Multiple sequence alignment - TraesCS1B01G192100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G192100 chr1B 100.000 4248 0 0 1 4248 343665738 343661491 0.000000e+00 7845.0
1 TraesCS1B01G192100 chr1B 100.000 46 0 0 391 436 576029140 576029095 7.570000e-13 86.1
2 TraesCS1B01G192100 chr1D 93.765 2422 112 17 919 3325 270024014 270021617 0.000000e+00 3600.0
3 TraesCS1B01G192100 chr1D 97.401 885 23 0 3364 4248 270021618 270020734 0.000000e+00 1507.0
4 TraesCS1B01G192100 chr1D 86.354 491 46 13 2 482 270024704 270024225 2.260000e-142 516.0
5 TraesCS1B01G192100 chr1D 88.506 261 25 5 47 305 430320475 430320218 1.150000e-80 311.0
6 TraesCS1B01G192100 chr1A 94.395 1784 73 9 819 2584 343621942 343620168 0.000000e+00 2715.0
7 TraesCS1B01G192100 chr1A 96.105 1669 54 7 2581 4248 343619141 343617483 0.000000e+00 2712.0
8 TraesCS1B01G192100 chr1A 90.228 307 20 7 473 775 525024586 525024886 3.980000e-105 392.0
9 TraesCS1B01G192100 chr5D 95.063 790 34 5 2334 3123 325957147 325956363 0.000000e+00 1238.0
10 TraesCS1B01G192100 chr5D 86.447 546 33 9 832 1366 325958850 325959365 1.030000e-155 560.0
11 TraesCS1B01G192100 chr5D 85.821 268 36 2 47 313 520111444 520111710 2.500000e-72 283.0
12 TraesCS1B01G192100 chr7B 93.561 792 40 5 2334 3123 5917895 5917113 0.000000e+00 1170.0
13 TraesCS1B01G192100 chr7B 89.902 307 22 2 475 774 739246388 739246084 1.850000e-103 387.0
14 TraesCS1B01G192100 chr7B 86.590 261 32 3 47 305 104298591 104298332 6.950000e-73 285.0
15 TraesCS1B01G192100 chr7B 91.667 60 3 2 384 442 701637092 701637034 9.790000e-12 82.4
16 TraesCS1B01G192100 chr7B 95.745 47 1 1 389 434 683166851 683166897 1.640000e-09 75.0
17 TraesCS1B01G192100 chr5A 94.861 720 35 2 2404 3123 430641801 430642518 0.000000e+00 1123.0
18 TraesCS1B01G192100 chr5A 95.833 72 3 0 2334 2405 430641463 430641534 2.680000e-22 117.0
19 TraesCS1B01G192100 chr5B 92.484 306 16 2 475 773 124716393 124716698 8.440000e-117 431.0
20 TraesCS1B01G192100 chr5B 85.338 266 37 2 48 312 703850174 703849910 1.500000e-69 274.0
21 TraesCS1B01G192100 chr5B 84.758 269 41 0 41 309 511291327 511291595 1.950000e-68 270.0
22 TraesCS1B01G192100 chr4A 92.459 305 17 1 474 772 10642050 10641746 8.440000e-117 431.0
23 TraesCS1B01G192100 chr4A 90.909 55 4 1 389 442 143238944 143238890 5.890000e-09 73.1
24 TraesCS1B01G192100 chr2B 90.203 296 25 4 478 773 30230368 30230077 2.400000e-102 383.0
25 TraesCS1B01G192100 chr2B 91.071 56 3 2 384 439 30299019 30298966 1.640000e-09 75.0
26 TraesCS1B01G192100 chr6A 89.404 302 27 3 474 772 504938819 504939118 4.010000e-100 375.0
27 TraesCS1B01G192100 chr6A 95.833 48 0 1 390 435 456781875 456781922 4.550000e-10 76.8
28 TraesCS1B01G192100 chrUn 89.527 296 27 2 478 773 178511019 178511310 5.190000e-99 372.0
29 TraesCS1B01G192100 chrUn 88.851 296 29 2 478 773 178494292 178494583 1.120000e-95 361.0
30 TraesCS1B01G192100 chr6B 88.026 309 29 6 476 781 233671702 233671399 4.040000e-95 359.0
31 TraesCS1B01G192100 chr7D 86.364 264 34 2 43 305 515486967 515487229 1.930000e-73 287.0
32 TraesCS1B01G192100 chr7D 100.000 43 0 0 392 434 235530992 235530950 3.520000e-11 80.5
33 TraesCS1B01G192100 chr4D 84.871 271 37 4 49 317 12696149 12695881 1.950000e-68 270.0
34 TraesCS1B01G192100 chr3A 84.871 271 38 3 47 315 134257424 134257693 1.950000e-68 270.0
35 TraesCS1B01G192100 chr2A 97.778 45 0 1 391 434 43462451 43462495 4.550000e-10 76.8
36 TraesCS1B01G192100 chr4B 95.745 47 1 1 391 436 591486555 591486601 1.640000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G192100 chr1B 343661491 343665738 4247 True 7845.000000 7845 100.000000 1 4248 1 chr1B.!!$R1 4247
1 TraesCS1B01G192100 chr1D 270020734 270024704 3970 True 1874.333333 3600 92.506667 2 4248 3 chr1D.!!$R2 4246
2 TraesCS1B01G192100 chr1A 343617483 343621942 4459 True 2713.500000 2715 95.250000 819 4248 2 chr1A.!!$R1 3429
3 TraesCS1B01G192100 chr5D 325956363 325957147 784 True 1238.000000 1238 95.063000 2334 3123 1 chr5D.!!$R1 789
4 TraesCS1B01G192100 chr5D 325958850 325959365 515 False 560.000000 560 86.447000 832 1366 1 chr5D.!!$F1 534
5 TraesCS1B01G192100 chr7B 5917113 5917895 782 True 1170.000000 1170 93.561000 2334 3123 1 chr7B.!!$R1 789
6 TraesCS1B01G192100 chr5A 430641463 430642518 1055 False 620.000000 1123 95.347000 2334 3123 2 chr5A.!!$F1 789

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
520 528 0.102300 AGCGCTCATATACACGTGCA 59.898 50.0 17.22 2.06 35.49 4.57 F
551 559 0.179250 CTATGAACGCACACACGCAC 60.179 55.0 0.00 0.00 36.19 5.34 F
1393 1535 0.240945 GTCCGAAACCGAGGTAACGA 59.759 55.0 17.60 1.34 46.39 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1952 2107 0.682209 AGCCATTGTCACCCAGCATC 60.682 55.0 0.0 0.0 0.0 3.91 R
1953 2108 0.968901 CAGCCATTGTCACCCAGCAT 60.969 55.0 0.0 0.0 0.0 3.79 R
3260 4718 0.966920 TCCTTCTCTGACCCGTGTTC 59.033 55.0 0.0 0.0 0.0 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 6.851222 AAGTATAATGTTGCTCTTCATCGG 57.149 37.500 0.00 0.00 0.00 4.18
60 61 1.447838 GTTGCTCTTCATCGGCGGA 60.448 57.895 7.21 0.00 0.00 5.54
61 62 1.153568 TTGCTCTTCATCGGCGGAG 60.154 57.895 7.21 6.39 0.00 4.63
74 75 1.282875 GCGGAGGTTGTTGTTCTGC 59.717 57.895 0.00 0.00 36.21 4.26
81 82 1.534595 GGTTGTTGTTCTGCTGTGCTG 60.535 52.381 0.00 0.00 0.00 4.41
87 88 0.590195 GTTCTGCTGTGCTGGTTCTG 59.410 55.000 0.00 0.00 0.00 3.02
89 90 1.047801 TCTGCTGTGCTGGTTCTGTA 58.952 50.000 0.00 0.00 0.00 2.74
90 91 1.001293 TCTGCTGTGCTGGTTCTGTAG 59.999 52.381 0.00 0.00 0.00 2.74
93 94 1.941668 GCTGTGCTGGTTCTGTAGGAC 60.942 57.143 0.00 0.00 36.03 3.85
102 103 4.616553 TGGTTCTGTAGGACCTTAGCATA 58.383 43.478 10.60 0.00 0.00 3.14
105 106 5.105064 GGTTCTGTAGGACCTTAGCATAACA 60.105 44.000 0.00 0.00 0.00 2.41
111 112 5.763876 AGGACCTTAGCATAACAACTTCT 57.236 39.130 0.00 0.00 0.00 2.85
126 127 7.507672 AACAACTTCTCGATTGTCTATTACG 57.492 36.000 2.79 0.00 38.08 3.18
148 149 2.488153 ACAAGTTTTGCCCGATTCTAGC 59.512 45.455 0.00 0.00 0.00 3.42
149 150 2.487762 CAAGTTTTGCCCGATTCTAGCA 59.512 45.455 0.00 0.00 33.97 3.49
152 153 1.750193 TTTGCCCGATTCTAGCAAGG 58.250 50.000 9.31 0.00 46.30 3.61
153 154 0.908910 TTGCCCGATTCTAGCAAGGA 59.091 50.000 6.22 0.00 41.35 3.36
157 158 1.202698 CCCGATTCTAGCAAGGAAGGG 60.203 57.143 0.00 0.00 0.00 3.95
159 160 1.811941 CGATTCTAGCAAGGAAGGGGC 60.812 57.143 0.00 0.00 0.00 5.80
227 228 3.191581 CGCTAGGTGGTCTATGTATCTGG 59.808 52.174 0.00 0.00 0.00 3.86
280 281 5.181009 TGTACTGCCAAGATTGAAGATGAG 58.819 41.667 0.00 0.00 0.00 2.90
305 307 5.582550 AGAAGGAAGTTTTCTCGCAAAAAG 58.417 37.500 0.00 0.00 29.05 2.27
308 310 5.582550 AGGAAGTTTTCTCGCAAAAAGAAG 58.417 37.500 0.00 0.00 34.42 2.85
309 311 5.125578 AGGAAGTTTTCTCGCAAAAAGAAGT 59.874 36.000 0.00 0.00 34.42 3.01
310 312 6.317893 AGGAAGTTTTCTCGCAAAAAGAAGTA 59.682 34.615 0.00 0.00 34.42 2.24
311 313 7.013369 AGGAAGTTTTCTCGCAAAAAGAAGTAT 59.987 33.333 0.00 0.00 34.42 2.12
312 314 8.287503 GGAAGTTTTCTCGCAAAAAGAAGTATA 58.712 33.333 0.00 0.00 34.42 1.47
314 316 9.447040 AAGTTTTCTCGCAAAAAGAAGTATAAC 57.553 29.630 0.00 0.00 34.42 1.89
315 317 8.617809 AGTTTTCTCGCAAAAAGAAGTATAACA 58.382 29.630 0.00 0.00 34.42 2.41
316 318 8.679385 GTTTTCTCGCAAAAAGAAGTATAACAC 58.321 33.333 0.00 0.00 34.42 3.32
420 428 9.770097 TTTTAATTGTTTGGATTGCTTATCACA 57.230 25.926 0.00 0.00 34.77 3.58
421 429 9.941325 TTTAATTGTTTGGATTGCTTATCACAT 57.059 25.926 0.00 0.00 34.77 3.21
422 430 7.837202 AATTGTTTGGATTGCTTATCACATG 57.163 32.000 0.00 0.00 34.77 3.21
423 431 5.981088 TGTTTGGATTGCTTATCACATGT 57.019 34.783 0.00 0.00 34.77 3.21
424 432 5.712004 TGTTTGGATTGCTTATCACATGTG 58.288 37.500 20.18 20.18 34.77 3.21
425 433 5.243507 TGTTTGGATTGCTTATCACATGTGT 59.756 36.000 24.63 14.61 34.77 3.72
426 434 5.565592 TTGGATTGCTTATCACATGTGTC 57.434 39.130 24.63 12.27 34.77 3.67
427 435 4.587891 TGGATTGCTTATCACATGTGTCA 58.412 39.130 24.63 11.42 34.77 3.58
428 436 4.395854 TGGATTGCTTATCACATGTGTCAC 59.604 41.667 24.63 11.82 34.77 3.67
429 437 4.494690 GGATTGCTTATCACATGTGTCACG 60.495 45.833 24.63 12.41 34.77 4.35
430 438 3.038788 TGCTTATCACATGTGTCACGT 57.961 42.857 24.63 9.96 0.00 4.49
431 439 2.736192 TGCTTATCACATGTGTCACGTG 59.264 45.455 24.63 21.25 40.80 4.49
432 440 2.094258 GCTTATCACATGTGTCACGTGG 59.906 50.000 25.31 15.75 39.36 4.94
433 441 3.325870 CTTATCACATGTGTCACGTGGT 58.674 45.455 25.31 14.24 39.36 4.16
434 442 4.490743 CTTATCACATGTGTCACGTGGTA 58.509 43.478 25.31 13.34 39.36 3.25
435 443 2.892784 TCACATGTGTCACGTGGTAA 57.107 45.000 25.31 10.31 39.36 2.85
436 444 2.749776 TCACATGTGTCACGTGGTAAG 58.250 47.619 25.31 13.95 39.36 2.34
437 445 2.101750 TCACATGTGTCACGTGGTAAGT 59.898 45.455 25.31 4.98 39.36 2.24
438 446 2.869801 CACATGTGTCACGTGGTAAGTT 59.130 45.455 25.31 4.32 39.36 2.66
439 447 3.311322 CACATGTGTCACGTGGTAAGTTT 59.689 43.478 25.31 3.65 39.36 2.66
440 448 3.942748 ACATGTGTCACGTGGTAAGTTTT 59.057 39.130 25.31 2.98 39.36 2.43
441 449 4.396790 ACATGTGTCACGTGGTAAGTTTTT 59.603 37.500 25.31 2.32 39.36 1.94
442 450 4.343811 TGTGTCACGTGGTAAGTTTTTG 57.656 40.909 17.00 0.00 0.00 2.44
445 453 4.789629 GTGTCACGTGGTAAGTTTTTGTTC 59.210 41.667 17.00 0.00 0.00 3.18
460 468 8.173321 AGTTTTTGTTCTTTTTGAGAATCGTG 57.827 30.769 0.00 0.00 45.66 4.35
503 511 5.060662 TGAGTATCAGTACAGACACAAGC 57.939 43.478 0.00 0.00 42.56 4.01
504 512 4.098055 AGTATCAGTACAGACACAAGCG 57.902 45.455 0.00 0.00 33.09 4.68
505 513 1.714794 ATCAGTACAGACACAAGCGC 58.285 50.000 0.00 0.00 0.00 5.92
506 514 0.673985 TCAGTACAGACACAAGCGCT 59.326 50.000 2.64 2.64 0.00 5.92
507 515 1.063806 CAGTACAGACACAAGCGCTC 58.936 55.000 12.06 0.00 0.00 5.03
508 516 0.673985 AGTACAGACACAAGCGCTCA 59.326 50.000 12.06 0.00 0.00 4.26
509 517 1.273606 AGTACAGACACAAGCGCTCAT 59.726 47.619 12.06 0.00 0.00 2.90
510 518 2.492088 AGTACAGACACAAGCGCTCATA 59.508 45.455 12.06 0.00 0.00 2.15
511 519 2.680312 ACAGACACAAGCGCTCATAT 57.320 45.000 12.06 0.00 0.00 1.78
512 520 3.801114 ACAGACACAAGCGCTCATATA 57.199 42.857 12.06 0.00 0.00 0.86
513 521 3.448686 ACAGACACAAGCGCTCATATAC 58.551 45.455 12.06 1.00 0.00 1.47
514 522 3.119137 ACAGACACAAGCGCTCATATACA 60.119 43.478 12.06 0.00 0.00 2.29
515 523 3.243877 CAGACACAAGCGCTCATATACAC 59.756 47.826 12.06 0.00 0.00 2.90
516 524 2.193447 ACACAAGCGCTCATATACACG 58.807 47.619 12.06 0.00 0.00 4.49
517 525 2.193447 CACAAGCGCTCATATACACGT 58.807 47.619 12.06 0.00 0.00 4.49
518 526 2.034591 CACAAGCGCTCATATACACGTG 60.035 50.000 12.06 15.48 0.00 4.49
519 527 1.071239 CAAGCGCTCATATACACGTGC 60.071 52.381 17.22 0.00 0.00 5.34
520 528 0.102300 AGCGCTCATATACACGTGCA 59.898 50.000 17.22 2.06 35.49 4.57
521 529 1.139989 GCGCTCATATACACGTGCAT 58.860 50.000 17.22 11.52 33.41 3.96
522 530 2.030274 AGCGCTCATATACACGTGCATA 60.030 45.455 17.22 13.68 35.49 3.14
523 531 2.090658 GCGCTCATATACACGTGCATAC 59.909 50.000 17.22 0.00 33.41 2.39
524 532 3.305110 CGCTCATATACACGTGCATACA 58.695 45.455 17.22 2.39 0.00 2.29
525 533 3.920412 CGCTCATATACACGTGCATACAT 59.080 43.478 17.22 4.05 0.00 2.29
526 534 4.385748 CGCTCATATACACGTGCATACATT 59.614 41.667 17.22 0.00 0.00 2.71
527 535 5.443301 CGCTCATATACACGTGCATACATTC 60.443 44.000 17.22 3.09 0.00 2.67
528 536 5.405269 GCTCATATACACGTGCATACATTCA 59.595 40.000 17.22 0.00 0.00 2.57
529 537 6.091305 GCTCATATACACGTGCATACATTCAT 59.909 38.462 17.22 0.00 0.00 2.57
530 538 7.581011 TCATATACACGTGCATACATTCATC 57.419 36.000 17.22 0.00 0.00 2.92
531 539 6.589907 TCATATACACGTGCATACATTCATCC 59.410 38.462 17.22 0.00 0.00 3.51
532 540 2.288666 ACACGTGCATACATTCATCCC 58.711 47.619 17.22 0.00 0.00 3.85
533 541 2.092968 ACACGTGCATACATTCATCCCT 60.093 45.455 17.22 0.00 0.00 4.20
534 542 3.133901 ACACGTGCATACATTCATCCCTA 59.866 43.478 17.22 0.00 0.00 3.53
535 543 4.202357 ACACGTGCATACATTCATCCCTAT 60.202 41.667 17.22 0.00 0.00 2.57
536 544 4.152938 CACGTGCATACATTCATCCCTATG 59.847 45.833 0.82 0.00 0.00 2.23
537 545 4.040339 ACGTGCATACATTCATCCCTATGA 59.960 41.667 0.00 0.00 40.43 2.15
545 553 2.309528 TCATCCCTATGAACGCACAC 57.690 50.000 0.00 0.00 39.20 3.82
546 554 1.552792 TCATCCCTATGAACGCACACA 59.447 47.619 0.00 0.00 39.20 3.72
547 555 1.665679 CATCCCTATGAACGCACACAC 59.334 52.381 0.00 0.00 34.84 3.82
548 556 0.389296 TCCCTATGAACGCACACACG 60.389 55.000 0.00 0.00 39.50 4.49
549 557 1.419922 CCTATGAACGCACACACGC 59.580 57.895 0.00 0.00 36.19 5.34
550 558 1.288419 CCTATGAACGCACACACGCA 61.288 55.000 0.00 0.00 36.19 5.24
551 559 0.179250 CTATGAACGCACACACGCAC 60.179 55.000 0.00 0.00 36.19 5.34
552 560 0.876342 TATGAACGCACACACGCACA 60.876 50.000 0.00 0.00 36.19 4.57
553 561 2.350760 GAACGCACACACGCACAC 60.351 61.111 0.00 0.00 36.19 3.82
554 562 3.783588 GAACGCACACACGCACACC 62.784 63.158 0.00 0.00 36.19 4.16
557 565 2.280524 GCACACACGCACACCCTA 60.281 61.111 0.00 0.00 0.00 3.53
558 566 1.671054 GCACACACGCACACCCTAT 60.671 57.895 0.00 0.00 0.00 2.57
559 567 1.635663 GCACACACGCACACCCTATC 61.636 60.000 0.00 0.00 0.00 2.08
560 568 1.019278 CACACACGCACACCCTATCC 61.019 60.000 0.00 0.00 0.00 2.59
561 569 1.449601 CACACGCACACCCTATCCC 60.450 63.158 0.00 0.00 0.00 3.85
562 570 1.612442 ACACGCACACCCTATCCCT 60.612 57.895 0.00 0.00 0.00 4.20
563 571 0.324923 ACACGCACACCCTATCCCTA 60.325 55.000 0.00 0.00 0.00 3.53
564 572 1.048601 CACGCACACCCTATCCCTAT 58.951 55.000 0.00 0.00 0.00 2.57
565 573 1.048601 ACGCACACCCTATCCCTATG 58.951 55.000 0.00 0.00 0.00 2.23
566 574 1.338107 CGCACACCCTATCCCTATGA 58.662 55.000 0.00 0.00 0.00 2.15
567 575 1.273606 CGCACACCCTATCCCTATGAG 59.726 57.143 0.00 0.00 0.00 2.90
568 576 1.002544 GCACACCCTATCCCTATGAGC 59.997 57.143 0.00 0.00 0.00 4.26
569 577 2.329267 CACACCCTATCCCTATGAGCA 58.671 52.381 0.00 0.00 0.00 4.26
570 578 2.301296 CACACCCTATCCCTATGAGCAG 59.699 54.545 0.00 0.00 0.00 4.24
571 579 2.180086 ACACCCTATCCCTATGAGCAGA 59.820 50.000 0.00 0.00 0.00 4.26
572 580 2.830923 CACCCTATCCCTATGAGCAGAG 59.169 54.545 0.00 0.00 0.00 3.35
573 581 2.724672 ACCCTATCCCTATGAGCAGAGA 59.275 50.000 0.00 0.00 0.00 3.10
574 582 3.096092 CCCTATCCCTATGAGCAGAGAC 58.904 54.545 0.00 0.00 0.00 3.36
575 583 3.245586 CCCTATCCCTATGAGCAGAGACT 60.246 52.174 0.00 0.00 0.00 3.24
576 584 3.763360 CCTATCCCTATGAGCAGAGACTG 59.237 52.174 0.00 0.00 34.12 3.51
577 585 3.609256 ATCCCTATGAGCAGAGACTGA 57.391 47.619 2.81 0.00 32.44 3.41
578 586 2.942804 TCCCTATGAGCAGAGACTGAG 58.057 52.381 2.81 0.00 32.44 3.35
579 587 1.340889 CCCTATGAGCAGAGACTGAGC 59.659 57.143 2.81 0.00 32.44 4.26
580 588 1.340889 CCTATGAGCAGAGACTGAGCC 59.659 57.143 2.81 0.00 32.44 4.70
581 589 1.001487 CTATGAGCAGAGACTGAGCCG 60.001 57.143 2.81 0.00 32.44 5.52
582 590 1.674764 ATGAGCAGAGACTGAGCCGG 61.675 60.000 0.00 0.00 32.44 6.13
583 591 3.714871 GAGCAGAGACTGAGCCGGC 62.715 68.421 21.89 21.89 32.44 6.13
584 592 4.074526 GCAGAGACTGAGCCGGCA 62.075 66.667 31.54 7.98 32.44 5.69
585 593 2.898738 CAGAGACTGAGCCGGCAT 59.101 61.111 31.54 14.28 32.44 4.40
586 594 2.021068 GCAGAGACTGAGCCGGCATA 62.021 60.000 31.54 16.21 32.44 3.14
587 595 0.678395 CAGAGACTGAGCCGGCATAT 59.322 55.000 31.54 8.11 32.44 1.78
588 596 0.965439 AGAGACTGAGCCGGCATATC 59.035 55.000 31.54 18.63 0.00 1.63
589 597 0.676184 GAGACTGAGCCGGCATATCA 59.324 55.000 31.54 22.44 0.00 2.15
590 598 1.274728 GAGACTGAGCCGGCATATCAT 59.725 52.381 31.54 13.17 0.00 2.45
591 599 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
592 600 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
593 601 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
594 602 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
595 603 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
596 604 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
597 605 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
598 606 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
599 607 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
600 608 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
601 609 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
602 610 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
603 611 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
604 612 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
605 613 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
606 614 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
607 615 7.232994 GCATATCATCTTGAGATTTACGAAGC 58.767 38.462 0.00 0.00 31.21 3.86
608 616 7.623089 GCATATCATCTTGAGATTTACGAAGCC 60.623 40.741 0.00 0.00 31.21 4.35
609 617 5.084818 TCATCTTGAGATTTACGAAGCCA 57.915 39.130 0.00 0.00 31.21 4.75
610 618 4.870426 TCATCTTGAGATTTACGAAGCCAC 59.130 41.667 0.00 0.00 31.21 5.01
611 619 3.596214 TCTTGAGATTTACGAAGCCACC 58.404 45.455 0.00 0.00 0.00 4.61
612 620 2.004583 TGAGATTTACGAAGCCACCG 57.995 50.000 0.00 0.00 0.00 4.94
613 621 1.274167 TGAGATTTACGAAGCCACCGT 59.726 47.619 0.00 0.00 43.26 4.83
614 622 2.492881 TGAGATTTACGAAGCCACCGTA 59.507 45.455 0.00 0.00 40.95 4.02
615 623 3.114065 GAGATTTACGAAGCCACCGTAG 58.886 50.000 0.00 0.00 42.42 3.51
628 636 2.099831 CGTAGGTGCCTCGTCGTC 59.900 66.667 0.00 0.00 0.00 4.20
629 637 2.099831 GTAGGTGCCTCGTCGTCG 59.900 66.667 0.00 0.00 38.55 5.12
630 638 2.046988 TAGGTGCCTCGTCGTCGA 60.047 61.111 4.42 4.42 44.12 4.20
631 639 2.393768 TAGGTGCCTCGTCGTCGAC 61.394 63.158 15.51 15.51 41.35 4.20
650 658 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
651 659 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
652 660 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
653 661 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
654 662 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
655 663 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
656 664 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
657 665 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
658 666 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
659 667 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
660 668 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
661 669 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
662 670 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
674 682 2.948093 CGCATCGCCAAAAATCCTG 58.052 52.632 0.00 0.00 0.00 3.86
675 683 0.451383 CGCATCGCCAAAAATCCTGA 59.549 50.000 0.00 0.00 0.00 3.86
676 684 1.135431 CGCATCGCCAAAAATCCTGAA 60.135 47.619 0.00 0.00 0.00 3.02
677 685 2.670789 CGCATCGCCAAAAATCCTGAAA 60.671 45.455 0.00 0.00 0.00 2.69
678 686 3.524541 GCATCGCCAAAAATCCTGAAAT 58.475 40.909 0.00 0.00 0.00 2.17
679 687 4.681744 GCATCGCCAAAAATCCTGAAATA 58.318 39.130 0.00 0.00 0.00 1.40
680 688 5.108517 GCATCGCCAAAAATCCTGAAATAA 58.891 37.500 0.00 0.00 0.00 1.40
681 689 5.580297 GCATCGCCAAAAATCCTGAAATAAA 59.420 36.000 0.00 0.00 0.00 1.40
682 690 6.258507 GCATCGCCAAAAATCCTGAAATAAAT 59.741 34.615 0.00 0.00 0.00 1.40
683 691 7.517259 GCATCGCCAAAAATCCTGAAATAAATC 60.517 37.037 0.00 0.00 0.00 2.17
684 692 6.337356 TCGCCAAAAATCCTGAAATAAATCC 58.663 36.000 0.00 0.00 0.00 3.01
685 693 6.071108 TCGCCAAAAATCCTGAAATAAATCCA 60.071 34.615 0.00 0.00 0.00 3.41
686 694 6.593382 CGCCAAAAATCCTGAAATAAATCCAA 59.407 34.615 0.00 0.00 0.00 3.53
687 695 7.118971 CGCCAAAAATCCTGAAATAAATCCAAA 59.881 33.333 0.00 0.00 0.00 3.28
688 696 8.791675 GCCAAAAATCCTGAAATAAATCCAAAA 58.208 29.630 0.00 0.00 0.00 2.44
696 704 9.311916 TCCTGAAATAAATCCAAAAATAATGCG 57.688 29.630 0.00 0.00 0.00 4.73
697 705 9.311916 CCTGAAATAAATCCAAAAATAATGCGA 57.688 29.630 0.00 0.00 0.00 5.10
699 707 8.816144 TGAAATAAATCCAAAAATAATGCGAGC 58.184 29.630 0.00 0.00 0.00 5.03
700 708 8.715191 AAATAAATCCAAAAATAATGCGAGCA 57.285 26.923 0.00 0.00 0.00 4.26
701 709 7.698836 ATAAATCCAAAAATAATGCGAGCAC 57.301 32.000 0.00 0.00 0.00 4.40
702 710 3.502191 TCCAAAAATAATGCGAGCACC 57.498 42.857 0.00 0.00 0.00 5.01
703 711 2.822561 TCCAAAAATAATGCGAGCACCA 59.177 40.909 0.00 0.00 0.00 4.17
704 712 3.119531 TCCAAAAATAATGCGAGCACCAG 60.120 43.478 0.00 0.00 0.00 4.00
705 713 3.119531 CCAAAAATAATGCGAGCACCAGA 60.120 43.478 0.00 0.00 0.00 3.86
706 714 4.484236 CAAAAATAATGCGAGCACCAGAA 58.516 39.130 0.00 0.00 0.00 3.02
707 715 4.989279 AAAATAATGCGAGCACCAGAAT 57.011 36.364 0.00 0.00 0.00 2.40
708 716 4.989279 AAATAATGCGAGCACCAGAATT 57.011 36.364 0.00 0.00 0.00 2.17
709 717 4.989279 AATAATGCGAGCACCAGAATTT 57.011 36.364 0.00 0.00 0.00 1.82
710 718 2.642139 AATGCGAGCACCAGAATTTG 57.358 45.000 0.00 0.00 0.00 2.32
711 719 1.825090 ATGCGAGCACCAGAATTTGA 58.175 45.000 0.00 0.00 0.00 2.69
712 720 1.603456 TGCGAGCACCAGAATTTGAA 58.397 45.000 0.00 0.00 0.00 2.69
713 721 1.266718 TGCGAGCACCAGAATTTGAAC 59.733 47.619 0.00 0.00 0.00 3.18
714 722 1.401539 GCGAGCACCAGAATTTGAACC 60.402 52.381 0.00 0.00 0.00 3.62
715 723 1.200020 CGAGCACCAGAATTTGAACCC 59.800 52.381 0.00 0.00 0.00 4.11
716 724 2.519013 GAGCACCAGAATTTGAACCCT 58.481 47.619 0.00 0.00 0.00 4.34
717 725 2.229784 GAGCACCAGAATTTGAACCCTG 59.770 50.000 0.00 0.00 0.00 4.45
721 729 1.895131 CCAGAATTTGAACCCTGGTGG 59.105 52.381 0.00 0.00 40.84 4.61
731 739 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
732 740 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
747 755 3.538634 GGATACCACTGTCCACCTAAC 57.461 52.381 0.00 0.00 34.57 2.34
748 756 2.169978 GGATACCACTGTCCACCTAACC 59.830 54.545 0.00 0.00 34.57 2.85
749 757 2.402182 TACCACTGTCCACCTAACCA 57.598 50.000 0.00 0.00 0.00 3.67
750 758 1.513858 ACCACTGTCCACCTAACCAA 58.486 50.000 0.00 0.00 0.00 3.67
751 759 1.142262 ACCACTGTCCACCTAACCAAC 59.858 52.381 0.00 0.00 0.00 3.77
752 760 1.420138 CCACTGTCCACCTAACCAACT 59.580 52.381 0.00 0.00 0.00 3.16
753 761 2.635915 CCACTGTCCACCTAACCAACTA 59.364 50.000 0.00 0.00 0.00 2.24
754 762 3.071892 CCACTGTCCACCTAACCAACTAA 59.928 47.826 0.00 0.00 0.00 2.24
755 763 4.445162 CCACTGTCCACCTAACCAACTAAA 60.445 45.833 0.00 0.00 0.00 1.85
756 764 5.313712 CACTGTCCACCTAACCAACTAAAT 58.686 41.667 0.00 0.00 0.00 1.40
757 765 5.411669 CACTGTCCACCTAACCAACTAAATC 59.588 44.000 0.00 0.00 0.00 2.17
758 766 5.072600 ACTGTCCACCTAACCAACTAAATCA 59.927 40.000 0.00 0.00 0.00 2.57
759 767 5.310451 TGTCCACCTAACCAACTAAATCAC 58.690 41.667 0.00 0.00 0.00 3.06
760 768 5.163184 TGTCCACCTAACCAACTAAATCACA 60.163 40.000 0.00 0.00 0.00 3.58
761 769 5.411669 GTCCACCTAACCAACTAAATCACAG 59.588 44.000 0.00 0.00 0.00 3.66
762 770 4.700213 CCACCTAACCAACTAAATCACAGG 59.300 45.833 0.00 0.00 0.00 4.00
763 771 5.313712 CACCTAACCAACTAAATCACAGGT 58.686 41.667 0.00 0.00 34.24 4.00
764 772 5.768164 CACCTAACCAACTAAATCACAGGTT 59.232 40.000 0.00 0.00 41.74 3.50
765 773 5.768164 ACCTAACCAACTAAATCACAGGTTG 59.232 40.000 0.00 0.00 39.49 3.77
766 774 6.001460 CCTAACCAACTAAATCACAGGTTGA 58.999 40.000 0.00 0.00 40.74 3.18
775 783 2.254546 TCACAGGTTGATTCGCAAGT 57.745 45.000 0.00 0.00 37.12 3.16
776 784 2.571212 TCACAGGTTGATTCGCAAGTT 58.429 42.857 0.00 0.00 37.12 2.66
777 785 2.948979 TCACAGGTTGATTCGCAAGTTT 59.051 40.909 0.00 0.00 37.12 2.66
778 786 3.380004 TCACAGGTTGATTCGCAAGTTTT 59.620 39.130 0.00 0.00 37.12 2.43
779 787 4.111916 CACAGGTTGATTCGCAAGTTTTT 58.888 39.130 0.00 0.00 37.12 1.94
780 788 4.026640 CACAGGTTGATTCGCAAGTTTTTG 60.027 41.667 0.00 0.00 37.12 2.44
781 789 4.111916 CAGGTTGATTCGCAAGTTTTTGT 58.888 39.130 0.00 0.00 37.12 2.83
782 790 4.566360 CAGGTTGATTCGCAAGTTTTTGTT 59.434 37.500 0.00 0.00 37.12 2.83
783 791 5.063312 CAGGTTGATTCGCAAGTTTTTGTTT 59.937 36.000 0.00 0.00 37.12 2.83
794 802 6.564873 CGCAAGTTTTTGTTTTGTTTTGAGGA 60.565 34.615 0.00 0.00 36.65 3.71
805 813 8.908903 TGTTTTGTTTTGAGGAGTGTATAATGT 58.091 29.630 0.00 0.00 0.00 2.71
809 817 7.870826 TGTTTTGAGGAGTGTATAATGTGTTG 58.129 34.615 0.00 0.00 0.00 3.33
939 1063 0.956633 AGCCGACGCGATAATCCTTA 59.043 50.000 15.93 0.00 41.18 2.69
948 1076 3.679980 CGCGATAATCCTTATGGGTCTTG 59.320 47.826 0.00 0.00 36.25 3.02
1230 1372 1.064296 CAGACGAGACGGGATTCGG 59.936 63.158 0.00 0.00 44.45 4.30
1392 1534 1.067199 CGTCCGAAACCGAGGTAACG 61.067 60.000 11.84 11.84 46.39 3.18
1393 1535 0.240945 GTCCGAAACCGAGGTAACGA 59.759 55.000 17.60 1.34 46.39 3.85
1409 1551 2.030401 CGAATTCACGAACCCCGCA 61.030 57.895 6.22 0.00 43.32 5.69
1574 1718 1.078709 CATCGCGGTCAATTCACACT 58.921 50.000 6.13 0.00 0.00 3.55
1619 1763 5.211174 AGTTAGAAGTTAGAACCGTGCTT 57.789 39.130 0.00 0.00 0.00 3.91
1625 1769 2.159014 AGTTAGAACCGTGCTTGTGTCA 60.159 45.455 0.00 0.00 0.00 3.58
1657 1812 4.766007 CATTCTAAGTGCATCGGAATTCG 58.234 43.478 0.00 0.00 40.90 3.34
1668 1823 7.173218 AGTGCATCGGAATTCGTGATTATTATT 59.827 33.333 8.61 0.00 40.32 1.40
1669 1824 7.803189 GTGCATCGGAATTCGTGATTATTATTT 59.197 33.333 8.61 0.00 40.32 1.40
1745 1900 2.136878 CGTGGGAGGATCAGGGAGG 61.137 68.421 0.00 0.00 36.25 4.30
1952 2107 4.378774 TGGTTGCTTTGATTGTGATTTGG 58.621 39.130 0.00 0.00 0.00 3.28
1953 2108 4.100653 TGGTTGCTTTGATTGTGATTTGGA 59.899 37.500 0.00 0.00 0.00 3.53
2008 2163 0.039326 AGGGAAAGCTCAAGCATGCT 59.961 50.000 16.30 16.30 45.16 3.79
2066 2221 7.865706 ATAAGTGGCTACAAGGTATTTTGAG 57.134 36.000 2.02 0.00 0.00 3.02
2095 2250 2.234300 ACCTTGTGTTGTACAGTCGG 57.766 50.000 0.00 0.00 41.10 4.79
2149 2304 5.847111 ACATGCGGTAGTACTTTATCTCA 57.153 39.130 0.00 0.00 0.00 3.27
2151 2306 4.644103 TGCGGTAGTACTTTATCTCACC 57.356 45.455 0.00 0.00 0.00 4.02
2154 2309 4.802563 GCGGTAGTACTTTATCTCACCAAC 59.197 45.833 0.00 0.00 0.00 3.77
2207 2362 5.997384 ACCCTCTTATTTAACAGTCGAGT 57.003 39.130 0.00 0.00 0.00 4.18
2208 2363 7.472334 AACCCTCTTATTTAACAGTCGAGTA 57.528 36.000 0.00 0.00 0.00 2.59
2227 2382 6.868339 TCGAGTACAATGTAAGCATCATATGG 59.132 38.462 2.13 0.00 33.50 2.74
2253 2408 7.174253 GGTTACTTCTGTTCACATTGACCAATA 59.826 37.037 0.00 0.00 0.00 1.90
2254 2409 8.564574 GTTACTTCTGTTCACATTGACCAATAA 58.435 33.333 0.00 0.00 0.00 1.40
2260 2415 7.119699 TCTGTTCACATTGACCAATAATCTGAC 59.880 37.037 0.00 0.00 0.00 3.51
2264 2419 9.460019 TTCACATTGACCAATAATCTGACAATA 57.540 29.630 0.00 0.00 0.00 1.90
2304 2459 1.201647 GCACTCAAGCATGCTGATTGT 59.798 47.619 23.48 14.78 43.57 2.71
2371 2526 2.718062 ACCATCAATATCCCATGGCTCA 59.282 45.455 6.09 0.00 40.85 4.26
2382 2537 3.117888 TCCCATGGCTCAGGAACTATTTC 60.118 47.826 6.09 0.00 36.02 2.17
2715 4171 4.889780 AGTGGGAGAACCTGAATCTAGAT 58.110 43.478 0.00 0.00 41.11 1.98
2743 4199 7.481642 AGATAAATCTTCTTTTGCTGATGCAG 58.518 34.615 0.00 0.00 41.66 4.41
2816 4272 7.974504 ACCCAGGTAAATATCGATGAGTATTT 58.025 34.615 8.54 8.51 35.39 1.40
2942 4399 6.524734 TGGTTCTGACATGCATACTATTAGG 58.475 40.000 0.00 0.00 0.00 2.69
2954 4411 1.687123 ACTATTAGGTAGCTGCCGTGG 59.313 52.381 15.76 10.02 33.47 4.94
2967 4424 1.271102 TGCCGTGGTTTAATTGCTTCC 59.729 47.619 0.00 0.00 0.00 3.46
3260 4718 3.572682 AGCTGCATAATCATCCAATGTGG 59.427 43.478 1.02 0.00 39.43 4.17
3337 4827 8.335532 CTGGAAAACAGGTGAATTACTATTCA 57.664 34.615 0.00 0.00 43.83 2.57
3371 4861 5.511386 AAACATCCTTCCAAGTCTGATCT 57.489 39.130 0.00 0.00 0.00 2.75
3374 4864 4.782156 ACATCCTTCCAAGTCTGATCTCTT 59.218 41.667 0.00 0.00 0.00 2.85
3393 4883 1.795768 TGGACATCTGCAAACGACTC 58.204 50.000 0.00 0.00 0.00 3.36
3402 4892 4.183865 TCTGCAAACGACTCATTGATAGG 58.816 43.478 0.00 0.00 0.00 2.57
3456 4947 8.654230 ATGTCATGCTAACAGTAGTTATTGAG 57.346 34.615 0.00 0.00 39.36 3.02
3465 4956 5.978814 ACAGTAGTTATTGAGATCACACCC 58.021 41.667 0.00 0.00 0.00 4.61
3478 4969 2.778299 TCACACCCCTCATCTTTTTCG 58.222 47.619 0.00 0.00 0.00 3.46
3492 4983 9.334693 CTCATCTTTTTCGAACCAAAGAATAAG 57.665 33.333 22.34 16.82 41.28 1.73
3660 5151 0.741221 GGTCATGGCGAGTGAACTCC 60.741 60.000 4.90 0.00 39.79 3.85
3842 5333 1.203287 CCTCTCACTGCGTTCTGATGA 59.797 52.381 0.00 0.00 0.00 2.92
3876 5367 9.914131 GCTTTTGTGTTCTTCCTTTCTAATATT 57.086 29.630 0.00 0.00 0.00 1.28
4213 5704 9.325198 TCGATAAATATAACTTTGTGAGCACAT 57.675 29.630 3.90 0.00 41.52 3.21
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.473796 CACAAAAATAAACTTGGCGTACTAAAC 58.526 33.333 0.00 0.00 0.00 2.01
41 42 1.741401 CCGCCGATGAAGAGCAACA 60.741 57.895 0.00 0.00 0.00 3.33
43 44 1.153568 CTCCGCCGATGAAGAGCAA 60.154 57.895 0.00 0.00 0.00 3.91
45 46 2.279784 CCTCCGCCGATGAAGAGC 60.280 66.667 0.00 0.00 0.00 4.09
56 57 1.166531 AGCAGAACAACAACCTCCGC 61.167 55.000 0.00 0.00 0.00 5.54
60 61 0.740737 GCACAGCAGAACAACAACCT 59.259 50.000 0.00 0.00 0.00 3.50
61 62 0.740737 AGCACAGCAGAACAACAACC 59.259 50.000 0.00 0.00 0.00 3.77
74 75 1.338200 GGTCCTACAGAACCAGCACAG 60.338 57.143 0.00 0.00 0.00 3.66
81 82 5.105064 TGTTATGCTAAGGTCCTACAGAACC 60.105 44.000 17.61 0.00 32.87 3.62
87 88 6.641474 AGAAGTTGTTATGCTAAGGTCCTAC 58.359 40.000 0.00 0.00 0.00 3.18
89 90 5.624738 CGAGAAGTTGTTATGCTAAGGTCCT 60.625 44.000 0.00 0.00 0.00 3.85
90 91 4.567159 CGAGAAGTTGTTATGCTAAGGTCC 59.433 45.833 0.00 0.00 0.00 4.46
93 94 6.313905 ACAATCGAGAAGTTGTTATGCTAAGG 59.686 38.462 0.00 0.00 35.13 2.69
102 103 7.272948 GTCGTAATAGACAATCGAGAAGTTGTT 59.727 37.037 3.79 0.00 38.57 2.83
105 106 6.849502 TGTCGTAATAGACAATCGAGAAGTT 58.150 36.000 0.00 0.00 46.81 2.66
126 127 3.426292 GCTAGAATCGGGCAAAACTTGTC 60.426 47.826 0.00 0.00 33.62 3.18
137 138 1.202698 CCCTTCCTTGCTAGAATCGGG 60.203 57.143 0.00 0.00 0.00 5.14
148 149 1.815421 CGTCATCGCCCCTTCCTTG 60.815 63.158 0.00 0.00 0.00 3.61
149 150 2.584608 CGTCATCGCCCCTTCCTT 59.415 61.111 0.00 0.00 0.00 3.36
248 249 1.470098 CTTGGCAGTACAATGAGCACC 59.530 52.381 0.00 0.00 0.00 5.01
255 256 6.182627 TCATCTTCAATCTTGGCAGTACAAT 58.817 36.000 0.00 0.00 0.00 2.71
280 281 5.668558 TTTGCGAGAAAACTTCCTTCTAC 57.331 39.130 0.00 0.00 33.24 2.59
330 338 8.765219 CGTATTATACTTCCCTCAACATGAAAG 58.235 37.037 0.00 0.00 0.00 2.62
397 405 8.530311 ACATGTGATAAGCAATCCAAACAATTA 58.470 29.630 0.00 0.00 33.22 1.40
398 406 7.332430 CACATGTGATAAGCAATCCAAACAATT 59.668 33.333 21.64 0.00 33.22 2.32
399 407 6.814644 CACATGTGATAAGCAATCCAAACAAT 59.185 34.615 21.64 0.00 33.22 2.71
400 408 6.157904 CACATGTGATAAGCAATCCAAACAA 58.842 36.000 21.64 0.00 33.22 2.83
401 409 5.243507 ACACATGTGATAAGCAATCCAAACA 59.756 36.000 31.94 0.00 33.22 2.83
402 410 5.713025 ACACATGTGATAAGCAATCCAAAC 58.287 37.500 31.94 0.00 33.22 2.93
403 411 5.476254 TGACACATGTGATAAGCAATCCAAA 59.524 36.000 31.94 0.00 33.22 3.28
404 412 5.008980 TGACACATGTGATAAGCAATCCAA 58.991 37.500 31.94 0.00 33.22 3.53
405 413 4.395854 GTGACACATGTGATAAGCAATCCA 59.604 41.667 31.94 10.04 33.22 3.41
406 414 4.494690 CGTGACACATGTGATAAGCAATCC 60.495 45.833 31.94 9.33 33.22 3.01
407 415 4.093408 ACGTGACACATGTGATAAGCAATC 59.907 41.667 31.94 16.13 31.87 2.67
408 416 4.002982 ACGTGACACATGTGATAAGCAAT 58.997 39.130 31.94 6.96 31.87 3.56
409 417 3.398406 ACGTGACACATGTGATAAGCAA 58.602 40.909 31.94 6.32 31.87 3.91
410 418 3.038788 ACGTGACACATGTGATAAGCA 57.961 42.857 31.94 16.96 31.87 3.91
418 426 2.902705 ACTTACCACGTGACACATGT 57.097 45.000 19.30 7.66 33.47 3.21
419 427 4.545823 AAAACTTACCACGTGACACATG 57.454 40.909 19.30 0.00 0.00 3.21
420 428 4.396790 ACAAAAACTTACCACGTGACACAT 59.603 37.500 19.30 0.00 0.00 3.21
421 429 3.752222 ACAAAAACTTACCACGTGACACA 59.248 39.130 19.30 0.00 0.00 3.72
422 430 4.345271 ACAAAAACTTACCACGTGACAC 57.655 40.909 19.30 0.00 0.00 3.67
423 431 4.696402 AGAACAAAAACTTACCACGTGACA 59.304 37.500 19.30 0.17 0.00 3.58
424 432 5.225899 AGAACAAAAACTTACCACGTGAC 57.774 39.130 19.30 0.00 0.00 3.67
425 433 5.883503 AAGAACAAAAACTTACCACGTGA 57.116 34.783 19.30 0.00 0.00 4.35
426 434 6.937886 AAAAGAACAAAAACTTACCACGTG 57.062 33.333 9.08 9.08 0.00 4.49
427 435 7.146648 TCAAAAAGAACAAAAACTTACCACGT 58.853 30.769 0.00 0.00 0.00 4.49
428 436 7.539366 TCTCAAAAAGAACAAAAACTTACCACG 59.461 33.333 0.00 0.00 0.00 4.94
429 437 8.751302 TCTCAAAAAGAACAAAAACTTACCAC 57.249 30.769 0.00 0.00 0.00 4.16
430 438 9.936759 ATTCTCAAAAAGAACAAAAACTTACCA 57.063 25.926 0.00 0.00 46.61 3.25
433 441 9.849166 ACGATTCTCAAAAAGAACAAAAACTTA 57.151 25.926 0.00 0.00 46.61 2.24
434 442 8.647226 CACGATTCTCAAAAAGAACAAAAACTT 58.353 29.630 0.00 0.00 46.61 2.66
435 443 7.812669 ACACGATTCTCAAAAAGAACAAAAACT 59.187 29.630 0.00 0.00 46.61 2.66
436 444 7.949186 ACACGATTCTCAAAAAGAACAAAAAC 58.051 30.769 0.00 0.00 46.61 2.43
437 445 9.627395 TTACACGATTCTCAAAAAGAACAAAAA 57.373 25.926 0.00 0.00 46.61 1.94
438 446 9.796120 ATTACACGATTCTCAAAAAGAACAAAA 57.204 25.926 0.00 0.00 46.61 2.44
439 447 9.232082 CATTACACGATTCTCAAAAAGAACAAA 57.768 29.630 0.00 0.00 46.61 2.83
440 448 7.378461 GCATTACACGATTCTCAAAAAGAACAA 59.622 33.333 0.00 0.00 46.61 2.83
441 449 6.855914 GCATTACACGATTCTCAAAAAGAACA 59.144 34.615 0.00 0.00 46.61 3.18
442 450 6.031417 CGCATTACACGATTCTCAAAAAGAAC 59.969 38.462 0.00 0.00 46.61 3.01
445 453 5.382303 ACGCATTACACGATTCTCAAAAAG 58.618 37.500 0.00 0.00 0.00 2.27
478 486 6.423905 GCTTGTGTCTGTACTGATACTCAAAA 59.576 38.462 23.42 12.67 32.00 2.44
482 490 4.099120 CGCTTGTGTCTGTACTGATACTC 58.901 47.826 23.42 14.53 32.00 2.59
483 491 3.673594 GCGCTTGTGTCTGTACTGATACT 60.674 47.826 23.42 0.00 32.00 2.12
484 492 2.599082 GCGCTTGTGTCTGTACTGATAC 59.401 50.000 18.65 18.65 0.00 2.24
485 493 2.492088 AGCGCTTGTGTCTGTACTGATA 59.508 45.455 2.64 0.15 0.00 2.15
486 494 1.273606 AGCGCTTGTGTCTGTACTGAT 59.726 47.619 2.64 0.00 0.00 2.90
487 495 0.673985 AGCGCTTGTGTCTGTACTGA 59.326 50.000 2.64 0.00 0.00 3.41
488 496 1.063806 GAGCGCTTGTGTCTGTACTG 58.936 55.000 13.26 0.00 0.00 2.74
489 497 0.673985 TGAGCGCTTGTGTCTGTACT 59.326 50.000 13.26 0.00 0.00 2.73
490 498 1.714794 ATGAGCGCTTGTGTCTGTAC 58.285 50.000 13.26 0.00 0.00 2.90
491 499 3.801114 ATATGAGCGCTTGTGTCTGTA 57.199 42.857 13.26 0.00 0.00 2.74
492 500 2.680312 ATATGAGCGCTTGTGTCTGT 57.320 45.000 13.26 0.00 0.00 3.41
493 501 3.243877 GTGTATATGAGCGCTTGTGTCTG 59.756 47.826 13.26 0.00 0.00 3.51
494 502 3.448686 GTGTATATGAGCGCTTGTGTCT 58.551 45.455 13.26 0.00 0.00 3.41
495 503 2.216488 CGTGTATATGAGCGCTTGTGTC 59.784 50.000 13.26 0.00 0.00 3.67
496 504 2.193447 CGTGTATATGAGCGCTTGTGT 58.807 47.619 13.26 4.27 0.00 3.72
497 505 2.034591 CACGTGTATATGAGCGCTTGTG 60.035 50.000 13.26 5.89 0.00 3.33
498 506 2.193447 CACGTGTATATGAGCGCTTGT 58.807 47.619 13.26 5.98 0.00 3.16
499 507 1.071239 GCACGTGTATATGAGCGCTTG 60.071 52.381 13.26 2.09 0.00 4.01
500 508 1.209128 GCACGTGTATATGAGCGCTT 58.791 50.000 13.26 0.00 0.00 4.68
501 509 0.102300 TGCACGTGTATATGAGCGCT 59.898 50.000 11.27 11.27 32.85 5.92
502 510 1.139989 ATGCACGTGTATATGAGCGC 58.860 50.000 18.03 0.00 32.85 5.92
503 511 3.305110 TGTATGCACGTGTATATGAGCG 58.695 45.455 25.81 0.00 32.85 5.03
504 512 5.405269 TGAATGTATGCACGTGTATATGAGC 59.595 40.000 25.81 15.09 0.00 4.26
505 513 7.201470 GGATGAATGTATGCACGTGTATATGAG 60.201 40.741 25.81 0.00 0.00 2.90
506 514 6.589907 GGATGAATGTATGCACGTGTATATGA 59.410 38.462 25.81 17.13 0.00 2.15
507 515 6.183360 GGGATGAATGTATGCACGTGTATATG 60.183 42.308 25.81 0.00 0.00 1.78
508 516 5.874810 GGGATGAATGTATGCACGTGTATAT 59.125 40.000 25.81 12.84 0.00 0.86
509 517 5.011635 AGGGATGAATGTATGCACGTGTATA 59.988 40.000 20.58 20.58 0.00 1.47
510 518 4.065088 GGGATGAATGTATGCACGTGTAT 58.935 43.478 22.72 22.72 0.00 2.29
511 519 3.133901 AGGGATGAATGTATGCACGTGTA 59.866 43.478 18.38 14.09 0.00 2.90
512 520 2.092968 AGGGATGAATGTATGCACGTGT 60.093 45.455 18.38 0.00 0.00 4.49
513 521 2.564771 AGGGATGAATGTATGCACGTG 58.435 47.619 12.28 12.28 0.00 4.49
514 522 4.040339 TCATAGGGATGAATGTATGCACGT 59.960 41.667 0.00 0.00 39.20 4.49
515 523 4.568956 TCATAGGGATGAATGTATGCACG 58.431 43.478 0.00 0.00 39.20 5.34
526 534 1.552792 TGTGTGCGTTCATAGGGATGA 59.447 47.619 0.00 0.00 40.45 2.92
527 535 1.665679 GTGTGTGCGTTCATAGGGATG 59.334 52.381 0.00 0.00 0.00 3.51
528 536 1.739035 CGTGTGTGCGTTCATAGGGAT 60.739 52.381 0.00 0.00 0.00 3.85
529 537 0.389296 CGTGTGTGCGTTCATAGGGA 60.389 55.000 0.00 0.00 0.00 4.20
530 538 1.966493 GCGTGTGTGCGTTCATAGGG 61.966 60.000 0.00 0.00 0.00 3.53
531 539 1.288419 TGCGTGTGTGCGTTCATAGG 61.288 55.000 0.00 0.00 37.81 2.57
532 540 0.179250 GTGCGTGTGTGCGTTCATAG 60.179 55.000 0.00 0.00 37.81 2.23
533 541 0.876342 TGTGCGTGTGTGCGTTCATA 60.876 50.000 0.00 0.00 37.81 2.15
534 542 2.176926 TGTGCGTGTGTGCGTTCAT 61.177 52.632 0.00 0.00 37.81 2.57
535 543 2.815647 TGTGCGTGTGTGCGTTCA 60.816 55.556 0.00 0.00 37.81 3.18
536 544 2.350760 GTGTGCGTGTGTGCGTTC 60.351 61.111 0.00 0.00 37.81 3.95
537 545 3.871574 GGTGTGCGTGTGTGCGTT 61.872 61.111 0.00 0.00 37.81 4.84
540 548 1.635663 GATAGGGTGTGCGTGTGTGC 61.636 60.000 0.00 0.00 0.00 4.57
541 549 1.019278 GGATAGGGTGTGCGTGTGTG 61.019 60.000 0.00 0.00 0.00 3.82
542 550 1.295423 GGATAGGGTGTGCGTGTGT 59.705 57.895 0.00 0.00 0.00 3.72
543 551 1.449601 GGGATAGGGTGTGCGTGTG 60.450 63.158 0.00 0.00 0.00 3.82
544 552 0.324923 TAGGGATAGGGTGTGCGTGT 60.325 55.000 0.00 0.00 0.00 4.49
545 553 1.048601 ATAGGGATAGGGTGTGCGTG 58.951 55.000 0.00 0.00 0.00 5.34
546 554 1.048601 CATAGGGATAGGGTGTGCGT 58.951 55.000 0.00 0.00 0.00 5.24
547 555 1.273606 CTCATAGGGATAGGGTGTGCG 59.726 57.143 0.00 0.00 0.00 5.34
548 556 1.002544 GCTCATAGGGATAGGGTGTGC 59.997 57.143 0.00 0.00 0.00 4.57
549 557 2.301296 CTGCTCATAGGGATAGGGTGTG 59.699 54.545 0.00 0.00 0.00 3.82
550 558 2.180086 TCTGCTCATAGGGATAGGGTGT 59.820 50.000 0.00 0.00 0.00 4.16
551 559 2.830923 CTCTGCTCATAGGGATAGGGTG 59.169 54.545 0.00 0.00 0.00 4.61
552 560 2.724672 TCTCTGCTCATAGGGATAGGGT 59.275 50.000 0.00 0.00 0.00 4.34
553 561 3.096092 GTCTCTGCTCATAGGGATAGGG 58.904 54.545 0.00 0.00 28.22 3.53
554 562 3.763360 CAGTCTCTGCTCATAGGGATAGG 59.237 52.174 0.00 0.00 28.22 2.57
555 563 4.661222 TCAGTCTCTGCTCATAGGGATAG 58.339 47.826 0.00 0.00 28.22 2.08
556 564 4.661222 CTCAGTCTCTGCTCATAGGGATA 58.339 47.826 0.00 0.00 28.22 2.59
557 565 3.499338 CTCAGTCTCTGCTCATAGGGAT 58.501 50.000 0.00 0.00 28.22 3.85
558 566 2.942804 CTCAGTCTCTGCTCATAGGGA 58.057 52.381 0.00 0.00 0.00 4.20
559 567 1.340889 GCTCAGTCTCTGCTCATAGGG 59.659 57.143 0.00 0.00 0.00 3.53
560 568 1.340889 GGCTCAGTCTCTGCTCATAGG 59.659 57.143 0.00 0.00 0.00 2.57
561 569 1.001487 CGGCTCAGTCTCTGCTCATAG 60.001 57.143 0.00 0.00 0.00 2.23
562 570 1.028130 CGGCTCAGTCTCTGCTCATA 58.972 55.000 0.00 0.00 0.00 2.15
563 571 1.674764 CCGGCTCAGTCTCTGCTCAT 61.675 60.000 0.00 0.00 0.00 2.90
564 572 2.346541 CCGGCTCAGTCTCTGCTCA 61.347 63.158 0.00 0.00 0.00 4.26
565 573 2.493973 CCGGCTCAGTCTCTGCTC 59.506 66.667 0.00 0.00 0.00 4.26
566 574 3.768922 GCCGGCTCAGTCTCTGCT 61.769 66.667 22.15 0.00 0.00 4.24
567 575 2.021068 TATGCCGGCTCAGTCTCTGC 62.021 60.000 29.70 0.00 0.00 4.26
568 576 0.678395 ATATGCCGGCTCAGTCTCTG 59.322 55.000 29.70 0.00 0.00 3.35
569 577 0.965439 GATATGCCGGCTCAGTCTCT 59.035 55.000 29.70 3.16 0.00 3.10
570 578 0.676184 TGATATGCCGGCTCAGTCTC 59.324 55.000 29.70 15.31 0.00 3.36
571 579 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
572 580 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
573 581 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
574 582 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
575 583 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
576 584 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
577 585 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
578 586 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
579 587 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
580 588 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
581 589 7.623089 GCTTCGTAAATCTCAAGATGATATGCC 60.623 40.741 0.00 0.00 34.49 4.40
582 590 7.232994 GCTTCGTAAATCTCAAGATGATATGC 58.767 38.462 0.00 0.00 34.49 3.14
583 591 7.386025 TGGCTTCGTAAATCTCAAGATGATATG 59.614 37.037 0.00 0.00 34.49 1.78
584 592 7.386299 GTGGCTTCGTAAATCTCAAGATGATAT 59.614 37.037 0.00 0.00 34.49 1.63
585 593 6.701841 GTGGCTTCGTAAATCTCAAGATGATA 59.298 38.462 0.00 0.00 34.49 2.15
586 594 5.525378 GTGGCTTCGTAAATCTCAAGATGAT 59.475 40.000 0.00 0.00 34.49 2.45
587 595 4.870426 GTGGCTTCGTAAATCTCAAGATGA 59.130 41.667 0.00 0.00 34.49 2.92
588 596 4.034510 GGTGGCTTCGTAAATCTCAAGATG 59.965 45.833 0.00 0.00 34.49 2.90
589 597 4.192317 GGTGGCTTCGTAAATCTCAAGAT 58.808 43.478 0.00 0.00 36.07 2.40
590 598 3.596214 GGTGGCTTCGTAAATCTCAAGA 58.404 45.455 0.00 0.00 0.00 3.02
591 599 2.348666 CGGTGGCTTCGTAAATCTCAAG 59.651 50.000 0.00 0.00 0.00 3.02
592 600 2.289195 ACGGTGGCTTCGTAAATCTCAA 60.289 45.455 4.10 0.00 39.22 3.02
593 601 1.274167 ACGGTGGCTTCGTAAATCTCA 59.726 47.619 4.10 0.00 39.22 3.27
594 602 2.005971 ACGGTGGCTTCGTAAATCTC 57.994 50.000 4.10 0.00 39.22 2.75
595 603 2.159142 CCTACGGTGGCTTCGTAAATCT 60.159 50.000 12.25 0.00 41.62 2.40
596 604 2.199236 CCTACGGTGGCTTCGTAAATC 58.801 52.381 12.25 0.00 41.62 2.17
597 605 1.551883 ACCTACGGTGGCTTCGTAAAT 59.448 47.619 12.25 3.47 41.62 1.40
598 606 0.968405 ACCTACGGTGGCTTCGTAAA 59.032 50.000 12.25 0.00 41.62 2.01
599 607 2.657297 ACCTACGGTGGCTTCGTAA 58.343 52.632 12.25 0.76 41.62 3.18
600 608 4.421365 ACCTACGGTGGCTTCGTA 57.579 55.556 11.10 11.10 41.38 3.43
609 617 3.437795 CGACGAGGCACCTACGGT 61.438 66.667 11.43 1.54 35.62 4.83
610 618 3.392595 GACGACGAGGCACCTACGG 62.393 68.421 0.00 0.00 0.00 4.02
611 619 2.099831 GACGACGAGGCACCTACG 59.900 66.667 0.00 8.24 0.00 3.51
612 620 2.099831 CGACGACGAGGCACCTAC 59.900 66.667 0.00 0.00 42.66 3.18
613 621 2.046988 TCGACGACGAGGCACCTA 60.047 61.111 5.75 0.00 43.81 3.08
634 642 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
635 643 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
636 644 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
637 645 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
638 646 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
639 647 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
640 648 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
641 649 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
642 650 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
643 651 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
644 652 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
645 653 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
656 664 0.451383 TCAGGATTTTTGGCGATGCG 59.549 50.000 0.00 0.00 0.00 4.73
657 665 2.652941 TTCAGGATTTTTGGCGATGC 57.347 45.000 0.00 0.00 0.00 3.91
658 666 7.042523 GGATTTATTTCAGGATTTTTGGCGATG 60.043 37.037 0.00 0.00 0.00 3.84
659 667 6.986231 GGATTTATTTCAGGATTTTTGGCGAT 59.014 34.615 0.00 0.00 0.00 4.58
660 668 6.071108 TGGATTTATTTCAGGATTTTTGGCGA 60.071 34.615 0.00 0.00 0.00 5.54
661 669 6.105333 TGGATTTATTTCAGGATTTTTGGCG 58.895 36.000 0.00 0.00 0.00 5.69
662 670 7.920160 TTGGATTTATTTCAGGATTTTTGGC 57.080 32.000 0.00 0.00 0.00 4.52
670 678 9.311916 CGCATTATTTTTGGATTTATTTCAGGA 57.688 29.630 0.00 0.00 0.00 3.86
671 679 9.311916 TCGCATTATTTTTGGATTTATTTCAGG 57.688 29.630 0.00 0.00 0.00 3.86
673 681 8.816144 GCTCGCATTATTTTTGGATTTATTTCA 58.184 29.630 0.00 0.00 0.00 2.69
674 682 8.816144 TGCTCGCATTATTTTTGGATTTATTTC 58.184 29.630 0.00 0.00 0.00 2.17
675 683 8.603181 GTGCTCGCATTATTTTTGGATTTATTT 58.397 29.630 0.00 0.00 0.00 1.40
676 684 7.224557 GGTGCTCGCATTATTTTTGGATTTATT 59.775 33.333 0.00 0.00 0.00 1.40
677 685 6.701400 GGTGCTCGCATTATTTTTGGATTTAT 59.299 34.615 0.00 0.00 0.00 1.40
678 686 6.039616 GGTGCTCGCATTATTTTTGGATTTA 58.960 36.000 0.00 0.00 0.00 1.40
679 687 4.869861 GGTGCTCGCATTATTTTTGGATTT 59.130 37.500 0.00 0.00 0.00 2.17
680 688 4.081752 TGGTGCTCGCATTATTTTTGGATT 60.082 37.500 0.00 0.00 0.00 3.01
681 689 3.446873 TGGTGCTCGCATTATTTTTGGAT 59.553 39.130 0.00 0.00 0.00 3.41
682 690 2.822561 TGGTGCTCGCATTATTTTTGGA 59.177 40.909 0.00 0.00 0.00 3.53
683 691 3.119531 TCTGGTGCTCGCATTATTTTTGG 60.120 43.478 0.00 0.00 0.00 3.28
684 692 4.095410 TCTGGTGCTCGCATTATTTTTG 57.905 40.909 0.00 0.00 0.00 2.44
685 693 4.782019 TTCTGGTGCTCGCATTATTTTT 57.218 36.364 0.00 0.00 0.00 1.94
686 694 4.989279 ATTCTGGTGCTCGCATTATTTT 57.011 36.364 0.00 0.00 0.00 1.82
687 695 4.989279 AATTCTGGTGCTCGCATTATTT 57.011 36.364 0.00 0.00 0.00 1.40
688 696 4.398988 TCAAATTCTGGTGCTCGCATTATT 59.601 37.500 0.00 0.00 0.00 1.40
689 697 3.947196 TCAAATTCTGGTGCTCGCATTAT 59.053 39.130 0.00 0.00 0.00 1.28
690 698 3.342719 TCAAATTCTGGTGCTCGCATTA 58.657 40.909 0.00 0.00 0.00 1.90
691 699 2.161855 TCAAATTCTGGTGCTCGCATT 58.838 42.857 0.00 0.00 0.00 3.56
692 700 1.825090 TCAAATTCTGGTGCTCGCAT 58.175 45.000 0.00 0.00 0.00 4.73
693 701 1.266718 GTTCAAATTCTGGTGCTCGCA 59.733 47.619 0.00 0.00 0.00 5.10
694 702 1.401539 GGTTCAAATTCTGGTGCTCGC 60.402 52.381 0.00 0.00 0.00 5.03
695 703 1.200020 GGGTTCAAATTCTGGTGCTCG 59.800 52.381 0.00 0.00 0.00 5.03
696 704 2.229784 CAGGGTTCAAATTCTGGTGCTC 59.770 50.000 0.00 0.00 0.00 4.26
697 705 2.242043 CAGGGTTCAAATTCTGGTGCT 58.758 47.619 0.00 0.00 0.00 4.40
698 706 1.273327 CCAGGGTTCAAATTCTGGTGC 59.727 52.381 0.00 0.00 41.21 5.01
714 722 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
715 723 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
716 724 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
717 725 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
724 732 0.912487 GGTGGACAGTGGTATCCCCA 60.912 60.000 0.00 0.00 42.51 4.96
725 733 0.620700 AGGTGGACAGTGGTATCCCC 60.621 60.000 0.00 0.00 33.69 4.81
726 734 2.169978 GTTAGGTGGACAGTGGTATCCC 59.830 54.545 0.00 0.00 33.69 3.85
727 735 2.169978 GGTTAGGTGGACAGTGGTATCC 59.830 54.545 0.00 0.00 35.37 2.59
728 736 2.835764 TGGTTAGGTGGACAGTGGTATC 59.164 50.000 0.00 0.00 0.00 2.24
729 737 2.910544 TGGTTAGGTGGACAGTGGTAT 58.089 47.619 0.00 0.00 0.00 2.73
730 738 2.369532 GTTGGTTAGGTGGACAGTGGTA 59.630 50.000 0.00 0.00 0.00 3.25
731 739 1.142262 GTTGGTTAGGTGGACAGTGGT 59.858 52.381 0.00 0.00 0.00 4.16
732 740 1.420138 AGTTGGTTAGGTGGACAGTGG 59.580 52.381 0.00 0.00 0.00 4.00
733 741 2.930826 AGTTGGTTAGGTGGACAGTG 57.069 50.000 0.00 0.00 0.00 3.66
734 742 5.072600 TGATTTAGTTGGTTAGGTGGACAGT 59.927 40.000 0.00 0.00 0.00 3.55
735 743 5.411669 GTGATTTAGTTGGTTAGGTGGACAG 59.588 44.000 0.00 0.00 0.00 3.51
736 744 5.163184 TGTGATTTAGTTGGTTAGGTGGACA 60.163 40.000 0.00 0.00 0.00 4.02
737 745 5.310451 TGTGATTTAGTTGGTTAGGTGGAC 58.690 41.667 0.00 0.00 0.00 4.02
738 746 5.514136 CCTGTGATTTAGTTGGTTAGGTGGA 60.514 44.000 0.00 0.00 0.00 4.02
739 747 4.700213 CCTGTGATTTAGTTGGTTAGGTGG 59.300 45.833 0.00 0.00 0.00 4.61
740 748 5.313712 ACCTGTGATTTAGTTGGTTAGGTG 58.686 41.667 0.00 0.00 34.91 4.00
741 749 5.578157 ACCTGTGATTTAGTTGGTTAGGT 57.422 39.130 0.00 0.00 0.00 3.08
742 750 6.001460 TCAACCTGTGATTTAGTTGGTTAGG 58.999 40.000 0.00 0.00 39.98 2.69
743 751 7.687941 ATCAACCTGTGATTTAGTTGGTTAG 57.312 36.000 0.00 0.00 45.13 2.34
756 764 2.254546 ACTTGCGAATCAACCTGTGA 57.745 45.000 0.00 0.00 41.67 3.58
757 765 3.354089 AAACTTGCGAATCAACCTGTG 57.646 42.857 0.00 0.00 0.00 3.66
758 766 4.111916 CAAAAACTTGCGAATCAACCTGT 58.888 39.130 0.00 0.00 0.00 4.00
759 767 4.111916 ACAAAAACTTGCGAATCAACCTG 58.888 39.130 0.00 0.00 0.00 4.00
760 768 4.385358 ACAAAAACTTGCGAATCAACCT 57.615 36.364 0.00 0.00 0.00 3.50
761 769 5.463499 AAACAAAAACTTGCGAATCAACC 57.537 34.783 0.00 0.00 0.00 3.77
762 770 6.303370 ACAAAACAAAAACTTGCGAATCAAC 58.697 32.000 0.00 0.00 0.00 3.18
763 771 6.473397 ACAAAACAAAAACTTGCGAATCAA 57.527 29.167 0.00 0.00 0.00 2.57
764 772 6.473397 AACAAAACAAAAACTTGCGAATCA 57.527 29.167 0.00 0.00 0.00 2.57
765 773 7.532209 TCAAAACAAAACAAAAACTTGCGAATC 59.468 29.630 0.00 0.00 0.00 2.52
766 774 7.355778 TCAAAACAAAACAAAAACTTGCGAAT 58.644 26.923 0.00 0.00 0.00 3.34
767 775 6.715464 TCAAAACAAAACAAAAACTTGCGAA 58.285 28.000 0.00 0.00 0.00 4.70
768 776 6.287107 TCAAAACAAAACAAAAACTTGCGA 57.713 29.167 0.00 0.00 0.00 5.10
769 777 5.563374 CCTCAAAACAAAACAAAAACTTGCG 59.437 36.000 0.00 0.00 0.00 4.85
770 778 6.663565 TCCTCAAAACAAAACAAAAACTTGC 58.336 32.000 0.00 0.00 0.00 4.01
771 779 7.798052 CACTCCTCAAAACAAAACAAAAACTTG 59.202 33.333 0.00 0.00 0.00 3.16
772 780 7.497579 ACACTCCTCAAAACAAAACAAAAACTT 59.502 29.630 0.00 0.00 0.00 2.66
773 781 6.989759 ACACTCCTCAAAACAAAACAAAAACT 59.010 30.769 0.00 0.00 0.00 2.66
774 782 7.184800 ACACTCCTCAAAACAAAACAAAAAC 57.815 32.000 0.00 0.00 0.00 2.43
778 786 9.743057 CATTATACACTCCTCAAAACAAAACAA 57.257 29.630 0.00 0.00 0.00 2.83
779 787 8.908903 ACATTATACACTCCTCAAAACAAAACA 58.091 29.630 0.00 0.00 0.00 2.83
780 788 9.180678 CACATTATACACTCCTCAAAACAAAAC 57.819 33.333 0.00 0.00 0.00 2.43
781 789 8.908903 ACACATTATACACTCCTCAAAACAAAA 58.091 29.630 0.00 0.00 0.00 2.44
782 790 8.458573 ACACATTATACACTCCTCAAAACAAA 57.541 30.769 0.00 0.00 0.00 2.83
783 791 8.349245 CAACACATTATACACTCCTCAAAACAA 58.651 33.333 0.00 0.00 0.00 2.83
875 893 4.838486 CGTCGTGGGCTCGAGCTC 62.838 72.222 34.46 32.66 43.24 4.09
939 1063 1.522569 GCCGTAGAGCAAGACCCAT 59.477 57.895 0.00 0.00 0.00 4.00
1176 1304 4.016706 AAGAAGGACGGTGGCGGG 62.017 66.667 0.00 0.00 0.00 6.13
1230 1372 2.096713 CACGAGCTTGTGAGTTGTTAGC 60.097 50.000 27.35 0.00 42.55 3.09
1392 1534 0.953960 AGTGCGGGGTTCGTGAATTC 60.954 55.000 0.00 0.00 41.72 2.17
1393 1535 0.953960 GAGTGCGGGGTTCGTGAATT 60.954 55.000 0.00 0.00 41.72 2.17
1414 1556 1.134694 GTTGAAATCTCGCCCGTGC 59.865 57.895 0.00 0.00 0.00 5.34
1421 1563 1.464687 CGCCAAGCAGTTGAAATCTCG 60.465 52.381 0.00 0.00 35.46 4.04
1574 1718 2.097036 CTCATTGATGCTTTCCCTGCA 58.903 47.619 0.00 0.00 44.95 4.41
1619 1763 4.011966 AGAATGCACTTGAGATGACACA 57.988 40.909 0.00 0.00 0.00 3.72
1668 1823 5.134339 AGCCCCAATTAGATACAGGAATCAA 59.866 40.000 0.00 0.00 0.00 2.57
1669 1824 4.665009 AGCCCCAATTAGATACAGGAATCA 59.335 41.667 0.00 0.00 0.00 2.57
1745 1900 2.328099 CGCTCACCCCAAGCTTGAC 61.328 63.158 28.05 6.82 37.62 3.18
1952 2107 0.682209 AGCCATTGTCACCCAGCATC 60.682 55.000 0.00 0.00 0.00 3.91
1953 2108 0.968901 CAGCCATTGTCACCCAGCAT 60.969 55.000 0.00 0.00 0.00 3.79
2008 2163 1.134007 CCTGGATGGCTGCTGACAATA 60.134 52.381 2.14 0.00 33.27 1.90
2066 2221 8.780249 ACTGTACAACACAAGGTATTAAATCAC 58.220 33.333 0.00 0.00 36.48 3.06
2095 2250 8.837788 AAGACCAAAAATCATTTTCCTTCATC 57.162 30.769 0.00 0.00 36.62 2.92
2149 2304 7.654022 TTCAGGTAATTCTTTTTCTGTTGGT 57.346 32.000 0.00 0.00 0.00 3.67
2151 2306 9.918630 ATGATTCAGGTAATTCTTTTTCTGTTG 57.081 29.630 0.00 0.00 0.00 3.33
2207 2362 8.436778 AGTAACCCATATGATGCTTACATTGTA 58.563 33.333 3.65 0.00 36.35 2.41
2208 2363 7.290061 AGTAACCCATATGATGCTTACATTGT 58.710 34.615 3.65 0.00 36.35 2.71
2227 2382 4.819630 TGGTCAATGTGAACAGAAGTAACC 59.180 41.667 0.00 0.00 39.52 2.85
2253 2408 8.454106 GCAGTTGTGTAAAGATATTGTCAGATT 58.546 33.333 0.00 0.00 0.00 2.40
2254 2409 7.607607 TGCAGTTGTGTAAAGATATTGTCAGAT 59.392 33.333 0.00 0.00 0.00 2.90
2260 2415 6.306356 GCTGTTGCAGTTGTGTAAAGATATTG 59.694 38.462 0.00 0.00 39.41 1.90
2264 2419 3.631686 TGCTGTTGCAGTTGTGTAAAGAT 59.368 39.130 0.00 0.00 45.31 2.40
2510 2934 1.992557 TCAAAACTAGCCTGGGACCAT 59.007 47.619 0.00 0.00 0.00 3.55
2585 4039 2.401583 AATAGAGGTGCATGCGTCAA 57.598 45.000 14.09 0.00 0.00 3.18
2589 4043 1.600957 CCTGAAATAGAGGTGCATGCG 59.399 52.381 14.09 0.00 0.00 4.73
2715 4171 7.415989 GCATCAGCAAAAGAAGATTTATCTCCA 60.416 37.037 0.00 0.00 41.58 3.86
2743 4199 1.603739 GGCAACTCCTGGTGGGAAC 60.604 63.158 0.33 0.00 44.58 3.62
2905 4362 4.161333 GTCAGAACCAAGAATTTGATGCG 58.839 43.478 0.00 0.00 36.36 4.73
2911 4368 5.733620 ATGCATGTCAGAACCAAGAATTT 57.266 34.783 0.00 0.00 0.00 1.82
2942 4399 2.731027 GCAATTAAACCACGGCAGCTAC 60.731 50.000 0.00 0.00 0.00 3.58
2954 4411 8.495148 CACACAAATAAAGGGAAGCAATTAAAC 58.505 33.333 0.00 0.00 0.00 2.01
2967 4424 7.220683 CGATAAAATCCTGCACACAAATAAAGG 59.779 37.037 0.00 0.00 0.00 3.11
3260 4718 0.966920 TCCTTCTCTGACCCGTGTTC 59.033 55.000 0.00 0.00 0.00 3.18
3308 4766 7.074653 AGTAATTCACCTGTTTTCCAGACTA 57.925 36.000 0.00 0.00 44.49 2.59
3341 4831 9.401058 CAGACTTGGAAGGATGTTTAATCTATT 57.599 33.333 0.00 0.00 0.00 1.73
3342 4832 8.772250 TCAGACTTGGAAGGATGTTTAATCTAT 58.228 33.333 0.00 0.00 0.00 1.98
3343 4833 8.146053 TCAGACTTGGAAGGATGTTTAATCTA 57.854 34.615 0.00 0.00 0.00 1.98
3344 4834 7.020827 TCAGACTTGGAAGGATGTTTAATCT 57.979 36.000 0.00 0.00 0.00 2.40
3345 4835 7.772757 AGATCAGACTTGGAAGGATGTTTAATC 59.227 37.037 0.00 0.00 0.00 1.75
3346 4836 7.637511 AGATCAGACTTGGAAGGATGTTTAAT 58.362 34.615 0.00 0.00 0.00 1.40
3347 4837 7.020827 AGATCAGACTTGGAAGGATGTTTAA 57.979 36.000 0.00 0.00 0.00 1.52
3348 4838 6.441924 AGAGATCAGACTTGGAAGGATGTTTA 59.558 38.462 0.00 0.00 0.00 2.01
3349 4839 5.250313 AGAGATCAGACTTGGAAGGATGTTT 59.750 40.000 0.00 0.00 0.00 2.83
3350 4840 4.782156 AGAGATCAGACTTGGAAGGATGTT 59.218 41.667 0.00 0.00 0.00 2.71
3351 4841 4.360889 AGAGATCAGACTTGGAAGGATGT 58.639 43.478 0.00 0.00 0.00 3.06
3352 4842 5.117584 CAAGAGATCAGACTTGGAAGGATG 58.882 45.833 14.97 0.00 39.52 3.51
3353 4843 5.356291 CAAGAGATCAGACTTGGAAGGAT 57.644 43.478 14.97 0.00 39.52 3.24
3354 4844 4.815533 CAAGAGATCAGACTTGGAAGGA 57.184 45.455 14.97 0.00 39.52 3.36
3360 4850 5.110598 CAGATGTCCAAGAGATCAGACTTG 58.889 45.833 15.50 15.50 41.85 3.16
3361 4851 4.382901 GCAGATGTCCAAGAGATCAGACTT 60.383 45.833 4.76 0.00 35.21 3.01
3362 4852 3.132646 GCAGATGTCCAAGAGATCAGACT 59.867 47.826 4.76 0.00 35.21 3.24
3363 4853 3.118847 TGCAGATGTCCAAGAGATCAGAC 60.119 47.826 4.76 0.00 35.21 3.51
3371 4861 2.143122 GTCGTTTGCAGATGTCCAAGA 58.857 47.619 0.00 0.00 0.00 3.02
3374 4864 1.069978 TGAGTCGTTTGCAGATGTCCA 59.930 47.619 0.00 0.00 0.00 4.02
3418 4908 7.609918 TGTTAGCATGACATACATTTAGGTGTT 59.390 33.333 0.00 0.00 37.07 3.32
3419 4909 7.109501 TGTTAGCATGACATACATTTAGGTGT 58.890 34.615 0.00 0.00 37.07 4.16
3433 4923 8.879342 ATCTCAATAACTACTGTTAGCATGAC 57.121 34.615 0.00 0.00 41.33 3.06
3456 4947 3.375299 CGAAAAAGATGAGGGGTGTGATC 59.625 47.826 0.00 0.00 0.00 2.92
3465 4956 5.689383 TCTTTGGTTCGAAAAAGATGAGG 57.311 39.130 17.16 0.00 37.46 3.86
3510 5001 5.111989 TCAAAGCAGCAGTGTATAGATCAC 58.888 41.667 0.00 0.00 36.22 3.06
3660 5151 4.640364 TGGAAAGGGCTGCAAATTTTAAG 58.360 39.130 0.50 0.00 0.00 1.85
3842 5333 5.537674 AGGAAGAACACAAAAGCAGATCAAT 59.462 36.000 0.00 0.00 0.00 2.57
3876 5367 4.467438 TCATTCAAGACTGATACAGCCTCA 59.533 41.667 0.00 0.00 34.37 3.86
3879 5370 4.125703 CCTCATTCAAGACTGATACAGCC 58.874 47.826 0.00 0.00 34.37 4.85
4213 5704 8.637986 AGCAAAACCATCTTTCTGTAAATAACA 58.362 29.630 0.00 0.00 36.42 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.