Multiple sequence alignment - TraesCS1B01G193600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G193600 chr1B 100.000 5060 0 0 1 5060 348499984 348505043 0.000000e+00 9345
1 TraesCS1B01G193600 chr1B 86.842 494 44 6 4558 5035 176314837 176314349 2.680000e-147 532
2 TraesCS1B01G193600 chr1A 89.870 4215 246 80 284 4414 336606983 336611100 0.000000e+00 5251
3 TraesCS1B01G193600 chr1D 92.807 2850 114 34 543 3354 262525521 262528317 0.000000e+00 4043
4 TraesCS1B01G193600 chr1D 87.956 1453 96 49 3156 4553 262528317 262529745 0.000000e+00 1640
5 TraesCS1B01G193600 chr1D 89.579 451 33 7 4598 5035 377337612 377337163 1.230000e-155 560
6 TraesCS1B01G193600 chr1D 77.756 508 68 27 4555 5034 14353027 14352537 2.320000e-68 270
7 TraesCS1B01G193600 chr5D 90.737 475 32 9 4598 5060 322657735 322657261 1.550000e-174 623
8 TraesCS1B01G193600 chr5D 84.462 502 50 11 4551 5033 462545227 462544735 2.130000e-128 470
9 TraesCS1B01G193600 chr5D 78.854 506 59 28 4558 5033 175419322 175419809 1.070000e-76 298
10 TraesCS1B01G193600 chr5B 89.474 475 37 7 4598 5059 374202337 374201863 5.640000e-164 588
11 TraesCS1B01G193600 chr3B 88.000 500 36 12 4558 5033 667217750 667217251 2.040000e-158 569
12 TraesCS1B01G193600 chr3D 88.000 500 35 8 4558 5033 92920292 92919794 7.350000e-158 568
13 TraesCS1B01G193600 chr7D 89.062 448 35 9 4598 5033 310742581 310743026 1.240000e-150 544
14 TraesCS1B01G193600 chr7D 81.901 547 52 32 4558 5060 199923198 199922655 7.840000e-113 418
15 TraesCS1B01G193600 chr7D 78.672 497 77 17 4551 5033 351290822 351291303 2.290000e-78 303
16 TraesCS1B01G193600 chr2A 88.692 451 34 4 4598 5036 318785362 318784917 7.460000e-148 534
17 TraesCS1B01G193600 chr2A 87.379 206 15 6 4866 5060 463155727 463155522 5.100000e-55 226
18 TraesCS1B01G193600 chr5A 86.830 448 43 3 4598 5033 142660985 142661428 2.120000e-133 486
19 TraesCS1B01G193600 chr5A 78.723 517 63 23 4558 5045 175056474 175055976 8.230000e-78 302
20 TraesCS1B01G193600 chr4D 82.759 551 46 21 4558 5060 202386727 202386178 3.590000e-121 446
21 TraesCS1B01G193600 chr4D 82.533 458 53 16 4598 5033 441084174 441083722 1.330000e-100 377
22 TraesCS1B01G193600 chr2D 82.530 498 48 22 4597 5060 259103220 259102728 7.890000e-108 401
23 TraesCS1B01G193600 chr2D 78.799 533 66 27 4558 5060 137350444 137349929 1.060000e-81 315
24 TraesCS1B01G193600 chr2D 81.772 395 37 21 4698 5060 328383011 328382620 1.070000e-76 298
25 TraesCS1B01G193600 chr6B 82.056 496 52 20 4598 5060 345367343 345366852 6.140000e-104 388
26 TraesCS1B01G193600 chr4A 78.236 533 68 29 4558 5060 569337241 569336727 1.070000e-76 298
27 TraesCS1B01G193600 chr4A 82.979 329 51 5 1705 2031 690531638 690531313 4.960000e-75 292
28 TraesCS1B01G193600 chr2B 77.365 539 75 26 4551 5060 750084330 750083810 4.990000e-70 276


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G193600 chr1B 348499984 348505043 5059 False 9345.0 9345 100.0000 1 5060 1 chr1B.!!$F1 5059
1 TraesCS1B01G193600 chr1A 336606983 336611100 4117 False 5251.0 5251 89.8700 284 4414 1 chr1A.!!$F1 4130
2 TraesCS1B01G193600 chr1D 262525521 262529745 4224 False 2841.5 4043 90.3815 543 4553 2 chr1D.!!$F1 4010
3 TraesCS1B01G193600 chr7D 199922655 199923198 543 True 418.0 418 81.9010 4558 5060 1 chr7D.!!$R1 502
4 TraesCS1B01G193600 chr4D 202386178 202386727 549 True 446.0 446 82.7590 4558 5060 1 chr4D.!!$R1 502
5 TraesCS1B01G193600 chr2D 137349929 137350444 515 True 315.0 315 78.7990 4558 5060 1 chr2D.!!$R1 502
6 TraesCS1B01G193600 chr4A 569336727 569337241 514 True 298.0 298 78.2360 4558 5060 1 chr4A.!!$R1 502
7 TraesCS1B01G193600 chr2B 750083810 750084330 520 True 276.0 276 77.3650 4551 5060 1 chr2B.!!$R1 509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
275 276 0.108138 ACAATGCCACCTACTCTCGC 60.108 55.0 0.0 0.0 0.00 5.03 F
886 903 0.456221 TGCTCGCTTACTGCTCCTAC 59.544 55.0 0.0 0.0 40.11 3.18 F
914 931 0.465824 TTTTACCACCACCACCACCG 60.466 55.0 0.0 0.0 0.00 4.94 F
2501 2556 0.727398 GTGCGAGTGGGAGCATTTAC 59.273 55.0 0.0 0.0 45.69 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2071 2111 0.250513 AAGCCAAGAGGTTAGAGCGG 59.749 55.0 0.00 0.00 37.19 5.52 R
2339 2384 0.876342 GAGCTAATTCTCACCGCCCG 60.876 60.0 0.00 0.00 33.41 6.13 R
2633 2702 1.073216 GGTCTCGCATGTCGTCACAG 61.073 60.0 8.91 1.07 35.41 3.66 R
4398 4714 0.249280 CGTGTGTGGACAGCTGTGTA 60.249 55.0 27.27 10.05 36.88 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
134 135 5.543507 TTTTTCCTGTATGGTTGCACATT 57.456 34.783 0.00 0.00 37.07 2.71
135 136 4.517952 TTTCCTGTATGGTTGCACATTG 57.482 40.909 0.00 0.00 37.07 2.82
136 137 3.431673 TCCTGTATGGTTGCACATTGA 57.568 42.857 0.00 0.00 37.07 2.57
137 138 3.346315 TCCTGTATGGTTGCACATTGAG 58.654 45.455 0.00 0.00 37.07 3.02
138 139 3.084039 CCTGTATGGTTGCACATTGAGT 58.916 45.455 0.00 0.00 32.39 3.41
139 140 5.341707 TCCTGTATGGTTGCACATTGAGTG 61.342 45.833 0.00 0.00 43.25 3.51
159 160 2.561569 GGATCTTGTCCCATACGTTGG 58.438 52.381 0.00 0.98 46.00 3.77
160 161 2.093128 GGATCTTGTCCCATACGTTGGT 60.093 50.000 13.41 0.00 44.83 3.67
161 162 3.606687 GATCTTGTCCCATACGTTGGTT 58.393 45.455 13.41 0.00 44.83 3.67
162 163 2.773487 TCTTGTCCCATACGTTGGTTG 58.227 47.619 13.41 2.76 44.83 3.77
163 164 1.199097 CTTGTCCCATACGTTGGTTGC 59.801 52.381 13.41 6.05 44.83 4.17
164 165 0.108774 TGTCCCATACGTTGGTTGCA 59.891 50.000 13.41 7.89 44.83 4.08
165 166 1.271652 TGTCCCATACGTTGGTTGCAT 60.272 47.619 13.41 0.00 44.83 3.96
166 167 1.132262 GTCCCATACGTTGGTTGCATG 59.868 52.381 13.41 0.00 44.83 4.06
167 168 1.173043 CCCATACGTTGGTTGCATGT 58.827 50.000 13.41 0.00 44.83 3.21
168 169 1.543802 CCCATACGTTGGTTGCATGTT 59.456 47.619 13.41 0.00 44.83 2.71
169 170 2.750166 CCCATACGTTGGTTGCATGTTA 59.250 45.455 13.41 0.00 44.83 2.41
170 171 3.191581 CCCATACGTTGGTTGCATGTTAA 59.808 43.478 13.41 0.00 44.83 2.01
171 172 4.411327 CCATACGTTGGTTGCATGTTAAG 58.589 43.478 0.00 0.00 40.99 1.85
172 173 4.155099 CCATACGTTGGTTGCATGTTAAGA 59.845 41.667 0.00 0.00 40.99 2.10
173 174 5.163663 CCATACGTTGGTTGCATGTTAAGAT 60.164 40.000 0.00 0.00 40.99 2.40
174 175 4.159377 ACGTTGGTTGCATGTTAAGATG 57.841 40.909 8.21 8.21 0.00 2.90
175 176 3.568007 ACGTTGGTTGCATGTTAAGATGT 59.432 39.130 13.58 0.00 0.00 3.06
176 177 4.158384 CGTTGGTTGCATGTTAAGATGTC 58.842 43.478 13.58 7.14 0.00 3.06
177 178 4.320129 CGTTGGTTGCATGTTAAGATGTCA 60.320 41.667 13.58 9.37 0.00 3.58
178 179 5.619757 CGTTGGTTGCATGTTAAGATGTCAT 60.620 40.000 13.58 0.00 0.00 3.06
179 180 6.403092 CGTTGGTTGCATGTTAAGATGTCATA 60.403 38.462 13.58 2.68 0.00 2.15
180 181 6.682423 TGGTTGCATGTTAAGATGTCATAG 57.318 37.500 13.58 0.00 0.00 2.23
181 182 6.179756 TGGTTGCATGTTAAGATGTCATAGT 58.820 36.000 13.58 0.00 0.00 2.12
182 183 6.658816 TGGTTGCATGTTAAGATGTCATAGTT 59.341 34.615 13.58 0.00 0.00 2.24
183 184 6.968904 GGTTGCATGTTAAGATGTCATAGTTG 59.031 38.462 13.58 0.00 0.00 3.16
184 185 6.122850 TGCATGTTAAGATGTCATAGTTGC 57.877 37.500 13.58 0.00 0.00 4.17
185 186 5.647225 TGCATGTTAAGATGTCATAGTTGCA 59.353 36.000 13.58 1.55 0.00 4.08
186 187 6.319405 TGCATGTTAAGATGTCATAGTTGCAT 59.681 34.615 13.58 0.00 0.00 3.96
187 188 6.635641 GCATGTTAAGATGTCATAGTTGCATG 59.364 38.462 13.58 14.51 33.97 4.06
188 189 7.680350 GCATGTTAAGATGTCATAGTTGCATGT 60.680 37.037 13.58 0.00 33.55 3.21
189 190 7.686438 TGTTAAGATGTCATAGTTGCATGTT 57.314 32.000 0.00 0.00 32.17 2.71
190 191 7.529158 TGTTAAGATGTCATAGTTGCATGTTG 58.471 34.615 0.00 0.00 30.95 3.33
191 192 7.390162 TGTTAAGATGTCATAGTTGCATGTTGA 59.610 33.333 0.00 0.00 30.95 3.18
192 193 6.432607 AAGATGTCATAGTTGCATGTTGAG 57.567 37.500 0.00 0.00 28.86 3.02
193 194 5.737860 AGATGTCATAGTTGCATGTTGAGA 58.262 37.500 0.00 0.00 0.00 3.27
194 195 6.354938 AGATGTCATAGTTGCATGTTGAGAT 58.645 36.000 0.00 0.00 0.00 2.75
195 196 7.503549 AGATGTCATAGTTGCATGTTGAGATA 58.496 34.615 0.00 0.00 0.00 1.98
196 197 7.989170 AGATGTCATAGTTGCATGTTGAGATAA 59.011 33.333 0.00 0.00 0.00 1.75
197 198 7.920160 TGTCATAGTTGCATGTTGAGATAAA 57.080 32.000 0.00 0.00 0.00 1.40
198 199 8.334263 TGTCATAGTTGCATGTTGAGATAAAA 57.666 30.769 0.00 0.00 0.00 1.52
199 200 8.791675 TGTCATAGTTGCATGTTGAGATAAAAA 58.208 29.630 0.00 0.00 0.00 1.94
222 223 6.676237 AAAAATTGAAACAAGGCAAACGAT 57.324 29.167 0.00 0.00 0.00 3.73
223 224 6.676237 AAAATTGAAACAAGGCAAACGATT 57.324 29.167 0.00 0.00 0.00 3.34
224 225 6.676237 AAATTGAAACAAGGCAAACGATTT 57.324 29.167 0.00 0.00 0.00 2.17
225 226 7.778470 AAATTGAAACAAGGCAAACGATTTA 57.222 28.000 0.00 0.00 0.00 1.40
226 227 6.763303 ATTGAAACAAGGCAAACGATTTAC 57.237 33.333 0.00 0.00 0.00 2.01
227 228 4.612943 TGAAACAAGGCAAACGATTTACC 58.387 39.130 0.00 0.00 0.00 2.85
228 229 4.098044 TGAAACAAGGCAAACGATTTACCA 59.902 37.500 0.00 0.00 0.00 3.25
229 230 4.864704 AACAAGGCAAACGATTTACCAT 57.135 36.364 0.00 0.00 0.00 3.55
230 231 4.864704 ACAAGGCAAACGATTTACCATT 57.135 36.364 0.00 0.00 0.00 3.16
231 232 5.208463 ACAAGGCAAACGATTTACCATTT 57.792 34.783 0.00 0.00 0.00 2.32
232 233 5.606505 ACAAGGCAAACGATTTACCATTTT 58.393 33.333 0.00 0.00 0.00 1.82
233 234 6.750148 ACAAGGCAAACGATTTACCATTTTA 58.250 32.000 0.00 0.00 0.00 1.52
234 235 7.382898 ACAAGGCAAACGATTTACCATTTTAT 58.617 30.769 0.00 0.00 0.00 1.40
235 236 7.875554 ACAAGGCAAACGATTTACCATTTTATT 59.124 29.630 0.00 0.00 0.00 1.40
236 237 7.826260 AGGCAAACGATTTACCATTTTATTG 57.174 32.000 0.00 0.00 0.00 1.90
237 238 7.607250 AGGCAAACGATTTACCATTTTATTGA 58.393 30.769 0.00 0.00 0.00 2.57
238 239 8.257306 AGGCAAACGATTTACCATTTTATTGAT 58.743 29.630 0.00 0.00 0.00 2.57
239 240 8.878769 GGCAAACGATTTACCATTTTATTGATT 58.121 29.630 0.00 0.00 0.00 2.57
262 263 9.508567 GATTAAGGAAGAATGTTTAGACAATGC 57.491 33.333 0.00 0.00 39.66 3.56
263 264 5.904362 AGGAAGAATGTTTAGACAATGCC 57.096 39.130 0.00 0.00 39.66 4.40
264 265 5.324409 AGGAAGAATGTTTAGACAATGCCA 58.676 37.500 0.00 0.00 39.66 4.92
265 266 5.183904 AGGAAGAATGTTTAGACAATGCCAC 59.816 40.000 0.00 0.00 39.66 5.01
266 267 5.391312 AAGAATGTTTAGACAATGCCACC 57.609 39.130 0.00 0.00 39.66 4.61
267 268 4.666512 AGAATGTTTAGACAATGCCACCT 58.333 39.130 0.00 0.00 39.66 4.00
268 269 5.815581 AGAATGTTTAGACAATGCCACCTA 58.184 37.500 0.00 0.00 39.66 3.08
269 270 5.648092 AGAATGTTTAGACAATGCCACCTAC 59.352 40.000 0.00 0.00 39.66 3.18
270 271 4.634012 TGTTTAGACAATGCCACCTACT 57.366 40.909 0.00 0.00 31.49 2.57
271 272 4.575885 TGTTTAGACAATGCCACCTACTC 58.424 43.478 0.00 0.00 31.49 2.59
272 273 4.286032 TGTTTAGACAATGCCACCTACTCT 59.714 41.667 0.00 0.00 31.49 3.24
273 274 4.737855 TTAGACAATGCCACCTACTCTC 57.262 45.455 0.00 0.00 0.00 3.20
274 275 1.478510 AGACAATGCCACCTACTCTCG 59.521 52.381 0.00 0.00 0.00 4.04
275 276 0.108138 ACAATGCCACCTACTCTCGC 60.108 55.000 0.00 0.00 0.00 5.03
276 277 1.141881 AATGCCACCTACTCTCGCG 59.858 57.895 0.00 0.00 0.00 5.87
277 278 2.907897 AATGCCACCTACTCTCGCGC 62.908 60.000 0.00 0.00 0.00 6.86
278 279 4.874977 GCCACCTACTCTCGCGCC 62.875 72.222 0.00 0.00 0.00 6.53
279 280 3.449227 CCACCTACTCTCGCGCCA 61.449 66.667 0.00 0.00 0.00 5.69
280 281 2.786495 CCACCTACTCTCGCGCCAT 61.786 63.158 0.00 0.00 0.00 4.40
281 282 1.141881 CACCTACTCTCGCGCCATT 59.858 57.895 0.00 0.00 0.00 3.16
282 283 0.460284 CACCTACTCTCGCGCCATTT 60.460 55.000 0.00 0.00 0.00 2.32
315 316 2.225491 GCGTCCTGATTTGCAGTGTAAA 59.775 45.455 8.90 8.90 43.33 2.01
316 317 3.810373 CGTCCTGATTTGCAGTGTAAAC 58.190 45.455 8.65 4.32 43.33 2.01
318 319 4.024048 CGTCCTGATTTGCAGTGTAAACTT 60.024 41.667 8.65 0.00 43.33 2.66
320 321 6.273071 GTCCTGATTTGCAGTGTAAACTTTT 58.727 36.000 8.65 0.00 43.33 2.27
321 322 7.422399 GTCCTGATTTGCAGTGTAAACTTTTA 58.578 34.615 8.65 0.00 43.33 1.52
338 339 5.130350 ACTTTTAGGCTTGTAGCAGTGAAA 58.870 37.500 0.00 0.00 44.75 2.69
362 363 2.831597 GGTACGTGCAGTTGGGTAC 58.168 57.895 5.86 0.00 35.63 3.34
365 366 3.773630 CGTGCAGTTGGGTACGCG 61.774 66.667 3.53 3.53 39.82 6.01
366 367 3.419759 GTGCAGTTGGGTACGCGG 61.420 66.667 12.47 0.00 0.00 6.46
367 368 4.690719 TGCAGTTGGGTACGCGGG 62.691 66.667 12.47 0.00 0.00 6.13
368 369 4.382320 GCAGTTGGGTACGCGGGA 62.382 66.667 12.47 0.00 0.00 5.14
375 378 1.259142 TGGGTACGCGGGATTCTTCA 61.259 55.000 12.47 0.00 0.00 3.02
449 452 3.119101 ACCTTTGTGACTATCGATCGCTT 60.119 43.478 11.09 2.72 0.00 4.68
512 515 2.159268 GGTAGAGCCGTAGAGGAACAAC 60.159 54.545 0.00 0.00 45.00 3.32
580 586 1.512926 ATTCTCACAACGACCAGTGC 58.487 50.000 0.00 0.00 35.76 4.40
581 587 0.464036 TTCTCACAACGACCAGTGCT 59.536 50.000 0.00 0.00 35.76 4.40
621 627 7.508296 AGTTTTCCCTACGGATACTGTACATAT 59.492 37.037 0.00 0.00 38.24 1.78
630 636 6.430308 ACGGATACTGTACATATGTGGAGTAG 59.570 42.308 22.90 16.22 31.21 2.57
631 637 6.430308 CGGATACTGTACATATGTGGAGTAGT 59.570 42.308 22.90 18.13 31.21 2.73
632 638 7.605309 CGGATACTGTACATATGTGGAGTAGTA 59.395 40.741 22.90 19.14 31.21 1.82
681 692 0.537143 AGTGCGGATGTCCTGCAAAA 60.537 50.000 16.20 0.00 43.27 2.44
886 903 0.456221 TGCTCGCTTACTGCTCCTAC 59.544 55.000 0.00 0.00 40.11 3.18
908 925 3.306472 AGAAAGCTTTTACCACCACCA 57.694 42.857 14.05 0.00 0.00 4.17
909 926 2.956333 AGAAAGCTTTTACCACCACCAC 59.044 45.455 14.05 0.00 0.00 4.16
910 927 1.699730 AAGCTTTTACCACCACCACC 58.300 50.000 0.00 0.00 0.00 4.61
911 928 0.553819 AGCTTTTACCACCACCACCA 59.446 50.000 0.00 0.00 0.00 4.17
912 929 0.671796 GCTTTTACCACCACCACCAC 59.328 55.000 0.00 0.00 0.00 4.16
913 930 1.324383 CTTTTACCACCACCACCACC 58.676 55.000 0.00 0.00 0.00 4.61
914 931 0.465824 TTTTACCACCACCACCACCG 60.466 55.000 0.00 0.00 0.00 4.94
915 932 2.962142 TTTACCACCACCACCACCGC 62.962 60.000 0.00 0.00 0.00 5.68
947 964 1.407979 CAATTGCCCATTGCTCTCTCC 59.592 52.381 0.00 0.00 42.00 3.71
948 965 0.924823 ATTGCCCATTGCTCTCTCCT 59.075 50.000 0.00 0.00 42.00 3.69
949 966 1.583556 TTGCCCATTGCTCTCTCCTA 58.416 50.000 0.00 0.00 42.00 2.94
950 967 1.126488 TGCCCATTGCTCTCTCCTAG 58.874 55.000 0.00 0.00 42.00 3.02
956 977 2.443958 TTGCTCTCTCCTAGCTGCTA 57.556 50.000 9.34 9.34 40.73 3.49
1533 1572 3.966026 CTTCGTCCACGTCGAGGGC 62.966 68.421 10.27 6.02 40.80 5.19
1911 1951 4.078516 AGCGGTACAAGGTCGGGC 62.079 66.667 0.00 0.00 0.00 6.13
1949 1989 3.496875 CTCGCTCGGCTCCATCCTG 62.497 68.421 0.00 0.00 0.00 3.86
2071 2111 1.793613 GTGACGTTTCTGCATGCGC 60.794 57.895 14.09 0.00 39.24 6.09
2368 2413 5.446473 GGTGAGAATTAGCTCAACGACATTG 60.446 44.000 0.00 0.00 45.69 2.82
2369 2414 5.120830 GTGAGAATTAGCTCAACGACATTGT 59.879 40.000 0.00 0.00 45.69 2.71
2379 2424 5.277538 GCTCAACGACATTGTTTCTTCTTCT 60.278 40.000 0.00 0.00 39.54 2.85
2501 2556 0.727398 GTGCGAGTGGGAGCATTTAC 59.273 55.000 0.00 0.00 45.69 2.01
2623 2692 3.081804 GACCCAGGTCAAATGTTAGTGG 58.918 50.000 12.05 0.00 44.02 4.00
2624 2693 2.445525 ACCCAGGTCAAATGTTAGTGGT 59.554 45.455 0.00 0.00 0.00 4.16
2625 2694 3.117284 ACCCAGGTCAAATGTTAGTGGTT 60.117 43.478 0.00 0.00 0.00 3.67
2626 2695 3.255642 CCCAGGTCAAATGTTAGTGGTTG 59.744 47.826 0.00 0.00 0.00 3.77
2627 2696 3.305335 CCAGGTCAAATGTTAGTGGTTGC 60.305 47.826 0.00 0.00 0.00 4.17
2628 2697 3.317711 CAGGTCAAATGTTAGTGGTTGCA 59.682 43.478 0.00 0.00 0.00 4.08
2633 2702 3.369546 AATGTTAGTGGTTGCACTTGC 57.630 42.857 0.00 0.00 42.50 4.01
2650 2719 1.444383 GCTGTGACGACATGCGAGA 60.444 57.895 14.88 0.35 44.57 4.04
2664 2733 2.959516 TGCGAGACCATCTACTGTTTG 58.040 47.619 0.00 0.00 0.00 2.93
2667 2736 3.368236 GCGAGACCATCTACTGTTTGAAC 59.632 47.826 0.00 0.00 0.00 3.18
2701 2770 1.539869 ATGGACCACCTGCAGACCT 60.540 57.895 17.39 0.00 37.04 3.85
2704 2773 1.754745 GACCACCTGCAGACCTGAA 59.245 57.895 17.39 0.00 0.00 3.02
2705 2774 0.603975 GACCACCTGCAGACCTGAAC 60.604 60.000 17.39 1.75 0.00 3.18
2711 2781 0.445436 CTGCAGACCTGAACGATTGC 59.555 55.000 8.42 0.00 0.00 3.56
2807 2877 6.566753 GCTTCAACCAACTCTAGTGACATTTC 60.567 42.308 0.00 0.00 0.00 2.17
2815 2885 4.187694 CTCTAGTGACATTTCTTCCTGCC 58.812 47.826 0.00 0.00 0.00 4.85
2816 2886 2.206576 AGTGACATTTCTTCCTGCCC 57.793 50.000 0.00 0.00 0.00 5.36
2817 2887 1.425066 AGTGACATTTCTTCCTGCCCA 59.575 47.619 0.00 0.00 0.00 5.36
2859 2929 0.864659 AACCAAAACCTTAGCCCCCT 59.135 50.000 0.00 0.00 0.00 4.79
2890 2960 7.602265 TCTTTTTGCCTAGCCAAATTTTGATAC 59.398 33.333 10.72 0.42 34.92 2.24
2919 2995 3.906720 TGGGCTCAAACTAGACATACC 57.093 47.619 0.00 0.00 0.00 2.73
2921 2997 3.197766 TGGGCTCAAACTAGACATACCTG 59.802 47.826 0.00 0.00 0.00 4.00
2922 2998 3.197983 GGGCTCAAACTAGACATACCTGT 59.802 47.826 0.00 0.00 38.67 4.00
2923 2999 4.404715 GGGCTCAAACTAGACATACCTGTA 59.595 45.833 0.00 0.00 35.14 2.74
2925 3001 5.044558 GCTCAAACTAGACATACCTGTAGC 58.955 45.833 0.00 0.00 35.14 3.58
2926 3002 5.244785 TCAAACTAGACATACCTGTAGCG 57.755 43.478 0.00 0.00 35.14 4.26
2927 3003 4.703575 TCAAACTAGACATACCTGTAGCGT 59.296 41.667 0.00 0.00 35.14 5.07
2929 3005 3.212685 ACTAGACATACCTGTAGCGTCC 58.787 50.000 0.00 0.00 35.14 4.79
2998 3074 1.289066 CCGCGTGAGACAAGGAAGA 59.711 57.895 4.92 0.00 0.00 2.87
3036 3112 3.428532 GTTGTCTAGAGGAGGTGGTGTA 58.571 50.000 0.00 0.00 0.00 2.90
3045 3121 4.141088 AGAGGAGGTGGTGTATCGGTAATA 60.141 45.833 0.00 0.00 0.00 0.98
3070 3146 5.796424 AACAAATTGAGCACTTTCTCCAT 57.204 34.783 0.00 0.00 32.22 3.41
3096 3175 4.221482 GGGAATATCAGGCATGGGATTTTC 59.779 45.833 0.00 0.00 33.48 2.29
3149 3230 9.931210 GTGTAATACTATGCCACAAAAAGATAC 57.069 33.333 0.00 0.00 0.00 2.24
3182 3263 6.035650 TGTTTCGCTAATTAGATTGAAGACCG 59.964 38.462 16.85 6.81 0.00 4.79
3226 3307 1.742768 CCGTCTGGAGGGAGTATGC 59.257 63.158 3.50 0.00 38.58 3.14
3227 3308 0.757188 CCGTCTGGAGGGAGTATGCT 60.757 60.000 3.50 0.00 38.58 3.79
3228 3309 0.671251 CGTCTGGAGGGAGTATGCTC 59.329 60.000 1.56 1.56 40.93 4.26
3230 3311 2.111384 GTCTGGAGGGAGTATGCTCAA 58.889 52.381 13.14 0.00 43.37 3.02
3231 3312 2.703007 GTCTGGAGGGAGTATGCTCAAT 59.297 50.000 13.14 0.00 43.37 2.57
3232 3313 2.968574 TCTGGAGGGAGTATGCTCAATC 59.031 50.000 13.14 9.18 43.37 2.67
3233 3314 2.971330 CTGGAGGGAGTATGCTCAATCT 59.029 50.000 13.14 6.70 43.37 2.40
3234 3315 2.968574 TGGAGGGAGTATGCTCAATCTC 59.031 50.000 13.14 14.16 43.37 2.75
3236 3317 2.625790 GAGGGAGTATGCTCAATCTCGT 59.374 50.000 13.14 0.00 43.37 4.18
3237 3318 2.625790 AGGGAGTATGCTCAATCTCGTC 59.374 50.000 13.14 0.00 43.37 4.20
3238 3319 2.605823 GGGAGTATGCTCAATCTCGTCG 60.606 54.545 13.14 0.00 43.37 5.12
3239 3320 2.605823 GGAGTATGCTCAATCTCGTCGG 60.606 54.545 13.14 0.00 43.37 4.79
3240 3321 2.290916 GAGTATGCTCAATCTCGTCGGA 59.709 50.000 5.87 0.00 41.29 4.55
3241 3322 2.292016 AGTATGCTCAATCTCGTCGGAG 59.708 50.000 0.00 0.00 41.89 4.63
3242 3323 5.801147 GAGTATGCTCAATCTCGTCGGAGA 61.801 50.000 5.87 0.00 45.54 3.71
3243 3324 7.047850 GAGTATGCTCAATCTCGTCGGAGAT 62.048 48.000 5.87 0.88 44.96 2.75
3244 3325 8.736597 GAGTATGCTCAATCTCGTCGGAGATC 62.737 50.000 5.87 0.00 46.36 2.75
3249 3330 2.099143 TCTCGTCGGAGATCTGTGC 58.901 57.895 0.00 0.00 44.28 4.57
3250 3331 1.297967 CTCGTCGGAGATCTGTGCG 60.298 63.158 0.00 0.00 43.27 5.34
3252 3333 2.583593 GTCGGAGATCTGTGCGCC 60.584 66.667 4.18 0.00 40.67 6.53
3256 3337 4.819761 GAGATCTGTGCGCCGCCA 62.820 66.667 6.63 3.03 0.00 5.69
3258 3339 3.204827 GATCTGTGCGCCGCCATT 61.205 61.111 6.63 0.00 0.00 3.16
3260 3341 2.105960 GATCTGTGCGCCGCCATTAC 62.106 60.000 6.63 0.00 0.00 1.89
3307 3592 0.106819 GGAGGGGTGACTAGCGAGTA 60.107 60.000 0.00 0.00 35.45 2.59
3338 3623 8.306313 TGAAGTCAGTGGATAGATAGCTAAAA 57.694 34.615 0.00 0.00 0.00 1.52
3385 3670 8.531530 GCTAAATATTTATGAGTTTTGCAACCG 58.468 33.333 8.34 0.00 34.20 4.44
3420 3705 6.306199 TGAAAATCTCATTTGAGGAGACCAA 58.694 36.000 7.68 0.00 43.65 3.67
3474 3759 4.460263 TGTTGATTGTGTGCTTCCTAGTT 58.540 39.130 0.00 0.00 0.00 2.24
3477 3762 7.390823 TGTTGATTGTGTGCTTCCTAGTTATA 58.609 34.615 0.00 0.00 0.00 0.98
3507 3792 7.996644 AGACCGGGTGTATATTCATTATGTTTT 59.003 33.333 3.30 0.00 0.00 2.43
3522 3807 8.763356 TCATTATGTTTTGTTTTCACTTCATGC 58.237 29.630 0.00 0.00 0.00 4.06
3531 3816 9.809096 TTTGTTTTCACTTCATGCTACATTTTA 57.191 25.926 0.00 0.00 0.00 1.52
3615 3901 4.803098 ATATACCTGATAAGCACGACCC 57.197 45.455 0.00 0.00 0.00 4.46
3628 3914 1.068885 CACGACCCGATCTGATCTAGC 60.069 57.143 15.16 2.24 0.00 3.42
3631 3917 1.198178 GACCCGATCTGATCTAGCGAC 59.802 57.143 15.16 0.00 0.00 5.19
3644 3941 4.046938 TCTAGCGACTATTTTCAGCCTG 57.953 45.455 0.00 0.00 0.00 4.85
3669 3966 3.058259 CGTGTCTCAATTTTCTCGTCTCG 59.942 47.826 0.00 0.00 0.00 4.04
3684 3981 7.549615 TCTCGTCTCGAAATATTAACAGAGA 57.450 36.000 7.55 7.55 34.74 3.10
3697 3994 6.589830 ATTAACAGAGATATGTGCACGTTC 57.410 37.500 18.34 13.88 32.52 3.95
3716 4019 1.811965 TCTGGCAAACAACCATCATCG 59.188 47.619 0.00 0.00 36.36 3.84
3728 4031 1.131126 CCATCATCGCGCTTCAACTTT 59.869 47.619 5.56 0.00 0.00 2.66
3747 4050 2.848679 TGCTGCAGGGTGAGGACA 60.849 61.111 17.12 0.00 0.00 4.02
3768 4071 0.693049 ACCTGATGGACGGCTTCTTT 59.307 50.000 0.00 0.00 37.04 2.52
3850 4153 0.452184 GATCGACAAGTGCCTCGAGA 59.548 55.000 15.71 0.00 41.95 4.04
3896 4199 1.679641 TCACCATCTACCACGGCGA 60.680 57.895 16.62 0.00 0.00 5.54
3987 4290 1.144057 GATCGACGGCAAGGACCAT 59.856 57.895 0.00 0.00 0.00 3.55
4082 4385 4.195334 AGGCCATGGATCGGTGCC 62.195 66.667 18.40 7.42 42.48 5.01
4100 4404 3.891366 GTGCCATGCATAGGGTAAAGAAT 59.109 43.478 14.50 0.00 41.91 2.40
4137 4448 2.818274 GGCACCTCGGGTTTAGCG 60.818 66.667 0.00 0.00 31.02 4.26
4142 4453 1.137479 CACCTCGGGTTTAGCGGAATA 59.863 52.381 0.00 0.00 31.02 1.75
4146 4457 5.018809 ACCTCGGGTTTAGCGGAATATATA 58.981 41.667 0.00 0.00 27.29 0.86
4147 4458 5.659971 ACCTCGGGTTTAGCGGAATATATAT 59.340 40.000 0.00 0.00 27.29 0.86
4148 4459 6.155737 ACCTCGGGTTTAGCGGAATATATATT 59.844 38.462 7.72 7.72 27.29 1.28
4176 4491 1.956477 GAAGAAGAACAAGGGCTGCAA 59.044 47.619 0.50 0.00 0.00 4.08
4237 4552 1.303643 CAAGTGCCAGGGAAGGTCC 60.304 63.158 0.00 0.00 35.23 4.46
4259 4574 4.631813 CCCGAGAGTAAAATGTGAAGAAGG 59.368 45.833 0.00 0.00 0.00 3.46
4266 4581 7.878644 AGAGTAAAATGTGAAGAAGGTTACCTC 59.121 37.037 3.62 0.00 30.89 3.85
4288 4603 7.040617 ACCTCGATTAGTTTTTCTTTTCCTTCC 60.041 37.037 0.00 0.00 0.00 3.46
4306 4621 6.015918 TCCTTCCCAAGCTTTCATATTGAAA 58.984 36.000 0.00 2.96 43.37 2.69
4324 4639 5.404466 TGAAAGGCTGGGAACAATTATTG 57.596 39.130 3.07 3.07 42.06 1.90
4326 4641 2.110578 AGGCTGGGAACAATTATTGGC 58.889 47.619 9.88 1.88 42.06 4.52
4327 4642 2.110578 GGCTGGGAACAATTATTGGCT 58.889 47.619 9.88 0.00 42.06 4.75
4328 4643 2.159057 GGCTGGGAACAATTATTGGCTG 60.159 50.000 9.88 0.00 42.06 4.85
4329 4644 2.739609 GCTGGGAACAATTATTGGCTGC 60.740 50.000 9.88 1.58 42.06 5.25
4330 4645 2.762327 CTGGGAACAATTATTGGCTGCT 59.238 45.455 9.88 0.00 42.06 4.24
4331 4646 2.760092 TGGGAACAATTATTGGCTGCTC 59.240 45.455 9.88 0.00 37.44 4.26
4376 4692 4.974275 GCATGATGAATCTCATTTCGGTTG 59.026 41.667 0.00 0.00 37.20 3.77
4377 4693 5.449588 GCATGATGAATCTCATTTCGGTTGT 60.450 40.000 0.00 0.00 37.20 3.32
4378 4694 6.238456 GCATGATGAATCTCATTTCGGTTGTA 60.238 38.462 0.00 0.00 37.20 2.41
4398 4714 2.124411 AGTAACCCAGTGGACACAGTT 58.876 47.619 11.95 8.36 34.81 3.16
4406 4722 1.762957 AGTGGACACAGTTACACAGCT 59.237 47.619 5.14 0.00 36.35 4.24
4407 4723 1.867233 GTGGACACAGTTACACAGCTG 59.133 52.381 13.48 13.48 38.83 4.24
4408 4724 1.484653 TGGACACAGTTACACAGCTGT 59.515 47.619 15.25 15.25 46.01 4.40
4409 4725 2.135933 GGACACAGTTACACAGCTGTC 58.864 52.381 18.64 5.68 43.57 3.51
4412 4728 1.867233 CACAGTTACACAGCTGTCCAC 59.133 52.381 18.64 13.59 43.57 4.02
4413 4729 1.484653 ACAGTTACACAGCTGTCCACA 59.515 47.619 18.64 0.00 41.90 4.17
4414 4730 1.867233 CAGTTACACAGCTGTCCACAC 59.133 52.381 18.64 11.36 0.00 3.82
4415 4731 1.484653 AGTTACACAGCTGTCCACACA 59.515 47.619 18.64 0.00 0.00 3.72
4417 4733 0.249280 TACACAGCTGTCCACACACG 60.249 55.000 18.64 5.64 0.00 4.49
4418 4734 1.521457 CACAGCTGTCCACACACGT 60.521 57.895 18.64 0.00 0.00 4.49
4419 4735 1.227263 ACAGCTGTCCACACACGTC 60.227 57.895 15.25 0.00 0.00 4.34
4420 4736 2.027605 AGCTGTCCACACACGTCG 59.972 61.111 0.00 0.00 0.00 5.12
4421 4737 2.279252 GCTGTCCACACACGTCGT 60.279 61.111 0.00 0.00 0.00 4.34
4422 4738 2.300787 GCTGTCCACACACGTCGTC 61.301 63.158 0.00 0.00 0.00 4.20
4423 4739 1.065109 CTGTCCACACACGTCGTCA 59.935 57.895 0.00 0.00 0.00 4.35
4424 4740 1.206745 CTGTCCACACACGTCGTCAC 61.207 60.000 0.00 0.00 0.00 3.67
4462 4794 1.518325 CATAACCAGTGCACGTCCAA 58.482 50.000 12.01 0.00 0.00 3.53
4495 4827 0.817013 GTTGTATGGGCCCACACATG 59.183 55.000 35.72 0.00 33.09 3.21
4496 4828 0.969917 TTGTATGGGCCCACACATGC 60.970 55.000 35.72 19.94 33.09 4.06
4497 4829 1.379710 GTATGGGCCCACACATGCA 60.380 57.895 31.51 0.00 31.24 3.96
4498 4830 0.756442 GTATGGGCCCACACATGCAT 60.756 55.000 31.51 11.72 31.24 3.96
4500 4832 0.032316 ATGGGCCCACACATGCATAA 60.032 50.000 31.51 0.00 0.00 1.90
4501 4833 0.251967 TGGGCCCACACATGCATAAA 60.252 50.000 24.45 0.00 0.00 1.40
4502 4834 0.901124 GGGCCCACACATGCATAAAA 59.099 50.000 19.95 0.00 0.00 1.52
4504 4836 1.550072 GGCCCACACATGCATAAAACT 59.450 47.619 0.00 0.00 0.00 2.66
4505 4837 2.757868 GGCCCACACATGCATAAAACTA 59.242 45.455 0.00 0.00 0.00 2.24
4506 4838 3.384467 GGCCCACACATGCATAAAACTAT 59.616 43.478 0.00 0.00 0.00 2.12
4509 4841 6.406400 GGCCCACACATGCATAAAACTATAAA 60.406 38.462 0.00 0.00 0.00 1.40
4510 4842 6.697019 GCCCACACATGCATAAAACTATAAAG 59.303 38.462 0.00 0.00 0.00 1.85
4511 4843 7.630513 GCCCACACATGCATAAAACTATAAAGT 60.631 37.037 0.00 0.00 37.65 2.66
4512 4844 7.701924 CCCACACATGCATAAAACTATAAAGTG 59.298 37.037 0.00 1.13 35.62 3.16
4513 4845 7.220683 CCACACATGCATAAAACTATAAAGTGC 59.779 37.037 0.00 0.00 35.62 4.40
4514 4846 7.220683 CACACATGCATAAAACTATAAAGTGCC 59.779 37.037 0.00 0.00 35.62 5.01
4515 4847 7.122650 ACACATGCATAAAACTATAAAGTGCCT 59.877 33.333 0.00 0.00 35.62 4.75
4517 4849 7.122650 ACATGCATAAAACTATAAAGTGCCTGT 59.877 33.333 0.00 0.00 35.62 4.00
4518 4850 7.083875 TGCATAAAACTATAAAGTGCCTGTC 57.916 36.000 0.00 0.00 35.62 3.51
4519 4851 6.884295 TGCATAAAACTATAAAGTGCCTGTCT 59.116 34.615 0.00 0.00 35.62 3.41
4520 4852 7.393234 TGCATAAAACTATAAAGTGCCTGTCTT 59.607 33.333 0.00 0.00 35.62 3.01
4521 4853 8.244113 GCATAAAACTATAAAGTGCCTGTCTTT 58.756 33.333 0.00 0.00 35.62 2.52
4553 4896 5.006358 ACAGTACAATTGAAGTCGTTCACAC 59.994 40.000 13.59 0.00 42.60 3.82
4555 4898 2.286184 ACAATTGAAGTCGTTCACACGC 60.286 45.455 13.59 0.00 46.70 5.34
4556 4899 1.577468 ATTGAAGTCGTTCACACGCA 58.423 45.000 0.00 0.00 46.70 5.24
4605 4960 4.453480 AAAGAGGAGTTGAATGGTTGGA 57.547 40.909 0.00 0.00 0.00 3.53
4623 4981 8.519799 TGGTTGGATTTTACCTTAATGATCTC 57.480 34.615 0.00 0.00 35.41 2.75
4633 4991 6.240549 ACCTTAATGATCTCTGGTAGTTGG 57.759 41.667 0.00 0.00 0.00 3.77
4635 4993 5.131142 CCTTAATGATCTCTGGTAGTTGGGT 59.869 44.000 0.00 0.00 0.00 4.51
4639 4997 4.878968 TGATCTCTGGTAGTTGGGTATGA 58.121 43.478 0.00 0.00 0.00 2.15
4651 5009 6.067217 AGTTGGGTATGATTGCTAGAGTTT 57.933 37.500 0.00 0.00 0.00 2.66
4684 5042 5.755375 AGTGCATATGATCCAAGTACGAAAG 59.245 40.000 6.97 0.00 0.00 2.62
4708 5066 2.477245 TGTTAGCTTATGCCTCTCCCA 58.523 47.619 0.00 0.00 40.80 4.37
4747 5106 9.923143 CAATATTGATTACCGGTCTAGTTATCA 57.077 33.333 12.40 9.19 32.95 2.15
4752 5111 7.788026 TGATTACCGGTCTAGTTATCAATTGT 58.212 34.615 12.40 0.00 32.13 2.71
4825 5184 9.988350 ACAACAAACTATTATTATCTCGCAAAG 57.012 29.630 0.00 0.00 0.00 2.77
4842 5201 8.092687 TCTCGCAAAGTACTCCTAGTTTTATTT 58.907 33.333 0.00 0.00 0.00 1.40
4863 5222 9.893305 TTATTTTTGCAAAGTAGTTCTAGCTTC 57.107 29.630 12.41 0.00 0.00 3.86
4912 5295 7.113658 TGTTCTGGGTAAAGCAAATGTTAAA 57.886 32.000 0.00 0.00 0.00 1.52
4972 5367 2.758979 CCTACCTTTAGCTCCTCGTTGA 59.241 50.000 0.00 0.00 0.00 3.18
5019 5416 9.301897 GAAAAAGCTACAATTGATCCCCTATAT 57.698 33.333 13.59 0.00 0.00 0.86
5046 5443 5.535030 GTGGGTTATCAAGACCTTTTTCTGT 59.465 40.000 0.00 0.00 37.34 3.41
5048 5445 5.768164 GGGTTATCAAGACCTTTTTCTGTCA 59.232 40.000 0.00 0.00 37.34 3.58
5056 5453 3.088532 ACCTTTTTCTGTCACTGTTGCA 58.911 40.909 0.00 0.00 0.00 4.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
112 113 5.069648 TCAATGTGCAACCATACAGGAAAAA 59.930 36.000 0.00 0.00 41.22 1.94
113 114 4.586421 TCAATGTGCAACCATACAGGAAAA 59.414 37.500 0.00 0.00 41.22 2.29
114 115 4.148079 TCAATGTGCAACCATACAGGAAA 58.852 39.130 0.00 0.00 41.22 3.13
115 116 3.758023 CTCAATGTGCAACCATACAGGAA 59.242 43.478 0.00 0.00 41.22 3.36
116 117 3.244875 ACTCAATGTGCAACCATACAGGA 60.245 43.478 0.00 0.00 41.22 3.86
117 118 3.084039 ACTCAATGTGCAACCATACAGG 58.916 45.455 0.00 0.00 45.67 4.00
118 119 3.119743 CCACTCAATGTGCAACCATACAG 60.120 47.826 0.00 0.00 44.92 2.74
119 120 2.819019 CCACTCAATGTGCAACCATACA 59.181 45.455 0.00 0.00 44.92 2.29
120 121 3.081061 TCCACTCAATGTGCAACCATAC 58.919 45.455 0.00 0.00 44.92 2.39
121 122 3.431673 TCCACTCAATGTGCAACCATA 57.568 42.857 0.00 0.00 44.92 2.74
122 123 2.291209 TCCACTCAATGTGCAACCAT 57.709 45.000 0.00 0.00 44.92 3.55
123 124 2.161855 GATCCACTCAATGTGCAACCA 58.838 47.619 0.00 0.00 44.92 3.67
124 125 2.440409 AGATCCACTCAATGTGCAACC 58.560 47.619 0.00 0.00 44.92 3.77
125 126 3.254166 ACAAGATCCACTCAATGTGCAAC 59.746 43.478 0.00 0.00 44.92 4.17
126 127 3.489355 ACAAGATCCACTCAATGTGCAA 58.511 40.909 0.00 0.00 44.92 4.08
127 128 3.076621 GACAAGATCCACTCAATGTGCA 58.923 45.455 0.00 0.00 44.92 4.57
128 129 3.754188 GACAAGATCCACTCAATGTGC 57.246 47.619 0.00 0.00 44.92 4.57
150 151 5.289917 TCTTAACATGCAACCAACGTATG 57.710 39.130 0.00 0.00 33.26 2.39
151 152 5.414454 ACATCTTAACATGCAACCAACGTAT 59.586 36.000 0.00 0.00 0.00 3.06
152 153 4.757657 ACATCTTAACATGCAACCAACGTA 59.242 37.500 0.00 0.00 0.00 3.57
153 154 3.568007 ACATCTTAACATGCAACCAACGT 59.432 39.130 0.00 0.00 0.00 3.99
154 155 4.158384 GACATCTTAACATGCAACCAACG 58.842 43.478 0.00 0.00 0.00 4.10
155 156 5.119931 TGACATCTTAACATGCAACCAAC 57.880 39.130 0.00 0.00 0.00 3.77
156 157 5.981088 ATGACATCTTAACATGCAACCAA 57.019 34.783 0.00 0.00 0.00 3.67
157 158 6.179756 ACTATGACATCTTAACATGCAACCA 58.820 36.000 0.00 0.00 0.00 3.67
158 159 6.683974 ACTATGACATCTTAACATGCAACC 57.316 37.500 0.00 0.00 0.00 3.77
159 160 6.470235 GCAACTATGACATCTTAACATGCAAC 59.530 38.462 0.00 0.00 0.00 4.17
160 161 6.150809 TGCAACTATGACATCTTAACATGCAA 59.849 34.615 0.00 0.00 0.00 4.08
161 162 5.647225 TGCAACTATGACATCTTAACATGCA 59.353 36.000 0.00 0.00 0.00 3.96
162 163 6.122850 TGCAACTATGACATCTTAACATGC 57.877 37.500 0.00 0.00 0.00 4.06
163 164 7.700505 ACATGCAACTATGACATCTTAACATG 58.299 34.615 14.37 14.37 36.85 3.21
164 165 7.870509 ACATGCAACTATGACATCTTAACAT 57.129 32.000 0.00 0.00 0.00 2.71
165 166 7.390162 TCAACATGCAACTATGACATCTTAACA 59.610 33.333 0.00 0.00 0.00 2.41
166 167 7.751732 TCAACATGCAACTATGACATCTTAAC 58.248 34.615 0.00 0.00 0.00 2.01
167 168 7.823799 TCTCAACATGCAACTATGACATCTTAA 59.176 33.333 0.00 0.00 0.00 1.85
168 169 7.330262 TCTCAACATGCAACTATGACATCTTA 58.670 34.615 0.00 0.00 0.00 2.10
169 170 6.175471 TCTCAACATGCAACTATGACATCTT 58.825 36.000 0.00 0.00 0.00 2.40
170 171 5.737860 TCTCAACATGCAACTATGACATCT 58.262 37.500 0.00 0.00 0.00 2.90
171 172 6.615264 ATCTCAACATGCAACTATGACATC 57.385 37.500 0.00 0.00 0.00 3.06
172 173 8.510243 TTTATCTCAACATGCAACTATGACAT 57.490 30.769 0.00 0.00 0.00 3.06
173 174 7.920160 TTTATCTCAACATGCAACTATGACA 57.080 32.000 0.00 0.00 0.00 3.58
199 200 6.676237 ATCGTTTGCCTTGTTTCAATTTTT 57.324 29.167 0.00 0.00 0.00 1.94
200 201 6.676237 AATCGTTTGCCTTGTTTCAATTTT 57.324 29.167 0.00 0.00 0.00 1.82
201 202 6.676237 AAATCGTTTGCCTTGTTTCAATTT 57.324 29.167 0.00 0.00 0.00 1.82
202 203 6.201997 GGTAAATCGTTTGCCTTGTTTCAATT 59.798 34.615 9.25 0.00 41.55 2.32
203 204 5.694458 GGTAAATCGTTTGCCTTGTTTCAAT 59.306 36.000 9.25 0.00 41.55 2.57
204 205 5.044558 GGTAAATCGTTTGCCTTGTTTCAA 58.955 37.500 9.25 0.00 41.55 2.69
205 206 4.098044 TGGTAAATCGTTTGCCTTGTTTCA 59.902 37.500 14.81 0.00 44.59 2.69
206 207 4.612943 TGGTAAATCGTTTGCCTTGTTTC 58.387 39.130 14.81 0.00 44.59 2.78
207 208 4.657436 TGGTAAATCGTTTGCCTTGTTT 57.343 36.364 14.81 0.00 44.59 2.83
208 209 4.864704 ATGGTAAATCGTTTGCCTTGTT 57.135 36.364 14.81 1.13 44.59 2.83
209 210 4.864704 AATGGTAAATCGTTTGCCTTGT 57.135 36.364 14.81 3.65 44.59 3.16
210 211 7.826260 ATAAAATGGTAAATCGTTTGCCTTG 57.174 32.000 14.81 0.00 44.59 3.61
211 212 8.091449 TCAATAAAATGGTAAATCGTTTGCCTT 58.909 29.630 14.81 8.65 44.59 4.35
212 213 7.607250 TCAATAAAATGGTAAATCGTTTGCCT 58.393 30.769 14.81 2.64 44.59 4.75
213 214 7.820044 TCAATAAAATGGTAAATCGTTTGCC 57.180 32.000 9.49 9.49 44.56 4.52
236 237 9.508567 GCATTGTCTAAACATTCTTCCTTAATC 57.491 33.333 0.00 0.00 34.73 1.75
237 238 8.470002 GGCATTGTCTAAACATTCTTCCTTAAT 58.530 33.333 0.00 0.00 34.73 1.40
238 239 7.450014 TGGCATTGTCTAAACATTCTTCCTTAA 59.550 33.333 0.00 0.00 34.73 1.85
239 240 6.945435 TGGCATTGTCTAAACATTCTTCCTTA 59.055 34.615 0.00 0.00 34.73 2.69
240 241 5.774690 TGGCATTGTCTAAACATTCTTCCTT 59.225 36.000 0.00 0.00 34.73 3.36
241 242 5.183904 GTGGCATTGTCTAAACATTCTTCCT 59.816 40.000 0.00 0.00 34.73 3.36
242 243 5.402398 GTGGCATTGTCTAAACATTCTTCC 58.598 41.667 0.00 0.00 34.73 3.46
243 244 5.183904 AGGTGGCATTGTCTAAACATTCTTC 59.816 40.000 0.00 0.00 34.73 2.87
244 245 5.079643 AGGTGGCATTGTCTAAACATTCTT 58.920 37.500 0.00 0.00 34.73 2.52
245 246 4.666512 AGGTGGCATTGTCTAAACATTCT 58.333 39.130 0.00 0.00 34.73 2.40
246 247 5.648092 AGTAGGTGGCATTGTCTAAACATTC 59.352 40.000 0.00 0.00 34.73 2.67
247 248 5.570320 AGTAGGTGGCATTGTCTAAACATT 58.430 37.500 0.00 0.00 34.73 2.71
248 249 5.045578 AGAGTAGGTGGCATTGTCTAAACAT 60.046 40.000 0.00 0.00 34.73 2.71
249 250 4.286032 AGAGTAGGTGGCATTGTCTAAACA 59.714 41.667 0.00 0.00 0.00 2.83
250 251 4.833390 AGAGTAGGTGGCATTGTCTAAAC 58.167 43.478 0.00 0.00 0.00 2.01
251 252 4.381612 CGAGAGTAGGTGGCATTGTCTAAA 60.382 45.833 0.00 0.00 0.00 1.85
252 253 3.130516 CGAGAGTAGGTGGCATTGTCTAA 59.869 47.826 0.00 0.00 0.00 2.10
253 254 2.688446 CGAGAGTAGGTGGCATTGTCTA 59.312 50.000 0.00 0.00 0.00 2.59
254 255 1.478510 CGAGAGTAGGTGGCATTGTCT 59.521 52.381 0.00 0.00 0.00 3.41
255 256 1.927895 CGAGAGTAGGTGGCATTGTC 58.072 55.000 0.00 0.00 0.00 3.18
256 257 0.108138 GCGAGAGTAGGTGGCATTGT 60.108 55.000 0.00 0.00 0.00 2.71
257 258 1.148157 CGCGAGAGTAGGTGGCATTG 61.148 60.000 0.00 0.00 0.00 2.82
258 259 1.141881 CGCGAGAGTAGGTGGCATT 59.858 57.895 0.00 0.00 0.00 3.56
259 260 2.808315 CGCGAGAGTAGGTGGCAT 59.192 61.111 0.00 0.00 0.00 4.40
260 261 4.129737 GCGCGAGAGTAGGTGGCA 62.130 66.667 12.10 0.00 0.00 4.92
261 262 4.874977 GGCGCGAGAGTAGGTGGC 62.875 72.222 12.10 0.00 0.00 5.01
262 263 2.298158 AATGGCGCGAGAGTAGGTGG 62.298 60.000 12.10 0.00 0.00 4.61
263 264 0.460284 AAATGGCGCGAGAGTAGGTG 60.460 55.000 12.10 0.00 0.00 4.00
264 265 1.108776 TAAATGGCGCGAGAGTAGGT 58.891 50.000 12.10 0.00 0.00 3.08
265 266 1.067212 AGTAAATGGCGCGAGAGTAGG 59.933 52.381 12.10 0.00 0.00 3.18
266 267 2.493713 AGTAAATGGCGCGAGAGTAG 57.506 50.000 12.10 0.00 0.00 2.57
267 268 3.003068 GTCTAGTAAATGGCGCGAGAGTA 59.997 47.826 12.10 0.00 0.00 2.59
268 269 2.022195 TCTAGTAAATGGCGCGAGAGT 58.978 47.619 12.10 0.00 0.00 3.24
269 270 2.223502 TGTCTAGTAAATGGCGCGAGAG 60.224 50.000 12.10 0.00 0.00 3.20
270 271 1.746787 TGTCTAGTAAATGGCGCGAGA 59.253 47.619 12.10 0.00 0.00 4.04
271 272 2.120232 CTGTCTAGTAAATGGCGCGAG 58.880 52.381 12.10 0.00 0.00 5.03
272 273 1.202371 CCTGTCTAGTAAATGGCGCGA 60.202 52.381 12.10 0.00 0.00 5.87
273 274 1.202371 TCCTGTCTAGTAAATGGCGCG 60.202 52.381 0.00 0.00 0.00 6.86
274 275 2.474816 CTCCTGTCTAGTAAATGGCGC 58.525 52.381 0.00 0.00 0.00 6.53
275 276 2.474816 GCTCCTGTCTAGTAAATGGCG 58.525 52.381 0.00 0.00 0.00 5.69
276 277 2.159085 ACGCTCCTGTCTAGTAAATGGC 60.159 50.000 0.00 0.00 0.00 4.40
277 278 3.491104 GGACGCTCCTGTCTAGTAAATGG 60.491 52.174 0.00 0.00 38.91 3.16
278 279 3.707793 GGACGCTCCTGTCTAGTAAATG 58.292 50.000 0.00 0.00 38.91 2.32
315 316 4.351874 TCACTGCTACAAGCCTAAAAGT 57.648 40.909 0.00 0.00 41.51 2.66
316 317 5.008613 TGTTTCACTGCTACAAGCCTAAAAG 59.991 40.000 0.00 0.00 41.51 2.27
318 319 4.456535 TGTTTCACTGCTACAAGCCTAAA 58.543 39.130 0.00 0.00 41.51 1.85
320 321 3.762407 TGTTTCACTGCTACAAGCCTA 57.238 42.857 0.00 0.00 41.51 3.93
321 322 2.638480 TGTTTCACTGCTACAAGCCT 57.362 45.000 0.00 0.00 41.51 4.58
338 339 1.670674 CCAACTGCACGTACCGTATGT 60.671 52.381 0.00 0.00 38.32 2.29
349 350 3.419759 CCGCGTACCCAACTGCAC 61.420 66.667 4.92 0.00 0.00 4.57
362 363 3.386543 ATTCCTGAAGAATCCCGCG 57.613 52.632 0.00 0.00 41.60 6.46
375 378 2.376518 TCCTCCACAGCAAAAGATTCCT 59.623 45.455 0.00 0.00 0.00 3.36
427 430 2.427453 AGCGATCGATAGTCACAAAGGT 59.573 45.455 21.57 0.00 37.40 3.50
449 452 2.282674 ACCGTGTACGCTCCTCCA 60.283 61.111 4.67 0.00 38.18 3.86
495 498 2.674796 ATGTTGTTCCTCTACGGCTC 57.325 50.000 0.00 0.00 0.00 4.70
580 586 3.617263 GGAAAACTCCGTATGTACAGCAG 59.383 47.826 0.33 0.00 0.00 4.24
581 587 3.592059 GGAAAACTCCGTATGTACAGCA 58.408 45.455 0.33 0.00 0.00 4.41
621 627 2.511218 ACCGGGATACTACTACTCCACA 59.489 50.000 6.32 0.00 0.00 4.17
630 636 2.880443 TGGACCATACCGGGATACTAC 58.120 52.381 6.32 0.00 40.22 2.73
631 637 3.437213 CATGGACCATACCGGGATACTA 58.563 50.000 6.67 0.00 40.22 1.82
632 638 2.257207 CATGGACCATACCGGGATACT 58.743 52.381 6.67 0.00 40.22 2.12
681 692 2.362889 CCGGGCAGCCCAAGAAAT 60.363 61.111 30.86 0.00 45.83 2.17
741 758 0.396811 GGCTAACACCACTGACACCT 59.603 55.000 0.00 0.00 0.00 4.00
779 796 1.241315 ATTAAAGCGCAGGCGTTGGT 61.241 50.000 11.47 4.06 46.35 3.67
803 820 4.489810 GAGAGTGACGAGTGAATTGATGT 58.510 43.478 0.00 0.00 0.00 3.06
886 903 3.383185 TGGTGGTGGTAAAAGCTTTCTTG 59.617 43.478 13.10 0.00 31.78 3.02
909 926 4.974721 AGCAAAGGGTGGCGGTGG 62.975 66.667 0.00 0.00 34.54 4.61
910 927 3.365265 GAGCAAAGGGTGGCGGTG 61.365 66.667 0.00 0.00 34.54 4.94
911 928 2.713531 ATTGAGCAAAGGGTGGCGGT 62.714 55.000 0.00 0.00 34.54 5.68
912 929 1.535204 AATTGAGCAAAGGGTGGCGG 61.535 55.000 0.00 0.00 34.54 6.13
913 930 0.388907 CAATTGAGCAAAGGGTGGCG 60.389 55.000 0.00 0.00 34.54 5.69
914 931 0.671472 GCAATTGAGCAAAGGGTGGC 60.671 55.000 10.34 0.00 0.00 5.01
915 932 0.037046 GGCAATTGAGCAAAGGGTGG 60.037 55.000 10.34 0.00 35.83 4.61
916 933 0.037046 GGGCAATTGAGCAAAGGGTG 60.037 55.000 10.34 0.00 35.83 4.61
917 934 0.471591 TGGGCAATTGAGCAAAGGGT 60.472 50.000 10.34 0.00 35.83 4.34
1093 1126 1.938657 TAGACGAGGCAGAGCAGCAC 61.939 60.000 0.00 0.00 35.83 4.40
1427 1463 4.700365 TGTGCTCGTCGTCGCCTG 62.700 66.667 0.00 0.00 36.96 4.85
1428 1464 3.898627 CTTGTGCTCGTCGTCGCCT 62.899 63.158 0.00 0.00 36.96 5.52
1911 1951 3.541831 CGCGACGATGTGGAACGG 61.542 66.667 0.00 0.00 42.39 4.44
2071 2111 0.250513 AAGCCAAGAGGTTAGAGCGG 59.749 55.000 0.00 0.00 37.19 5.52
2339 2384 0.876342 GAGCTAATTCTCACCGCCCG 60.876 60.000 0.00 0.00 33.41 6.13
2368 2413 4.460731 CCAATGGGAGGAAGAAGAAGAAAC 59.539 45.833 0.00 0.00 35.59 2.78
2369 2414 4.666512 CCAATGGGAGGAAGAAGAAGAAA 58.333 43.478 0.00 0.00 35.59 2.52
2620 2689 4.715983 CACAGCAAGTGCAACCAC 57.284 55.556 6.00 0.00 45.16 4.16
2628 2697 1.560004 CGCATGTCGTCACAGCAAGT 61.560 55.000 8.98 0.00 35.41 3.16
2633 2702 1.073216 GGTCTCGCATGTCGTCACAG 61.073 60.000 8.91 1.07 35.41 3.66
2650 2719 3.067106 CAGCGTTCAAACAGTAGATGGT 58.933 45.455 0.00 0.00 0.00 3.55
2751 2821 6.211384 GGCAGGCCTAAATATTACAATCCAAT 59.789 38.462 3.98 0.00 0.00 3.16
2807 2877 1.606224 GCAATGTTGTTGGGCAGGAAG 60.606 52.381 0.00 0.00 0.00 3.46
2815 2885 3.059733 CCATGTTTTCGCAATGTTGTTGG 60.060 43.478 0.00 0.00 0.00 3.77
2816 2886 3.059733 CCCATGTTTTCGCAATGTTGTTG 60.060 43.478 0.00 0.00 0.00 3.33
2817 2887 3.129871 CCCATGTTTTCGCAATGTTGTT 58.870 40.909 0.00 0.00 0.00 2.83
2864 2934 5.923204 TCAAAATTTGGCTAGGCAAAAAGA 58.077 33.333 38.19 29.39 34.96 2.52
2910 2986 3.572632 AGGACGCTACAGGTATGTCTA 57.427 47.619 10.08 0.00 41.01 2.59
2916 2992 0.613853 AGGCAAGGACGCTACAGGTA 60.614 55.000 0.00 0.00 0.00 3.08
2917 2993 1.481056 AAGGCAAGGACGCTACAGGT 61.481 55.000 0.00 0.00 0.00 4.00
2919 2995 0.798776 CAAAGGCAAGGACGCTACAG 59.201 55.000 0.00 0.00 0.00 2.74
2921 2997 0.955919 AGCAAAGGCAAGGACGCTAC 60.956 55.000 0.00 0.00 44.61 3.58
2922 2998 0.611200 TAGCAAAGGCAAGGACGCTA 59.389 50.000 0.00 0.00 44.61 4.26
2923 2999 0.955919 GTAGCAAAGGCAAGGACGCT 60.956 55.000 0.00 0.00 44.61 5.07
2925 3001 1.234821 TTGTAGCAAAGGCAAGGACG 58.765 50.000 0.00 0.00 44.61 4.79
2926 3002 2.623416 ACTTTGTAGCAAAGGCAAGGAC 59.377 45.455 21.01 0.00 44.61 3.85
2927 3003 2.622942 CACTTTGTAGCAAAGGCAAGGA 59.377 45.455 21.01 0.00 44.61 3.36
2929 3005 2.288395 CCCACTTTGTAGCAAAGGCAAG 60.288 50.000 21.01 10.65 44.61 4.01
2998 3074 1.066143 CAACCACCTATGAGAAGCCGT 60.066 52.381 0.00 0.00 0.00 5.68
3008 3084 3.272551 ACCTCCTCTAGACAACCACCTAT 59.727 47.826 0.00 0.00 0.00 2.57
3009 3085 2.653366 ACCTCCTCTAGACAACCACCTA 59.347 50.000 0.00 0.00 0.00 3.08
3036 3112 7.769044 AGTGCTCAATTTGTTAGTATTACCGAT 59.231 33.333 0.00 0.00 0.00 4.18
3045 3121 5.827797 TGGAGAAAGTGCTCAATTTGTTAGT 59.172 36.000 0.00 0.00 36.62 2.24
3070 3146 3.540493 TCCCATGCCTGATATTCCCATA 58.460 45.455 0.00 0.00 0.00 2.74
3096 3175 6.199908 TGTTTTGCTCATTAAATTGACAACCG 59.800 34.615 0.00 0.00 0.00 4.44
3129 3208 9.542462 GTCTATGTATCTTTTTGTGGCATAGTA 57.458 33.333 0.00 0.00 37.01 1.82
3130 3209 8.046708 TGTCTATGTATCTTTTTGTGGCATAGT 58.953 33.333 0.00 0.00 37.01 2.12
3131 3210 8.437360 TGTCTATGTATCTTTTTGTGGCATAG 57.563 34.615 0.00 0.00 37.02 2.23
3149 3230 9.803130 CAATCTAATTAGCGAAACATGTCTATG 57.197 33.333 7.67 0.00 40.24 2.23
3224 3305 2.868253 TCTCCGACGAGATTGAGCA 58.132 52.632 0.00 0.00 40.34 4.26
3232 3313 1.297967 CGCACAGATCTCCGACGAG 60.298 63.158 0.00 0.00 37.48 4.18
3233 3314 2.791927 CGCACAGATCTCCGACGA 59.208 61.111 0.00 0.00 0.00 4.20
3234 3315 2.951745 GCGCACAGATCTCCGACG 60.952 66.667 0.30 5.60 0.00 5.12
3236 3317 4.193334 CGGCGCACAGATCTCCGA 62.193 66.667 10.83 0.00 42.43 4.55
3239 3320 4.819761 TGGCGGCGCACAGATCTC 62.820 66.667 34.36 13.93 0.00 2.75
3240 3321 2.310327 TAATGGCGGCGCACAGATCT 62.310 55.000 34.36 15.65 0.00 2.75
3241 3322 1.887242 TAATGGCGGCGCACAGATC 60.887 57.895 34.36 15.52 0.00 2.75
3242 3323 2.180204 GTAATGGCGGCGCACAGAT 61.180 57.895 34.36 21.28 0.00 2.90
3243 3324 2.817834 GTAATGGCGGCGCACAGA 60.818 61.111 34.36 17.00 0.00 3.41
3244 3325 3.876198 GGTAATGGCGGCGCACAG 61.876 66.667 34.36 0.09 0.00 3.66
3249 3330 2.202770 TACACGGTAATGGCGGCG 60.203 61.111 0.51 0.51 0.00 6.46
3250 3331 1.153509 ACTACACGGTAATGGCGGC 60.154 57.895 0.00 0.00 0.00 6.53
3252 3333 0.738063 TGCACTACACGGTAATGGCG 60.738 55.000 0.00 0.00 0.00 5.69
3253 3334 1.444836 TTGCACTACACGGTAATGGC 58.555 50.000 0.00 0.00 0.00 4.40
3254 3335 4.272504 CCTTATTGCACTACACGGTAATGG 59.727 45.833 0.00 0.00 0.00 3.16
3255 3336 4.272504 CCCTTATTGCACTACACGGTAATG 59.727 45.833 0.00 0.00 0.00 1.90
3256 3337 4.448210 CCCTTATTGCACTACACGGTAAT 58.552 43.478 0.00 0.00 0.00 1.89
3258 3339 2.168936 CCCCTTATTGCACTACACGGTA 59.831 50.000 0.00 0.00 0.00 4.02
3260 3341 1.065709 ACCCCTTATTGCACTACACGG 60.066 52.381 0.00 0.00 0.00 4.94
3265 3550 1.286553 CCCCAACCCCTTATTGCACTA 59.713 52.381 0.00 0.00 0.00 2.74
3299 3584 4.645136 ACTGACTTCAATCCATACTCGCTA 59.355 41.667 0.00 0.00 0.00 4.26
3307 3592 6.760440 ATCTATCCACTGACTTCAATCCAT 57.240 37.500 0.00 0.00 0.00 3.41
3338 3623 9.905713 TTTAGCCATGAGAGAAATATGTAACTT 57.094 29.630 0.00 0.00 0.00 2.66
3412 3697 5.942826 AGATCTCTTTCATGTTTTGGTCTCC 59.057 40.000 0.00 0.00 0.00 3.71
3451 3736 4.460263 ACTAGGAAGCACACAATCAACAA 58.540 39.130 0.00 0.00 0.00 2.83
3474 3759 6.545567 TGAATATACACCCGGTCTCTGTATA 58.454 40.000 15.44 15.44 37.61 1.47
3477 3762 3.638860 TGAATATACACCCGGTCTCTGT 58.361 45.455 0.00 0.00 0.00 3.41
3507 3792 9.462174 CTTAAAATGTAGCATGAAGTGAAAACA 57.538 29.630 0.00 0.00 0.00 2.83
3597 3883 0.742505 CGGGTCGTGCTTATCAGGTA 59.257 55.000 0.00 0.00 32.68 3.08
3615 3901 6.374578 TGAAAATAGTCGCTAGATCAGATCG 58.625 40.000 4.67 0.00 0.00 3.69
3628 3914 1.590238 CGAGCAGGCTGAAAATAGTCG 59.410 52.381 20.86 9.73 0.00 4.18
3631 3917 2.349886 GACACGAGCAGGCTGAAAATAG 59.650 50.000 20.86 5.23 0.00 1.73
3644 3941 2.731976 ACGAGAAAATTGAGACACGAGC 59.268 45.455 0.00 0.00 0.00 5.03
3669 3966 8.765219 ACGTGCACATATCTCTGTTAATATTTC 58.235 33.333 18.64 0.00 0.00 2.17
3684 3981 1.819928 TTGCCAGAACGTGCACATAT 58.180 45.000 18.64 1.11 37.18 1.78
3697 3994 1.733389 GCGATGATGGTTGTTTGCCAG 60.733 52.381 0.00 0.00 39.65 4.85
3716 4019 1.543106 GCAGCACAAAGTTGAAGCGC 61.543 55.000 0.00 0.00 37.64 5.92
3728 4031 2.848679 TCCTCACCCTGCAGCACA 60.849 61.111 8.66 0.00 0.00 4.57
3747 4050 1.794714 AGAAGCCGTCCATCAGGTAT 58.205 50.000 0.00 0.00 35.89 2.73
3768 4071 2.983030 GCGATGTGGGTGTGGCAA 60.983 61.111 0.00 0.00 0.00 4.52
3896 4199 4.104417 GGAGCAGCTCGTCGTCGT 62.104 66.667 16.47 0.00 38.33 4.34
4075 4378 1.051556 TACCCTATGCATGGCACCGA 61.052 55.000 10.16 0.00 43.04 4.69
4082 4385 4.728772 TCCCATTCTTTACCCTATGCATG 58.271 43.478 10.16 0.00 0.00 4.06
4100 4404 4.293671 CCCAAAACCCCGCTCCCA 62.294 66.667 0.00 0.00 0.00 4.37
4146 4457 5.239525 CCCTTGTTCTTCTTCGAAGACAAAT 59.760 40.000 27.03 0.00 34.32 2.32
4147 4458 4.574828 CCCTTGTTCTTCTTCGAAGACAAA 59.425 41.667 27.03 19.77 34.32 2.83
4148 4459 4.127171 CCCTTGTTCTTCTTCGAAGACAA 58.873 43.478 27.03 23.87 34.32 3.18
4183 4498 0.592637 CAGAAATGTGGTTGCTCGCA 59.407 50.000 0.00 0.00 0.00 5.10
4230 4545 3.933332 CACATTTTACTCTCGGGACCTTC 59.067 47.826 0.00 0.00 0.00 3.46
4237 4552 5.238583 ACCTTCTTCACATTTTACTCTCGG 58.761 41.667 0.00 0.00 0.00 4.63
4259 4574 8.781196 AGGAAAAGAAAAACTAATCGAGGTAAC 58.219 33.333 0.00 0.00 0.00 2.50
4266 4581 6.977213 TGGGAAGGAAAAGAAAAACTAATCG 58.023 36.000 0.00 0.00 0.00 3.34
4306 4621 2.110578 GCCAATAATTGTTCCCAGCCT 58.889 47.619 0.00 0.00 0.00 4.58
4324 4639 3.313526 CACAATTATACACAGGAGCAGCC 59.686 47.826 0.00 0.00 0.00 4.85
4326 4641 7.712639 ACTTATCACAATTATACACAGGAGCAG 59.287 37.037 0.00 0.00 0.00 4.24
4327 4642 7.495606 CACTTATCACAATTATACACAGGAGCA 59.504 37.037 0.00 0.00 0.00 4.26
4328 4643 7.519008 GCACTTATCACAATTATACACAGGAGC 60.519 40.741 0.00 0.00 0.00 4.70
4329 4644 7.495606 TGCACTTATCACAATTATACACAGGAG 59.504 37.037 0.00 0.00 0.00 3.69
4330 4645 7.334858 TGCACTTATCACAATTATACACAGGA 58.665 34.615 0.00 0.00 0.00 3.86
4331 4646 7.552458 TGCACTTATCACAATTATACACAGG 57.448 36.000 0.00 0.00 0.00 4.00
4376 4692 2.631545 ACTGTGTCCACTGGGTTACTAC 59.368 50.000 8.82 0.00 35.00 2.73
4377 4693 2.966915 ACTGTGTCCACTGGGTTACTA 58.033 47.619 8.82 0.00 35.00 1.82
4378 4694 1.802553 ACTGTGTCCACTGGGTTACT 58.197 50.000 8.82 0.00 35.00 2.24
4398 4714 0.249280 CGTGTGTGGACAGCTGTGTA 60.249 55.000 27.27 10.05 36.88 2.90
4406 4722 1.226745 GTGACGACGTGTGTGGACA 60.227 57.895 4.58 0.00 0.00 4.02
4407 4723 2.290789 CGTGACGACGTGTGTGGAC 61.291 63.158 4.58 0.00 40.91 4.02
4408 4724 2.025013 CGTGACGACGTGTGTGGA 59.975 61.111 4.58 0.00 40.91 4.02
4409 4725 3.028019 CCGTGACGACGTGTGTGG 61.028 66.667 6.54 0.00 44.54 4.17
4412 4728 4.640855 AGCCCGTGACGACGTGTG 62.641 66.667 6.54 0.00 44.54 3.82
4413 4729 4.338539 GAGCCCGTGACGACGTGT 62.339 66.667 6.54 0.00 44.54 4.49
4423 4739 3.961838 TTTTATGCCGCGAGCCCGT 62.962 57.895 8.23 1.21 42.71 5.28
4424 4740 3.199190 TTTTATGCCGCGAGCCCG 61.199 61.111 8.23 0.00 42.71 6.13
4426 4742 1.724582 ATGGTTTTATGCCGCGAGCC 61.725 55.000 8.23 0.00 42.71 4.70
4427 4743 0.941542 TATGGTTTTATGCCGCGAGC 59.058 50.000 8.23 10.56 44.14 5.03
4428 4744 2.286772 GGTTATGGTTTTATGCCGCGAG 60.287 50.000 8.23 0.00 0.00 5.03
4429 4745 1.671845 GGTTATGGTTTTATGCCGCGA 59.328 47.619 8.23 0.00 0.00 5.87
4430 4746 1.402259 TGGTTATGGTTTTATGCCGCG 59.598 47.619 0.00 0.00 0.00 6.46
4462 4794 5.594317 GCCCATACAACTCTTTGACCATATT 59.406 40.000 0.00 0.00 36.48 1.28
4476 4808 4.832741 TGTGTGGGCCCATACAAC 57.167 55.556 42.41 29.63 43.26 3.32
4495 4827 7.321745 AGACAGGCACTTTATAGTTTTATGC 57.678 36.000 0.00 0.00 34.60 3.14
4524 4856 9.478768 TGAACGACTTCAATTGTACTGTATTAA 57.521 29.630 5.13 0.00 33.20 1.40
4525 4857 8.918658 GTGAACGACTTCAATTGTACTGTATTA 58.081 33.333 5.13 0.00 38.17 0.98
4528 4871 6.199531 GTGTGAACGACTTCAATTGTACTGTA 59.800 38.462 5.13 0.00 38.17 2.74
4539 4882 0.101579 TCTGCGTGTGAACGACTTCA 59.898 50.000 1.87 0.00 33.76 3.02
4549 4892 1.079819 CCCACCTACTCTGCGTGTG 60.080 63.158 0.00 0.00 0.00 3.82
4553 4896 0.034896 AACAACCCACCTACTCTGCG 59.965 55.000 0.00 0.00 0.00 5.18
4554 4897 1.523758 CAACAACCCACCTACTCTGC 58.476 55.000 0.00 0.00 0.00 4.26
4555 4898 1.523758 GCAACAACCCACCTACTCTG 58.476 55.000 0.00 0.00 0.00 3.35
4556 4899 0.034896 CGCAACAACCCACCTACTCT 59.965 55.000 0.00 0.00 0.00 3.24
4623 4981 4.156455 AGCAATCATACCCAACTACCAG 57.844 45.455 0.00 0.00 0.00 4.00
4639 4997 7.337689 TGCACTTATGATTGAAACTCTAGCAAT 59.662 33.333 0.00 0.00 35.14 3.56
4651 5009 7.940688 ACTTGGATCATATGCACTTATGATTGA 59.059 33.333 19.14 9.72 45.13 2.57
4684 5042 4.563786 GGGAGAGGCATAAGCTAACATACC 60.564 50.000 0.00 0.00 41.70 2.73
4696 5054 6.434028 GCAATTTTATATGTGGGAGAGGCATA 59.566 38.462 0.00 0.00 0.00 3.14
4752 5111 7.016268 ACACAAGAGAAGTATTTTGTCCCTAGA 59.984 37.037 0.00 0.00 31.84 2.43
4809 5168 9.080097 ACTAGGAGTACTTTGCGAGATAATAAT 57.920 33.333 0.00 0.00 0.00 1.28
4819 5178 9.113876 CAAAAATAAAACTAGGAGTACTTTGCG 57.886 33.333 0.00 0.00 0.00 4.85
4825 5184 9.961265 ACTTTGCAAAAATAAAACTAGGAGTAC 57.039 29.630 13.84 0.00 0.00 2.73
4842 5201 5.820423 TGTGAAGCTAGAACTACTTTGCAAA 59.180 36.000 12.14 12.14 32.35 3.68
4853 5212 6.803154 ATTTTGTAGGTGTGAAGCTAGAAC 57.197 37.500 0.00 0.00 0.00 3.01
4863 5222 9.825972 CAAGTATGAAACTATTTTGTAGGTGTG 57.174 33.333 0.00 0.00 37.50 3.82
4894 5277 7.434013 CCGATACATTTAACATTTGCTTTACCC 59.566 37.037 0.00 0.00 0.00 3.69
4972 5367 6.636666 TTCGATAAATAAAAGCGTCGAACT 57.363 33.333 0.00 0.00 41.41 3.01
5019 5416 6.609616 AGAAAAAGGTCTTGATAACCCACAAA 59.390 34.615 0.00 0.00 37.52 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.