Multiple sequence alignment - TraesCS1B01G193000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G193000 chr1B 100.000 4917 0 0 1 4917 346164227 346169143 0.000000e+00 9081.0
1 TraesCS1B01G193000 chr1B 88.166 507 42 12 235 738 648107987 648107496 5.480000e-164 588.0
2 TraesCS1B01G193000 chr1B 87.771 507 45 10 235 737 688402208 688401715 1.190000e-160 577.0
3 TraesCS1B01G193000 chr1B 91.262 206 16 2 1 205 535359755 535359551 3.750000e-71 279.0
4 TraesCS1B01G193000 chr1B 89.109 202 21 1 1 202 625078683 625078883 2.940000e-62 250.0
5 TraesCS1B01G193000 chr1B 89.000 200 22 0 3 202 387382481 387382680 1.060000e-61 248.0
6 TraesCS1B01G193000 chr1B 88.832 197 18 3 6 202 488477763 488477955 6.360000e-59 239.0
7 TraesCS1B01G193000 chr1B 88.276 145 16 1 58 202 668139139 668139282 6.540000e-39 172.0
8 TraesCS1B01G193000 chr1B 86.029 136 19 0 3302 3437 491039802 491039667 3.970000e-31 147.0
9 TraesCS1B01G193000 chr1B 98.077 52 0 1 202 252 603768872 603768821 6.780000e-14 89.8
10 TraesCS1B01G193000 chr1A 90.158 2154 111 33 2103 4217 335827080 335829171 0.000000e+00 2710.0
11 TraesCS1B01G193000 chr1A 93.755 1265 50 10 805 2054 335825832 335827082 0.000000e+00 1871.0
12 TraesCS1B01G193000 chr1A 90.492 610 45 9 4312 4917 335830744 335831344 0.000000e+00 793.0
13 TraesCS1B01G193000 chr1A 87.500 136 17 0 3302 3437 465453629 465453494 1.830000e-34 158.0
14 TraesCS1B01G193000 chr1A 96.552 58 2 0 4522 4579 47817214 47817157 4.050000e-16 97.1
15 TraesCS1B01G193000 chr1A 94.118 51 3 0 736 786 335825782 335825832 1.470000e-10 78.7
16 TraesCS1B01G193000 chr1D 88.081 2022 117 52 2232 4208 267386408 267384466 0.000000e+00 2285.0
17 TraesCS1B01G193000 chr1D 94.240 1389 57 12 749 2124 267387784 267386406 0.000000e+00 2100.0
18 TraesCS1B01G193000 chr1D 91.517 613 36 8 4312 4917 267380870 267380267 0.000000e+00 830.0
19 TraesCS1B01G193000 chr1D 90.265 113 8 3 4741 4851 474916703 474916814 1.430000e-30 145.0
20 TraesCS1B01G193000 chr1D 85.294 136 20 0 3302 3437 366724877 366725012 1.850000e-29 141.0
21 TraesCS1B01G193000 chr1D 96.610 59 2 0 4523 4581 474916649 474916707 1.130000e-16 99.0
22 TraesCS1B01G193000 chr6B 88.431 510 44 12 236 737 198914084 198913582 7.040000e-168 601.0
23 TraesCS1B01G193000 chr6B 100.000 28 0 0 3348 3375 640978738 640978711 9.000000e-03 52.8
24 TraesCS1B01G193000 chr2B 90.343 466 32 12 277 739 742657284 742656829 2.530000e-167 599.0
25 TraesCS1B01G193000 chr2B 87.719 513 47 9 229 737 154243587 154244087 7.090000e-163 584.0
26 TraesCS1B01G193000 chr2B 87.771 507 47 11 235 737 448926800 448926305 3.300000e-161 579.0
27 TraesCS1B01G193000 chr3B 87.992 508 51 9 235 737 135358726 135359228 4.240000e-165 592.0
28 TraesCS1B01G193000 chr3B 87.426 509 50 9 236 737 662418998 662418497 1.540000e-159 573.0
29 TraesCS1B01G193000 chr3B 89.655 203 16 4 1 202 530332676 530332874 2.270000e-63 254.0
30 TraesCS1B01G193000 chr3B 89.109 202 18 4 2 202 794881765 794881963 1.060000e-61 248.0
31 TraesCS1B01G193000 chr3B 85.065 154 18 5 99 252 803508070 803508218 8.520000e-33 152.0
32 TraesCS1B01G193000 chr3B 91.429 105 9 0 4747 4851 262837506 262837402 1.430000e-30 145.0
33 TraesCS1B01G193000 chr3B 98.039 51 1 0 202 252 595295599 595295549 6.780000e-14 89.8
34 TraesCS1B01G193000 chr5B 87.719 513 45 12 235 738 461578106 461577603 2.550000e-162 582.0
35 TraesCS1B01G193000 chr5B 92.793 111 8 0 4741 4851 45021655 45021765 1.420000e-35 161.0
36 TraesCS1B01G193000 chr4B 89.904 208 15 5 1 206 37117989 37117786 3.770000e-66 263.0
37 TraesCS1B01G193000 chr7B 88.614 202 18 4 1 202 180685603 180685799 1.770000e-59 241.0
38 TraesCS1B01G193000 chr7B 82.727 110 13 4 148 252 583368528 583368420 5.240000e-15 93.5
39 TraesCS1B01G193000 chr7B 100.000 49 0 0 204 252 742700506 742700458 1.880000e-14 91.6
40 TraesCS1B01G193000 chr7B 79.545 132 16 5 121 252 665250599 665250479 3.150000e-12 84.2
41 TraesCS1B01G193000 chr3A 88.945 199 16 4 6 202 749871063 749871257 1.770000e-59 241.0
42 TraesCS1B01G193000 chr7A 84.064 251 25 7 208 457 579767413 579767177 1.380000e-55 228.0
43 TraesCS1B01G193000 chr5A 87.356 174 12 7 4741 4913 37968033 37967869 1.810000e-44 191.0
44 TraesCS1B01G193000 chr2A 94.286 105 6 0 4747 4851 36029223 36029119 1.420000e-35 161.0
45 TraesCS1B01G193000 chr4D 90.351 114 8 1 4741 4851 348307351 348307238 3.970000e-31 147.0
46 TraesCS1B01G193000 chr6A 90.090 111 11 0 4741 4851 41340222 41340332 1.430000e-30 145.0
47 TraesCS1B01G193000 chr7D 96.610 59 2 0 4523 4581 293591952 293591894 1.130000e-16 99.0
48 TraesCS1B01G193000 chr6D 96.610 59 2 0 4523 4581 263961488 263961546 1.130000e-16 99.0
49 TraesCS1B01G193000 chr6D 100.000 28 0 0 3348 3375 425902626 425902599 9.000000e-03 52.8
50 TraesCS1B01G193000 chr5D 96.610 59 2 0 4523 4581 563592852 563592910 1.130000e-16 99.0
51 TraesCS1B01G193000 chr2D 96.610 59 2 0 4523 4581 33945836 33945894 1.130000e-16 99.0
52 TraesCS1B01G193000 chr2D 96.610 59 2 0 4523 4581 56188625 56188683 1.130000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G193000 chr1B 346164227 346169143 4916 False 9081.000000 9081 100.000000 1 4917 1 chr1B.!!$F1 4916
1 TraesCS1B01G193000 chr1A 335825782 335831344 5562 False 1363.175000 2710 92.130750 736 4917 4 chr1A.!!$F1 4181
2 TraesCS1B01G193000 chr1D 267380267 267387784 7517 True 1738.333333 2285 91.279333 749 4917 3 chr1D.!!$R1 4168
3 TraesCS1B01G193000 chr6B 198913582 198914084 502 True 601.000000 601 88.431000 236 737 1 chr6B.!!$R1 501
4 TraesCS1B01G193000 chr2B 154243587 154244087 500 False 584.000000 584 87.719000 229 737 1 chr2B.!!$F1 508
5 TraesCS1B01G193000 chr3B 135358726 135359228 502 False 592.000000 592 87.992000 235 737 1 chr3B.!!$F1 502
6 TraesCS1B01G193000 chr3B 662418497 662418998 501 True 573.000000 573 87.426000 236 737 1 chr3B.!!$R3 501
7 TraesCS1B01G193000 chr5B 461577603 461578106 503 True 582.000000 582 87.719000 235 738 1 chr5B.!!$R1 503

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
146 147 0.110192 CTTTTCCGAAAGAGGCACGC 60.110 55.0 0.0 0.0 44.03 5.34 F
1506 1530 0.107508 CGTCCAGGTCCATGAAGCAT 60.108 55.0 0.0 0.0 0.00 3.79 F
2253 2285 0.106918 ACAACTTTGTTCGGGGCAGA 60.107 50.0 0.0 0.0 38.47 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2087 2119 1.933853 CCAGATTTCGAAGCTAACCCG 59.066 52.381 0.00 0.00 0.00 5.28 R
3249 3303 0.321298 GGCCAGGCAAACGAACTCTA 60.321 55.000 15.19 0.00 0.00 2.43 R
4068 4173 0.034756 TGATTATGCGCCGGCTGTAT 59.965 50.000 26.68 23.09 40.82 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 0.932399 AAAACCGAACCGAGAACACG 59.068 50.000 0.00 0.00 0.00 4.49
52 53 1.905637 TTTCCCTTTCCGAAAGAGGC 58.094 50.000 20.43 0.00 41.02 4.70
53 54 0.768622 TTCCCTTTCCGAAAGAGGCA 59.231 50.000 20.43 8.95 41.02 4.75
54 55 0.991920 TCCCTTTCCGAAAGAGGCAT 59.008 50.000 20.43 0.00 41.02 4.40
55 56 1.098050 CCCTTTCCGAAAGAGGCATG 58.902 55.000 20.43 4.41 41.02 4.06
56 57 0.453390 CCTTTCCGAAAGAGGCATGC 59.547 55.000 20.43 9.90 41.02 4.06
57 58 0.453390 CTTTCCGAAAGAGGCATGCC 59.547 55.000 30.12 30.12 41.02 4.40
58 59 0.965363 TTTCCGAAAGAGGCATGCCC 60.965 55.000 33.14 23.29 36.58 5.36
59 60 3.204827 CCGAAAGAGGCATGCCCG 61.205 66.667 33.14 26.38 39.21 6.13
60 61 2.436646 CGAAAGAGGCATGCCCGT 60.437 61.111 33.14 18.07 39.21 5.28
61 62 2.753966 CGAAAGAGGCATGCCCGTG 61.754 63.158 33.14 13.38 39.21 4.94
62 63 3.056313 GAAAGAGGCATGCCCGTGC 62.056 63.158 33.14 19.35 44.31 5.34
63 64 3.574074 AAAGAGGCATGCCCGTGCT 62.574 57.895 33.14 21.25 44.45 4.40
64 65 3.574074 AAGAGGCATGCCCGTGCTT 62.574 57.895 33.14 25.28 44.45 3.91
65 66 3.512516 GAGGCATGCCCGTGCTTC 61.513 66.667 33.14 18.85 44.45 3.86
66 67 3.984193 GAGGCATGCCCGTGCTTCT 62.984 63.158 33.14 12.23 44.85 2.85
67 68 3.818787 GGCATGCCCGTGCTTCTG 61.819 66.667 27.24 0.00 44.45 3.02
68 69 2.747460 GCATGCCCGTGCTTCTGA 60.747 61.111 6.36 0.00 41.82 3.27
69 70 3.044059 GCATGCCCGTGCTTCTGAC 62.044 63.158 6.36 0.00 41.82 3.51
70 71 2.434884 ATGCCCGTGCTTCTGACG 60.435 61.111 0.00 0.00 38.71 4.35
71 72 2.942796 ATGCCCGTGCTTCTGACGA 61.943 57.895 0.00 0.00 39.21 4.20
72 73 2.357034 GCCCGTGCTTCTGACGAA 60.357 61.111 0.00 0.00 39.21 3.85
73 74 1.959226 GCCCGTGCTTCTGACGAAA 60.959 57.895 0.00 0.00 39.21 3.46
74 75 1.298859 GCCCGTGCTTCTGACGAAAT 61.299 55.000 0.00 0.00 39.21 2.17
75 76 2.004583 CCCGTGCTTCTGACGAAATA 57.995 50.000 0.00 0.00 39.21 1.40
76 77 2.343101 CCCGTGCTTCTGACGAAATAA 58.657 47.619 0.00 0.00 39.21 1.40
77 78 2.093783 CCCGTGCTTCTGACGAAATAAC 59.906 50.000 0.00 0.00 39.21 1.89
78 79 2.734606 CCGTGCTTCTGACGAAATAACA 59.265 45.455 0.00 0.00 39.21 2.41
79 80 3.185594 CCGTGCTTCTGACGAAATAACAA 59.814 43.478 0.00 0.00 39.21 2.83
80 81 4.142902 CCGTGCTTCTGACGAAATAACAAT 60.143 41.667 0.00 0.00 39.21 2.71
81 82 5.015733 CGTGCTTCTGACGAAATAACAATC 58.984 41.667 0.00 0.00 39.21 2.67
82 83 5.015733 GTGCTTCTGACGAAATAACAATCG 58.984 41.667 0.00 0.00 44.33 3.34
90 91 4.183539 CGAAATAACAATCGTGCCTCTC 57.816 45.455 0.00 0.00 34.48 3.20
91 92 3.301835 CGAAATAACAATCGTGCCTCTCG 60.302 47.826 0.00 0.00 34.48 4.04
92 93 1.571919 ATAACAATCGTGCCTCTCGC 58.428 50.000 0.00 0.00 38.31 5.03
99 100 2.261671 GTGCCTCTCGCGAAAGGA 59.738 61.111 32.19 14.48 42.08 3.36
100 101 1.374252 GTGCCTCTCGCGAAAGGAA 60.374 57.895 32.19 20.39 42.08 3.36
101 102 0.949105 GTGCCTCTCGCGAAAGGAAA 60.949 55.000 32.19 16.10 42.08 3.13
102 103 0.250124 TGCCTCTCGCGAAAGGAAAA 60.250 50.000 32.19 13.45 42.08 2.29
103 104 0.872388 GCCTCTCGCGAAAGGAAAAA 59.128 50.000 32.19 0.00 34.35 1.94
142 143 4.316205 TTTTTCCTTTTCCGAAAGAGGC 57.684 40.909 13.25 0.00 44.03 4.70
143 144 2.649531 TTCCTTTTCCGAAAGAGGCA 57.350 45.000 13.25 4.71 44.03 4.75
144 145 1.892209 TCCTTTTCCGAAAGAGGCAC 58.108 50.000 13.25 0.00 44.03 5.01
145 146 0.517316 CCTTTTCCGAAAGAGGCACG 59.483 55.000 8.33 0.00 44.03 5.34
146 147 0.110192 CTTTTCCGAAAGAGGCACGC 60.110 55.000 0.00 0.00 44.03 5.34
147 148 1.512156 TTTTCCGAAAGAGGCACGCC 61.512 55.000 0.00 0.00 0.00 5.68
148 149 3.894547 TTCCGAAAGAGGCACGCCC 62.895 63.158 3.95 0.00 36.58 6.13
199 200 2.050442 CGGAAGCAAAACCGTGCC 60.050 61.111 0.00 0.00 46.14 5.01
200 201 2.551912 CGGAAGCAAAACCGTGCCT 61.552 57.895 0.00 0.00 46.14 4.75
201 202 1.285950 GGAAGCAAAACCGTGCCTC 59.714 57.895 0.00 0.00 46.14 4.70
202 203 1.452145 GGAAGCAAAACCGTGCCTCA 61.452 55.000 0.00 0.00 46.14 3.86
203 204 0.317854 GAAGCAAAACCGTGCCTCAC 60.318 55.000 0.00 0.00 46.14 3.51
232 233 1.508632 TCTTTTCCGAAAGAGGCACG 58.491 50.000 0.00 0.00 44.73 5.34
233 234 0.110192 CTTTTCCGAAAGAGGCACGC 60.110 55.000 0.00 0.00 44.03 5.34
365 368 0.440371 GTGCCTCTCGCGAAAGAAAG 59.560 55.000 11.91 3.23 42.08 2.62
534 543 5.231147 TGAAAGAAAAATTGGTCGAAAAGCG 59.769 36.000 0.00 0.00 42.69 4.68
549 558 2.825861 AAGCGAGAAAAGACCGGTAA 57.174 45.000 7.34 0.00 33.48 2.85
601 613 6.889019 AAATCGTTTAAAAAGCCGAAAACA 57.111 29.167 3.20 0.00 32.61 2.83
653 665 3.127533 GAGCGCCCAAAGCACGAT 61.128 61.111 2.29 0.00 44.04 3.73
724 736 3.984241 CGAAGGAGCGCTCGTTAG 58.016 61.111 36.96 32.96 37.75 2.34
738 750 3.679083 GCTCGTTAGTTAGTTGCTCCCAT 60.679 47.826 0.00 0.00 0.00 4.00
739 751 4.504858 CTCGTTAGTTAGTTGCTCCCATT 58.495 43.478 0.00 0.00 0.00 3.16
740 752 4.901868 TCGTTAGTTAGTTGCTCCCATTT 58.098 39.130 0.00 0.00 0.00 2.32
741 753 6.040209 TCGTTAGTTAGTTGCTCCCATTTA 57.960 37.500 0.00 0.00 0.00 1.40
742 754 6.646267 TCGTTAGTTAGTTGCTCCCATTTAT 58.354 36.000 0.00 0.00 0.00 1.40
785 797 4.056125 GGCTTTCTTGGGCCGTGC 62.056 66.667 0.00 0.00 38.91 5.34
786 798 3.294493 GCTTTCTTGGGCCGTGCA 61.294 61.111 0.00 0.00 0.00 4.57
787 799 2.956987 CTTTCTTGGGCCGTGCAG 59.043 61.111 0.00 0.00 0.00 4.41
788 800 3.273080 CTTTCTTGGGCCGTGCAGC 62.273 63.158 0.00 0.00 0.00 5.25
789 801 3.790416 TTTCTTGGGCCGTGCAGCT 62.790 57.895 0.00 0.00 0.00 4.24
790 802 2.404566 TTTCTTGGGCCGTGCAGCTA 62.405 55.000 0.00 0.00 0.00 3.32
802 814 1.227292 GCAGCTAAGGTACGGAGCC 60.227 63.158 8.25 0.00 40.91 4.70
803 815 1.956629 GCAGCTAAGGTACGGAGCCA 61.957 60.000 8.25 0.00 40.91 4.75
902 915 1.801178 GTTTCTCGGTTCTCAAGCCTG 59.199 52.381 0.00 0.00 0.00 4.85
906 919 0.541998 TCGGTTCTCAAGCCTGGAGA 60.542 55.000 0.00 0.00 39.53 3.71
910 923 1.620819 GTTCTCAAGCCTGGAGACTCA 59.379 52.381 0.00 0.00 40.90 3.41
912 925 1.898472 TCTCAAGCCTGGAGACTCAAG 59.102 52.381 4.53 1.77 36.52 3.02
965 978 3.624900 CGTACTCGTCAGAACAACAGAA 58.375 45.455 0.00 0.00 0.00 3.02
966 979 3.664486 CGTACTCGTCAGAACAACAGAAG 59.336 47.826 0.00 0.00 0.00 2.85
1049 1073 3.823330 GCAGCCTGCAGCCATGAC 61.823 66.667 12.82 0.00 44.26 3.06
1287 1311 2.952245 CAGCACAAGCAGCAGACC 59.048 61.111 0.00 0.00 45.49 3.85
1506 1530 0.107508 CGTCCAGGTCCATGAAGCAT 60.108 55.000 0.00 0.00 0.00 3.79
1510 1534 1.064906 CCAGGTCCATGAAGCATCACT 60.065 52.381 0.00 0.00 38.69 3.41
1552 1576 1.030488 GGACATCGTCGAGGAGTCCA 61.030 60.000 30.50 8.34 46.15 4.02
1673 1697 4.253257 GACTAGCGGCGAGACGGG 62.253 72.222 17.16 0.00 0.00 5.28
1924 1951 1.041447 CAGGTAATCCTCGTCCCGGT 61.041 60.000 0.00 0.00 43.07 5.28
2027 2059 4.593597 TTAGAAACGCGAAATGATGTCC 57.406 40.909 15.93 0.00 0.00 4.02
2087 2119 3.367025 CGTCGTTTGTTGATCTAGGTTCC 59.633 47.826 0.00 0.00 0.00 3.62
2089 2121 2.671396 CGTTTGTTGATCTAGGTTCCGG 59.329 50.000 0.00 0.00 0.00 5.14
2093 2125 3.443052 TGTTGATCTAGGTTCCGGGTTA 58.557 45.455 0.00 0.00 0.00 2.85
2098 2130 2.105766 TCTAGGTTCCGGGTTAGCTTC 58.894 52.381 0.00 0.00 0.00 3.86
2116 2148 8.612619 GTTAGCTTCGAAATCTGGATTGATTTA 58.387 33.333 0.00 0.00 43.97 1.40
2132 2164 6.662865 TTGATTTAAAATGCAGAACTCCCA 57.337 33.333 0.00 0.00 0.00 4.37
2176 2208 4.630894 TTTGACGCTGAAATTTCACACT 57.369 36.364 16.91 1.90 32.90 3.55
2178 2210 2.942376 TGACGCTGAAATTTCACACTGT 59.058 40.909 16.91 12.06 32.90 3.55
2181 2213 4.743493 ACGCTGAAATTTCACACTGTTTT 58.257 34.783 16.91 0.00 32.90 2.43
2186 2218 6.142818 TGAAATTTCACACTGTTTTCCGAT 57.857 33.333 16.91 0.00 31.01 4.18
2251 2283 4.668151 ACAACTTTGTTCGGGGCA 57.332 50.000 0.00 0.00 38.47 5.36
2252 2284 2.414750 ACAACTTTGTTCGGGGCAG 58.585 52.632 0.00 0.00 38.47 4.85
2253 2285 0.106918 ACAACTTTGTTCGGGGCAGA 60.107 50.000 0.00 0.00 38.47 4.26
2255 2287 2.224670 ACAACTTTGTTCGGGGCAGATA 60.225 45.455 0.00 0.00 38.47 1.98
2256 2288 2.109425 ACTTTGTTCGGGGCAGATAC 57.891 50.000 0.00 0.00 0.00 2.24
2280 2313 6.183360 ACCAGATTTGAATTTTCAGTTCACGT 60.183 34.615 0.00 0.00 38.61 4.49
2538 2574 4.275936 ACTGTGCCACATTTCTTCAGTTAC 59.724 41.667 0.00 0.00 31.95 2.50
2545 2581 5.765182 CCACATTTCTTCAGTTACCTCTGTT 59.235 40.000 0.00 0.00 36.85 3.16
2548 2584 6.828785 ACATTTCTTCAGTTACCTCTGTTTGT 59.171 34.615 0.00 0.00 36.85 2.83
2557 2593 3.477210 ACCTCTGTTTGTCCTCTGTTC 57.523 47.619 0.00 0.00 0.00 3.18
2558 2594 2.771943 ACCTCTGTTTGTCCTCTGTTCA 59.228 45.455 0.00 0.00 0.00 3.18
2559 2595 3.134458 CCTCTGTTTGTCCTCTGTTCAC 58.866 50.000 0.00 0.00 0.00 3.18
2560 2596 3.432186 CCTCTGTTTGTCCTCTGTTCACA 60.432 47.826 0.00 0.00 0.00 3.58
2619 2655 4.036518 GGATGGATAGGATGCTGGTCTAT 58.963 47.826 0.00 0.00 0.00 1.98
2643 2679 5.185249 TGAGTACATGGAGAACAGTAACCTC 59.815 44.000 0.00 0.00 0.00 3.85
2721 2757 3.430929 GGATGCACATACTTCTCGGAACT 60.431 47.826 0.00 0.00 0.00 3.01
2734 2770 1.203052 TCGGAACTGCTAAAGGGTACG 59.797 52.381 0.00 0.00 0.00 3.67
2736 2772 1.366679 GAACTGCTAAAGGGTACGGC 58.633 55.000 0.00 0.00 0.00 5.68
2746 2782 2.871096 AGGGTACGGCAATTCTTCAA 57.129 45.000 0.00 0.00 0.00 2.69
2825 2876 7.446013 CGATTAGGAGTAGAGAAGAAGTATGGT 59.554 40.741 0.00 0.00 0.00 3.55
2830 2881 8.725256 AGGAGTAGAGAAGAAGTATGGTATGTA 58.275 37.037 0.00 0.00 0.00 2.29
3026 3080 3.825014 AGCAAGAACTGATGTGCATCTTT 59.175 39.130 12.64 6.54 39.50 2.52
3031 3085 4.702131 AGAACTGATGTGCATCTTTTACCC 59.298 41.667 12.64 0.00 38.60 3.69
3042 3096 4.324267 CATCTTTTACCCGAACTTCAGGT 58.676 43.478 2.21 2.21 37.69 4.00
3110 3164 2.489329 CGTCAAATCCAGCAACATCCTT 59.511 45.455 0.00 0.00 0.00 3.36
3143 3197 3.310860 GAACGCCAGGGTGTCGGAT 62.311 63.158 4.78 0.00 37.94 4.18
3238 3292 6.881065 TCAGTCTCTCAACTAAATTTCCATGG 59.119 38.462 4.97 4.97 0.00 3.66
3246 3300 4.337145 ACTAAATTTCCATGGCACCGTTA 58.663 39.130 6.96 1.05 0.00 3.18
3247 3301 3.586100 AAATTTCCATGGCACCGTTAC 57.414 42.857 6.96 0.00 0.00 2.50
3248 3302 1.091537 ATTTCCATGGCACCGTTACG 58.908 50.000 6.96 0.00 0.00 3.18
3249 3303 0.250381 TTTCCATGGCACCGTTACGT 60.250 50.000 6.96 0.00 0.00 3.57
3250 3304 0.607112 TTCCATGGCACCGTTACGTA 59.393 50.000 6.96 0.00 0.00 3.57
3251 3305 0.173935 TCCATGGCACCGTTACGTAG 59.826 55.000 6.96 0.00 0.00 3.51
3252 3306 0.173935 CCATGGCACCGTTACGTAGA 59.826 55.000 0.00 0.00 0.00 2.59
3253 3307 1.556564 CATGGCACCGTTACGTAGAG 58.443 55.000 3.52 0.00 0.00 2.43
3254 3308 1.135199 CATGGCACCGTTACGTAGAGT 60.135 52.381 3.52 0.00 0.00 3.24
3255 3309 0.961019 TGGCACCGTTACGTAGAGTT 59.039 50.000 3.52 0.00 0.00 3.01
3256 3310 1.068333 TGGCACCGTTACGTAGAGTTC 60.068 52.381 3.52 0.00 0.00 3.01
3257 3311 1.253999 GCACCGTTACGTAGAGTTCG 58.746 55.000 3.52 0.00 0.00 3.95
3261 3315 3.118482 CACCGTTACGTAGAGTTCGTTTG 59.882 47.826 3.52 0.00 41.72 2.93
3286 3340 1.297893 CGCAGCTTAGCAATTCGCC 60.298 57.895 7.07 0.00 44.04 5.54
3288 3342 0.248377 GCAGCTTAGCAATTCGCCTG 60.248 55.000 7.07 0.00 44.04 4.85
3289 3343 0.379669 CAGCTTAGCAATTCGCCTGG 59.620 55.000 7.07 0.00 44.04 4.45
3290 3344 0.035056 AGCTTAGCAATTCGCCTGGT 60.035 50.000 7.07 0.00 44.04 4.00
3291 3345 0.378610 GCTTAGCAATTCGCCTGGTC 59.621 55.000 0.00 0.00 44.04 4.02
3292 3346 0.652592 CTTAGCAATTCGCCTGGTCG 59.347 55.000 0.00 0.00 44.04 4.79
3293 3347 1.366111 TTAGCAATTCGCCTGGTCGC 61.366 55.000 5.78 0.00 44.04 5.19
3418 3472 1.825474 CAGAACTCCGGTGGACTACAT 59.175 52.381 8.63 0.00 0.00 2.29
3468 3525 2.712466 CGCCGTCGTTTTCTTTCTTTTC 59.288 45.455 0.00 0.00 0.00 2.29
3516 3573 1.547820 CTGCCAGTGCACTCTTCTCTA 59.452 52.381 18.64 0.00 44.23 2.43
3789 3878 1.201181 GTTGCCATACACCGCATTGAA 59.799 47.619 0.00 0.00 34.35 2.69
3795 3884 1.598882 TACACCGCATTGAACTGCAA 58.401 45.000 0.00 0.00 42.40 4.08
3798 3887 0.311790 ACCGCATTGAACTGCAACTG 59.688 50.000 0.00 0.00 42.40 3.16
3799 3888 0.311790 CCGCATTGAACTGCAACTGT 59.688 50.000 0.00 0.00 42.40 3.55
3800 3889 1.401530 CGCATTGAACTGCAACTGTG 58.598 50.000 0.00 0.00 42.40 3.66
3801 3890 1.268692 CGCATTGAACTGCAACTGTGT 60.269 47.619 0.00 0.00 42.40 3.72
3802 3891 2.795681 CGCATTGAACTGCAACTGTGTT 60.796 45.455 0.00 0.00 42.40 3.32
3804 3893 3.618150 GCATTGAACTGCAACTGTGTTTT 59.382 39.130 0.00 0.00 41.87 2.43
3806 3895 5.552807 CATTGAACTGCAACTGTGTTTTTG 58.447 37.500 0.00 0.00 39.78 2.44
3807 3896 3.583806 TGAACTGCAACTGTGTTTTTGG 58.416 40.909 0.00 0.00 0.00 3.28
3808 3897 3.006323 TGAACTGCAACTGTGTTTTTGGT 59.994 39.130 0.00 0.00 0.00 3.67
3811 3900 2.923020 CTGCAACTGTGTTTTTGGTGTC 59.077 45.455 0.00 0.00 0.00 3.67
3812 3901 1.917303 GCAACTGTGTTTTTGGTGTCG 59.083 47.619 0.00 0.00 0.00 4.35
3813 3902 2.669950 GCAACTGTGTTTTTGGTGTCGT 60.670 45.455 0.00 0.00 0.00 4.34
3814 3903 3.168193 CAACTGTGTTTTTGGTGTCGTC 58.832 45.455 0.00 0.00 0.00 4.20
3816 3905 2.814919 ACTGTGTTTTTGGTGTCGTCAA 59.185 40.909 0.00 0.00 0.00 3.18
3817 3906 3.253677 ACTGTGTTTTTGGTGTCGTCAAA 59.746 39.130 0.00 0.00 32.96 2.69
3819 3908 2.918600 GTGTTTTTGGTGTCGTCAAACC 59.081 45.455 0.00 0.00 34.34 3.27
3820 3909 2.178783 GTTTTTGGTGTCGTCAAACCG 58.821 47.619 0.00 0.00 39.47 4.44
3821 3910 1.451067 TTTTGGTGTCGTCAAACCGT 58.549 45.000 0.00 0.00 39.47 4.83
3822 3911 1.451067 TTTGGTGTCGTCAAACCGTT 58.549 45.000 0.00 0.00 39.47 4.44
3825 3914 1.130749 TGGTGTCGTCAAACCGTTTTG 59.869 47.619 0.00 0.00 43.17 2.44
3826 3915 1.185189 GTGTCGTCAAACCGTTTTGC 58.815 50.000 0.00 0.00 41.78 3.68
3827 3916 1.088306 TGTCGTCAAACCGTTTTGCT 58.912 45.000 0.00 0.00 41.78 3.91
3828 3917 1.202087 TGTCGTCAAACCGTTTTGCTG 60.202 47.619 0.00 0.00 41.78 4.41
3829 3918 0.248296 TCGTCAAACCGTTTTGCTGC 60.248 50.000 0.00 0.00 41.78 5.25
3830 3919 0.248458 CGTCAAACCGTTTTGCTGCT 60.248 50.000 0.00 0.00 41.78 4.24
3832 3921 0.383949 TCAAACCGTTTTGCTGCTCC 59.616 50.000 0.00 0.00 41.78 4.70
3929 4031 0.605319 GGAGTGAACGCCATGGACAA 60.605 55.000 18.40 0.00 35.76 3.18
4002 4107 2.427453 ACAACAAGCTAGTCGATCGGAT 59.573 45.455 16.41 6.75 0.00 4.18
4040 4145 4.172505 GTTGTGTTTGTTTGCATGACAGA 58.827 39.130 0.00 0.00 0.00 3.41
4041 4146 3.768406 TGTGTTTGTTTGCATGACAGAC 58.232 40.909 13.99 13.99 33.95 3.51
4042 4147 3.192212 TGTGTTTGTTTGCATGACAGACA 59.808 39.130 17.59 17.59 41.33 3.41
4043 4148 3.792956 GTGTTTGTTTGCATGACAGACAG 59.207 43.478 20.34 0.00 43.58 3.51
4064 4169 3.570975 AGCAATGACTCAATCAAACAGCA 59.429 39.130 0.00 0.00 41.93 4.41
4065 4170 3.918591 GCAATGACTCAATCAAACAGCAG 59.081 43.478 0.00 0.00 41.93 4.24
4066 4171 4.482386 CAATGACTCAATCAAACAGCAGG 58.518 43.478 0.00 0.00 41.93 4.85
4067 4172 1.881973 TGACTCAATCAAACAGCAGGC 59.118 47.619 0.00 0.00 33.02 4.85
4068 4173 1.881973 GACTCAATCAAACAGCAGGCA 59.118 47.619 0.00 0.00 0.00 4.75
4069 4174 2.490903 GACTCAATCAAACAGCAGGCAT 59.509 45.455 0.00 0.00 0.00 4.40
4070 4175 3.689347 ACTCAATCAAACAGCAGGCATA 58.311 40.909 0.00 0.00 0.00 3.14
4071 4176 3.441572 ACTCAATCAAACAGCAGGCATAC 59.558 43.478 0.00 0.00 0.00 2.39
4072 4177 3.419943 TCAATCAAACAGCAGGCATACA 58.580 40.909 0.00 0.00 0.00 2.29
4073 4178 3.441222 TCAATCAAACAGCAGGCATACAG 59.559 43.478 0.00 0.00 0.00 2.74
4074 4179 1.167851 TCAAACAGCAGGCATACAGC 58.832 50.000 0.00 0.00 44.65 4.40
4097 4202 1.196354 GCGCATAATCAAGGCTAGCAG 59.804 52.381 18.24 5.87 0.00 4.24
4146 4251 8.738199 TTTATATGATCGACATAACGGAAGTC 57.262 34.615 10.39 0.00 43.47 3.01
4162 4267 1.067582 GTCCGTCTATGCTTCCCCG 59.932 63.158 0.00 0.00 0.00 5.73
4164 4269 2.280186 CGTCTATGCTTCCCCGGC 60.280 66.667 0.00 0.00 0.00 6.13
4190 4295 3.391296 ACCTGTGTCACTTTGGTGTCTAT 59.609 43.478 12.69 0.00 43.41 1.98
4209 4318 6.544197 TGTCTATGGTTTGCTTTAGTTGTTGA 59.456 34.615 0.00 0.00 0.00 3.18
4213 4322 9.260002 CTATGGTTTGCTTTAGTTGTTGAATTT 57.740 29.630 0.00 0.00 0.00 1.82
4214 4323 7.532682 TGGTTTGCTTTAGTTGTTGAATTTC 57.467 32.000 0.00 0.00 0.00 2.17
4216 4325 6.292114 GGTTTGCTTTAGTTGTTGAATTTCGG 60.292 38.462 0.00 0.00 0.00 4.30
4218 4327 5.897050 TGCTTTAGTTGTTGAATTTCGGTT 58.103 33.333 0.00 0.00 0.00 4.44
4219 4328 5.746245 TGCTTTAGTTGTTGAATTTCGGTTG 59.254 36.000 0.00 0.00 0.00 3.77
4220 4329 5.332280 GCTTTAGTTGTTGAATTTCGGTTGC 60.332 40.000 0.00 0.00 0.00 4.17
4221 4330 3.092334 AGTTGTTGAATTTCGGTTGCC 57.908 42.857 0.00 0.00 0.00 4.52
4222 4331 2.428890 AGTTGTTGAATTTCGGTTGCCA 59.571 40.909 0.00 0.00 0.00 4.92
4223 4332 3.069443 AGTTGTTGAATTTCGGTTGCCAT 59.931 39.130 0.00 0.00 0.00 4.40
4227 4356 4.279671 TGTTGAATTTCGGTTGCCATAAGT 59.720 37.500 0.00 0.00 0.00 2.24
4234 4363 1.727857 CGGTTGCCATAAGTTTGCGTC 60.728 52.381 0.00 0.00 0.00 5.19
4241 4370 1.069568 CATAAGTTTGCGTCGTTGCCA 60.070 47.619 0.00 0.00 0.00 4.92
4244 4373 1.792057 GTTTGCGTCGTTGCCATCG 60.792 57.895 0.00 0.00 0.00 3.84
4247 4376 3.788766 GCGTCGTTGCCATCGCTT 61.789 61.111 0.00 0.00 44.28 4.68
4249 4378 1.962092 GCGTCGTTGCCATCGCTTAA 61.962 55.000 0.00 0.00 44.28 1.85
4250 4379 0.247145 CGTCGTTGCCATCGCTTAAC 60.247 55.000 0.00 0.00 35.36 2.01
4251 4380 1.076332 GTCGTTGCCATCGCTTAACT 58.924 50.000 0.00 0.00 35.36 2.24
4252 4381 1.463444 GTCGTTGCCATCGCTTAACTT 59.537 47.619 0.00 0.00 35.36 2.66
4270 4417 2.819608 ACTTAAGTTCAGCCCGTACGTA 59.180 45.455 15.21 0.00 0.00 3.57
4281 4428 3.498840 CGTACGTACGGTAGCACTC 57.501 57.895 34.54 1.44 45.30 3.51
4312 4486 1.743772 GCAGGGCGCAAGAAAGAGATA 60.744 52.381 10.83 0.00 41.79 1.98
4313 4487 2.843701 CAGGGCGCAAGAAAGAGATAT 58.156 47.619 10.83 0.00 43.02 1.63
4314 4488 3.209410 CAGGGCGCAAGAAAGAGATATT 58.791 45.455 10.83 0.00 43.02 1.28
4316 4490 3.879892 AGGGCGCAAGAAAGAGATATTTC 59.120 43.478 10.83 0.00 39.09 2.17
4328 8049 1.421646 AGATATTTCTTCTGGGGCCGG 59.578 52.381 0.00 0.00 0.00 6.13
4330 8051 2.279037 TATTTCTTCTGGGGCCGGCC 62.279 60.000 38.57 38.57 0.00 6.13
4412 8133 2.228822 GCCCATGGCGATAAGGTTATTG 59.771 50.000 6.09 0.00 39.62 1.90
4420 8141 3.713288 CGATAAGGTTATTGCCACGAGA 58.287 45.455 0.00 0.00 0.00 4.04
4421 8142 3.736252 CGATAAGGTTATTGCCACGAGAG 59.264 47.826 0.00 0.00 0.00 3.20
4506 8231 3.791586 GCTCTCCAGCCCCCTCAC 61.792 72.222 0.00 0.00 40.14 3.51
4507 8232 3.086600 CTCTCCAGCCCCCTCACC 61.087 72.222 0.00 0.00 0.00 4.02
4508 8233 4.741239 TCTCCAGCCCCCTCACCC 62.741 72.222 0.00 0.00 0.00 4.61
4517 8242 3.189646 CCCTCACCCCACCCCAAA 61.190 66.667 0.00 0.00 0.00 3.28
4518 8243 2.784654 CCCTCACCCCACCCCAAAA 61.785 63.158 0.00 0.00 0.00 2.44
4519 8244 1.234529 CCTCACCCCACCCCAAAAA 59.765 57.895 0.00 0.00 0.00 1.94
4520 8245 1.118965 CCTCACCCCACCCCAAAAAC 61.119 60.000 0.00 0.00 0.00 2.43
4521 8246 1.075151 TCACCCCACCCCAAAAACC 60.075 57.895 0.00 0.00 0.00 3.27
4527 8252 1.655372 CCACCCCAAAAACCCATCAT 58.345 50.000 0.00 0.00 0.00 2.45
4529 8254 1.554617 CACCCCAAAAACCCATCATCC 59.445 52.381 0.00 0.00 0.00 3.51
4531 8256 2.225856 ACCCCAAAAACCCATCATCCAT 60.226 45.455 0.00 0.00 0.00 3.41
4544 8269 4.758251 TCCATGGACGCACAGCCG 62.758 66.667 11.44 0.00 0.00 5.52
4563 8288 2.125106 GCCACCACGTCCATCCTC 60.125 66.667 0.00 0.00 0.00 3.71
4566 8291 1.139734 CACCACGTCCATCCTCTCG 59.860 63.158 0.00 0.00 0.00 4.04
4567 8292 2.052690 ACCACGTCCATCCTCTCGG 61.053 63.158 0.00 0.00 0.00 4.63
4573 8298 2.060383 TCCATCCTCTCGGCACCTG 61.060 63.158 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.932399 CGTGTTCTCGGTTCGGTTTT 59.068 50.000 0.00 0.00 0.00 2.43
8 9 0.877213 CCGTGTTCTCGGTTCGGTTT 60.877 55.000 5.33 0.00 44.77 3.27
9 10 1.300388 CCGTGTTCTCGGTTCGGTT 60.300 57.895 5.33 0.00 44.77 4.44
10 11 2.337532 CCGTGTTCTCGGTTCGGT 59.662 61.111 5.33 0.00 44.77 4.69
31 32 2.626266 GCCTCTTTCGGAAAGGGAAAAA 59.374 45.455 27.71 9.07 41.66 1.94
32 33 2.235891 GCCTCTTTCGGAAAGGGAAAA 58.764 47.619 27.71 9.72 41.66 2.29
33 34 1.144093 TGCCTCTTTCGGAAAGGGAAA 59.856 47.619 27.71 14.52 41.66 3.13
34 35 0.768622 TGCCTCTTTCGGAAAGGGAA 59.231 50.000 27.71 19.29 41.66 3.97
35 36 0.991920 ATGCCTCTTTCGGAAAGGGA 59.008 50.000 27.71 16.81 41.66 4.20
36 37 1.098050 CATGCCTCTTTCGGAAAGGG 58.902 55.000 25.66 23.41 38.75 3.95
37 38 0.453390 GCATGCCTCTTTCGGAAAGG 59.547 55.000 25.66 15.57 39.01 3.11
38 39 0.453390 GGCATGCCTCTTTCGGAAAG 59.547 55.000 29.98 21.64 39.88 2.62
39 40 0.965363 GGGCATGCCTCTTTCGGAAA 60.965 55.000 34.70 2.78 36.10 3.13
40 41 1.378514 GGGCATGCCTCTTTCGGAA 60.379 57.895 34.70 0.00 36.10 4.30
41 42 2.272146 GGGCATGCCTCTTTCGGA 59.728 61.111 34.70 0.00 36.10 4.55
42 43 3.204827 CGGGCATGCCTCTTTCGG 61.205 66.667 34.70 12.45 36.10 4.30
43 44 2.436646 ACGGGCATGCCTCTTTCG 60.437 61.111 34.70 29.22 36.10 3.46
44 45 3.056313 GCACGGGCATGCCTCTTTC 62.056 63.158 34.70 17.62 39.86 2.62
45 46 3.064324 GCACGGGCATGCCTCTTT 61.064 61.111 34.70 14.67 39.86 2.52
51 52 2.747460 TCAGAAGCACGGGCATGC 60.747 61.111 14.57 9.90 46.50 4.06
52 53 2.743752 CGTCAGAAGCACGGGCATG 61.744 63.158 14.57 7.95 44.61 4.06
53 54 2.434884 CGTCAGAAGCACGGGCAT 60.435 61.111 14.57 0.00 44.61 4.40
54 55 2.652382 TTTCGTCAGAAGCACGGGCA 62.652 55.000 14.57 0.00 44.61 5.36
55 56 1.298859 ATTTCGTCAGAAGCACGGGC 61.299 55.000 0.00 0.00 37.70 6.13
56 57 2.004583 TATTTCGTCAGAAGCACGGG 57.995 50.000 0.00 0.00 37.70 5.28
57 58 2.734606 TGTTATTTCGTCAGAAGCACGG 59.265 45.455 0.00 0.00 37.70 4.94
58 59 4.383774 TTGTTATTTCGTCAGAAGCACG 57.616 40.909 0.00 0.00 37.70 5.34
59 60 5.015733 CGATTGTTATTTCGTCAGAAGCAC 58.984 41.667 0.00 0.00 37.70 4.40
60 61 4.688879 ACGATTGTTATTTCGTCAGAAGCA 59.311 37.500 0.00 0.00 44.72 3.91
61 62 5.015733 CACGATTGTTATTTCGTCAGAAGC 58.984 41.667 0.00 0.00 46.06 3.86
62 63 5.015733 GCACGATTGTTATTTCGTCAGAAG 58.984 41.667 0.00 0.00 46.06 2.85
63 64 4.142988 GGCACGATTGTTATTTCGTCAGAA 60.143 41.667 0.00 0.00 46.06 3.02
64 65 3.369756 GGCACGATTGTTATTTCGTCAGA 59.630 43.478 0.00 0.00 46.06 3.27
65 66 3.370978 AGGCACGATTGTTATTTCGTCAG 59.629 43.478 0.00 0.00 46.06 3.51
66 67 3.331150 AGGCACGATTGTTATTTCGTCA 58.669 40.909 0.00 0.00 46.06 4.35
67 68 3.617263 AGAGGCACGATTGTTATTTCGTC 59.383 43.478 0.00 0.00 46.06 4.20
69 70 3.301835 CGAGAGGCACGATTGTTATTTCG 60.302 47.826 0.00 0.00 41.04 3.46
70 71 3.544244 GCGAGAGGCACGATTGTTATTTC 60.544 47.826 0.00 0.00 42.87 2.17
71 72 2.351726 GCGAGAGGCACGATTGTTATTT 59.648 45.455 0.00 0.00 42.87 1.40
72 73 1.933853 GCGAGAGGCACGATTGTTATT 59.066 47.619 0.00 0.00 42.87 1.40
73 74 1.571919 GCGAGAGGCACGATTGTTAT 58.428 50.000 0.00 0.00 42.87 1.89
74 75 0.800683 CGCGAGAGGCACGATTGTTA 60.801 55.000 0.00 0.00 43.84 2.41
75 76 2.094659 CGCGAGAGGCACGATTGTT 61.095 57.895 0.00 0.00 43.84 2.83
76 77 2.486636 TTCGCGAGAGGCACGATTGT 62.487 55.000 9.59 0.00 43.84 2.71
77 78 1.351430 TTTCGCGAGAGGCACGATTG 61.351 55.000 9.59 0.00 43.84 2.67
78 79 1.078759 CTTTCGCGAGAGGCACGATT 61.079 55.000 18.35 0.00 43.84 3.34
79 80 1.517257 CTTTCGCGAGAGGCACGAT 60.517 57.895 18.35 0.00 43.84 3.73
80 81 2.126463 CTTTCGCGAGAGGCACGA 60.126 61.111 18.35 0.00 43.84 4.35
81 82 3.181967 CCTTTCGCGAGAGGCACG 61.182 66.667 30.06 9.30 43.84 5.34
82 83 0.949105 TTTCCTTTCGCGAGAGGCAC 60.949 55.000 34.45 0.00 43.84 5.01
83 84 0.250124 TTTTCCTTTCGCGAGAGGCA 60.250 50.000 34.45 25.17 43.84 4.75
84 85 0.872388 TTTTTCCTTTCGCGAGAGGC 59.128 50.000 34.45 0.00 43.69 4.70
121 122 3.702045 TGCCTCTTTCGGAAAAGGAAAAA 59.298 39.130 23.79 11.03 41.88 1.94
122 123 3.067601 GTGCCTCTTTCGGAAAAGGAAAA 59.932 43.478 23.79 12.60 41.88 2.29
123 124 2.621526 GTGCCTCTTTCGGAAAAGGAAA 59.378 45.455 23.79 14.19 41.88 3.13
124 125 2.227194 GTGCCTCTTTCGGAAAAGGAA 58.773 47.619 23.79 16.44 41.88 3.36
125 126 1.876416 CGTGCCTCTTTCGGAAAAGGA 60.876 52.381 23.79 11.81 41.88 3.36
126 127 0.517316 CGTGCCTCTTTCGGAAAAGG 59.483 55.000 19.02 19.02 41.88 3.11
127 128 0.110192 GCGTGCCTCTTTCGGAAAAG 60.110 55.000 4.53 5.42 42.77 2.27
128 129 1.512156 GGCGTGCCTCTTTCGGAAAA 61.512 55.000 2.98 0.00 0.00 2.29
129 130 1.964373 GGCGTGCCTCTTTCGGAAA 60.964 57.895 2.98 2.78 0.00 3.13
130 131 2.358247 GGCGTGCCTCTTTCGGAA 60.358 61.111 2.98 0.00 0.00 4.30
131 132 4.388499 GGGCGTGCCTCTTTCGGA 62.388 66.667 11.25 0.00 36.10 4.55
134 135 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
146 147 4.735132 TTTCGCGAGAGGCACGGG 62.735 66.667 9.59 0.00 43.84 5.28
147 148 3.181967 CTTTCGCGAGAGGCACGG 61.182 66.667 18.35 0.00 43.84 4.94
148 149 3.843240 GCTTTCGCGAGAGGCACG 61.843 66.667 25.84 3.72 43.84 5.34
149 150 2.738521 TGCTTTCGCGAGAGGCAC 60.739 61.111 25.84 11.56 42.51 5.01
150 151 2.738521 GTGCTTTCGCGAGAGGCA 60.739 61.111 25.84 23.78 44.13 4.75
151 152 1.841663 TTTGTGCTTTCGCGAGAGGC 61.842 55.000 25.84 21.76 43.69 4.70
152 153 0.110644 GTTTGTGCTTTCGCGAGAGG 60.111 55.000 25.84 13.55 43.69 3.69
153 154 0.449507 CGTTTGTGCTTTCGCGAGAG 60.450 55.000 21.42 21.42 43.69 3.20
154 155 1.149361 ACGTTTGTGCTTTCGCGAGA 61.149 50.000 9.59 3.35 39.65 4.04
155 156 0.986874 CACGTTTGTGCTTTCGCGAG 60.987 55.000 9.59 0.00 39.67 5.03
156 157 1.011684 CACGTTTGTGCTTTCGCGA 60.012 52.632 3.71 3.71 39.67 5.87
157 158 3.498726 CACGTTTGTGCTTTCGCG 58.501 55.556 0.00 0.00 39.67 5.87
174 175 2.855514 TTTTGCTTCCGCCACAGGC 61.856 57.895 0.00 0.00 46.75 4.85
175 176 1.007387 GTTTTGCTTCCGCCACAGG 60.007 57.895 0.00 0.00 34.43 4.00
176 177 1.007387 GGTTTTGCTTCCGCCACAG 60.007 57.895 0.00 0.00 34.43 3.66
177 178 2.840066 CGGTTTTGCTTCCGCCACA 61.840 57.895 0.00 0.00 40.28 4.17
178 179 2.050442 CGGTTTTGCTTCCGCCAC 60.050 61.111 0.00 0.00 40.28 5.01
183 184 1.285950 GAGGCACGGTTTTGCTTCC 59.714 57.895 0.00 0.00 41.54 3.46
184 185 0.317854 GTGAGGCACGGTTTTGCTTC 60.318 55.000 1.50 1.50 46.18 3.86
185 186 1.733526 GTGAGGCACGGTTTTGCTT 59.266 52.632 0.00 0.00 42.56 3.91
186 187 3.432186 GTGAGGCACGGTTTTGCT 58.568 55.556 0.00 0.00 42.56 3.91
213 214 1.508632 CGTGCCTCTTTCGGAAAAGA 58.491 50.000 4.53 4.03 46.72 2.52
214 215 0.110192 GCGTGCCTCTTTCGGAAAAG 60.110 55.000 4.53 5.42 42.77 2.27
215 216 1.512156 GGCGTGCCTCTTTCGGAAAA 61.512 55.000 2.98 0.00 0.00 2.29
216 217 1.964373 GGCGTGCCTCTTTCGGAAA 60.964 57.895 2.98 2.78 0.00 3.13
217 218 2.358247 GGCGTGCCTCTTTCGGAA 60.358 61.111 2.98 0.00 0.00 4.30
218 219 4.388499 GGGCGTGCCTCTTTCGGA 62.388 66.667 11.25 0.00 36.10 4.55
221 222 3.423154 CACGGGCGTGCCTCTTTC 61.423 66.667 11.25 0.00 39.39 2.62
233 234 4.735132 TTTCGCGAGAGGCACGGG 62.735 66.667 9.59 0.00 43.84 5.28
276 279 2.076863 CGTGCCTCTTTCGGAAAGAAT 58.923 47.619 27.69 0.00 46.13 2.40
278 281 0.949105 GCGTGCCTCTTTCGGAAAGA 60.949 55.000 26.61 26.61 44.82 2.52
322 325 2.082629 TTGCTTCCGCGAGAGACACA 62.083 55.000 8.23 0.00 39.65 3.72
326 329 0.949105 GGTTTTGCTTCCGCGAGAGA 60.949 55.000 8.23 0.00 39.65 3.10
392 395 1.301401 CCGTGCCTCTTGGAAACGA 60.301 57.895 10.74 0.00 43.27 3.85
437 441 0.309612 TTTTGTTTTCGCGAGAGGCC 59.690 50.000 9.59 0.00 43.69 5.19
506 512 9.476761 CTTTTCGACCAATTTTTCTTTCAAAAG 57.523 29.630 0.00 0.00 37.36 2.27
511 517 5.457473 TCGCTTTTCGACCAATTTTTCTTTC 59.543 36.000 0.00 0.00 43.16 2.62
515 521 4.533222 TCTCGCTTTTCGACCAATTTTTC 58.467 39.130 0.00 0.00 43.16 2.29
581 593 3.784994 CGTGTTTTCGGCTTTTTAAACGA 59.215 39.130 0.00 0.00 34.16 3.85
653 665 0.747852 TCATAGCCATTCGCCACGTA 59.252 50.000 0.00 0.00 38.78 3.57
687 699 1.134670 GGAAGCCTCGCAACTATCAGT 60.135 52.381 0.00 0.00 0.00 3.41
693 705 1.374758 CTTCGGAAGCCTCGCAACT 60.375 57.895 4.57 0.00 0.00 3.16
724 736 5.648092 ACTGTGATAAATGGGAGCAACTAAC 59.352 40.000 0.00 0.00 0.00 2.34
738 750 2.831685 ACTGCGTCCACTGTGATAAA 57.168 45.000 9.86 0.00 0.00 1.40
739 751 2.831685 AACTGCGTCCACTGTGATAA 57.168 45.000 9.86 0.00 0.00 1.75
740 752 3.430236 CCATAACTGCGTCCACTGTGATA 60.430 47.826 9.86 0.00 0.00 2.15
741 753 2.621338 CATAACTGCGTCCACTGTGAT 58.379 47.619 9.86 0.00 0.00 3.06
742 754 1.337728 CCATAACTGCGTCCACTGTGA 60.338 52.381 9.86 0.00 0.00 3.58
785 797 0.179108 GTGGCTCCGTACCTTAGCTG 60.179 60.000 0.00 0.00 36.48 4.24
786 798 0.324460 AGTGGCTCCGTACCTTAGCT 60.324 55.000 8.22 0.00 36.48 3.32
787 799 0.179108 CAGTGGCTCCGTACCTTAGC 60.179 60.000 1.15 1.15 35.47 3.09
788 800 1.471119 TCAGTGGCTCCGTACCTTAG 58.529 55.000 0.00 0.00 0.00 2.18
789 801 1.547372 GTTCAGTGGCTCCGTACCTTA 59.453 52.381 0.00 0.00 0.00 2.69
790 802 0.320697 GTTCAGTGGCTCCGTACCTT 59.679 55.000 0.00 0.00 0.00 3.50
906 919 2.711009 TGGAATGGGTTGAGACTTGAGT 59.289 45.455 0.00 0.00 0.00 3.41
910 923 3.138283 TGAGTTGGAATGGGTTGAGACTT 59.862 43.478 0.00 0.00 0.00 3.01
912 925 2.814336 GTGAGTTGGAATGGGTTGAGAC 59.186 50.000 0.00 0.00 0.00 3.36
952 965 2.968574 AGAGGAGCTTCTGTTGTTCTGA 59.031 45.455 0.00 0.00 0.00 3.27
956 969 2.301583 GAGGAGAGGAGCTTCTGTTGTT 59.698 50.000 0.00 0.00 30.44 2.83
960 973 1.341976 GGAGAGGAGAGGAGCTTCTGT 60.342 57.143 0.00 0.00 30.44 3.41
961 974 1.063717 AGGAGAGGAGAGGAGCTTCTG 60.064 57.143 0.00 0.00 30.44 3.02
965 978 0.846693 GAGAGGAGAGGAGAGGAGCT 59.153 60.000 0.00 0.00 0.00 4.09
966 979 0.846693 AGAGAGGAGAGGAGAGGAGC 59.153 60.000 0.00 0.00 0.00 4.70
1116 1140 2.966309 CTTTCTTGGTGGCGCGGTC 61.966 63.158 8.83 0.00 0.00 4.79
1506 1530 2.771435 CATCGCCTGATGCAAGTGA 58.229 52.632 0.00 0.00 45.06 3.41
1946 1973 6.294176 CCTGAAATTCAATTGGAGAAACTCGT 60.294 38.462 5.42 0.00 0.00 4.18
2027 2059 3.062234 GCCTCGTAACGAATTCAAAGGAG 59.938 47.826 6.22 9.62 34.74 3.69
2087 2119 1.933853 CCAGATTTCGAAGCTAACCCG 59.066 52.381 0.00 0.00 0.00 5.28
2089 2121 4.876107 TCAATCCAGATTTCGAAGCTAACC 59.124 41.667 0.00 0.00 0.00 2.85
2093 2125 7.630242 TTAAATCAATCCAGATTTCGAAGCT 57.370 32.000 5.31 0.00 42.86 3.74
2098 2130 8.410030 TGCATTTTAAATCAATCCAGATTTCG 57.590 30.769 5.31 0.00 42.86 3.46
2116 2148 4.640771 TCTAGTGGGAGTTCTGCATTTT 57.359 40.909 0.00 0.00 0.00 1.82
2132 2164 2.240279 ACAGAAGAGTGCGGTTCTAGT 58.760 47.619 0.00 0.00 31.62 2.57
2172 2204 4.213270 CACACACATATCGGAAAACAGTGT 59.787 41.667 0.00 0.00 39.09 3.55
2176 2208 5.241662 TGATCACACACATATCGGAAAACA 58.758 37.500 0.00 0.00 0.00 2.83
2178 2210 4.875536 CCTGATCACACACATATCGGAAAA 59.124 41.667 0.00 0.00 0.00 2.29
2181 2213 3.295973 TCCTGATCACACACATATCGGA 58.704 45.455 0.00 0.00 0.00 4.55
2186 2218 4.528206 ACACTTCTCCTGATCACACACATA 59.472 41.667 0.00 0.00 0.00 2.29
2245 2277 1.140852 TCAAATCTGGTATCTGCCCCG 59.859 52.381 0.00 0.00 0.00 5.73
2246 2278 3.297134 TTCAAATCTGGTATCTGCCCC 57.703 47.619 0.00 0.00 0.00 5.80
2247 2279 5.859205 AAATTCAAATCTGGTATCTGCCC 57.141 39.130 0.00 0.00 0.00 5.36
2250 2282 9.565213 GAACTGAAAATTCAAATCTGGTATCTG 57.435 33.333 0.00 0.00 36.64 2.90
2251 2283 9.300681 TGAACTGAAAATTCAAATCTGGTATCT 57.699 29.630 0.00 0.00 36.64 1.98
2252 2284 9.346725 GTGAACTGAAAATTCAAATCTGGTATC 57.653 33.333 0.00 0.00 37.80 2.24
2253 2285 8.023128 CGTGAACTGAAAATTCAAATCTGGTAT 58.977 33.333 0.00 0.00 37.80 2.73
2255 2287 6.183360 ACGTGAACTGAAAATTCAAATCTGGT 60.183 34.615 0.00 0.14 37.80 4.00
2256 2288 6.142798 CACGTGAACTGAAAATTCAAATCTGG 59.857 38.462 10.90 0.00 37.80 3.86
2280 2313 1.206132 CCATGGTTGCGGAGTAGTACA 59.794 52.381 2.57 0.00 0.00 2.90
2538 2574 3.134458 GTGAACAGAGGACAAACAGAGG 58.866 50.000 0.00 0.00 0.00 3.69
2545 2581 3.066621 GCAATGTTGTGAACAGAGGACAA 59.933 43.478 0.00 0.00 45.95 3.18
2548 2584 3.213206 AGCAATGTTGTGAACAGAGGA 57.787 42.857 0.00 0.00 45.95 3.71
2557 2593 7.332430 ACATGGATCAAATTAAGCAATGTTGTG 59.668 33.333 0.00 0.00 0.00 3.33
2558 2594 7.388437 ACATGGATCAAATTAAGCAATGTTGT 58.612 30.769 0.00 0.00 0.00 3.32
2559 2595 7.546316 TGACATGGATCAAATTAAGCAATGTTG 59.454 33.333 0.00 0.00 0.00 3.33
2560 2596 7.546667 GTGACATGGATCAAATTAAGCAATGTT 59.453 33.333 0.00 0.00 0.00 2.71
2619 2655 5.084519 AGGTTACTGTTCTCCATGTACTCA 58.915 41.667 0.00 0.00 0.00 3.41
2643 2679 2.591429 TGGTGCAGCCACTTGTCG 60.591 61.111 14.36 0.00 43.61 4.35
2663 2699 2.093447 AGCTGACTAATTTCACCCTCCG 60.093 50.000 0.00 0.00 0.00 4.63
2721 2757 2.026636 AGAATTGCCGTACCCTTTAGCA 60.027 45.455 0.00 0.00 0.00 3.49
2734 2770 7.701924 TGAATGATACGAAATTGAAGAATTGCC 59.298 33.333 0.00 0.00 31.83 4.52
2746 2782 6.753279 CCATGCTTTGTTGAATGATACGAAAT 59.247 34.615 0.00 0.00 0.00 2.17
2780 2831 9.338622 CCTAATCGACCATCTTTAATTTTAGGT 57.661 33.333 0.00 0.00 31.51 3.08
2788 2839 7.997223 TCTCTACTCCTAATCGACCATCTTTAA 59.003 37.037 0.00 0.00 0.00 1.52
2790 2841 6.366340 TCTCTACTCCTAATCGACCATCTTT 58.634 40.000 0.00 0.00 0.00 2.52
2798 2849 7.662258 CCATACTTCTTCTCTACTCCTAATCGA 59.338 40.741 0.00 0.00 0.00 3.59
2830 2881 6.747280 GCGTGCATAAAATTTGTTGTCTAGAT 59.253 34.615 0.00 0.00 0.00 1.98
2832 2883 5.855925 TGCGTGCATAAAATTTGTTGTCTAG 59.144 36.000 0.00 0.00 0.00 2.43
2971 3025 1.891178 CACGCGTATCAGACTTTCGA 58.109 50.000 13.44 0.00 0.00 3.71
3031 3085 0.788391 GTACGCCAACCTGAAGTTCG 59.212 55.000 0.00 0.00 36.18 3.95
3042 3096 3.204505 CTTCGTGAAGGTACGCCAA 57.795 52.632 1.57 0.00 43.40 4.52
3110 3164 2.525629 TTCCACTGCCCGTCCAGA 60.526 61.111 6.57 0.00 36.67 3.86
3221 3275 3.192422 CGGTGCCATGGAAATTTAGTTGA 59.808 43.478 18.40 0.00 0.00 3.18
3222 3276 3.056891 ACGGTGCCATGGAAATTTAGTTG 60.057 43.478 18.40 0.00 0.00 3.16
3238 3292 1.253999 CGAACTCTACGTAACGGTGC 58.746 55.000 0.00 0.00 0.00 5.01
3246 3300 1.604693 CCAGGCAAACGAACTCTACGT 60.605 52.381 0.00 0.00 45.89 3.57
3247 3301 1.068474 CCAGGCAAACGAACTCTACG 58.932 55.000 0.00 0.00 0.00 3.51
3248 3302 0.796927 GCCAGGCAAACGAACTCTAC 59.203 55.000 6.55 0.00 0.00 2.59
3249 3303 0.321298 GGCCAGGCAAACGAACTCTA 60.321 55.000 15.19 0.00 0.00 2.43
3250 3304 1.600916 GGCCAGGCAAACGAACTCT 60.601 57.895 15.19 0.00 0.00 3.24
3251 3305 2.954611 GGCCAGGCAAACGAACTC 59.045 61.111 15.19 0.00 0.00 3.01
3252 3306 2.978010 CGGCCAGGCAAACGAACT 60.978 61.111 15.19 0.00 0.00 3.01
3253 3307 4.700365 GCGGCCAGGCAAACGAAC 62.700 66.667 15.19 0.00 0.00 3.95
3290 3344 3.997397 TACCTGCAGGCAACGCGA 61.997 61.111 33.06 6.42 46.39 5.87
3291 3345 3.788766 GTACCTGCAGGCAACGCG 61.789 66.667 33.06 3.53 46.39 6.01
3292 3346 3.788766 CGTACCTGCAGGCAACGC 61.789 66.667 34.66 20.15 39.75 4.84
3293 3347 2.357034 ACGTACCTGCAGGCAACG 60.357 61.111 39.16 39.16 46.78 4.10
3294 3348 2.325082 CCACGTACCTGCAGGCAAC 61.325 63.158 33.06 27.25 39.32 4.17
3295 3349 2.031919 CCACGTACCTGCAGGCAA 59.968 61.111 33.06 18.60 39.32 4.52
3296 3350 4.697756 GCCACGTACCTGCAGGCA 62.698 66.667 33.06 18.72 44.59 4.75
3468 3525 3.426117 ATCGAAGTGCGCGGGTAGG 62.426 63.158 8.83 0.00 40.61 3.18
3516 3573 3.933861 AAGTTCAGTTCCACTTCCACT 57.066 42.857 0.00 0.00 0.00 4.00
3789 3878 2.298729 ACACCAAAAACACAGTTGCAGT 59.701 40.909 0.00 0.00 0.00 4.40
3795 3884 2.428491 TGACGACACCAAAAACACAGT 58.572 42.857 0.00 0.00 0.00 3.55
3798 3887 2.918600 GGTTTGACGACACCAAAAACAC 59.081 45.455 0.00 0.00 35.57 3.32
3799 3888 2.414293 CGGTTTGACGACACCAAAAACA 60.414 45.455 0.00 0.00 35.57 2.83
3800 3889 2.178783 CGGTTTGACGACACCAAAAAC 58.821 47.619 0.00 0.00 35.57 2.43
3801 3890 1.811359 ACGGTTTGACGACACCAAAAA 59.189 42.857 0.00 0.00 35.57 1.94
3802 3891 1.451067 ACGGTTTGACGACACCAAAA 58.549 45.000 0.00 0.00 35.57 2.44
3804 3893 1.451067 AAACGGTTTGACGACACCAA 58.549 45.000 5.12 0.00 37.61 3.67
3806 3895 1.817609 CAAAACGGTTTGACGACACC 58.182 50.000 21.39 0.00 45.99 4.16
3807 3896 1.185189 GCAAAACGGTTTGACGACAC 58.815 50.000 29.42 6.67 45.99 3.67
3808 3897 1.088306 AGCAAAACGGTTTGACGACA 58.912 45.000 29.42 0.00 45.99 4.35
3811 3900 0.248458 AGCAGCAAAACGGTTTGACG 60.248 50.000 29.42 18.71 45.99 4.35
3812 3901 1.477105 GAGCAGCAAAACGGTTTGAC 58.523 50.000 29.42 19.19 45.99 3.18
3813 3902 0.383949 GGAGCAGCAAAACGGTTTGA 59.616 50.000 29.42 0.00 45.99 2.69
3814 3903 0.102120 TGGAGCAGCAAAACGGTTTG 59.898 50.000 21.60 21.60 45.88 2.93
3816 3905 0.314935 CATGGAGCAGCAAAACGGTT 59.685 50.000 0.00 0.00 0.00 4.44
3817 3906 1.959085 CATGGAGCAGCAAAACGGT 59.041 52.632 0.00 0.00 0.00 4.83
3819 3908 4.157817 GCATGGAGCAGCAAAACG 57.842 55.556 0.00 0.00 44.79 3.60
3929 4031 2.283529 ACAGCCATTCGTCCGTCCT 61.284 57.895 0.00 0.00 0.00 3.85
3981 4083 1.816835 TCCGATCGACTAGCTTGTTGT 59.183 47.619 18.66 3.50 0.00 3.32
3982 4084 2.561733 TCCGATCGACTAGCTTGTTG 57.438 50.000 18.66 9.07 0.00 3.33
3983 4085 2.952978 AGATCCGATCGACTAGCTTGTT 59.047 45.455 18.66 0.00 0.00 2.83
4002 4107 3.134081 ACACAACCGGAGAAGAAAAGAGA 59.866 43.478 9.46 0.00 0.00 3.10
4040 4145 4.558095 GCTGTTTGATTGAGTCATTGCTGT 60.558 41.667 0.00 0.00 36.54 4.40
4041 4146 3.918591 GCTGTTTGATTGAGTCATTGCTG 59.081 43.478 0.00 0.00 36.54 4.41
4042 4147 3.570975 TGCTGTTTGATTGAGTCATTGCT 59.429 39.130 0.00 0.00 36.54 3.91
4043 4148 3.904571 TGCTGTTTGATTGAGTCATTGC 58.095 40.909 0.00 0.00 36.54 3.56
4066 4171 1.577328 ATTATGCGCCGGCTGTATGC 61.577 55.000 26.68 20.47 40.82 3.14
4067 4172 0.443869 GATTATGCGCCGGCTGTATG 59.556 55.000 26.68 9.69 40.82 2.39
4068 4173 0.034756 TGATTATGCGCCGGCTGTAT 59.965 50.000 26.68 23.09 40.82 2.29
4069 4174 0.179070 TTGATTATGCGCCGGCTGTA 60.179 50.000 26.68 17.82 40.82 2.74
4070 4175 1.439353 CTTGATTATGCGCCGGCTGT 61.439 55.000 26.68 12.61 40.82 4.40
4071 4176 1.280746 CTTGATTATGCGCCGGCTG 59.719 57.895 26.68 19.05 40.82 4.85
4072 4177 1.893808 CCTTGATTATGCGCCGGCT 60.894 57.895 26.68 8.66 40.82 5.52
4073 4178 2.639286 CCTTGATTATGCGCCGGC 59.361 61.111 19.07 19.07 40.52 6.13
4074 4179 0.602638 TAGCCTTGATTATGCGCCGG 60.603 55.000 4.18 0.00 0.00 6.13
4078 4183 2.487934 ACTGCTAGCCTTGATTATGCG 58.512 47.619 13.29 0.00 0.00 4.73
4146 4251 2.421739 CCGGGGAAGCATAGACGG 59.578 66.667 0.00 0.00 35.01 4.79
4148 4253 1.523938 GTGCCGGGGAAGCATAGAC 60.524 63.158 2.18 0.00 43.29 2.59
4190 4295 6.254589 CGAAATTCAACAACTAAAGCAAACCA 59.745 34.615 0.00 0.00 0.00 3.67
4209 4318 3.993736 GCAAACTTATGGCAACCGAAATT 59.006 39.130 0.00 0.00 0.00 1.82
4213 4322 0.519519 CGCAAACTTATGGCAACCGA 59.480 50.000 0.00 0.00 0.00 4.69
4214 4323 0.239879 ACGCAAACTTATGGCAACCG 59.760 50.000 0.00 0.00 0.00 4.44
4216 4325 1.069500 ACGACGCAAACTTATGGCAAC 60.069 47.619 0.00 0.00 0.00 4.17
4218 4327 1.069568 CAACGACGCAAACTTATGGCA 60.070 47.619 0.00 0.00 0.00 4.92
4219 4328 1.602191 CAACGACGCAAACTTATGGC 58.398 50.000 0.00 0.00 0.00 4.40
4220 4329 1.602191 GCAACGACGCAAACTTATGG 58.398 50.000 0.00 0.00 0.00 2.74
4221 4330 1.069568 TGGCAACGACGCAAACTTATG 60.070 47.619 0.00 0.00 42.51 1.90
4222 4331 1.231221 TGGCAACGACGCAAACTTAT 58.769 45.000 0.00 0.00 42.51 1.73
4223 4332 1.195900 GATGGCAACGACGCAAACTTA 59.804 47.619 0.00 0.00 42.51 2.24
4227 4356 2.553770 CGATGGCAACGACGCAAA 59.446 55.556 12.11 0.00 42.51 3.68
4234 4363 3.124636 ACTTAAGTTAAGCGATGGCAACG 59.875 43.478 20.31 13.18 43.41 4.10
4245 4374 4.325472 CGTACGGGCTGAACTTAAGTTAAG 59.675 45.833 23.65 23.65 39.11 1.85
4247 4376 3.255642 ACGTACGGGCTGAACTTAAGTTA 59.744 43.478 20.58 8.68 38.56 2.24
4249 4378 1.615392 ACGTACGGGCTGAACTTAAGT 59.385 47.619 21.06 1.12 0.00 2.24
4250 4379 2.358939 ACGTACGGGCTGAACTTAAG 57.641 50.000 21.06 0.00 0.00 1.85
4251 4380 2.414029 CGTACGTACGGGCTGAACTTAA 60.414 50.000 34.54 0.00 45.30 1.85
4252 4381 1.130373 CGTACGTACGGGCTGAACTTA 59.870 52.381 34.54 0.00 45.30 2.24
4270 4417 0.739813 GAAATGGCGAGTGCTACCGT 60.740 55.000 0.00 0.00 42.25 4.83
4277 4424 0.169672 CCTGCTTGAAATGGCGAGTG 59.830 55.000 0.00 0.00 0.00 3.51
4281 4428 2.182537 GCCCTGCTTGAAATGGCG 59.817 61.111 0.00 0.00 31.55 5.69
4312 4486 2.043953 GCCGGCCCCAGAAGAAAT 60.044 61.111 18.11 0.00 0.00 2.17
4313 4487 4.360405 GGCCGGCCCCAGAAGAAA 62.360 66.667 36.64 0.00 0.00 2.52
4337 8058 2.282180 CGTTCCTGGGTTGGGTGG 60.282 66.667 0.00 0.00 0.00 4.61
4374 8095 2.510411 CAGTGGTCAGTGGTGGCA 59.490 61.111 0.00 0.00 0.00 4.92
4407 8128 0.830648 CTCCCCTCTCGTGGCAATAA 59.169 55.000 0.00 0.00 0.00 1.40
4412 8133 3.844090 GCTCTCCCCTCTCGTGGC 61.844 72.222 0.00 0.00 0.00 5.01
4420 8141 2.757917 GACGAGCTGCTCTCCCCT 60.758 66.667 25.59 4.48 38.62 4.79
4421 8142 4.200283 CGACGAGCTGCTCTCCCC 62.200 72.222 25.59 11.54 38.62 4.81
4501 8226 1.118965 GTTTTTGGGGTGGGGTGAGG 61.119 60.000 0.00 0.00 0.00 3.86
4503 8228 1.075151 GGTTTTTGGGGTGGGGTGA 60.075 57.895 0.00 0.00 0.00 4.02
4505 8230 1.979389 ATGGGTTTTTGGGGTGGGGT 61.979 55.000 0.00 0.00 0.00 4.95
4506 8231 1.151921 ATGGGTTTTTGGGGTGGGG 60.152 57.895 0.00 0.00 0.00 4.96
4507 8232 0.472734 TGATGGGTTTTTGGGGTGGG 60.473 55.000 0.00 0.00 0.00 4.61
4508 8233 1.554617 GATGATGGGTTTTTGGGGTGG 59.445 52.381 0.00 0.00 0.00 4.61
4510 8235 1.150986 TGGATGATGGGTTTTTGGGGT 59.849 47.619 0.00 0.00 0.00 4.95
4512 8237 3.547054 CATGGATGATGGGTTTTTGGG 57.453 47.619 0.00 0.00 0.00 4.12
4527 8252 4.758251 CGGCTGTGCGTCCATGGA 62.758 66.667 11.44 11.44 0.00 3.41
4544 8269 4.796495 GGATGGACGTGGTGGCCC 62.796 72.222 0.00 0.00 0.00 5.80
4545 8270 3.682292 GAGGATGGACGTGGTGGCC 62.682 68.421 0.00 0.00 0.00 5.36
4546 8271 2.125106 GAGGATGGACGTGGTGGC 60.125 66.667 0.00 0.00 0.00 5.01
4657 8382 1.029408 TTGTTGCTTGTGCTGTCCGT 61.029 50.000 0.00 0.00 40.48 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.