAGAGAGCTTTCC 57.438 45.455 0.00 2.59 0.00 3.13
2149 2219 3.910627 AGTAAAAGGGAGAGAGCTTTCCA 59.089 43.478 9.04 0.00 35.09 3.53
2150 2220 2.869101 AAAGGGAGAGAGCTTTCCAC 57.131 50.000 9.04 1.99 35.09 4.02
2151 2221 2.037385 AAGGGAGAGAGCTTTCCACT 57.963 50.000 9.04 4.02 35.09 4.00
2152 2222 2.037385 AGGGAGAGAGCTTTCCACTT 57.963 50.000 9.04 0.00 35.09 3.16
2153 2223 3.191888 AGGGAGAGAGCTTTCCACTTA 57.808 47.619 9.04 0.00 35.09 2.24
2154 2224 3.103742 AGGGAGAGAGCTTTCCACTTAG 58.896 50.000 9.04 0.00 35.09 2.18
2155 2225 2.169561 GGGAGAGAGCTTTCCACTTAGG 59.830 54.545 9.04 0.00 35.09 2.69
2156 2226 2.419436 GGAGAGAGCTTTCCACTTAGGC 60.419 54.545 0.00 0.00 37.29 3.93
2157 2227 2.499693 GAGAGAGCTTTCCACTTAGGCT 59.500 50.000 0.00 0.00 37.29 4.58
2158 2228 2.909662 AGAGAGCTTTCCACTTAGGCTT 59.090 45.455 0.00 0.00 37.29 4.35
2159 2229 3.006247 GAGAGCTTTCCACTTAGGCTTG 58.994 50.000 0.00 0.00 37.29 4.01
2160 2230 2.373502 AGAGCTTTCCACTTAGGCTTGT 59.626 45.455 0.00 0.00 37.29 3.16
2161 2231 3.149981 GAGCTTTCCACTTAGGCTTGTT 58.850 45.455 0.00 0.00 37.29 2.83
2162 2232 3.566351 AGCTTTCCACTTAGGCTTGTTT 58.434 40.909 0.00 0.00 37.29 2.83
2163 2233 3.570125 AGCTTTCCACTTAGGCTTGTTTC 59.430 43.478 0.00 0.00 37.29 2.78
2164 2234 3.570125 GCTTTCCACTTAGGCTTGTTTCT 59.430 43.478 0.00 0.00 37.29 2.52
2165 2235 4.760204 GCTTTCCACTTAGGCTTGTTTCTA 59.240 41.667 0.00 0.00 37.29 2.10
2166 2236 5.416013 GCTTTCCACTTAGGCTTGTTTCTAT 59.584 40.000 0.00 0.00 37.29 1.98
2167 2237 6.071896 GCTTTCCACTTAGGCTTGTTTCTATT 60.072 38.462 0.00 0.00 37.29 1.73
2168 2238 7.120726 GCTTTCCACTTAGGCTTGTTTCTATTA 59.879 37.037 0.00 0.00 37.29 0.98
2169 2239 8.561738 TTTCCACTTAGGCTTGTTTCTATTAG 57.438 34.615 0.00 0.00 37.29 1.73
2170 2240 7.490657 TCCACTTAGGCTTGTTTCTATTAGA 57.509 36.000 0.00 0.00 37.29 2.10
2171 2241 7.913789 TCCACTTAGGCTTGTTTCTATTAGAA 58.086 34.615 1.90 1.90 37.29 2.10
2172 2242 8.548877 TCCACTTAGGCTTGTTTCTATTAGAAT 58.451 33.333 6.95 0.00 33.64 2.40
2173 2243 9.832445 CCACTTAGGCTTGTTTCTATTAGAATA 57.168 33.333 6.95 0.00 33.67 1.75
2213 2283 4.911514 AAAAACCAACTAACATCAGCGT 57.088 36.364 0.00 0.00 0.00 5.07
2215 2285 5.352643 AAAACCAACTAACATCAGCGTAC 57.647 39.130 0.00 0.00 0.00 3.67
2216 2286 3.671008 ACCAACTAACATCAGCGTACA 57.329 42.857 0.00 0.00 0.00 2.90
2217 2287 4.202245 ACCAACTAACATCAGCGTACAT 57.798 40.909 0.00 0.00 0.00 2.29
2218 2288 3.932710 ACCAACTAACATCAGCGTACATG 59.067 43.478 0.00 0.00 0.00 3.21
2219 2289 3.309682 CCAACTAACATCAGCGTACATGG 59.690 47.826 0.00 0.00 0.00 3.66
2220 2290 2.550978 ACTAACATCAGCGTACATGGC 58.449 47.619 0.00 0.00 0.00 4.40
2221 2291 2.093711 ACTAACATCAGCGTACATGGCA 60.094 45.455 0.00 0.00 0.00 4.92
2222 2292 1.372582 AACATCAGCGTACATGGCAG 58.627 50.000 0.00 0.00 0.00 4.85
2223 2293 0.250234 ACATCAGCGTACATGGCAGT 59.750 50.000 0.00 0.00 0.00 4.40
2224 2294 0.933097 CATCAGCGTACATGGCAGTC 59.067 55.000 0.00 0.00 0.00 3.51
2225 2295 0.536724 ATCAGCGTACATGGCAGTCA 59.463 50.000 0.00 0.00 0.00 3.41
2226 2296 0.320050 TCAGCGTACATGGCAGTCAA 59.680 50.000 0.00 0.00 0.00 3.18
2227 2297 1.155889 CAGCGTACATGGCAGTCAAA 58.844 50.000 0.00 0.00 0.00 2.69
2228 2298 1.535028 CAGCGTACATGGCAGTCAAAA 59.465 47.619 0.00 0.00 0.00 2.44
2229 2299 2.031245 CAGCGTACATGGCAGTCAAAAA 60.031 45.455 0.00 0.00 0.00 1.94
2265 2335 3.443588 GGCAACGGACAAGGCTTT 58.556 55.556 0.00 0.00 0.00 3.51
2266 2336 1.739667 GGCAACGGACAAGGCTTTT 59.260 52.632 0.00 0.00 0.00 2.27
2267 2337 0.597377 GGCAACGGACAAGGCTTTTG 60.597 55.000 0.00 0.05 0.00 2.44
2268 2338 1.215014 GCAACGGACAAGGCTTTTGC 61.215 55.000 15.42 15.42 46.64 3.68
2279 2349 2.917172 GCTTTTGCAATGTGTGGGG 58.083 52.632 0.00 0.00 46.58 4.96
2280 2350 0.106521 GCTTTTGCAATGTGTGGGGT 59.893 50.000 0.00 0.00 46.58 4.95
2281 2351 1.342819 GCTTTTGCAATGTGTGGGGTA 59.657 47.619 0.00 0.00 46.58 3.69
2282 2352 2.224161 GCTTTTGCAATGTGTGGGGTAA 60.224 45.455 0.00 0.00 46.58 2.85
2283 2353 3.389221 CTTTTGCAATGTGTGGGGTAAC 58.611 45.455 0.00 0.00 0.00 2.50
2284 2354 2.073252 TTGCAATGTGTGGGGTAACA 57.927 45.000 0.00 0.00 39.74 2.41
2285 2355 2.300956 TGCAATGTGTGGGGTAACAT 57.699 45.000 0.00 0.00 38.66 2.71
2286 2356 2.603021 TGCAATGTGTGGGGTAACATT 58.397 42.857 0.00 0.00 45.54 2.71
2287 2357 2.968574 TGCAATGTGTGGGGTAACATTT 59.031 40.909 0.00 0.00 42.85 2.32
2288 2358 3.389329 TGCAATGTGTGGGGTAACATTTT 59.611 39.130 0.00 0.00 42.85 1.82
2289 2359 4.141620 TGCAATGTGTGGGGTAACATTTTT 60.142 37.500 0.00 0.00 42.85 1.94
2290 2360 4.213059 GCAATGTGTGGGGTAACATTTTTG 59.787 41.667 0.00 0.00 42.85 2.44
2291 2361 4.615588 ATGTGTGGGGTAACATTTTTGG 57.384 40.909 0.00 0.00 33.19 3.28
2292 2362 3.375699 TGTGTGGGGTAACATTTTTGGT 58.624 40.909 0.00 0.00 39.74 3.67
2293 2363 3.775316 TGTGTGGGGTAACATTTTTGGTT 59.225 39.130 0.00 0.00 39.74 3.67
2294 2364 4.123506 GTGTGGGGTAACATTTTTGGTTG 58.876 43.478 0.00 0.00 39.74 3.77
2295 2365 4.030913 TGTGGGGTAACATTTTTGGTTGA 58.969 39.130 0.00 0.00 39.74 3.18
2296 2366 4.469945 TGTGGGGTAACATTTTTGGTTGAA 59.530 37.500 0.00 0.00 39.74 2.69
2297 2367 5.131142 TGTGGGGTAACATTTTTGGTTGAAT 59.869 36.000 0.00 0.00 39.74 2.57
2298 2368 5.699001 GTGGGGTAACATTTTTGGTTGAATC 59.301 40.000 0.00 0.00 39.74 2.52
2299 2369 5.604650 TGGGGTAACATTTTTGGTTGAATCT 59.395 36.000 0.00 0.00 39.74 2.40
2300 2370 6.782988 TGGGGTAACATTTTTGGTTGAATCTA 59.217 34.615 0.00 0.00 39.74 1.98
2301 2371 7.094631 GGGGTAACATTTTTGGTTGAATCTAC 58.905 38.462 0.00 0.00 39.74 2.59
2302 2372 7.039293 GGGGTAACATTTTTGGTTGAATCTACT 60.039 37.037 0.00 0.00 39.74 2.57
2303 2373 8.027189 GGGTAACATTTTTGGTTGAATCTACTC 58.973 37.037 0.00 0.00 39.74 2.59
2304 2374 7.749126 GGTAACATTTTTGGTTGAATCTACTCG 59.251 37.037 0.00 0.00 0.00 4.18
2305 2375 5.699839 ACATTTTTGGTTGAATCTACTCGC 58.300 37.500 0.00 0.00 0.00 5.03
2306 2376 5.240623 ACATTTTTGGTTGAATCTACTCGCA 59.759 36.000 0.00 0.00 0.00 5.10
2307 2377 5.759506 TTTTTGGTTGAATCTACTCGCAA 57.240 34.783 0.00 0.00 0.00 4.85
2308 2378 5.356882 TTTTGGTTGAATCTACTCGCAAG 57.643 39.130 0.00 0.00 0.00 4.01
2326 2396 7.681939 TCGCAAGATACTAACATTTTCCTTT 57.318 32.000 0.00 0.00 45.01 3.11
2327 2397 7.748847 TCGCAAGATACTAACATTTTCCTTTC 58.251 34.615 0.00 0.00 45.01 2.62
2328 2398 7.389330 TCGCAAGATACTAACATTTTCCTTTCA 59.611 33.333 0.00 0.00 45.01 2.69
2329 2399 7.481798 CGCAAGATACTAACATTTTCCTTTCAC 59.518 37.037 0.00 0.00 43.02 3.18
2330 2400 7.755373 GCAAGATACTAACATTTTCCTTTCACC 59.245 37.037 0.00 0.00 0.00 4.02
2331 2401 7.939784 AGATACTAACATTTTCCTTTCACCC 57.060 36.000 0.00 0.00 0.00 4.61
2332 2402 6.598064 AGATACTAACATTTTCCTTTCACCCG 59.402 38.462 0.00 0.00 0.00 5.28
2333 2403 2.812358 AACATTTTCCTTTCACCCGC 57.188 45.000 0.00 0.00 0.00 6.13
2334 2404 1.698506 ACATTTTCCTTTCACCCGCA 58.301 45.000 0.00 0.00 0.00 5.69
2335 2405 2.035632 ACATTTTCCTTTCACCCGCAA 58.964 42.857 0.00 0.00 0.00 4.85
2336 2406 2.432510 ACATTTTCCTTTCACCCGCAAA 59.567 40.909 0.00 0.00 0.00 3.68
2337 2407 3.118592 ACATTTTCCTTTCACCCGCAAAA 60.119 39.130 0.00 0.00 0.00 2.44
2338 2408 3.611766 TTTTCCTTTCACCCGCAAAAA 57.388 38.095 0.00 0.00 0.00 1.94
2339 2409 2.880963 TTCCTTTCACCCGCAAAAAG 57.119 45.000 0.00 0.00 0.00 2.27
2340 2410 2.060050 TCCTTTCACCCGCAAAAAGA 57.940 45.000 0.00 0.00 32.89 2.52
2341 2411 2.379972 TCCTTTCACCCGCAAAAAGAA 58.620 42.857 0.00 0.00 32.89 2.52
2342 2412 2.761208 TCCTTTCACCCGCAAAAAGAAA 59.239 40.909 0.00 0.00 32.89 2.52
2343 2413 3.195825 TCCTTTCACCCGCAAAAAGAAAA 59.804 39.130 0.00 0.00 32.89 2.29
2344 2414 3.935828 CCTTTCACCCGCAAAAAGAAAAA 59.064 39.130 0.00 0.00 32.89 1.94
2367 2437 8.422577 AAAAGATACTAACATTTCCTTTGGCT 57.577 30.769 0.00 0.00 0.00 4.75
2368 2438 7.631717 AAGATACTAACATTTCCTTTGGCTC 57.368 36.000 0.00 0.00 0.00 4.70
2369 2439 6.721318 AGATACTAACATTTCCTTTGGCTCA 58.279 36.000 0.00 0.00 0.00 4.26
2370 2440 6.599638 AGATACTAACATTTCCTTTGGCTCAC 59.400 38.462 0.00 0.00 0.00 3.51
2371 2441 4.729868 ACTAACATTTCCTTTGGCTCACT 58.270 39.130 0.00 0.00 0.00 3.41
2372 2442 4.520492 ACTAACATTTCCTTTGGCTCACTG 59.480 41.667 0.00 0.00 0.00 3.66
2373 2443 2.949447 ACATTTCCTTTGGCTCACTGT 58.051 42.857 0.00 0.00 0.00 3.55
2374 2444 2.624838 ACATTTCCTTTGGCTCACTGTG 59.375 45.455 0.17 0.17 0.00 3.66
2375 2445 2.727123 TTTCCTTTGGCTCACTGTGA 57.273 45.000 10.50 10.50 0.00 3.58
2376 2446 2.957402 TTCCTTTGGCTCACTGTGAT 57.043 45.000 11.45 0.00 0.00 3.06
2377 2447 2.479566 TCCTTTGGCTCACTGTGATC 57.520 50.000 11.45 7.04 0.00 2.92
2378 2448 1.699083 TCCTTTGGCTCACTGTGATCA 59.301 47.619 11.45 10.03 0.00 2.92
2379 2449 1.808945 CCTTTGGCTCACTGTGATCAC 59.191 52.381 19.27 19.27 0.00 3.06
2380 2450 2.551721 CCTTTGGCTCACTGTGATCACT 60.552 50.000 25.55 4.51 0.00 3.41
2390 2460 7.965107 GGCTCACTGTGATCACTAAATTTTAAG 59.035 37.037 25.55 13.74 0.00 1.85
2460 2790 7.554959 TTACAGAGAATACCAGAGAAGGTTT 57.445 36.000 0.00 0.00 43.08 3.27
2503 2834 7.929941 TTACTGCCATTAATTATGTCACACA 57.070 32.000 0.00 0.00 31.99 3.72
2507 2838 8.965819 ACTGCCATTAATTATGTCACACAATTA 58.034 29.630 0.00 0.00 31.99 1.40
2518 2849 7.750229 ATGTCACACAATTAGTCAGATTTGT 57.250 32.000 0.00 0.00 0.00 2.83
2525 2856 7.285401 ACACAATTAGTCAGATTTGTCTTTGGT 59.715 33.333 0.00 0.00 0.00 3.67
2533 2864 6.476706 GTCAGATTTGTCTTTGGTTTTCAAGG 59.523 38.462 0.00 0.00 36.62 3.61
2534 2865 5.234972 CAGATTTGTCTTTGGTTTTCAAGGC 59.765 40.000 0.00 0.00 36.62 4.35
2558 2889 4.758688 ACTTTGTTTTGCCTCCTGAAAAG 58.241 39.130 0.00 0.00 0.00 2.27
2562 2893 0.951558 TTTGCCTCCTGAAAAGCGAC 59.048 50.000 0.00 0.00 0.00 5.19
2595 2927 4.869861 GCTTTTGGCGTCCAATATCAATTT 59.130 37.500 11.30 0.00 43.55 1.82
2643 2975 7.396055 CCTGGTCCAAAATTTCCTTGATAACTA 59.604 37.037 0.00 0.00 0.00 2.24
2645 2977 8.966868 TGGTCCAAAATTTCCTTGATAACTATC 58.033 33.333 0.00 0.00 0.00 2.08
2671 3017 3.359695 GGTTATGCCCCTAACACTTCA 57.640 47.619 4.10 0.00 34.03 3.02
2677 3023 1.657804 CCCCTAACACTTCAGACCCT 58.342 55.000 0.00 0.00 0.00 4.34
2682 3028 3.072476 CCTAACACTTCAGACCCTTCCAA 59.928 47.826 0.00 0.00 0.00 3.53
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
457 469 4.124351 TGTAGCTTCCCGCCGTCG 62.124 66.667 0.00 0.00 40.39 5.12
672 685 5.874810 GTGACAGCCAAACAGATATGACTTA 59.125 40.000 0.00 0.00 0.00 2.24
674 687 4.256920 GTGACAGCCAAACAGATATGACT 58.743 43.478 0.00 0.00 0.00 3.41
675 688 3.375299 GGTGACAGCCAAACAGATATGAC 59.625 47.826 0.00 0.00 0.00 3.06
676 689 3.264193 AGGTGACAGCCAAACAGATATGA 59.736 43.478 0.00 0.00 0.00 2.15
677 690 3.614092 AGGTGACAGCCAAACAGATATG 58.386 45.455 0.00 0.00 0.00 1.78
678 691 5.045578 AGTTAGGTGACAGCCAAACAGATAT 60.046 40.000 17.70 0.57 0.00 1.63
679 692 4.286032 AGTTAGGTGACAGCCAAACAGATA 59.714 41.667 17.70 0.00 0.00 1.98
680 693 3.073062 AGTTAGGTGACAGCCAAACAGAT 59.927 43.478 17.70 1.12 0.00 2.90
681 694 2.438021 AGTTAGGTGACAGCCAAACAGA 59.562 45.455 17.70 0.00 0.00 3.41
682 695 2.851195 AGTTAGGTGACAGCCAAACAG 58.149 47.619 17.70 0.00 0.00 3.16
683 696 3.290948 AAGTTAGGTGACAGCCAAACA 57.709 42.857 17.70 0.00 0.00 2.83
684 697 6.653740 ACTTATAAGTTAGGTGACAGCCAAAC 59.346 38.462 12.50 10.84 35.21 2.93
685 698 6.775708 ACTTATAAGTTAGGTGACAGCCAAA 58.224 36.000 12.50 0.00 35.21 3.28
686 699 6.014070 TGACTTATAAGTTAGGTGACAGCCAA 60.014 38.462 18.96 0.00 39.88 4.52
687 700 5.482526 TGACTTATAAGTTAGGTGACAGCCA 59.517 40.000 18.96 5.51 39.88 4.75
688 701 5.811100 GTGACTTATAAGTTAGGTGACAGCC 59.189 44.000 18.96 3.05 39.88 4.85
689 702 6.631962 AGTGACTTATAAGTTAGGTGACAGC 58.368 40.000 18.96 0.00 39.88 4.40
690 703 8.304596 TCAAGTGACTTATAAGTTAGGTGACAG 58.695 37.037 18.96 4.76 39.88 3.51
691 704 8.185506 TCAAGTGACTTATAAGTTAGGTGACA 57.814 34.615 18.96 8.01 39.88 3.58
692 705 9.303537 GATCAAGTGACTTATAAGTTAGGTGAC 57.696 37.037 18.96 5.55 39.88 3.67
693 706 9.031537 TGATCAAGTGACTTATAAGTTAGGTGA 57.968 33.333 18.96 18.38 39.88 4.02
694 707 9.088512 GTGATCAAGTGACTTATAAGTTAGGTG 57.911 37.037 18.96 14.43 39.88 4.00
695 708 8.812972 TGTGATCAAGTGACTTATAAGTTAGGT 58.187 33.333 18.96 3.33 39.88 3.08
696 709 9.307121 CTGTGATCAAGTGACTTATAAGTTAGG 57.693 37.037 18.96 8.10 39.88 2.69
697 710 8.812329 GCTGTGATCAAGTGACTTATAAGTTAG 58.188 37.037 18.96 4.47 39.88 2.34
698 711 8.531982 AGCTGTGATCAAGTGACTTATAAGTTA 58.468 33.333 18.96 12.54 39.88 2.24
699 712 7.390027 AGCTGTGATCAAGTGACTTATAAGTT 58.610 34.615 18.96 1.55 39.88 2.66
700 713 6.940739 AGCTGTGATCAAGTGACTTATAAGT 58.059 36.000 18.05 18.05 43.16 2.24
701 714 7.840342 AAGCTGTGATCAAGTGACTTATAAG 57.160 36.000 11.05 11.05 0.00 1.73
702 715 7.334421 GGAAAGCTGTGATCAAGTGACTTATAA 59.666 37.037 0.00 0.00 0.00 0.98
703 716 6.818644 GGAAAGCTGTGATCAAGTGACTTATA 59.181 38.462 0.00 0.00 0.00 0.98
704 717 5.645497 GGAAAGCTGTGATCAAGTGACTTAT 59.355 40.000 0.00 0.00 0.00 1.73
705 718 4.997395 GGAAAGCTGTGATCAAGTGACTTA 59.003 41.667 0.00 0.00 0.00 2.24
706 719 3.817647 GGAAAGCTGTGATCAAGTGACTT 59.182 43.478 0.00 0.00 0.00 3.01
707 720 3.406764 GGAAAGCTGTGATCAAGTGACT 58.593 45.455 0.00 0.00 0.00 3.41
708 721 2.158449 CGGAAAGCTGTGATCAAGTGAC 59.842 50.000 0.00 0.00 0.00 3.67
709 722 2.416747 CGGAAAGCTGTGATCAAGTGA 58.583 47.619 0.00 0.00 0.00 3.41
710 723 1.135859 GCGGAAAGCTGTGATCAAGTG 60.136 52.381 0.00 0.00 44.04 3.16
711 724 1.160137 GCGGAAAGCTGTGATCAAGT 58.840 50.000 0.00 0.00 44.04 3.16
712 725 3.984292 GCGGAAAGCTGTGATCAAG 57.016 52.632 0.00 0.00 44.04 3.02
723 736 2.228582 TGATGTGAATTGGTGCGGAAAG 59.771 45.455 0.00 0.00 0.00 2.62
724 737 2.234143 TGATGTGAATTGGTGCGGAAA 58.766 42.857 0.00 0.00 0.00 3.13
725 738 1.902938 TGATGTGAATTGGTGCGGAA 58.097 45.000 0.00 0.00 0.00 4.30
726 739 1.744522 CATGATGTGAATTGGTGCGGA 59.255 47.619 0.00 0.00 0.00 5.54
727 740 1.799917 GCATGATGTGAATTGGTGCGG 60.800 52.381 0.00 0.00 0.00 5.69
728 741 1.135344 TGCATGATGTGAATTGGTGCG 60.135 47.619 0.00 0.00 34.06 5.34
729 742 2.658373 TGCATGATGTGAATTGGTGC 57.342 45.000 0.00 0.00 0.00 5.01
730 743 4.118093 ACATGCATGATGTGAATTGGTG 57.882 40.909 32.75 2.93 44.12 4.17
739 752 1.820519 GTTCCACCACATGCATGATGT 59.179 47.619 32.75 23.54 46.98 3.06
740 753 1.135527 GGTTCCACCACATGCATGATG 59.864 52.381 32.75 23.69 38.42 3.07
741 754 1.477553 GGTTCCACCACATGCATGAT 58.522 50.000 32.75 14.29 38.42 2.45
742 755 0.611618 GGGTTCCACCACATGCATGA 60.612 55.000 32.75 6.55 41.02 3.07
743 756 0.899253 TGGGTTCCACCACATGCATG 60.899 55.000 25.09 25.09 41.02 4.06
744 757 1.464273 TGGGTTCCACCACATGCAT 59.536 52.632 0.00 0.00 41.02 3.96
745 758 2.930295 TGGGTTCCACCACATGCA 59.070 55.556 0.00 0.00 41.02 3.96
754 767 1.830408 CCCTTTTGCGTGGGTTCCA 60.830 57.895 0.00 0.00 38.65 3.53
755 768 2.570284 CCCCTTTTGCGTGGGTTCC 61.570 63.158 0.00 0.00 41.82 3.62
756 769 2.570284 CCCCCTTTTGCGTGGGTTC 61.570 63.158 0.00 0.00 41.82 3.62
757 770 2.523168 CCCCCTTTTGCGTGGGTT 60.523 61.111 0.00 0.00 41.82 4.11
758 771 3.828023 ACCCCCTTTTGCGTGGGT 61.828 61.111 0.00 0.00 46.50 4.51
759 772 3.302344 CACCCCCTTTTGCGTGGG 61.302 66.667 0.00 0.00 44.03 4.61
760 773 2.203422 TCACCCCCTTTTGCGTGG 60.203 61.111 0.00 0.00 0.00 4.94
761 774 1.106944 AAGTCACCCCCTTTTGCGTG 61.107 55.000 0.00 0.00 0.00 5.34
762 775 0.475044 TAAGTCACCCCCTTTTGCGT 59.525 50.000 0.00 0.00 0.00 5.24
763 776 1.834188 ATAAGTCACCCCCTTTTGCG 58.166 50.000 0.00 0.00 0.00 4.85
764 777 4.341487 ACTTATAAGTCACCCCCTTTTGC 58.659 43.478 12.50 0.00 32.86 3.68
765 778 6.911250 AAACTTATAAGTCACCCCCTTTTG 57.089 37.500 18.28 0.00 38.57 2.44
766 779 9.085645 CTTAAAACTTATAAGTCACCCCCTTTT 57.914 33.333 18.28 13.78 38.57 2.27
767 780 8.229605 ACTTAAAACTTATAAGTCACCCCCTTT 58.770 33.333 18.28 14.40 38.85 3.11
768 781 7.762610 ACTTAAAACTTATAAGTCACCCCCTT 58.237 34.615 18.28 4.77 38.85 3.95
769 782 7.339177 ACTTAAAACTTATAAGTCACCCCCT 57.661 36.000 18.28 0.00 38.85 4.79
770 783 7.094075 CCAACTTAAAACTTATAAGTCACCCCC 60.094 40.741 18.28 0.00 41.49 5.40
771 784 7.094075 CCCAACTTAAAACTTATAAGTCACCCC 60.094 40.741 18.28 0.00 41.49 4.95
772 785 7.094075 CCCCAACTTAAAACTTATAAGTCACCC 60.094 40.741 18.28 0.00 41.49 4.61
773 786 7.449395 ACCCCAACTTAAAACTTATAAGTCACC 59.551 37.037 18.28 0.00 41.49 4.02
774 787 8.294577 CACCCCAACTTAAAACTTATAAGTCAC 58.705 37.037 18.28 0.00 41.49 3.67
775 788 7.449086 CCACCCCAACTTAAAACTTATAAGTCA 59.551 37.037 18.28 4.72 41.49 3.41
776 789 7.666804 TCCACCCCAACTTAAAACTTATAAGTC 59.333 37.037 18.28 0.00 41.49 3.01
777 790 7.528675 TCCACCCCAACTTAAAACTTATAAGT 58.471 34.615 12.50 12.50 43.57 2.24
778 791 7.362660 GCTCCACCCCAACTTAAAACTTATAAG 60.363 40.741 11.05 11.05 36.62 1.73
779 792 6.434965 GCTCCACCCCAACTTAAAACTTATAA 59.565 38.462 0.00 0.00 0.00 0.98
780 793 5.947566 GCTCCACCCCAACTTAAAACTTATA 59.052 40.000 0.00 0.00 0.00 0.98
781 794 4.770531 GCTCCACCCCAACTTAAAACTTAT 59.229 41.667 0.00 0.00 0.00 1.73
782 795 4.146564 GCTCCACCCCAACTTAAAACTTA 58.853 43.478 0.00 0.00 0.00 2.24
783 796 2.963101 GCTCCACCCCAACTTAAAACTT 59.037 45.455 0.00 0.00 0.00 2.66
784 797 2.091555 TGCTCCACCCCAACTTAAAACT 60.092 45.455 0.00 0.00 0.00 2.66
785 798 2.312390 TGCTCCACCCCAACTTAAAAC 58.688 47.619 0.00 0.00 0.00 2.43
786 799 2.696187 GTTGCTCCACCCCAACTTAAAA 59.304 45.455 0.00 0.00 38.55 1.52
787 800 2.091555 AGTTGCTCCACCCCAACTTAAA 60.092 45.455 0.56 0.00 46.86 1.52
788 801 1.497286 AGTTGCTCCACCCCAACTTAA 59.503 47.619 0.56 0.00 46.86 1.85
789 802 1.145571 AGTTGCTCCACCCCAACTTA 58.854 50.000 0.56 0.00 46.86 2.24
790 803 1.930520 AGTTGCTCCACCCCAACTT 59.069 52.632 0.56 0.00 46.86 2.66
791 804 3.674278 AGTTGCTCCACCCCAACT 58.326 55.556 0.56 0.56 44.86 3.16
792 805 1.818674 CATAAGTTGCTCCACCCCAAC 59.181 52.381 0.00 0.00 41.13 3.77
793 806 1.707989 TCATAAGTTGCTCCACCCCAA 59.292 47.619 0.00 0.00 0.00 4.12
794 807 1.004277 GTCATAAGTTGCTCCACCCCA 59.996 52.381 0.00 0.00 0.00 4.96
795 808 1.282157 AGTCATAAGTTGCTCCACCCC 59.718 52.381 0.00 0.00 0.00 4.95
796 809 2.789409 AGTCATAAGTTGCTCCACCC 57.211 50.000 0.00 0.00 0.00 4.61
797 810 7.484035 CTTATAAGTCATAAGTTGCTCCACC 57.516 40.000 4.18 0.00 40.84 4.61
817 830 8.047310 CCCAACTTATAAGTCACCTCAACTTAT 58.953 37.037 18.28 11.86 46.48 1.73
818 831 7.016858 ACCCAACTTATAAGTCACCTCAACTTA 59.983 37.037 18.28 0.00 41.91 2.24
819 832 6.183361 ACCCAACTTATAAGTCACCTCAACTT 60.183 38.462 18.28 0.00 38.57 2.66
820 833 5.309806 ACCCAACTTATAAGTCACCTCAACT 59.690 40.000 18.28 0.00 38.57 3.16
821 834 5.557866 ACCCAACTTATAAGTCACCTCAAC 58.442 41.667 18.28 0.00 38.57 3.18
822 835 5.546499 AGACCCAACTTATAAGTCACCTCAA 59.454 40.000 18.28 0.00 38.57 3.02
823 836 5.046591 CAGACCCAACTTATAAGTCACCTCA 60.047 44.000 18.28 0.00 38.57 3.86
824 837 5.046520 ACAGACCCAACTTATAAGTCACCTC 60.047 44.000 18.28 10.79 38.57 3.85
825 838 4.844655 ACAGACCCAACTTATAAGTCACCT 59.155 41.667 18.28 8.81 38.57 4.00
826 839 5.161943 ACAGACCCAACTTATAAGTCACC 57.838 43.478 18.28 6.90 38.57 4.02
827 840 6.708949 TCAAACAGACCCAACTTATAAGTCAC 59.291 38.462 18.28 8.47 38.57 3.67
828 841 6.708949 GTCAAACAGACCCAACTTATAAGTCA 59.291 38.462 18.28 0.00 41.56 3.41
829 842 7.130303 GTCAAACAGACCCAACTTATAAGTC 57.870 40.000 18.28 6.18 41.56 3.01
843 856 8.911247 AAAGTGACTTATTTTGTCAAACAGAC 57.089 30.769 0.00 0.00 44.63 3.51
844 857 9.921637 AAAAAGTGACTTATTTTGTCAAACAGA 57.078 25.926 0.00 0.00 44.63 3.41
868 881 9.667989 GCCAACTTATAAGTCGAAAAGTAAAAA 57.332 29.630 18.28 0.00 38.57 1.94
869 882 8.011106 CGCCAACTTATAAGTCGAAAAGTAAAA 58.989 33.333 18.28 0.00 38.57 1.52
870 883 7.384660 TCGCCAACTTATAAGTCGAAAAGTAAA 59.615 33.333 18.28 0.00 38.57 2.01
871 884 6.867816 TCGCCAACTTATAAGTCGAAAAGTAA 59.132 34.615 18.28 0.00 38.57 2.24
872 885 6.308766 GTCGCCAACTTATAAGTCGAAAAGTA 59.691 38.462 22.20 4.48 38.57 2.24
873 886 5.119743 GTCGCCAACTTATAAGTCGAAAAGT 59.880 40.000 22.20 4.19 38.57 2.66
874 887 5.347907 AGTCGCCAACTTATAAGTCGAAAAG 59.652 40.000 22.20 11.96 38.57 2.27
875 888 5.232463 AGTCGCCAACTTATAAGTCGAAAA 58.768 37.500 22.20 7.40 38.57 2.29
876 889 4.813027 AGTCGCCAACTTATAAGTCGAAA 58.187 39.130 22.20 6.15 38.57 3.46
877 890 4.445452 AGTCGCCAACTTATAAGTCGAA 57.555 40.909 22.20 9.77 38.57 3.71
878 891 4.445452 AAGTCGCCAACTTATAAGTCGA 57.555 40.909 18.28 18.49 46.55 4.20
887 900 6.628398 TTTGGTTTCAAATAAGTCGCCAACTT 60.628 34.615 4.70 4.70 42.76 2.66
888 901 3.886505 TGGTTTCAAATAAGTCGCCAACT 59.113 39.130 0.00 0.00 41.10 3.16
889 902 4.231718 TGGTTTCAAATAAGTCGCCAAC 57.768 40.909 0.00 0.00 0.00 3.77
890 903 4.920640 TTGGTTTCAAATAAGTCGCCAA 57.079 36.364 0.00 0.00 33.05 4.52
891 904 4.098044 TGTTTGGTTTCAAATAAGTCGCCA 59.902 37.500 0.00 0.00 43.73 5.69
892 905 4.612943 TGTTTGGTTTCAAATAAGTCGCC 58.387 39.130 0.00 0.00 43.73 5.54
898 911 5.622346 AGGGCTTGTTTGGTTTCAAATAA 57.378 34.783 0.00 0.00 43.73 1.40
899 912 6.732896 TTAGGGCTTGTTTGGTTTCAAATA 57.267 33.333 0.00 0.00 43.73 1.40
900 913 5.622346 TTAGGGCTTGTTTGGTTTCAAAT 57.378 34.783 0.00 0.00 43.73 2.32
901 914 5.179533 GTTTAGGGCTTGTTTGGTTTCAAA 58.820 37.500 0.00 0.00 40.23 2.69
902 915 4.223032 TGTTTAGGGCTTGTTTGGTTTCAA 59.777 37.500 0.00 0.00 0.00 2.69
903 916 3.769844 TGTTTAGGGCTTGTTTGGTTTCA 59.230 39.130 0.00 0.00 0.00 2.69
904 917 4.394439 TGTTTAGGGCTTGTTTGGTTTC 57.606 40.909 0.00 0.00 0.00 2.78
905 918 4.202315 GGATGTTTAGGGCTTGTTTGGTTT 60.202 41.667 0.00 0.00 0.00 3.27
906 919 3.323691 GGATGTTTAGGGCTTGTTTGGTT 59.676 43.478 0.00 0.00 0.00 3.67
907 920 2.897326 GGATGTTTAGGGCTTGTTTGGT 59.103 45.455 0.00 0.00 0.00 3.67
908 921 2.896685 TGGATGTTTAGGGCTTGTTTGG 59.103 45.455 0.00 0.00 0.00 3.28
909 922 4.039124 ACTTGGATGTTTAGGGCTTGTTTG 59.961 41.667 0.00 0.00 0.00 2.93
910 923 4.223144 ACTTGGATGTTTAGGGCTTGTTT 58.777 39.130 0.00 0.00 0.00 2.83
911 924 3.844640 ACTTGGATGTTTAGGGCTTGTT 58.155 40.909 0.00 0.00 0.00 2.83
912 925 3.525800 ACTTGGATGTTTAGGGCTTGT 57.474 42.857 0.00 0.00 0.00 3.16
913 926 4.331968 TGTACTTGGATGTTTAGGGCTTG 58.668 43.478 0.00 0.00 0.00 4.01
914 927 4.650972 TGTACTTGGATGTTTAGGGCTT 57.349 40.909 0.00 0.00 0.00 4.35
915 928 4.650972 TTGTACTTGGATGTTTAGGGCT 57.349 40.909 0.00 0.00 0.00 5.19
916 929 4.947388 TCATTGTACTTGGATGTTTAGGGC 59.053 41.667 0.00 0.00 0.00 5.19
917 930 6.603201 ACATCATTGTACTTGGATGTTTAGGG 59.397 38.462 16.08 0.00 45.85 3.53
918 931 7.630242 ACATCATTGTACTTGGATGTTTAGG 57.370 36.000 16.08 0.00 45.85 2.69
931 944 5.469373 TCAATGCGAGAACATCATTGTAC 57.531 39.130 12.16 0.00 44.30 2.90
932 945 6.682423 AATCAATGCGAGAACATCATTGTA 57.318 33.333 12.16 2.90 44.30 2.41
935 948 6.198650 TGAAATCAATGCGAGAACATCATT 57.801 33.333 0.00 0.00 0.00 2.57
972 985 2.287977 TCCGTCTCTCTGTTCTTCCA 57.712 50.000 0.00 0.00 0.00 3.53
1050 1063 1.424403 CCATGCGAACACGAACTACA 58.576 50.000 0.00 0.00 0.00 2.74
1134 1147 1.192146 CCGGGTTGGACTTGAGGAGA 61.192 60.000 0.00 0.00 42.00 3.71
1167 1180 1.209504 CCATTGTGGATGAGTACGGGT 59.790 52.381 0.00 0.00 40.96 5.28
1209 1222 1.811217 CGATGTACTGCACGATGGCG 61.811 60.000 0.00 0.00 44.79 5.69
1338 1352 2.452505 AGGAAGACTGAGCTGAGGTAC 58.547 52.381 4.85 0.00 0.00 3.34
1347 1361 9.748708 CAATCTAGAAGATAAAGGAAGACTGAG 57.251 37.037 0.00 0.00 32.89 3.35
1361 1375 8.283992 CGTCGATGTAAGTACAATCTAGAAGAT 58.716 37.037 0.00 0.00 39.99 2.40
1368 1382 3.129813 TGCCGTCGATGTAAGTACAATCT 59.870 43.478 3.52 0.00 39.99 2.40
1377 1391 1.801771 CAAACCTTGCCGTCGATGTAA 59.198 47.619 3.52 0.00 0.00 2.41
1388 1402 0.673985 GGGGAAGACACAAACCTTGC 59.326 55.000 0.00 0.00 0.00 4.01
1414 1428 4.597004 AGATCATGCCAGAATTTGACAGT 58.403 39.130 0.00 0.00 0.00 3.55
1425 1439 2.573369 CTGGAAGGAAGATCATGCCAG 58.427 52.381 4.74 4.74 35.93 4.85
1427 1441 1.133853 AGCTGGAAGGAAGATCATGCC 60.134 52.381 0.00 0.00 0.00 4.40
1428 1442 2.345124 AGCTGGAAGGAAGATCATGC 57.655 50.000 0.00 0.00 0.00 4.06
1433 1447 4.202346 GCAGAGAATAGCTGGAAGGAAGAT 60.202 45.833 0.00 0.00 34.00 2.40
1442 1456 3.986572 CGACATAAGCAGAGAATAGCTGG 59.013 47.826 0.00 0.00 41.70 4.85
1454 1468 5.047847 GCTCTATTAACACCGACATAAGCA 58.952 41.667 0.00 0.00 0.00 3.91
1481 1495 3.775654 GCCCTCTCCACCTCCGTG 61.776 72.222 0.00 0.00 39.91 4.94
1498 1512 1.892468 CGTCTCGTTAACCTTCTCCG 58.108 55.000 0.00 0.00 0.00 4.63
1510 1524 2.029073 CCACCACAAGCGTCTCGT 59.971 61.111 0.00 0.00 0.00 4.18
1522 1536 0.249868 CTCAAGTTGCTCGACCACCA 60.250 55.000 0.00 0.00 0.00 4.17
1527 1541 1.016653 GCCTCCTCAAGTTGCTCGAC 61.017 60.000 0.00 0.00 0.00 4.20
1562 1576 1.335964 GCAAAGAAGGCCTTTCCGTTC 60.336 52.381 21.54 5.47 42.88 3.95
1660 1674 2.420043 CGTCCAGGAACACCACGT 59.580 61.111 0.00 0.00 0.00 4.49
1691 1705 2.269241 GCCCAAGCCGCTAAGAGT 59.731 61.111 0.00 0.00 0.00 3.24
1762 1776 0.806102 CTTGGCGTACTCCATCACCG 60.806 60.000 5.19 0.00 35.77 4.94
1880 1895 1.946081 TGCGTGATCAGTTTGCTTTCA 59.054 42.857 0.00 0.00 0.00 2.69
1917 1984 1.334869 CCCTCACAAAGCACTGTTGTC 59.665 52.381 0.00 0.00 37.09 3.18
1924 1991 4.192317 CTCTTATACCCCTCACAAAGCAC 58.808 47.826 0.00 0.00 0.00 4.40
1957 2024 6.884836 GCCCCCTCCAATATAAGTTATGTAAG 59.115 42.308 5.61 0.00 0.00 2.34
1961 2028 4.292306 AGGCCCCCTCCAATATAAGTTATG 59.708 45.833 0.00 0.00 0.00 1.90
1971 2038 0.046397 ACTAGAAGGCCCCCTCCAAT 59.954 55.000 0.00 0.00 30.89 3.16
1980 2047 2.941720 CTCTTCATTGCACTAGAAGGCC 59.058 50.000 17.18 0.00 39.30 5.19
1985 2052 8.478066 ACATAACATACTCTTCATTGCACTAGA 58.522 33.333 0.00 0.00 0.00 2.43
2003 2070 9.255029 ACCTAGATGGCTTTAAAAACATAACAT 57.745 29.630 4.74 0.00 40.22 2.71
2004 2071 8.644374 ACCTAGATGGCTTTAAAAACATAACA 57.356 30.769 4.74 0.00 40.22 2.41
2015 2082 7.200434 AGAGATTTGAACCTAGATGGCTTTA 57.800 36.000 0.00 0.00 40.22 1.85
2017 2084 5.397334 GGAGAGATTTGAACCTAGATGGCTT 60.397 44.000 0.00 0.00 40.22 4.35
2018 2085 4.102367 GGAGAGATTTGAACCTAGATGGCT 59.898 45.833 0.00 0.00 40.22 4.75
2019 2086 4.141620 TGGAGAGATTTGAACCTAGATGGC 60.142 45.833 0.00 0.00 40.22 4.40
2020 2087 5.620738 TGGAGAGATTTGAACCTAGATGG 57.379 43.478 0.00 0.00 42.93 3.51
2049 2119 2.324860 CGATGCATGCAGCCATAAATG 58.675 47.619 28.76 10.20 44.83 2.32
2051 2121 0.031043 GCGATGCATGCAGCCATAAA 59.969 50.000 28.76 0.91 44.83 1.40
2053 2123 1.228033 AGCGATGCATGCAGCCATA 60.228 52.632 28.76 2.58 44.83 2.74
2055 2125 3.206957 GAGCGATGCATGCAGCCA 61.207 61.111 28.76 3.84 44.83 4.75
2056 2126 3.182472 CTGAGCGATGCATGCAGCC 62.182 63.158 28.76 20.85 44.83 4.85
2058 2128 0.235926 CATCTGAGCGATGCATGCAG 59.764 55.000 26.69 14.50 42.75 4.41
2059 2129 2.317230 CATCTGAGCGATGCATGCA 58.683 52.632 25.04 25.04 42.75 3.96
2066 2136 0.388659 GACCTCTGCATCTGAGCGAT 59.611 55.000 0.00 0.00 37.31 4.58
2067 2137 1.670949 GGACCTCTGCATCTGAGCGA 61.671 60.000 0.00 0.00 37.31 4.93
2068 2138 1.227205 GGACCTCTGCATCTGAGCG 60.227 63.158 0.00 0.00 37.31 5.03
2069 2139 1.227205 CGGACCTCTGCATCTGAGC 60.227 63.158 0.00 0.00 0.00 4.26
2070 2140 1.440893 CCGGACCTCTGCATCTGAG 59.559 63.158 0.00 0.00 0.00 3.35
2071 2141 2.060383 CCCGGACCTCTGCATCTGA 61.060 63.158 0.73 0.00 0.00 3.27
2072 2142 1.406065 ATCCCGGACCTCTGCATCTG 61.406 60.000 0.73 0.00 0.00 2.90
2073 2143 0.188587 TATCCCGGACCTCTGCATCT 59.811 55.000 0.73 0.00 0.00 2.90
2074 2144 0.318762 GTATCCCGGACCTCTGCATC 59.681 60.000 0.73 0.00 0.00 3.91
2075 2145 0.398522 TGTATCCCGGACCTCTGCAT 60.399 55.000 0.73 0.00 0.00 3.96
2076 2146 0.398522 ATGTATCCCGGACCTCTGCA 60.399 55.000 0.73 0.00 0.00 4.41
2077 2147 0.318762 GATGTATCCCGGACCTCTGC 59.681 60.000 0.73 0.00 0.00 4.26
2078 2148 0.969894 GGATGTATCCCGGACCTCTG 59.030 60.000 0.73 0.00 41.20 3.35
2079 2149 3.459386 GGATGTATCCCGGACCTCT 57.541 57.895 0.73 0.00 41.20 3.69
2111 2181 9.612066 TCCCTTTTACTTCGTTACTTTTAGAAA 57.388 29.630 0.00 0.00 0.00 2.52
2112 2182 9.264719 CTCCCTTTTACTTCGTTACTTTTAGAA 57.735 33.333 0.00 0.00 0.00 2.10
2113 2183 8.641541 TCTCCCTTTTACTTCGTTACTTTTAGA 58.358 33.333 0.00 0.00 0.00 2.10
2114 2184 8.822652 TCTCCCTTTTACTTCGTTACTTTTAG 57.177 34.615 0.00 0.00 0.00 1.85
2115 2185 8.641541 TCTCTCCCTTTTACTTCGTTACTTTTA 58.358 33.333 0.00 0.00 0.00 1.52
2116 2186 7.503549 TCTCTCCCTTTTACTTCGTTACTTTT 58.496 34.615 0.00 0.00 0.00 2.27
2117 2187 7.059202 TCTCTCCCTTTTACTTCGTTACTTT 57.941 36.000 0.00 0.00 0.00 2.66
2118 2188 6.661304 TCTCTCCCTTTTACTTCGTTACTT 57.339 37.500 0.00 0.00 0.00 2.24
2119 2189 5.336610 GCTCTCTCCCTTTTACTTCGTTACT 60.337 44.000 0.00 0.00 0.00 2.24
2120 2190 4.863689 GCTCTCTCCCTTTTACTTCGTTAC 59.136 45.833 0.00 0.00 0.00 2.50
2121 2191 4.771054 AGCTCTCTCCCTTTTACTTCGTTA 59.229 41.667 0.00 0.00 0.00 3.18
2122 2192 3.579151 AGCTCTCTCCCTTTTACTTCGTT 59.421 43.478 0.00 0.00 0.00 3.85
2123 2193 3.166679 AGCTCTCTCCCTTTTACTTCGT 58.833 45.455 0.00 0.00 0.00 3.85
2124 2194 3.878160 AGCTCTCTCCCTTTTACTTCG 57.122 47.619 0.00 0.00 0.00 3.79
2125 2195 4.938832 GGAAAGCTCTCTCCCTTTTACTTC 59.061 45.833 0.00 0.00 31.85 3.01
2126 2196 4.351111 TGGAAAGCTCTCTCCCTTTTACTT 59.649 41.667 6.93 0.00 31.85 2.24
2127 2197 3.910627 TGGAAAGCTCTCTCCCTTTTACT 59.089 43.478 6.93 0.00 31.85 2.24
2128 2198 4.004314 GTGGAAAGCTCTCTCCCTTTTAC 58.996 47.826 6.93 0.00 31.85 2.01
2129 2199 3.910627 AGTGGAAAGCTCTCTCCCTTTTA 59.089 43.478 6.93 0.00 31.85 1.52
2130 2200 2.713708 AGTGGAAAGCTCTCTCCCTTTT 59.286 45.455 6.93 0.00 31.85 2.27
2131 2201 2.343625 AGTGGAAAGCTCTCTCCCTTT 58.656 47.619 6.93 0.00 34.22 3.11
2132 2202 2.037385 AGTGGAAAGCTCTCTCCCTT 57.963 50.000 6.93 0.00 0.00 3.95
2133 2203 2.037385 AAGTGGAAAGCTCTCTCCCT 57.963 50.000 6.93 2.29 0.00 4.20
2134 2204 2.169561 CCTAAGTGGAAAGCTCTCTCCC 59.830 54.545 6.93 0.00 38.35 4.30
2135 2205 2.419436 GCCTAAGTGGAAAGCTCTCTCC 60.419 54.545 0.00 0.00 38.35 3.71
2136 2206 2.499693 AGCCTAAGTGGAAAGCTCTCTC 59.500 50.000 0.00 0.00 38.35 3.20
2137 2207 2.545810 AGCCTAAGTGGAAAGCTCTCT 58.454 47.619 0.00 0.00 38.35 3.10
2138 2208 3.006247 CAAGCCTAAGTGGAAAGCTCTC 58.994 50.000 0.00 0.00 38.35 3.20
2139 2209 2.373502 ACAAGCCTAAGTGGAAAGCTCT 59.626 45.455 0.00 0.00 38.35 4.09
2140 2210 2.784347 ACAAGCCTAAGTGGAAAGCTC 58.216 47.619 0.00 0.00 38.35 4.09
2141 2211 2.959465 ACAAGCCTAAGTGGAAAGCT 57.041 45.000 0.00 0.00 38.35 3.74
2142 2212 3.570125 AGAAACAAGCCTAAGTGGAAAGC 59.430 43.478 0.00 0.00 38.35 3.51
2143 2213 7.454260 AATAGAAACAAGCCTAAGTGGAAAG 57.546 36.000 0.00 0.00 38.35 2.62
2144 2214 8.380099 TCTAATAGAAACAAGCCTAAGTGGAAA 58.620 33.333 0.00 0.00 38.35 3.13
2145 2215 7.913789 TCTAATAGAAACAAGCCTAAGTGGAA 58.086 34.615 0.00 0.00 38.35 3.53
2146 2216 7.490657 TCTAATAGAAACAAGCCTAAGTGGA 57.509 36.000 0.00 0.00 38.35 4.02
2147 2217 8.738645 ATTCTAATAGAAACAAGCCTAAGTGG 57.261 34.615 6.82 0.00 37.82 4.00
2192 2262 4.911514 ACGCTGATGTTAGTTGGTTTTT 57.088 36.364 0.00 0.00 0.00 1.94
2193 2263 4.817464 TGTACGCTGATGTTAGTTGGTTTT 59.183 37.500 0.00 0.00 0.00 2.43
2194 2264 4.382291 TGTACGCTGATGTTAGTTGGTTT 58.618 39.130 0.00 0.00 0.00 3.27
2195 2265 3.997762 TGTACGCTGATGTTAGTTGGTT 58.002 40.909 0.00 0.00 0.00 3.67
2196 2266 3.671008 TGTACGCTGATGTTAGTTGGT 57.329 42.857 0.00 0.00 0.00 3.67
2197 2267 3.309682 CCATGTACGCTGATGTTAGTTGG 59.690 47.826 0.00 0.00 0.00 3.77
2198 2268 3.242413 GCCATGTACGCTGATGTTAGTTG 60.242 47.826 0.00 0.00 0.00 3.16
2199 2269 2.936498 GCCATGTACGCTGATGTTAGTT 59.064 45.455 0.00 0.00 0.00 2.24
2200 2270 2.093711 TGCCATGTACGCTGATGTTAGT 60.094 45.455 0.00 0.00 0.00 2.24
2201 2271 2.541346 CTGCCATGTACGCTGATGTTAG 59.459 50.000 0.00 0.00 0.00 2.34
2202 2272 2.093711 ACTGCCATGTACGCTGATGTTA 60.094 45.455 6.37 0.00 0.00 2.41
2203 2273 1.339055 ACTGCCATGTACGCTGATGTT 60.339 47.619 6.37 0.00 0.00 2.71
2204 2274 0.250234 ACTGCCATGTACGCTGATGT 59.750 50.000 6.37 0.00 0.00 3.06
2205 2275 0.933097 GACTGCCATGTACGCTGATG 59.067 55.000 6.37 0.00 0.00 3.07
2206 2276 0.536724 TGACTGCCATGTACGCTGAT 59.463 50.000 6.37 0.00 0.00 2.90
2207 2277 0.320050 TTGACTGCCATGTACGCTGA 59.680 50.000 6.37 0.00 0.00 4.26
2208 2278 1.155889 TTTGACTGCCATGTACGCTG 58.844 50.000 0.00 0.00 0.00 5.18
2209 2279 1.890876 TTTTGACTGCCATGTACGCT 58.109 45.000 0.00 0.00 0.00 5.07
2210 2280 2.697431 TTTTTGACTGCCATGTACGC 57.303 45.000 0.00 0.00 0.00 4.42
2240 2310 0.589223 TTGTCCGTTGCCGATTCAAC 59.411 50.000 5.47 5.47 42.04 3.18
2241 2311 0.871722 CTTGTCCGTTGCCGATTCAA 59.128 50.000 0.00 0.00 35.63 2.69
2242 2312 0.953471 CCTTGTCCGTTGCCGATTCA 60.953 55.000 0.00 0.00 35.63 2.57
2243 2313 1.794222 CCTTGTCCGTTGCCGATTC 59.206 57.895 0.00 0.00 35.63 2.52
2244 2314 2.332654 GCCTTGTCCGTTGCCGATT 61.333 57.895 0.00 0.00 35.63 3.34
2245 2315 2.746277 GCCTTGTCCGTTGCCGAT 60.746 61.111 0.00 0.00 35.63 4.18
2246 2316 2.951475 AAAGCCTTGTCCGTTGCCGA 62.951 55.000 0.00 0.00 35.63 5.54
2247 2317 2.070654 AAAAGCCTTGTCCGTTGCCG 62.071 55.000 0.00 0.00 0.00 5.69
2248 2318 0.597377 CAAAAGCCTTGTCCGTTGCC 60.597 55.000 0.00 0.00 0.00 4.52
2249 2319 1.215014 GCAAAAGCCTTGTCCGTTGC 61.215 55.000 0.00 0.00 35.13 4.17
2250 2320 0.102120 TGCAAAAGCCTTGTCCGTTG 59.898 50.000 0.00 0.00 0.00 4.10
2251 2321 0.820871 TTGCAAAAGCCTTGTCCGTT 59.179 45.000 0.00 0.00 0.00 4.44
2252 2322 1.039856 ATTGCAAAAGCCTTGTCCGT 58.960 45.000 1.71 0.00 0.00 4.69
2253 2323 1.269726 ACATTGCAAAAGCCTTGTCCG 60.270 47.619 1.71 0.00 0.00 4.79
2254 2324 2.137523 CACATTGCAAAAGCCTTGTCC 58.862 47.619 1.71 0.00 0.00 4.02
2255 2325 2.540931 CACACATTGCAAAAGCCTTGTC 59.459 45.455 1.71 0.00 0.00 3.18
2256 2326 2.553086 CACACATTGCAAAAGCCTTGT 58.447 42.857 1.71 0.00 0.00 3.16
2257 2327 1.868498 CCACACATTGCAAAAGCCTTG 59.132 47.619 1.71 0.00 0.00 3.61
2258 2328 1.202675 CCCACACATTGCAAAAGCCTT 60.203 47.619 1.71 0.00 0.00 4.35
2259 2329 0.393820 CCCACACATTGCAAAAGCCT 59.606 50.000 1.71 0.00 0.00 4.58
2260 2330 0.603439 CCCCACACATTGCAAAAGCC 60.603 55.000 1.71 0.00 0.00 4.35
2261 2331 0.106521 ACCCCACACATTGCAAAAGC 59.893 50.000 1.71 0.00 0.00 3.51
2262 2332 3.181471 TGTTACCCCACACATTGCAAAAG 60.181 43.478 1.71 1.36 0.00 2.27
2263 2333 2.766263 TGTTACCCCACACATTGCAAAA 59.234 40.909 1.71 0.00 0.00 2.44
2264 2334 2.388735 TGTTACCCCACACATTGCAAA 58.611 42.857 1.71 0.00 0.00 3.68
2265 2335 2.073252 TGTTACCCCACACATTGCAA 57.927 45.000 0.00 0.00 0.00 4.08
2266 2336 2.300956 ATGTTACCCCACACATTGCA 57.699 45.000 0.00 0.00 28.73 4.08
2267 2337 3.676291 AAATGTTACCCCACACATTGC 57.324 42.857 0.00 0.00 41.74 3.56
2268 2338 4.754114 CCAAAAATGTTACCCCACACATTG 59.246 41.667 0.00 0.00 41.74 2.82
2269 2339 4.410555 ACCAAAAATGTTACCCCACACATT 59.589 37.500 0.00 0.00 43.94 2.71
2270 2340 3.970640 ACCAAAAATGTTACCCCACACAT 59.029 39.130 0.00 0.00 35.00 3.21
2271 2341 3.375699 ACCAAAAATGTTACCCCACACA 58.624 40.909 0.00 0.00 0.00 3.72
2272 2342 4.123506 CAACCAAAAATGTTACCCCACAC 58.876 43.478 0.00 0.00 0.00 3.82
2273 2343 4.030913 TCAACCAAAAATGTTACCCCACA 58.969 39.130 0.00 0.00 0.00 4.17
2274 2344 4.674281 TCAACCAAAAATGTTACCCCAC 57.326 40.909 0.00 0.00 0.00 4.61
2275 2345 5.604650 AGATTCAACCAAAAATGTTACCCCA 59.395 36.000 0.00 0.00 0.00 4.96
2276 2346 6.109156 AGATTCAACCAAAAATGTTACCCC 57.891 37.500 0.00 0.00 0.00 4.95
2277 2347 7.892609 AGTAGATTCAACCAAAAATGTTACCC 58.107 34.615 0.00 0.00 0.00 3.69
2278 2348 7.749126 CGAGTAGATTCAACCAAAAATGTTACC 59.251 37.037 0.00 0.00 0.00 2.85
2279 2349 7.270579 GCGAGTAGATTCAACCAAAAATGTTAC 59.729 37.037 0.00 0.00 0.00 2.50
2280 2350 7.041030 TGCGAGTAGATTCAACCAAAAATGTTA 60.041 33.333 0.00 0.00 0.00 2.41
2281 2351 6.149633 GCGAGTAGATTCAACCAAAAATGTT 58.850 36.000 0.00 0.00 0.00 2.71
2282 2352 5.240623 TGCGAGTAGATTCAACCAAAAATGT 59.759 36.000 0.00 0.00 0.00 2.71
2283 2353 5.698832 TGCGAGTAGATTCAACCAAAAATG 58.301 37.500 0.00 0.00 0.00 2.32
2284 2354 5.957842 TGCGAGTAGATTCAACCAAAAAT 57.042 34.783 0.00 0.00 0.00 1.82
2285 2355 5.529430 TCTTGCGAGTAGATTCAACCAAAAA 59.471 36.000 0.00 0.00 0.00 1.94
2286 2356 5.060506 TCTTGCGAGTAGATTCAACCAAAA 58.939 37.500 0.00 0.00 0.00 2.44
2287 2357 4.637276 TCTTGCGAGTAGATTCAACCAAA 58.363 39.130 0.00 0.00 0.00 3.28
2288 2358 4.265904 TCTTGCGAGTAGATTCAACCAA 57.734 40.909 0.00 0.00 0.00 3.67
2289 2359 3.953712 TCTTGCGAGTAGATTCAACCA 57.046 42.857 0.00 0.00 0.00 3.67
2290 2360 5.593010 AGTATCTTGCGAGTAGATTCAACC 58.407 41.667 0.00 0.00 34.35 3.77
2291 2361 7.701078 TGTTAGTATCTTGCGAGTAGATTCAAC 59.299 37.037 0.00 0.00 34.35 3.18
2292 2362 7.768240 TGTTAGTATCTTGCGAGTAGATTCAA 58.232 34.615 0.00 0.00 34.35 2.69
2293 2363 7.329588 TGTTAGTATCTTGCGAGTAGATTCA 57.670 36.000 0.00 0.00 34.35 2.57
2294 2364 8.804688 AATGTTAGTATCTTGCGAGTAGATTC 57.195 34.615 0.00 0.00 34.35 2.52
2295 2365 9.601217 AAAATGTTAGTATCTTGCGAGTAGATT 57.399 29.630 0.00 0.00 34.35 2.40
2296 2366 9.250624 GAAAATGTTAGTATCTTGCGAGTAGAT 57.749 33.333 0.00 0.00 36.39 1.98
2297 2367 7.705325 GGAAAATGTTAGTATCTTGCGAGTAGA 59.295 37.037 0.00 0.00 0.00 2.59
2298 2368 7.707035 AGGAAAATGTTAGTATCTTGCGAGTAG 59.293 37.037 0.00 0.00 0.00 2.57
2299 2369 7.553334 AGGAAAATGTTAGTATCTTGCGAGTA 58.447 34.615 0.00 0.00 0.00 2.59
2300 2370 6.407202 AGGAAAATGTTAGTATCTTGCGAGT 58.593 36.000 0.00 0.00 0.00 4.18
2301 2371 6.910536 AGGAAAATGTTAGTATCTTGCGAG 57.089 37.500 0.00 0.00 0.00 5.03
2302 2372 7.389330 TGAAAGGAAAATGTTAGTATCTTGCGA 59.611 33.333 0.00 0.00 0.00 5.10
2303 2373 7.481798 GTGAAAGGAAAATGTTAGTATCTTGCG 59.518 37.037 0.00 0.00 0.00 4.85
2304 2374 7.755373 GGTGAAAGGAAAATGTTAGTATCTTGC 59.245 37.037 0.00 0.00 0.00 4.01
2305 2375 8.244113 GGGTGAAAGGAAAATGTTAGTATCTTG 58.756 37.037 0.00 0.00 0.00 3.02
2306 2376 7.120726 CGGGTGAAAGGAAAATGTTAGTATCTT 59.879 37.037 0.00 0.00 0.00 2.40
2307 2377 6.598064 CGGGTGAAAGGAAAATGTTAGTATCT 59.402 38.462 0.00 0.00 0.00 1.98
2308 2378 6.677187 GCGGGTGAAAGGAAAATGTTAGTATC 60.677 42.308 0.00 0.00 0.00 2.24
2309 2379 5.124936 GCGGGTGAAAGGAAAATGTTAGTAT 59.875 40.000 0.00 0.00 0.00 2.12
2310 2380 4.456566 GCGGGTGAAAGGAAAATGTTAGTA 59.543 41.667 0.00 0.00 0.00 1.82
2311 2381 3.254903 GCGGGTGAAAGGAAAATGTTAGT 59.745 43.478 0.00 0.00 0.00 2.24
2312 2382 3.254657 TGCGGGTGAAAGGAAAATGTTAG 59.745 43.478 0.00 0.00 0.00 2.34
2313 2383 3.223435 TGCGGGTGAAAGGAAAATGTTA 58.777 40.909 0.00 0.00 0.00 2.41
2314 2384 2.035632 TGCGGGTGAAAGGAAAATGTT 58.964 42.857 0.00 0.00 0.00 2.71
2315 2385 1.698506 TGCGGGTGAAAGGAAAATGT 58.301 45.000 0.00 0.00 0.00 2.71
2316 2386 2.810439 TTGCGGGTGAAAGGAAAATG 57.190 45.000 0.00 0.00 0.00 2.32
2317 2387 3.828875 TTTTGCGGGTGAAAGGAAAAT 57.171 38.095 0.00 0.00 33.81 1.82
2318 2388 3.195825 TCTTTTTGCGGGTGAAAGGAAAA 59.804 39.130 0.00 0.00 36.23 2.29
2319 2389 2.761208 TCTTTTTGCGGGTGAAAGGAAA 59.239 40.909 0.00 0.00 32.62 3.13
2320 2390 2.379972 TCTTTTTGCGGGTGAAAGGAA 58.620 42.857 0.00 0.00 32.62 3.36
2321 2391 2.060050 TCTTTTTGCGGGTGAAAGGA 57.940 45.000 0.00 0.00 32.62 3.36
2322 2392 2.880963 TTCTTTTTGCGGGTGAAAGG 57.119 45.000 0.00 0.00 32.62 3.11
2341 2411 8.870116 AGCCAAAGGAAATGTTAGTATCTTTTT 58.130 29.630 0.00 0.00 0.00 1.94
2342 2412 8.422577 AGCCAAAGGAAATGTTAGTATCTTTT 57.577 30.769 0.00 0.00 0.00 2.27
2343 2413 7.669722 TGAGCCAAAGGAAATGTTAGTATCTTT 59.330 33.333 0.00 0.00 0.00 2.52
2344 2414 7.121315 GTGAGCCAAAGGAAATGTTAGTATCTT 59.879 37.037 0.00 0.00 0.00 2.40
2345 2415 6.599638 GTGAGCCAAAGGAAATGTTAGTATCT 59.400 38.462 0.00 0.00 0.00 1.98
2346 2416 6.599638 AGTGAGCCAAAGGAAATGTTAGTATC 59.400 38.462 0.00 0.00 0.00 2.24
2347 2417 6.375455 CAGTGAGCCAAAGGAAATGTTAGTAT 59.625 38.462 0.00 0.00 0.00 2.12
2348 2418 5.705441 CAGTGAGCCAAAGGAAATGTTAGTA 59.295 40.000 0.00 0.00 0.00 1.82
2349 2419 4.520492 CAGTGAGCCAAAGGAAATGTTAGT 59.480 41.667 0.00 0.00 0.00 2.24
2350 2420 4.520492 ACAGTGAGCCAAAGGAAATGTTAG 59.480 41.667 0.00 0.00 0.00 2.34
2351 2421 4.278170 CACAGTGAGCCAAAGGAAATGTTA 59.722 41.667 0.00 0.00 0.00 2.41
2352 2422 3.068590 CACAGTGAGCCAAAGGAAATGTT 59.931 43.478 0.00 0.00 0.00 2.71
2353 2423 2.624838 CACAGTGAGCCAAAGGAAATGT 59.375 45.455 0.00 0.00 0.00 2.71
2354 2424 2.886523 TCACAGTGAGCCAAAGGAAATG 59.113 45.455 0.00 0.00 0.00 2.32
2355 2425 3.228188 TCACAGTGAGCCAAAGGAAAT 57.772 42.857 0.00 0.00 0.00 2.17
2356 2426 2.727123 TCACAGTGAGCCAAAGGAAA 57.273 45.000 0.00 0.00 0.00 3.13
2357 2427 2.106338 TGATCACAGTGAGCCAAAGGAA 59.894 45.455 16.19 0.00 30.48 3.36
2358 2428 1.699083 TGATCACAGTGAGCCAAAGGA 59.301 47.619 16.19 0.00 30.48 3.36
2359 2429 1.808945 GTGATCACAGTGAGCCAAAGG 59.191 52.381 21.07 0.00 30.48 3.11
2360 2430 2.775890 AGTGATCACAGTGAGCCAAAG 58.224 47.619 27.02 0.00 30.48 2.77
2361 2431 2.936919 AGTGATCACAGTGAGCCAAA 57.063 45.000 27.02 0.00 30.48 3.28
2362 2432 4.350368 TTTAGTGATCACAGTGAGCCAA 57.650 40.909 27.02 5.09 30.48 4.52
2363 2433 4.558226 ATTTAGTGATCACAGTGAGCCA 57.442 40.909 27.02 9.96 30.48 4.75
2364 2434 5.886960 AAATTTAGTGATCACAGTGAGCC 57.113 39.130 27.02 7.65 30.48 4.70
2365 2435 8.721478 TCTTAAAATTTAGTGATCACAGTGAGC 58.279 33.333 27.02 12.12 32.56 4.26
2436 2747 7.554959 AAACCTTCTCTGGTATTCTCTGTAA 57.445 36.000 0.00 0.00 39.83 2.41
2503 2834 9.750125 GAAAACCAAAGACAAATCTGACTAATT 57.250 29.630 0.00 0.00 34.48 1.40
2507 2838 6.773976 TGAAAACCAAAGACAAATCTGACT 57.226 33.333 0.00 0.00 34.48 3.41
2511 2842 5.129320 AGCCTTGAAAACCAAAGACAAATCT 59.871 36.000 0.00 0.00 36.42 2.40
2518 2849 5.420739 ACAAAGTAGCCTTGAAAACCAAAGA 59.579 36.000 0.00 0.00 33.76 2.52
2525 2856 4.873259 GGCAAAACAAAGTAGCCTTGAAAA 59.127 37.500 0.00 0.00 42.01 2.29
2533 2864 2.884639 TCAGGAGGCAAAACAAAGTAGC 59.115 45.455 0.00 0.00 0.00 3.58
2534 2865 5.514274 TTTCAGGAGGCAAAACAAAGTAG 57.486 39.130 0.00 0.00 0.00 2.57
2558 2889 2.536928 CCAAAAGCTAATAGCACGTCGC 60.537 50.000 15.28 2.28 45.56 5.19
2562 2893 1.396996 ACGCCAAAAGCTAATAGCACG 59.603 47.619 15.28 9.95 45.56 5.34
2586 2918 5.291128 GTCGACAACCAGACGAAATTGATAT 59.709 40.000 11.55 0.00 45.20 1.63
2616 2948 4.191804 TCAAGGAAATTTTGGACCAGGA 57.808 40.909 0.00 0.00 0.00 3.86
2618 2950 7.232118 AGTTATCAAGGAAATTTTGGACCAG 57.768 36.000 0.00 0.00 0.00 4.00
2630 2962 7.451731 AACCCATCTGATAGTTATCAAGGAA 57.548 36.000 12.73 0.00 41.72 3.36
2663 3009 3.662759 TTTGGAAGGGTCTGAAGTGTT 57.337 42.857 0.00 0.00 0.00 3.32
2697 3044 8.301002 GCTTCGGACAGAGATAGTCTATTTTAT 58.699 37.037 0.00 0.00 36.29 1.40
2715 3062 0.531974 TGTGTGACTTGGCTTCGGAC 60.532 55.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.