Multiple sequence alignment - TraesCS1B01G191800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G191800 chr1B 100.000 6215 0 0 1 6215 342977850 342971636 0.000000e+00 11478.0
1 TraesCS1B01G191800 chr1B 91.525 118 6 2 2994 3107 643121386 643121269 6.450000e-35 159.0
2 TraesCS1B01G191800 chr1D 93.693 3076 96 32 1 3005 269731021 269727973 0.000000e+00 4516.0
3 TraesCS1B01G191800 chr1D 90.721 2996 126 69 3109 6014 269727974 269725041 0.000000e+00 3853.0
4 TraesCS1B01G191800 chr1A 90.941 3102 151 59 3109 6140 333137146 333134105 0.000000e+00 4052.0
5 TraesCS1B01G191800 chr1A 91.085 3096 123 64 8 2999 333140206 333137160 0.000000e+00 4047.0
6 TraesCS1B01G191800 chr1A 92.373 118 5 2 3004 3118 523010056 523010172 1.390000e-36 165.0
7 TraesCS1B01G191800 chr1A 97.561 41 1 0 6175 6215 332972741 332972701 3.110000e-08 71.3
8 TraesCS1B01G191800 chr6B 95.413 109 2 1 3004 3109 224863386 224863494 2.980000e-38 171.0
9 TraesCS1B01G191800 chr6A 94.495 109 3 1 3003 3108 472946915 472946807 1.390000e-36 165.0
10 TraesCS1B01G191800 chr2B 94.495 109 3 1 3002 3107 180426733 180426625 1.390000e-36 165.0
11 TraesCS1B01G191800 chr2B 92.157 51 4 0 6039 6089 29019160 29019210 8.640000e-09 73.1
12 TraesCS1B01G191800 chr2B 86.667 60 7 1 6031 6090 15097993 15098051 1.450000e-06 65.8
13 TraesCS1B01G191800 chr4A 92.982 114 4 2 3001 3111 735363975 735363863 4.990000e-36 163.0
14 TraesCS1B01G191800 chr4A 73.684 399 93 10 2487 2879 564151146 564151538 1.810000e-30 145.0
15 TraesCS1B01G191800 chr4A 84.956 113 12 4 4589 4697 489433340 489433229 6.590000e-20 110.0
16 TraesCS1B01G191800 chr5B 92.241 116 5 2 3004 3116 704168235 704168349 1.790000e-35 161.0
17 TraesCS1B01G191800 chr5B 97.727 44 1 0 6046 6089 231728363 231728406 6.680000e-10 76.8
18 TraesCS1B01G191800 chr4B 92.241 116 5 2 3004 3115 646113824 646113939 1.790000e-35 161.0
19 TraesCS1B01G191800 chr4B 90.833 120 7 2 2997 3113 664786281 664786399 2.320000e-34 158.0
20 TraesCS1B01G191800 chr4B 83.929 112 13 4 4590 4697 130625845 130625955 1.100000e-17 102.0
21 TraesCS1B01G191800 chr4D 84.821 112 12 4 4590 4697 93070612 93070722 2.370000e-19 108.0
22 TraesCS1B01G191800 chr3D 86.585 82 11 0 2800 2881 470488886 470488805 2.390000e-14 91.6
23 TraesCS1B01G191800 chr3A 85.366 82 12 0 2800 2881 612526052 612525971 1.110000e-12 86.1
24 TraesCS1B01G191800 chr3A 89.091 55 6 0 6036 6090 469436480 469436426 1.120000e-07 69.4
25 TraesCS1B01G191800 chr7B 84.524 84 13 0 2798 2881 494217915 494217998 3.990000e-12 84.2
26 TraesCS1B01G191800 chr7B 87.097 62 6 2 6029 6090 228787167 228787226 1.120000e-07 69.4
27 TraesCS1B01G191800 chr5A 100.000 44 0 0 6046 6089 284690378 284690421 1.440000e-11 82.4
28 TraesCS1B01G191800 chr7A 92.308 52 4 0 6036 6087 463014030 463014081 2.400000e-09 75.0
29 TraesCS1B01G191800 chr3B 88.710 62 3 4 6035 6094 758702870 758702929 8.640000e-09 73.1
30 TraesCS1B01G191800 chr7D 89.091 55 5 1 6036 6090 404076274 404076327 4.020000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G191800 chr1B 342971636 342977850 6214 True 11478.0 11478 100.000 1 6215 1 chr1B.!!$R1 6214
1 TraesCS1B01G191800 chr1D 269725041 269731021 5980 True 4184.5 4516 92.207 1 6014 2 chr1D.!!$R1 6013
2 TraesCS1B01G191800 chr1A 333134105 333140206 6101 True 4049.5 4052 91.013 8 6140 2 chr1A.!!$R2 6132

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
53 60 1.021968 GCACTGGAGAAAACAACGGT 58.978 50.0 0.00 0.00 0.00 4.83 F
477 511 1.166531 GCCTCCGTCACACTTTTGCT 61.167 55.0 0.00 0.00 0.00 3.91 F
2115 2249 0.024238 CGACGCAAGAAATCTCTGCG 59.976 55.0 24.62 24.62 46.01 5.18 F
2154 2291 0.033405 CACTCTCCCCCTACCTTCGA 60.033 60.0 0.00 0.00 0.00 3.71 F
3445 3614 0.377203 CTAAAATCGTCCGGCCTTGC 59.623 55.0 0.00 0.00 0.00 4.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1960 2064 0.248702 GTAGCTAGACCTGCAGCGAC 60.249 60.0 8.66 0.0 42.74 5.19 R
2135 2269 0.033405 TCGAAGGTAGGGGGAGAGTG 60.033 60.0 0.00 0.0 0.00 3.51 R
3089 3252 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.0 0.00 0.0 0.00 4.30 R
3468 3640 0.623723 AGACAAATATGGCACGGGGT 59.376 50.0 0.00 0.0 36.86 4.95 R
5224 5497 0.529773 GCGTGATGCCGTCCAGATTA 60.530 55.0 0.00 0.0 37.76 1.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 60 1.021968 GCACTGGAGAAAACAACGGT 58.978 50.000 0.00 0.00 0.00 4.83
55 62 1.021968 ACTGGAGAAAACAACGGTGC 58.978 50.000 0.00 0.00 0.00 5.01
100 112 2.676748 GGAGATCTCCCTCTCACACAT 58.323 52.381 28.84 0.00 42.90 3.21
477 511 1.166531 GCCTCCGTCACACTTTTGCT 61.167 55.000 0.00 0.00 0.00 3.91
494 528 1.406860 GCTCCCTCTCCTAGCCCAAG 61.407 65.000 0.00 0.00 0.00 3.61
495 529 1.383248 TCCCTCTCCTAGCCCAAGC 60.383 63.158 0.00 0.00 40.32 4.01
613 647 1.452953 CGTGGCTATACTCCTGGCGA 61.453 60.000 0.00 0.00 0.00 5.54
622 656 1.227380 CTCCTGGCGATGGTAGTGC 60.227 63.158 0.00 0.00 0.00 4.40
1263 1351 3.677424 GCTCGTCTACCATCAGCTTCTTT 60.677 47.826 0.00 0.00 0.00 2.52
1699 1787 4.099419 TGATCGAAGAGGTTTGCATAGCTA 59.901 41.667 8.90 0.00 43.63 3.32
1700 1788 4.465632 TCGAAGAGGTTTGCATAGCTAA 57.534 40.909 8.90 0.00 0.00 3.09
1701 1789 5.023533 TCGAAGAGGTTTGCATAGCTAAT 57.976 39.130 8.90 1.32 0.00 1.73
1704 1792 7.045416 TCGAAGAGGTTTGCATAGCTAATTAA 58.955 34.615 8.90 0.00 0.00 1.40
1706 1794 7.201609 CGAAGAGGTTTGCATAGCTAATTAACA 60.202 37.037 8.90 0.00 0.00 2.41
1707 1795 8.525290 AAGAGGTTTGCATAGCTAATTAACAT 57.475 30.769 8.90 0.00 0.00 2.71
1708 1796 7.934457 AGAGGTTTGCATAGCTAATTAACATG 58.066 34.615 8.90 0.00 0.00 3.21
1710 1798 7.707104 AGGTTTGCATAGCTAATTAACATGTC 58.293 34.615 7.11 0.00 0.00 3.06
1711 1799 6.632834 GGTTTGCATAGCTAATTAACATGTCG 59.367 38.462 0.00 0.00 0.00 4.35
1713 1801 7.728847 TTGCATAGCTAATTAACATGTCGAT 57.271 32.000 0.00 0.00 0.00 3.59
1714 1802 7.728847 TGCATAGCTAATTAACATGTCGATT 57.271 32.000 0.00 5.38 0.00 3.34
1715 1803 7.575365 TGCATAGCTAATTAACATGTCGATTG 58.425 34.615 13.86 0.00 0.00 2.67
1716 1804 7.440856 TGCATAGCTAATTAACATGTCGATTGA 59.559 33.333 13.86 0.00 0.00 2.57
1745 1844 3.381983 ACCGCTCACGCTGGATCA 61.382 61.111 0.00 0.00 38.22 2.92
1947 2046 4.459337 CGCTTTTGGAAACCTCTATTCCTT 59.541 41.667 6.83 0.00 45.40 3.36
1948 2047 5.392057 CGCTTTTGGAAACCTCTATTCCTTC 60.392 44.000 6.83 0.00 45.40 3.46
1949 2048 5.105716 GCTTTTGGAAACCTCTATTCCTTCC 60.106 44.000 6.83 0.00 45.40 3.46
1950 2049 4.586306 TTGGAAACCTCTATTCCTTCCC 57.414 45.455 6.83 0.00 45.40 3.97
1951 2050 2.850568 TGGAAACCTCTATTCCTTCCCC 59.149 50.000 6.83 0.00 45.40 4.81
2115 2249 0.024238 CGACGCAAGAAATCTCTGCG 59.976 55.000 24.62 24.62 46.01 5.18
2120 2254 1.892468 CAAGAAATCTCTGCGCTTGC 58.108 50.000 9.73 0.00 39.78 4.01
2135 2269 4.704833 TGCGCAGGCCACTTCTCC 62.705 66.667 5.66 0.00 38.85 3.71
2154 2291 0.033405 CACTCTCCCCCTACCTTCGA 60.033 60.000 0.00 0.00 0.00 3.71
2201 2338 0.668535 TGGCCATCTATCGACTCACG 59.331 55.000 0.00 0.00 44.09 4.35
2210 2347 4.845387 TCTATCGACTCACGCATTTACTC 58.155 43.478 0.00 0.00 42.26 2.59
2390 2531 2.095213 GTCAAACACTGTTGCACGAGAA 59.905 45.455 0.00 0.00 0.00 2.87
2446 2591 4.116961 CTGTTTCTTCACGGTGACTTGTA 58.883 43.478 10.97 0.00 0.00 2.41
2450 2595 2.101750 TCTTCACGGTGACTTGTAAGCA 59.898 45.455 10.97 0.00 0.00 3.91
2478 2623 1.238439 CACGCCCTGTGTTTGATTCT 58.762 50.000 0.00 0.00 43.88 2.40
2894 3042 3.896272 ACCCGTAAGAGATGATCCTTACC 59.104 47.826 19.13 8.96 40.77 2.85
2910 3061 4.017867 TCCTTACCTAAACCCTCCCATTTG 60.018 45.833 0.00 0.00 0.00 2.32
2968 3122 2.940147 TGCATTTCGTGGCATGTTAAC 58.060 42.857 6.60 0.00 34.58 2.01
2999 3162 2.756760 TGTCTTCCTACATCACCGTACC 59.243 50.000 0.00 0.00 0.00 3.34
3003 3166 5.243283 GTCTTCCTACATCACCGTACCATAT 59.757 44.000 0.00 0.00 0.00 1.78
3004 3167 6.432162 GTCTTCCTACATCACCGTACCATATA 59.568 42.308 0.00 0.00 0.00 0.86
3005 3168 6.432162 TCTTCCTACATCACCGTACCATATAC 59.568 42.308 0.00 0.00 0.00 1.47
3006 3169 5.884322 TCCTACATCACCGTACCATATACT 58.116 41.667 0.00 0.00 0.00 2.12
3007 3170 5.942236 TCCTACATCACCGTACCATATACTC 59.058 44.000 0.00 0.00 0.00 2.59
3008 3171 5.125097 CCTACATCACCGTACCATATACTCC 59.875 48.000 0.00 0.00 0.00 3.85
3009 3172 3.830755 ACATCACCGTACCATATACTCCC 59.169 47.826 0.00 0.00 0.00 4.30
3010 3173 3.889859 TCACCGTACCATATACTCCCT 57.110 47.619 0.00 0.00 0.00 4.20
3011 3174 3.759581 TCACCGTACCATATACTCCCTC 58.240 50.000 0.00 0.00 0.00 4.30
3012 3175 2.824341 CACCGTACCATATACTCCCTCC 59.176 54.545 0.00 0.00 0.00 4.30
3013 3176 2.089980 CCGTACCATATACTCCCTCCG 58.910 57.143 0.00 0.00 0.00 4.63
3014 3177 2.553904 CCGTACCATATACTCCCTCCGT 60.554 54.545 0.00 0.00 0.00 4.69
3015 3178 3.152341 CGTACCATATACTCCCTCCGTT 58.848 50.000 0.00 0.00 0.00 4.44
3016 3179 3.190118 CGTACCATATACTCCCTCCGTTC 59.810 52.174 0.00 0.00 0.00 3.95
3017 3180 2.236766 ACCATATACTCCCTCCGTTCG 58.763 52.381 0.00 0.00 0.00 3.95
3018 3181 1.544691 CCATATACTCCCTCCGTTCGG 59.455 57.143 4.74 4.74 0.00 4.30
3019 3182 2.511659 CATATACTCCCTCCGTTCGGA 58.488 52.381 13.34 13.34 0.00 4.55
3020 3183 2.734755 TATACTCCCTCCGTTCGGAA 57.265 50.000 14.79 0.00 33.41 4.30
3021 3184 2.083628 ATACTCCCTCCGTTCGGAAT 57.916 50.000 14.79 2.14 33.41 3.01
3022 3185 1.856629 TACTCCCTCCGTTCGGAATT 58.143 50.000 14.79 0.00 33.41 2.17
3023 3186 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3024 3187 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3025 3188 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3026 3189 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3027 3190 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3028 3191 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3029 3192 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3030 3193 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3031 3194 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
3032 3195 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
3033 3196 1.987770 GTTCGGAATTACTTGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
3034 3197 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
3035 3198 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
3036 3199 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
3037 3200 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
3038 3201 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
3039 3202 4.434989 CGGAATTACTTGTCGCGAAAATGA 60.435 41.667 13.05 0.13 0.00 2.57
3040 3203 5.387279 GGAATTACTTGTCGCGAAAATGAA 58.613 37.500 13.05 9.97 0.00 2.57
3041 3204 6.027749 GGAATTACTTGTCGCGAAAATGAAT 58.972 36.000 13.05 11.81 0.00 2.57
3042 3205 6.021468 GGAATTACTTGTCGCGAAAATGAATG 60.021 38.462 13.05 2.76 0.00 2.67
3043 3206 3.896648 ACTTGTCGCGAAAATGAATGT 57.103 38.095 13.05 3.46 0.00 2.71
3044 3207 6.469139 TTACTTGTCGCGAAAATGAATGTA 57.531 33.333 13.05 8.01 0.00 2.29
3045 3208 5.545658 ACTTGTCGCGAAAATGAATGTAT 57.454 34.783 13.05 0.00 0.00 2.29
3046 3209 5.560148 ACTTGTCGCGAAAATGAATGTATC 58.440 37.500 13.05 0.00 0.00 2.24
3047 3210 5.351465 ACTTGTCGCGAAAATGAATGTATCT 59.649 36.000 13.05 0.00 0.00 1.98
3048 3211 6.533723 ACTTGTCGCGAAAATGAATGTATCTA 59.466 34.615 13.05 0.00 0.00 1.98
3049 3212 6.510746 TGTCGCGAAAATGAATGTATCTAG 57.489 37.500 12.06 0.00 0.00 2.43
3050 3213 6.270064 TGTCGCGAAAATGAATGTATCTAGA 58.730 36.000 12.06 0.00 0.00 2.43
3051 3214 6.923508 TGTCGCGAAAATGAATGTATCTAGAT 59.076 34.615 12.06 10.73 0.00 1.98
3052 3215 7.096065 TGTCGCGAAAATGAATGTATCTAGATG 60.096 37.037 12.06 0.00 0.00 2.90
3053 3216 6.923508 TCGCGAAAATGAATGTATCTAGATGT 59.076 34.615 15.79 0.00 0.00 3.06
3054 3217 8.079809 TCGCGAAAATGAATGTATCTAGATGTA 58.920 33.333 15.79 4.44 0.00 2.29
3055 3218 8.864024 CGCGAAAATGAATGTATCTAGATGTAT 58.136 33.333 15.79 6.61 0.00 2.29
3092 3255 9.438291 GATACATCCATTTTGACAAGTAATTCG 57.562 33.333 0.00 0.00 0.00 3.34
3093 3256 6.620678 ACATCCATTTTGACAAGTAATTCGG 58.379 36.000 0.00 0.00 0.00 4.30
3094 3257 6.432783 ACATCCATTTTGACAAGTAATTCGGA 59.567 34.615 0.00 0.00 0.00 4.55
3095 3258 6.885952 TCCATTTTGACAAGTAATTCGGAA 57.114 33.333 0.00 0.00 0.00 4.30
3096 3259 6.674066 TCCATTTTGACAAGTAATTCGGAAC 58.326 36.000 0.00 0.00 0.00 3.62
3129 3292 9.680315 AGTAGTATAAGAAGATTAACGTGCATC 57.320 33.333 0.00 0.00 0.00 3.91
3165 3328 8.568732 TTTTAATTCGAATTGAACAGGTGAAC 57.431 30.769 29.20 0.00 40.00 3.18
3184 3347 6.183360 GGTGAACTTAGTTGATCGCTTAGAAC 60.183 42.308 0.93 0.00 0.00 3.01
3188 3351 6.331061 ACTTAGTTGATCGCTTAGAACGAAT 58.669 36.000 9.21 0.00 43.71 3.34
3189 3352 6.253727 ACTTAGTTGATCGCTTAGAACGAATG 59.746 38.462 9.21 0.00 43.71 2.67
3230 3394 3.307242 GCTAGCACATCCAAAGAAGTACG 59.693 47.826 10.63 0.00 0.00 3.67
3231 3395 3.402628 AGCACATCCAAAGAAGTACGT 57.597 42.857 0.00 0.00 0.00 3.57
3232 3396 4.530710 AGCACATCCAAAGAAGTACGTA 57.469 40.909 0.00 0.00 0.00 3.57
3233 3397 4.243270 AGCACATCCAAAGAAGTACGTAC 58.757 43.478 18.10 18.10 0.00 3.67
3234 3398 4.021368 AGCACATCCAAAGAAGTACGTACT 60.021 41.667 22.45 22.45 38.39 2.73
3235 3399 5.184479 AGCACATCCAAAGAAGTACGTACTA 59.816 40.000 27.59 11.37 34.99 1.82
3236 3400 5.515626 GCACATCCAAAGAAGTACGTACTAG 59.484 44.000 27.59 14.76 34.99 2.57
3237 3401 6.624423 GCACATCCAAAGAAGTACGTACTAGA 60.624 42.308 27.59 16.83 34.99 2.43
3238 3402 7.310664 CACATCCAAAGAAGTACGTACTAGAA 58.689 38.462 27.59 10.26 34.99 2.10
3239 3403 7.974501 CACATCCAAAGAAGTACGTACTAGAAT 59.025 37.037 27.59 12.89 34.99 2.40
3240 3404 8.529476 ACATCCAAAGAAGTACGTACTAGAATT 58.471 33.333 27.59 16.84 34.99 2.17
3241 3405 8.808529 CATCCAAAGAAGTACGTACTAGAATTG 58.191 37.037 27.59 24.74 34.99 2.32
3295 3460 8.012241 TCTTGTTTTGTTTTGTTTCGAAAATGG 58.988 29.630 13.10 0.00 0.00 3.16
3324 3493 7.331791 AGAATTAAGTCAGGACAAGTACCATC 58.668 38.462 5.62 0.00 0.00 3.51
3437 3606 6.018669 GTGTGATCCTCATTCTAAAATCGTCC 60.019 42.308 0.00 0.00 0.00 4.79
3445 3614 0.377203 CTAAAATCGTCCGGCCTTGC 59.623 55.000 0.00 0.00 0.00 4.01
3468 3640 4.615682 CGTTTTATTCTGTGGCATTGCTCA 60.616 41.667 8.82 7.61 0.00 4.26
3531 3707 2.508526 ACTCTAGCTGTTTTGGCTTGG 58.491 47.619 0.00 0.00 40.74 3.61
3532 3708 1.200948 CTCTAGCTGTTTTGGCTTGGC 59.799 52.381 0.00 0.00 40.74 4.52
3533 3709 0.109597 CTAGCTGTTTTGGCTTGGCG 60.110 55.000 0.00 0.00 40.74 5.69
3539 3715 3.244976 CTGTTTTGGCTTGGCGATTTAG 58.755 45.455 0.00 0.00 0.00 1.85
3543 3719 2.411628 TGGCTTGGCGATTTAGCTTA 57.588 45.000 0.00 0.00 37.29 3.09
3544 3720 2.014128 TGGCTTGGCGATTTAGCTTAC 58.986 47.619 0.00 0.00 37.29 2.34
3546 3722 2.223272 GGCTTGGCGATTTAGCTTACAC 60.223 50.000 0.00 0.00 37.29 2.90
3575 3753 6.723298 TTTCCCTTAATTTTGTGAAGCTGA 57.277 33.333 0.00 0.00 0.00 4.26
3577 3755 6.084326 TCCCTTAATTTTGTGAAGCTGAAC 57.916 37.500 0.00 0.00 0.00 3.18
3596 3774 5.531634 TGAACAAGTTTTTGATCTGATGCC 58.468 37.500 0.00 0.00 37.11 4.40
3597 3775 5.068855 TGAACAAGTTTTTGATCTGATGCCA 59.931 36.000 0.00 0.00 37.11 4.92
3598 3776 4.874970 ACAAGTTTTTGATCTGATGCCAC 58.125 39.130 0.00 0.00 37.73 5.01
3613 3791 1.771854 TGCCACACTTAGGTTCCTTCA 59.228 47.619 0.00 0.00 0.00 3.02
3707 3899 6.597562 TCACCTAAACACAACTTCCAACTAT 58.402 36.000 0.00 0.00 0.00 2.12
3710 3902 8.665685 CACCTAAACACAACTTCCAACTATATC 58.334 37.037 0.00 0.00 0.00 1.63
3750 3942 3.688673 GGACAGATGCTCTTTTTCCTCTG 59.311 47.826 0.00 0.00 36.92 3.35
3838 4030 9.619316 TGCATTTACACATATGAACAAAAGTAC 57.381 29.630 10.38 0.00 0.00 2.73
3878 4070 8.665685 CACTACCCTCATAAAAGAAATACACAC 58.334 37.037 0.00 0.00 0.00 3.82
3980 4177 6.930667 ATACAAGTTAGGTTTGTTCGTTGT 57.069 33.333 0.00 0.00 39.36 3.32
3981 4178 8.436046 AATACAAGTTAGGTTTGTTCGTTGTA 57.564 30.769 0.00 0.00 39.36 2.41
3982 4179 6.354039 ACAAGTTAGGTTTGTTCGTTGTAG 57.646 37.500 0.00 0.00 35.32 2.74
3983 4180 5.202640 CAAGTTAGGTTTGTTCGTTGTAGC 58.797 41.667 0.00 0.00 0.00 3.58
4005 4202 6.428295 AGCTAGACTTGTAACCTCTCACTAT 58.572 40.000 0.00 0.00 0.00 2.12
4006 4203 7.575505 AGCTAGACTTGTAACCTCTCACTATA 58.424 38.462 0.00 0.00 0.00 1.31
4007 4204 7.717875 AGCTAGACTTGTAACCTCTCACTATAG 59.282 40.741 0.00 0.00 0.00 1.31
4008 4205 6.702716 AGACTTGTAACCTCTCACTATAGC 57.297 41.667 0.00 0.00 0.00 2.97
4009 4206 6.428295 AGACTTGTAACCTCTCACTATAGCT 58.572 40.000 0.00 0.00 0.00 3.32
4010 4207 6.320164 AGACTTGTAACCTCTCACTATAGCTG 59.680 42.308 0.00 0.00 0.00 4.24
4011 4208 5.952947 ACTTGTAACCTCTCACTATAGCTGT 59.047 40.000 0.00 0.00 0.00 4.40
4028 4225 3.772025 AGCTGTATGTAGACTTGGAAGCT 59.228 43.478 0.00 0.00 33.80 3.74
4029 4226 3.868077 GCTGTATGTAGACTTGGAAGCTG 59.132 47.826 0.00 0.00 0.00 4.24
4030 4227 3.861840 TGTATGTAGACTTGGAAGCTGC 58.138 45.455 0.00 0.00 0.00 5.25
4031 4228 3.515502 TGTATGTAGACTTGGAAGCTGCT 59.484 43.478 0.00 0.00 0.00 4.24
4048 4245 5.816682 AGCTGCTAGGTTACCTTAAATTGT 58.183 37.500 10.01 0.00 34.61 2.71
4193 4417 0.389166 GATCGGTCGATGGATCAGCC 60.389 60.000 18.38 0.00 39.07 4.85
4261 4509 0.393077 ACCTACACACACTGCTGGAC 59.607 55.000 0.00 0.00 0.00 4.02
4289 4537 6.529125 TGATCGATCATCACATCGTAATCATG 59.471 38.462 23.99 0.00 44.99 3.07
4337 4587 9.034544 CACGCATATATATACACATAATGCTGT 57.965 33.333 10.92 8.41 0.00 4.40
4347 4597 1.014352 ATAATGCTGTCCGGTTTCGC 58.986 50.000 0.00 0.74 34.56 4.70
4355 4605 2.739287 CCGGTTTCGCGCCACTAA 60.739 61.111 0.00 0.00 34.56 2.24
4431 4681 2.124122 CACTCGACATGACACGTCAAA 58.876 47.619 3.61 0.00 43.58 2.69
4450 4700 2.782045 CGTACTCGTCGCTCGTCGA 61.782 63.158 10.61 10.61 46.29 4.20
4545 4796 3.879998 TCTAATTGTGTGTGTGGTGTGT 58.120 40.909 0.00 0.00 0.00 3.72
4560 4811 4.326278 GTGGTGTGTGATACTTGTATCGTG 59.674 45.833 13.88 0.00 0.00 4.35
4584 4835 5.923684 GGGAAAAGATTAAATTGTGCAACGA 59.076 36.000 0.00 0.00 42.39 3.85
4599 4858 2.086869 CAACGAATGCAGGTCTCCAAT 58.913 47.619 0.00 0.00 0.00 3.16
4773 5032 4.124943 AGCTACGCCTCCGAGGGA 62.125 66.667 16.51 0.00 35.37 4.20
4899 5158 0.548031 ACTTCGGCATGATGGACCAT 59.452 50.000 6.71 6.71 0.00 3.55
5001 5266 4.624364 CAGCAGCACCACCACGGA 62.624 66.667 0.00 0.00 38.63 4.69
5049 5314 3.965539 ATCCCCGTCGTCGTCGTCT 62.966 63.158 10.76 0.00 38.33 4.18
5244 5517 2.520465 AATCTGGACGGCATCACGCA 62.520 55.000 0.00 0.00 45.17 5.24
5271 5548 4.380841 ACCACAATGATCACGTACGTAT 57.619 40.909 22.34 14.48 0.00 3.06
5611 5904 3.195698 GTGATCGAGCGGCCCAAC 61.196 66.667 0.00 0.00 0.00 3.77
5612 5905 4.812476 TGATCGAGCGGCCCAACG 62.812 66.667 0.00 0.00 0.00 4.10
5670 5963 0.179000 CTCAGCAGGATGGGGTACAC 59.821 60.000 0.00 0.00 35.86 2.90
5705 6002 1.431496 ACGTACGTACCAATGGCAAC 58.569 50.000 21.41 0.00 0.00 4.17
5879 6180 1.078918 CGCACATGAGGCAAGAGGA 60.079 57.895 0.00 0.00 0.00 3.71
5913 6214 1.137872 AGCGGAAGAGAACTATGCCAG 59.862 52.381 0.00 0.00 0.00 4.85
5920 6221 3.806380 AGAGAACTATGCCAGCAGATTG 58.194 45.455 0.00 0.00 0.00 2.67
5921 6222 3.453717 AGAGAACTATGCCAGCAGATTGA 59.546 43.478 0.00 0.00 0.00 2.57
5922 6223 4.102838 AGAGAACTATGCCAGCAGATTGAT 59.897 41.667 0.00 0.00 0.00 2.57
5923 6224 5.306419 AGAGAACTATGCCAGCAGATTGATA 59.694 40.000 0.00 0.00 0.00 2.15
5924 6225 6.013553 AGAGAACTATGCCAGCAGATTGATAT 60.014 38.462 0.00 0.00 0.00 1.63
5994 6302 9.767228 AATCAAACATGTCAAAATCAAAGATGA 57.233 25.926 0.00 0.00 40.57 2.92
5996 6304 9.767228 TCAAACATGTCAAAATCAAAGATGAAT 57.233 25.926 0.00 0.00 39.49 2.57
6014 6322 5.940192 TGAATTTTCATAGTGCGTCTTGT 57.060 34.783 0.00 0.00 31.01 3.16
6015 6323 6.312399 TGAATTTTCATAGTGCGTCTTGTT 57.688 33.333 0.00 0.00 31.01 2.83
6020 6328 1.390123 CATAGTGCGTCTTGTTGTCGG 59.610 52.381 0.00 0.00 0.00 4.79
6021 6329 0.669619 TAGTGCGTCTTGTTGTCGGA 59.330 50.000 0.00 0.00 0.00 4.55
6023 6331 1.300620 TGCGTCTTGTTGTCGGAGG 60.301 57.895 0.00 0.00 0.00 4.30
6024 6332 1.006571 GCGTCTTGTTGTCGGAGGA 60.007 57.895 0.00 0.00 0.00 3.71
6025 6333 1.009389 GCGTCTTGTTGTCGGAGGAG 61.009 60.000 0.00 0.00 0.00 3.69
6028 6336 0.966920 TCTTGTTGTCGGAGGAGGAC 59.033 55.000 0.00 0.00 34.99 3.85
6030 6338 1.111116 TTGTTGTCGGAGGAGGACGT 61.111 55.000 0.00 0.00 37.22 4.34
6031 6339 1.080705 GTTGTCGGAGGAGGACGTG 60.081 63.158 0.00 0.00 37.22 4.49
6032 6340 1.529948 TTGTCGGAGGAGGACGTGT 60.530 57.895 0.00 0.00 37.22 4.49
6033 6341 1.521450 TTGTCGGAGGAGGACGTGTC 61.521 60.000 0.00 0.00 37.22 3.67
6034 6342 1.970114 GTCGGAGGAGGACGTGTCA 60.970 63.158 0.00 0.00 0.00 3.58
6035 6343 1.001269 TCGGAGGAGGACGTGTCAT 60.001 57.895 0.00 0.00 0.00 3.06
6036 6344 1.139734 CGGAGGAGGACGTGTCATG 59.860 63.158 0.00 0.00 0.00 3.07
6037 6345 1.595993 CGGAGGAGGACGTGTCATGT 61.596 60.000 0.00 0.00 0.00 3.21
6038 6346 0.608640 GGAGGAGGACGTGTCATGTT 59.391 55.000 0.00 0.00 0.00 2.71
6039 6347 1.822990 GGAGGAGGACGTGTCATGTTA 59.177 52.381 0.00 0.00 0.00 2.41
6045 6353 2.497675 AGGACGTGTCATGTTATGCTCT 59.502 45.455 0.00 0.00 0.00 4.09
6066 6374 1.003839 CGGAGCTACAACAAGGCCA 60.004 57.895 5.01 0.00 0.00 5.36
6099 6407 0.753262 CCGCCCAGCTTACATCTACT 59.247 55.000 0.00 0.00 0.00 2.57
6107 6415 3.133721 CAGCTTACATCTACTCTTGGGCT 59.866 47.826 0.00 0.00 0.00 5.19
6120 6428 5.842907 ACTCTTGGGCTTTCAAATAACAAC 58.157 37.500 0.00 0.00 0.00 3.32
6140 6448 6.454795 ACAACCCACAACTTATTTGCTTATG 58.545 36.000 0.00 0.00 39.01 1.90
6141 6449 6.041523 ACAACCCACAACTTATTTGCTTATGT 59.958 34.615 0.00 0.00 39.01 2.29
6142 6450 6.664428 ACCCACAACTTATTTGCTTATGTT 57.336 33.333 0.00 0.00 39.01 2.71
6143 6451 7.061566 ACCCACAACTTATTTGCTTATGTTT 57.938 32.000 0.00 0.00 39.01 2.83
6144 6452 6.928492 ACCCACAACTTATTTGCTTATGTTTG 59.072 34.615 0.00 0.00 39.01 2.93
6145 6453 6.368516 CCCACAACTTATTTGCTTATGTTTGG 59.631 38.462 0.00 0.00 39.01 3.28
6146 6454 6.128580 CCACAACTTATTTGCTTATGTTTGGC 60.129 38.462 0.00 0.00 39.01 4.52
6147 6455 5.931724 ACAACTTATTTGCTTATGTTTGGCC 59.068 36.000 0.00 0.00 39.01 5.36
6148 6456 5.084818 ACTTATTTGCTTATGTTTGGCCC 57.915 39.130 0.00 0.00 0.00 5.80
6149 6457 2.671130 ATTTGCTTATGTTTGGCCCG 57.329 45.000 0.00 0.00 0.00 6.13
6150 6458 0.037790 TTTGCTTATGTTTGGCCCGC 60.038 50.000 0.00 0.00 0.00 6.13
6151 6459 1.882989 TTGCTTATGTTTGGCCCGCC 61.883 55.000 0.00 0.00 0.00 6.13
6152 6460 3.076258 GCTTATGTTTGGCCCGCCC 62.076 63.158 0.00 0.00 34.56 6.13
6153 6461 1.680651 CTTATGTTTGGCCCGCCCA 60.681 57.895 0.00 0.00 43.51 5.36
6168 6476 2.339712 CCAACTTTGGGCCGCAAG 59.660 61.111 12.56 12.56 44.70 4.01
6169 6477 2.356194 CAACTTTGGGCCGCAAGC 60.356 61.111 13.77 0.00 42.60 4.01
6170 6478 2.521708 AACTTTGGGCCGCAAGCT 60.522 55.556 13.77 0.84 43.05 3.74
6171 6479 2.564721 AACTTTGGGCCGCAAGCTC 61.565 57.895 13.77 0.00 45.08 4.09
6172 6480 3.752339 CTTTGGGCCGCAAGCTCC 61.752 66.667 0.00 0.00 43.71 4.70
6179 6487 4.183686 CCGCAAGCTCCGCCATTG 62.184 66.667 2.71 0.00 0.00 2.82
6180 6488 3.434319 CGCAAGCTCCGCCATTGT 61.434 61.111 2.71 0.00 0.00 2.71
6181 6489 2.964978 GCAAGCTCCGCCATTGTT 59.035 55.556 0.00 0.00 0.00 2.83
6182 6490 1.444895 GCAAGCTCCGCCATTGTTG 60.445 57.895 0.00 0.00 0.00 3.33
6183 6491 1.959085 CAAGCTCCGCCATTGTTGT 59.041 52.632 0.00 0.00 0.00 3.32
6184 6492 0.314935 CAAGCTCCGCCATTGTTGTT 59.685 50.000 0.00 0.00 0.00 2.83
6185 6493 1.539388 CAAGCTCCGCCATTGTTGTTA 59.461 47.619 0.00 0.00 0.00 2.41
6186 6494 2.128771 AGCTCCGCCATTGTTGTTAT 57.871 45.000 0.00 0.00 0.00 1.89
6187 6495 1.745087 AGCTCCGCCATTGTTGTTATG 59.255 47.619 0.00 0.00 0.00 1.90
6188 6496 1.472480 GCTCCGCCATTGTTGTTATGT 59.528 47.619 0.00 0.00 0.00 2.29
6189 6497 2.477863 GCTCCGCCATTGTTGTTATGTC 60.478 50.000 0.00 0.00 0.00 3.06
6190 6498 3.009723 CTCCGCCATTGTTGTTATGTCT 58.990 45.455 0.00 0.00 0.00 3.41
6191 6499 3.006940 TCCGCCATTGTTGTTATGTCTC 58.993 45.455 0.00 0.00 0.00 3.36
6192 6500 2.097466 CCGCCATTGTTGTTATGTCTCC 59.903 50.000 0.00 0.00 0.00 3.71
6193 6501 2.223021 CGCCATTGTTGTTATGTCTCCG 60.223 50.000 0.00 0.00 0.00 4.63
6194 6502 2.747446 GCCATTGTTGTTATGTCTCCGT 59.253 45.455 0.00 0.00 0.00 4.69
6195 6503 3.190535 GCCATTGTTGTTATGTCTCCGTT 59.809 43.478 0.00 0.00 0.00 4.44
6196 6504 4.722194 CCATTGTTGTTATGTCTCCGTTG 58.278 43.478 0.00 0.00 0.00 4.10
6197 6505 4.379394 CCATTGTTGTTATGTCTCCGTTGG 60.379 45.833 0.00 0.00 0.00 3.77
6198 6506 3.755112 TGTTGTTATGTCTCCGTTGGA 57.245 42.857 0.00 0.00 0.00 3.53
6199 6507 4.280436 TGTTGTTATGTCTCCGTTGGAT 57.720 40.909 0.00 0.00 0.00 3.41
6200 6508 4.250464 TGTTGTTATGTCTCCGTTGGATC 58.750 43.478 0.00 0.00 0.00 3.36
6201 6509 4.020573 TGTTGTTATGTCTCCGTTGGATCT 60.021 41.667 0.00 0.00 0.00 2.75
6202 6510 4.386867 TGTTATGTCTCCGTTGGATCTC 57.613 45.455 0.00 0.00 0.00 2.75
6203 6511 3.181490 TGTTATGTCTCCGTTGGATCTCG 60.181 47.826 0.00 0.00 0.00 4.04
6204 6512 1.475403 ATGTCTCCGTTGGATCTCGT 58.525 50.000 0.00 0.00 0.00 4.18
6205 6513 0.526211 TGTCTCCGTTGGATCTCGTG 59.474 55.000 0.00 0.00 0.00 4.35
6206 6514 0.179134 GTCTCCGTTGGATCTCGTGG 60.179 60.000 0.00 0.00 0.00 4.94
6207 6515 1.141881 CTCCGTTGGATCTCGTGGG 59.858 63.158 0.00 0.00 0.00 4.61
6208 6516 1.304630 TCCGTTGGATCTCGTGGGA 60.305 57.895 0.00 0.00 0.00 4.37
6209 6517 0.686441 TCCGTTGGATCTCGTGGGAT 60.686 55.000 0.00 0.00 0.00 3.85
6210 6518 0.178068 CCGTTGGATCTCGTGGGATT 59.822 55.000 0.00 0.00 0.00 3.01
6211 6519 1.406887 CCGTTGGATCTCGTGGGATTT 60.407 52.381 0.00 0.00 0.00 2.17
6212 6520 1.665679 CGTTGGATCTCGTGGGATTTG 59.334 52.381 0.00 0.00 0.00 2.32
6213 6521 2.017049 GTTGGATCTCGTGGGATTTGG 58.983 52.381 0.00 0.00 0.00 3.28
6214 6522 1.285280 TGGATCTCGTGGGATTTGGT 58.715 50.000 0.00 0.00 0.00 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 45 0.462225 TCGCACCGTTGTTTTCTCCA 60.462 50.000 0.00 0.00 0.00 3.86
39 46 0.234884 CTCGCACCGTTGTTTTCTCC 59.765 55.000 0.00 0.00 0.00 3.71
53 60 6.444633 GGCTATGTATTTTACTACTCTCGCA 58.555 40.000 0.00 0.00 0.00 5.10
55 62 6.978338 TGGGCTATGTATTTTACTACTCTCG 58.022 40.000 0.00 0.00 0.00 4.04
100 112 3.512329 TCGCTAGTCTGGTGGATTTTGTA 59.488 43.478 0.00 0.00 0.00 2.41
477 511 1.383248 GCTTGGGCTAGGAGAGGGA 60.383 63.158 0.00 0.00 35.22 4.20
494 528 1.792057 CGAACGCACGGTCATTTGC 60.792 57.895 9.00 0.00 35.26 3.68
495 529 0.450482 GTCGAACGCACGGTCATTTG 60.450 55.000 9.00 0.00 0.00 2.32
613 647 4.471548 CAGTACCTACCTAGCACTACCAT 58.528 47.826 0.00 0.00 0.00 3.55
622 656 6.436532 CCATACCAATACCAGTACCTACCTAG 59.563 46.154 0.00 0.00 0.00 3.02
1098 1180 1.270465 CCATACATCTGATGCTCCGCA 60.270 52.381 17.24 0.00 44.86 5.69
1430 1518 4.124351 CTTGCACCTGCCATGCCG 62.124 66.667 0.00 0.00 42.69 5.69
1710 1798 1.931172 GGTGGTGGTTATCGTCAATCG 59.069 52.381 0.00 0.00 41.41 3.34
1711 1799 1.931172 CGGTGGTGGTTATCGTCAATC 59.069 52.381 0.00 0.00 0.00 2.67
1713 1801 0.671163 GCGGTGGTGGTTATCGTCAA 60.671 55.000 0.00 0.00 0.00 3.18
1714 1802 1.079681 GCGGTGGTGGTTATCGTCA 60.080 57.895 0.00 0.00 0.00 4.35
1715 1803 0.804933 GAGCGGTGGTGGTTATCGTC 60.805 60.000 0.00 0.00 0.00 4.20
1716 1804 1.217244 GAGCGGTGGTGGTTATCGT 59.783 57.895 0.00 0.00 0.00 3.73
1718 1806 1.082117 CGTGAGCGGTGGTGGTTATC 61.082 60.000 0.00 0.00 0.00 1.75
1719 1807 1.079405 CGTGAGCGGTGGTGGTTAT 60.079 57.895 0.00 0.00 0.00 1.89
1720 1808 2.340809 CGTGAGCGGTGGTGGTTA 59.659 61.111 0.00 0.00 0.00 2.85
1739 1838 1.609072 GATGATCGGTCGAGTGATCCA 59.391 52.381 19.00 10.80 40.19 3.41
1802 1901 4.460382 TGCAGCCTTTTAGATTTCCAAGAG 59.540 41.667 0.00 0.00 0.00 2.85
1960 2064 0.248702 GTAGCTAGACCTGCAGCGAC 60.249 60.000 8.66 0.00 42.74 5.19
2022 2133 6.672593 AGAGTCATGGAGAGAGAAAGATAGT 58.327 40.000 0.00 0.00 0.00 2.12
2120 2254 2.743928 GTGGAGAAGTGGCCTGCG 60.744 66.667 3.32 0.00 0.00 5.18
2131 2265 0.555369 AGGTAGGGGGAGAGTGGAGA 60.555 60.000 0.00 0.00 0.00 3.71
2135 2269 0.033405 TCGAAGGTAGGGGGAGAGTG 60.033 60.000 0.00 0.00 0.00 3.51
2154 2291 0.392461 CCCATGACGGATGAAACGGT 60.392 55.000 0.00 0.00 36.56 4.83
2194 2331 3.060895 CGAAAGGAGTAAATGCGTGAGTC 59.939 47.826 0.00 0.00 0.00 3.36
2201 2338 2.488153 AGGCAACGAAAGGAGTAAATGC 59.512 45.455 0.00 0.00 46.39 3.56
2210 2347 4.766404 ACATAAGAAAGGCAACGAAAGG 57.234 40.909 0.00 0.00 46.39 3.11
2390 2531 2.690497 TCTGATCGCTGTAGCTAGCTTT 59.310 45.455 24.88 1.27 41.51 3.51
2446 2591 0.740737 GGGCGTGCTTCATTATGCTT 59.259 50.000 0.00 0.00 0.00 3.91
2450 2595 1.382522 CACAGGGCGTGCTTCATTAT 58.617 50.000 7.17 0.00 39.19 1.28
2475 2620 0.918258 TCCACCTGCATGCCATAGAA 59.082 50.000 16.68 0.00 0.00 2.10
2478 2623 0.107066 CTGTCCACCTGCATGCCATA 60.107 55.000 16.68 0.00 0.00 2.74
2705 2850 1.991230 CGTCTCCCCCTTGGTCATT 59.009 57.895 0.00 0.00 34.77 2.57
2894 3042 2.456577 CCACCAAATGGGAGGGTTTAG 58.543 52.381 4.17 0.00 45.95 1.85
2910 3061 6.151144 ACAGTTAATCTTCTTAACATGCCACC 59.849 38.462 9.72 0.00 37.35 4.61
2968 3122 8.616076 GGTGATGTAGGAAGACAATTAATCTTG 58.384 37.037 8.49 0.00 36.53 3.02
2990 3144 3.499202 GGAGGGAGTATATGGTACGGTGA 60.499 52.174 0.00 0.00 0.00 4.02
2999 3162 2.511659 TCCGAACGGAGGGAGTATATG 58.488 52.381 12.04 0.00 39.76 1.78
3003 3166 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
3004 3167 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
3005 3168 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3006 3169 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3007 3170 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3008 3171 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3009 3172 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
3010 3173 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
3011 3174 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
3012 3175 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
3013 3176 1.987770 TCGCGACAAGTAATTCCGAAC 59.012 47.619 3.71 0.00 0.00 3.95
3014 3177 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
3015 3178 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
3016 3179 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
3017 3180 4.965062 TCATTTTCGCGACAAGTAATTCC 58.035 39.130 9.15 0.00 0.00 3.01
3018 3181 6.523201 ACATTCATTTTCGCGACAAGTAATTC 59.477 34.615 9.15 0.00 0.00 2.17
3019 3182 6.378582 ACATTCATTTTCGCGACAAGTAATT 58.621 32.000 9.15 0.00 0.00 1.40
3020 3183 5.938322 ACATTCATTTTCGCGACAAGTAAT 58.062 33.333 9.15 9.89 0.00 1.89
3021 3184 5.351233 ACATTCATTTTCGCGACAAGTAA 57.649 34.783 9.15 7.80 0.00 2.24
3022 3185 6.533723 AGATACATTCATTTTCGCGACAAGTA 59.466 34.615 9.15 7.41 0.00 2.24
3023 3186 3.896648 ACATTCATTTTCGCGACAAGT 57.103 38.095 9.15 0.00 0.00 3.16
3024 3187 5.799960 AGATACATTCATTTTCGCGACAAG 58.200 37.500 9.15 3.14 0.00 3.16
3025 3188 5.794687 AGATACATTCATTTTCGCGACAA 57.205 34.783 9.15 9.93 0.00 3.18
3026 3189 6.270064 TCTAGATACATTCATTTTCGCGACA 58.730 36.000 9.15 0.00 0.00 4.35
3027 3190 6.749216 TCTAGATACATTCATTTTCGCGAC 57.251 37.500 9.15 0.00 0.00 5.19
3028 3191 6.923508 ACATCTAGATACATTCATTTTCGCGA 59.076 34.615 3.71 3.71 0.00 5.87
3029 3192 7.110179 ACATCTAGATACATTCATTTTCGCG 57.890 36.000 4.54 0.00 0.00 5.87
3066 3229 9.438291 CGAATTACTTGTCAAAATGGATGTATC 57.562 33.333 0.00 0.00 0.00 2.24
3067 3230 8.405531 CCGAATTACTTGTCAAAATGGATGTAT 58.594 33.333 0.00 0.00 0.00 2.29
3068 3231 7.608376 TCCGAATTACTTGTCAAAATGGATGTA 59.392 33.333 0.00 0.00 0.00 2.29
3069 3232 6.432783 TCCGAATTACTTGTCAAAATGGATGT 59.567 34.615 0.00 0.00 0.00 3.06
3070 3233 6.851609 TCCGAATTACTTGTCAAAATGGATG 58.148 36.000 0.00 0.00 0.00 3.51
3071 3234 7.312899 GTTCCGAATTACTTGTCAAAATGGAT 58.687 34.615 0.00 0.00 0.00 3.41
3072 3235 6.566942 CGTTCCGAATTACTTGTCAAAATGGA 60.567 38.462 0.00 0.00 0.00 3.41
3073 3236 5.567534 CGTTCCGAATTACTTGTCAAAATGG 59.432 40.000 0.00 0.00 0.00 3.16
3074 3237 5.567534 CCGTTCCGAATTACTTGTCAAAATG 59.432 40.000 0.00 0.00 0.00 2.32
3075 3238 5.470777 TCCGTTCCGAATTACTTGTCAAAAT 59.529 36.000 0.00 0.00 0.00 1.82
3076 3239 4.815308 TCCGTTCCGAATTACTTGTCAAAA 59.185 37.500 0.00 0.00 0.00 2.44
3077 3240 4.378774 TCCGTTCCGAATTACTTGTCAAA 58.621 39.130 0.00 0.00 0.00 2.69
3078 3241 3.991773 CTCCGTTCCGAATTACTTGTCAA 59.008 43.478 0.00 0.00 0.00 3.18
3079 3242 3.581755 CTCCGTTCCGAATTACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
3080 3243 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3081 3244 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3082 3245 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3083 3246 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
3084 3247 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
3085 3248 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
3086 3249 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3087 3250 1.755380 CTACTCCCTCCGTTCCGAATT 59.245 52.381 0.00 0.00 0.00 2.17
3088 3251 1.341778 ACTACTCCCTCCGTTCCGAAT 60.342 52.381 0.00 0.00 0.00 3.34
3089 3252 0.038744 ACTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
3090 3253 0.911769 TACTACTCCCTCCGTTCCGA 59.088 55.000 0.00 0.00 0.00 4.55
3091 3254 1.978454 ATACTACTCCCTCCGTTCCG 58.022 55.000 0.00 0.00 0.00 4.30
3092 3255 4.723309 TCTTATACTACTCCCTCCGTTCC 58.277 47.826 0.00 0.00 0.00 3.62
3093 3256 6.060788 TCTTCTTATACTACTCCCTCCGTTC 58.939 44.000 0.00 0.00 0.00 3.95
3094 3257 6.011122 TCTTCTTATACTACTCCCTCCGTT 57.989 41.667 0.00 0.00 0.00 4.44
3095 3258 5.643421 TCTTCTTATACTACTCCCTCCGT 57.357 43.478 0.00 0.00 0.00 4.69
3096 3259 8.513774 GTTAATCTTCTTATACTACTCCCTCCG 58.486 40.741 0.00 0.00 0.00 4.63
3097 3260 8.513774 CGTTAATCTTCTTATACTACTCCCTCC 58.486 40.741 0.00 0.00 0.00 4.30
3098 3261 9.065798 ACGTTAATCTTCTTATACTACTCCCTC 57.934 37.037 0.00 0.00 0.00 4.30
3099 3262 8.848182 CACGTTAATCTTCTTATACTACTCCCT 58.152 37.037 0.00 0.00 0.00 4.20
3100 3263 7.594386 GCACGTTAATCTTCTTATACTACTCCC 59.406 40.741 0.00 0.00 0.00 4.30
3101 3264 8.133627 TGCACGTTAATCTTCTTATACTACTCC 58.866 37.037 0.00 0.00 0.00 3.85
3102 3265 9.680315 ATGCACGTTAATCTTCTTATACTACTC 57.320 33.333 0.00 0.00 0.00 2.59
3103 3266 9.680315 GATGCACGTTAATCTTCTTATACTACT 57.320 33.333 0.00 0.00 0.00 2.57
3104 3267 8.628279 CGATGCACGTTAATCTTCTTATACTAC 58.372 37.037 0.00 0.00 37.22 2.73
3105 3268 8.723777 CGATGCACGTTAATCTTCTTATACTA 57.276 34.615 0.00 0.00 37.22 1.82
3106 3269 7.624706 CGATGCACGTTAATCTTCTTATACT 57.375 36.000 0.00 0.00 37.22 2.12
3129 3292 9.541724 TCAATTCGAATTAAAATCTTTCTGACG 57.458 29.630 22.33 5.39 0.00 4.35
3165 3328 6.472486 TCATTCGTTCTAAGCGATCAACTAAG 59.528 38.462 0.00 0.00 38.21 2.18
3230 3394 7.277098 TCGTGCAAACTAATCCAATTCTAGTAC 59.723 37.037 0.00 0.00 0.00 2.73
3231 3395 7.324935 TCGTGCAAACTAATCCAATTCTAGTA 58.675 34.615 0.00 0.00 0.00 1.82
3232 3396 6.170506 TCGTGCAAACTAATCCAATTCTAGT 58.829 36.000 0.00 0.00 0.00 2.57
3233 3397 6.662414 TCGTGCAAACTAATCCAATTCTAG 57.338 37.500 0.00 0.00 0.00 2.43
3234 3398 7.441890 TTTCGTGCAAACTAATCCAATTCTA 57.558 32.000 0.00 0.00 0.00 2.10
3235 3399 5.957842 TTCGTGCAAACTAATCCAATTCT 57.042 34.783 0.00 0.00 0.00 2.40
3236 3400 6.806249 TCATTTCGTGCAAACTAATCCAATTC 59.194 34.615 0.00 0.00 0.00 2.17
3237 3401 6.686630 TCATTTCGTGCAAACTAATCCAATT 58.313 32.000 0.00 0.00 0.00 2.32
3238 3402 6.266168 TCATTTCGTGCAAACTAATCCAAT 57.734 33.333 0.00 0.00 0.00 3.16
3239 3403 5.697473 TCATTTCGTGCAAACTAATCCAA 57.303 34.783 0.00 0.00 0.00 3.53
3240 3404 5.240623 AGTTCATTTCGTGCAAACTAATCCA 59.759 36.000 0.00 0.00 0.00 3.41
3241 3405 5.699839 AGTTCATTTCGTGCAAACTAATCC 58.300 37.500 0.00 0.00 0.00 3.01
3287 3452 7.764443 TCCTGACTTAATTCTAGTCCATTTTCG 59.236 37.037 14.63 0.00 41.02 3.46
3295 3460 7.975058 GGTACTTGTCCTGACTTAATTCTAGTC 59.025 40.741 11.74 11.74 41.86 2.59
3307 3472 2.230508 TGTCGATGGTACTTGTCCTGAC 59.769 50.000 0.00 0.00 0.00 3.51
3324 3493 4.651994 ACGAACCTACTTACGTTATGTCG 58.348 43.478 0.00 0.00 35.47 4.35
3437 3606 1.199097 ACAGAATAAAACGCAAGGCCG 59.801 47.619 0.00 0.00 46.39 6.13
3445 3614 3.836949 AGCAATGCCACAGAATAAAACG 58.163 40.909 0.00 0.00 0.00 3.60
3468 3640 0.623723 AGACAAATATGGCACGGGGT 59.376 50.000 0.00 0.00 36.86 4.95
3513 3689 1.247567 GCCAAGCCAAAACAGCTAGA 58.752 50.000 0.00 0.00 40.49 2.43
3531 3707 7.378728 GGGAAATAATTGTGTAAGCTAAATCGC 59.621 37.037 0.00 0.00 0.00 4.58
3532 3708 8.621286 AGGGAAATAATTGTGTAAGCTAAATCG 58.379 33.333 0.00 0.00 0.00 3.34
3575 3753 5.163426 TGTGGCATCAGATCAAAAACTTGTT 60.163 36.000 0.00 0.00 0.00 2.83
3577 3755 4.682860 GTGTGGCATCAGATCAAAAACTTG 59.317 41.667 0.00 0.00 0.00 3.16
3596 3774 5.817816 GGACATATGAAGGAACCTAAGTGTG 59.182 44.000 10.38 0.00 0.00 3.82
3597 3775 5.104485 GGGACATATGAAGGAACCTAAGTGT 60.104 44.000 10.38 0.00 0.00 3.55
3598 3776 5.368989 GGGACATATGAAGGAACCTAAGTG 58.631 45.833 10.38 0.00 0.00 3.16
3707 3899 7.049754 TGTCCGCGTATGAATATACCTAGATA 58.950 38.462 4.92 0.00 36.60 1.98
3710 3902 5.353400 TCTGTCCGCGTATGAATATACCTAG 59.647 44.000 4.92 0.00 36.60 3.02
3750 3942 4.941263 TGTGGACATTCTAATAACACTGCC 59.059 41.667 0.00 0.00 0.00 4.85
3831 4023 9.777575 GTAGTGTTGTGTATGTTTTGTACTTTT 57.222 29.630 0.00 0.00 0.00 2.27
3832 4024 8.400186 GGTAGTGTTGTGTATGTTTTGTACTTT 58.600 33.333 0.00 0.00 0.00 2.66
3833 4025 7.012610 GGGTAGTGTTGTGTATGTTTTGTACTT 59.987 37.037 0.00 0.00 0.00 2.24
3834 4026 6.484308 GGGTAGTGTTGTGTATGTTTTGTACT 59.516 38.462 0.00 0.00 0.00 2.73
3835 4027 6.484308 AGGGTAGTGTTGTGTATGTTTTGTAC 59.516 38.462 0.00 0.00 0.00 2.90
3836 4028 6.593807 AGGGTAGTGTTGTGTATGTTTTGTA 58.406 36.000 0.00 0.00 0.00 2.41
3837 4029 5.442391 AGGGTAGTGTTGTGTATGTTTTGT 58.558 37.500 0.00 0.00 0.00 2.83
3838 4030 5.529430 TGAGGGTAGTGTTGTGTATGTTTTG 59.471 40.000 0.00 0.00 0.00 2.44
3878 4070 4.366267 AGGGCATATCTAAGGGATACTGG 58.634 47.826 0.00 0.00 39.43 4.00
3953 4147 9.161684 CAACGAACAAACCTAACTTGTATTTAC 57.838 33.333 0.00 0.00 35.98 2.01
3973 4170 5.242393 AGGTTACAAGTCTAGCTACAACGAA 59.758 40.000 0.00 0.00 0.00 3.85
3980 4177 5.817784 AGTGAGAGGTTACAAGTCTAGCTA 58.182 41.667 0.00 0.00 0.00 3.32
3981 4178 4.668636 AGTGAGAGGTTACAAGTCTAGCT 58.331 43.478 0.00 0.00 0.00 3.32
3982 4179 6.702716 ATAGTGAGAGGTTACAAGTCTAGC 57.297 41.667 0.00 0.00 0.00 3.42
3983 4180 7.717875 AGCTATAGTGAGAGGTTACAAGTCTAG 59.282 40.741 0.84 0.00 0.00 2.43
4005 4202 4.956700 AGCTTCCAAGTCTACATACAGCTA 59.043 41.667 0.00 0.00 33.33 3.32
4006 4203 3.772025 AGCTTCCAAGTCTACATACAGCT 59.228 43.478 0.00 0.00 0.00 4.24
4007 4204 3.868077 CAGCTTCCAAGTCTACATACAGC 59.132 47.826 0.00 0.00 0.00 4.40
4008 4205 3.868077 GCAGCTTCCAAGTCTACATACAG 59.132 47.826 0.00 0.00 0.00 2.74
4009 4206 3.515502 AGCAGCTTCCAAGTCTACATACA 59.484 43.478 0.00 0.00 0.00 2.29
4010 4207 4.130286 AGCAGCTTCCAAGTCTACATAC 57.870 45.455 0.00 0.00 0.00 2.39
4011 4208 4.342378 CCTAGCAGCTTCCAAGTCTACATA 59.658 45.833 0.00 0.00 0.00 2.29
4028 4225 7.172342 ACATGACAATTTAAGGTAACCTAGCA 58.828 34.615 0.00 0.00 31.13 3.49
4029 4226 7.625828 ACATGACAATTTAAGGTAACCTAGC 57.374 36.000 0.00 0.00 31.13 3.42
4030 4227 9.449719 AGAACATGACAATTTAAGGTAACCTAG 57.550 33.333 0.00 0.00 31.13 3.02
4031 4228 9.226606 CAGAACATGACAATTTAAGGTAACCTA 57.773 33.333 0.00 0.00 31.13 3.08
4261 4509 3.636381 ACGATGTGATGATCGATCAGTG 58.364 45.455 30.11 16.94 46.72 3.66
4289 4537 1.394697 CAATCGACACAAACAACGCC 58.605 50.000 0.00 0.00 0.00 5.68
4337 4587 2.510064 ATTAGTGGCGCGAAACCGGA 62.510 55.000 12.10 0.00 0.00 5.14
4347 4597 8.379902 GGAAACAATCAATTTAAATTAGTGGCG 58.620 33.333 12.98 0.78 0.00 5.69
4355 4605 9.187455 GTGTACGTGGAAACAATCAATTTAAAT 57.813 29.630 0.00 0.00 46.06 1.40
4443 4693 1.226323 GTGTCACCCGATCGACGAG 60.226 63.158 18.66 4.98 45.77 4.18
4444 4694 2.872557 GTGTCACCCGATCGACGA 59.127 61.111 18.66 6.84 45.77 4.20
4450 4700 2.674033 TCCGACGTGTCACCCGAT 60.674 61.111 12.37 0.00 0.00 4.18
4545 4796 6.288941 TCTTTTCCCACGATACAAGTATCA 57.711 37.500 17.58 0.00 41.44 2.15
4560 4811 5.923684 TCGTTGCACAATTTAATCTTTTCCC 59.076 36.000 0.00 0.00 0.00 3.97
4584 4835 2.610438 ACCAATTGGAGACCTGCATT 57.390 45.000 31.22 0.85 38.94 3.56
4596 4855 2.508867 CTCGCGTTGATGAACCAATTG 58.491 47.619 5.77 0.00 0.00 2.32
4599 4858 0.953471 CCCTCGCGTTGATGAACCAA 60.953 55.000 5.77 0.00 0.00 3.67
4725 4984 1.551019 GGTTAGGGTTCGCCAGGTCT 61.551 60.000 0.00 0.00 39.65 3.85
5223 5496 1.491670 CGTGATGCCGTCCAGATTAG 58.508 55.000 0.00 0.00 0.00 1.73
5224 5497 0.529773 GCGTGATGCCGTCCAGATTA 60.530 55.000 0.00 0.00 37.76 1.75
5226 5499 2.202932 GCGTGATGCCGTCCAGAT 60.203 61.111 0.00 0.00 37.76 2.90
5244 5517 4.002906 ACGTGATCATTGTGGTACTGTT 57.997 40.909 0.00 0.00 0.00 3.16
5271 5548 2.480390 TGACATGATGATCCCTGGACA 58.520 47.619 0.00 0.00 0.00 4.02
5591 5884 4.451150 GGGCCGCTCGATCACACA 62.451 66.667 0.00 0.00 0.00 3.72
5612 5905 4.925861 GAGCATCTCTGGCCGGCC 62.926 72.222 39.40 39.40 0.00 6.13
5624 5917 0.176680 CCTGTCGCCAGTAAGAGCAT 59.823 55.000 0.00 0.00 36.95 3.79
5685 5978 2.605030 GTTGCCATTGGTACGTACGTA 58.395 47.619 23.60 23.60 0.00 3.57
5686 5979 1.431496 GTTGCCATTGGTACGTACGT 58.569 50.000 25.98 25.98 0.00 3.57
5687 5980 0.367548 CGTTGCCATTGGTACGTACG 59.632 55.000 18.98 15.01 31.77 3.67
5688 5981 0.095762 GCGTTGCCATTGGTACGTAC 59.904 55.000 23.76 17.56 36.08 3.67
5879 6180 4.918588 TCTTCCGCTTAAGAAAGGGAATT 58.081 39.130 6.67 0.00 45.94 2.17
5895 6196 1.134699 TGCTGGCATAGTTCTCTTCCG 60.135 52.381 0.00 0.00 0.00 4.30
5913 6214 5.292765 TCACGAGGAGAAATATCAATCTGC 58.707 41.667 0.00 0.00 34.57 4.26
5994 6302 6.072112 ACAACAAGACGCACTATGAAAATT 57.928 33.333 0.00 0.00 0.00 1.82
5996 6304 4.318475 CGACAACAAGACGCACTATGAAAA 60.318 41.667 0.00 0.00 0.00 2.29
6014 6322 1.521450 GACACGTCCTCCTCCGACAA 61.521 60.000 0.00 0.00 0.00 3.18
6015 6323 1.970114 GACACGTCCTCCTCCGACA 60.970 63.158 0.00 0.00 0.00 4.35
6020 6328 3.448686 CATAACATGACACGTCCTCCTC 58.551 50.000 0.00 0.00 0.00 3.71
6021 6329 2.418746 GCATAACATGACACGTCCTCCT 60.419 50.000 0.00 0.00 0.00 3.69
6023 6331 2.860735 GAGCATAACATGACACGTCCTC 59.139 50.000 0.00 0.00 0.00 3.71
6024 6332 2.497675 AGAGCATAACATGACACGTCCT 59.502 45.455 0.00 0.00 0.00 3.85
6025 6333 2.604914 CAGAGCATAACATGACACGTCC 59.395 50.000 0.00 0.00 0.00 4.79
6028 6336 1.328680 GCCAGAGCATAACATGACACG 59.671 52.381 0.00 0.00 39.53 4.49
6030 6338 1.655484 CGCCAGAGCATAACATGACA 58.345 50.000 0.00 0.00 39.83 3.58
6031 6339 0.940126 CCGCCAGAGCATAACATGAC 59.060 55.000 0.00 0.00 39.83 3.06
6032 6340 0.829990 TCCGCCAGAGCATAACATGA 59.170 50.000 0.00 0.00 39.83 3.07
6033 6341 1.224075 CTCCGCCAGAGCATAACATG 58.776 55.000 0.00 0.00 39.83 3.21
6034 6342 3.694364 CTCCGCCAGAGCATAACAT 57.306 52.632 0.00 0.00 39.83 2.71
6045 6353 1.003839 CCTTGTTGTAGCTCCGCCA 60.004 57.895 0.00 0.00 0.00 5.69
6081 6389 1.683917 AGAGTAGATGTAAGCTGGGCG 59.316 52.381 0.00 0.00 30.71 6.13
6099 6407 4.039852 GGGTTGTTATTTGAAAGCCCAAGA 59.960 41.667 0.00 0.00 35.82 3.02
6107 6415 9.892130 AAATAAGTTGTGGGTTGTTATTTGAAA 57.108 25.926 0.00 0.00 33.89 2.69
6120 6428 6.368516 CCAAACATAAGCAAATAAGTTGTGGG 59.631 38.462 0.00 0.00 39.63 4.61
6141 6449 2.444895 AAAGTTGGGCGGGCCAAA 60.445 55.556 34.08 17.67 37.98 3.28
6142 6450 3.230245 CAAAGTTGGGCGGGCCAA 61.230 61.111 29.82 29.82 37.98 4.52
6152 6460 2.356194 GCTTGCGGCCCAAAGTTG 60.356 61.111 12.42 1.62 31.94 3.16
6153 6461 2.521708 AGCTTGCGGCCCAAAGTT 60.522 55.556 12.42 5.03 43.05 2.66
6154 6462 2.985847 GAGCTTGCGGCCCAAAGT 60.986 61.111 12.42 1.88 43.05 2.66
6155 6463 3.752339 GGAGCTTGCGGCCCAAAG 61.752 66.667 0.00 1.90 43.05 2.77
6169 6477 3.009723 AGACATAACAACAATGGCGGAG 58.990 45.455 0.00 0.00 37.44 4.63
6170 6478 3.006940 GAGACATAACAACAATGGCGGA 58.993 45.455 0.00 0.00 37.44 5.54
6171 6479 2.097466 GGAGACATAACAACAATGGCGG 59.903 50.000 0.00 0.00 37.44 6.13
6172 6480 2.223021 CGGAGACATAACAACAATGGCG 60.223 50.000 0.00 0.00 37.44 5.69
6173 6481 2.747446 ACGGAGACATAACAACAATGGC 59.253 45.455 0.00 0.00 32.10 4.40
6174 6482 4.379394 CCAACGGAGACATAACAACAATGG 60.379 45.833 0.00 0.00 0.00 3.16
6175 6483 4.454161 TCCAACGGAGACATAACAACAATG 59.546 41.667 0.00 0.00 0.00 2.82
6176 6484 4.647611 TCCAACGGAGACATAACAACAAT 58.352 39.130 0.00 0.00 0.00 2.71
6177 6485 4.074627 TCCAACGGAGACATAACAACAA 57.925 40.909 0.00 0.00 0.00 2.83
6178 6486 3.755112 TCCAACGGAGACATAACAACA 57.245 42.857 0.00 0.00 0.00 3.33
6179 6487 4.504858 AGATCCAACGGAGACATAACAAC 58.495 43.478 0.00 0.00 34.05 3.32
6180 6488 4.676986 CGAGATCCAACGGAGACATAACAA 60.677 45.833 0.00 0.00 34.05 2.83
6181 6489 3.181490 CGAGATCCAACGGAGACATAACA 60.181 47.826 0.00 0.00 34.05 2.41
6182 6490 3.181489 ACGAGATCCAACGGAGACATAAC 60.181 47.826 8.84 0.00 34.05 1.89
6183 6491 3.021695 ACGAGATCCAACGGAGACATAA 58.978 45.455 8.84 0.00 34.05 1.90
6184 6492 2.357952 CACGAGATCCAACGGAGACATA 59.642 50.000 8.84 0.00 34.05 2.29
6185 6493 1.135139 CACGAGATCCAACGGAGACAT 59.865 52.381 8.84 0.00 34.05 3.06
6186 6494 0.526211 CACGAGATCCAACGGAGACA 59.474 55.000 8.84 0.00 34.05 3.41
6187 6495 0.179134 CCACGAGATCCAACGGAGAC 60.179 60.000 8.84 0.00 34.05 3.36
6188 6496 1.320344 CCCACGAGATCCAACGGAGA 61.320 60.000 8.84 0.00 34.05 3.71
6189 6497 1.141881 CCCACGAGATCCAACGGAG 59.858 63.158 8.84 2.46 34.05 4.63
6190 6498 0.686441 ATCCCACGAGATCCAACGGA 60.686 55.000 8.84 0.00 35.55 4.69
6191 6499 0.178068 AATCCCACGAGATCCAACGG 59.822 55.000 8.84 0.00 0.00 4.44
6192 6500 1.665679 CAAATCCCACGAGATCCAACG 59.334 52.381 0.00 0.00 0.00 4.10
6193 6501 2.017049 CCAAATCCCACGAGATCCAAC 58.983 52.381 0.00 0.00 0.00 3.77
6194 6502 1.633432 ACCAAATCCCACGAGATCCAA 59.367 47.619 0.00 0.00 0.00 3.53
6195 6503 1.285280 ACCAAATCCCACGAGATCCA 58.715 50.000 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.