Multiple sequence alignment - TraesCS1B01G191700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G191700 chr1B 100.000 3142 0 0 1 3142 342650514 342647373 0.000000e+00 5803.0
1 TraesCS1B01G191700 chr1B 92.453 53 1 2 249 300 38918917 38918967 4.350000e-09 73.1
2 TraesCS1B01G191700 chr1D 95.616 2304 54 10 328 2594 237143102 237145395 0.000000e+00 3651.0
3 TraesCS1B01G191700 chr1D 93.645 535 26 3 2608 3142 237145770 237146296 0.000000e+00 793.0
4 TraesCS1B01G191700 chr1D 96.000 175 6 1 77 250 237142498 237142672 1.840000e-72 283.0
5 TraesCS1B01G191700 chr1D 94.118 51 3 0 250 300 476559288 476559338 9.340000e-11 78.7
6 TraesCS1B01G191700 chr1D 100.000 39 0 0 299 337 237143055 237143093 4.350000e-09 73.1
7 TraesCS1B01G191700 chr1A 95.189 2224 61 8 404 2594 308569412 308571622 0.000000e+00 3472.0
8 TraesCS1B01G191700 chr1A 92.139 547 37 4 2597 3142 308571662 308572203 0.000000e+00 767.0
9 TraesCS1B01G191700 chr1A 95.984 249 8 2 7 253 308569056 308569304 1.360000e-108 403.0
10 TraesCS1B01G191700 chr1A 100.000 61 0 0 330 390 308569366 308569426 2.560000e-21 113.0
11 TraesCS1B01G191700 chr1A 100.000 45 0 0 299 343 308569303 308569347 2.010000e-12 84.2
12 TraesCS1B01G191700 chr1A 93.878 49 3 0 252 300 568532211 568532163 1.210000e-09 75.0
13 TraesCS1B01G191700 chrUn 98.000 50 0 1 252 300 466887437 466887388 5.580000e-13 86.1
14 TraesCS1B01G191700 chrUn 90.909 55 3 2 252 304 33590691 33590745 4.350000e-09 73.1
15 TraesCS1B01G191700 chrUn 90.909 55 3 2 252 304 391871621 391871567 4.350000e-09 73.1
16 TraesCS1B01G191700 chr5B 98.000 50 0 1 252 300 507061300 507061349 5.580000e-13 86.1
17 TraesCS1B01G191700 chr5B 92.308 52 1 1 252 300 457724181 457724130 1.560000e-08 71.3
18 TraesCS1B01G191700 chr5A 78.322 143 16 11 2442 2583 707723993 707724121 9.340000e-11 78.7
19 TraesCS1B01G191700 chr5A 77.622 143 17 11 2442 2583 551483569 551483441 4.350000e-09 73.1
20 TraesCS1B01G191700 chr6A 78.261 115 25 0 1419 1533 123372118 123372004 1.210000e-09 75.0
21 TraesCS1B01G191700 chr7B 92.308 52 1 1 252 300 745260575 745260626 1.560000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G191700 chr1B 342647373 342650514 3141 True 5803.000 5803 100.00000 1 3142 1 chr1B.!!$R1 3141
1 TraesCS1B01G191700 chr1D 237142498 237146296 3798 False 1200.025 3651 96.31525 77 3142 4 chr1D.!!$F2 3065
2 TraesCS1B01G191700 chr1A 308569056 308572203 3147 False 967.840 3472 96.66240 7 3142 5 chr1A.!!$F1 3135


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
274 658 0.478507 CCCTCTGTTCCAAGTTGGGT 59.521 55.0 21.85 0.0 38.32 4.51 F
1527 1947 0.108804 ACGATGACAACGGCGAAGAT 60.109 50.0 16.62 0.0 34.93 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1821 2241 0.031585 CTTGGCATGCATGGGAATCG 59.968 55.0 27.34 0.91 0.0 3.34 R
2650 3464 0.108377 TGGCAGCATCGACGTACATT 60.108 50.0 0.00 0.00 0.0 2.71 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 5.041940 CGAATCTAGACCTTTTCCTTACGG 58.958 45.833 0.00 0.00 0.00 4.02
156 158 2.769602 TCTACCTTCGCCCCTAAGAT 57.230 50.000 0.00 0.00 0.00 2.40
186 188 3.831333 TGGAGGTACCATGTACGTAACAA 59.169 43.478 15.94 0.00 44.64 2.83
253 637 2.606272 GCCACACCACGCTATAAGTTAC 59.394 50.000 0.00 0.00 0.00 2.50
254 638 3.677976 GCCACACCACGCTATAAGTTACT 60.678 47.826 0.00 0.00 0.00 2.24
255 639 4.110482 CCACACCACGCTATAAGTTACTC 58.890 47.826 0.00 0.00 0.00 2.59
256 640 4.110482 CACACCACGCTATAAGTTACTCC 58.890 47.826 0.00 0.00 0.00 3.85
257 641 3.131755 ACACCACGCTATAAGTTACTCCC 59.868 47.826 0.00 0.00 0.00 4.30
258 642 3.383825 CACCACGCTATAAGTTACTCCCT 59.616 47.826 0.00 0.00 0.00 4.20
259 643 3.635836 ACCACGCTATAAGTTACTCCCTC 59.364 47.826 0.00 0.00 0.00 4.30
260 644 3.890147 CCACGCTATAAGTTACTCCCTCT 59.110 47.826 0.00 0.00 0.00 3.69
261 645 4.261656 CCACGCTATAAGTTACTCCCTCTG 60.262 50.000 0.00 0.00 0.00 3.35
262 646 4.338682 CACGCTATAAGTTACTCCCTCTGT 59.661 45.833 0.00 0.00 0.00 3.41
263 647 4.954826 ACGCTATAAGTTACTCCCTCTGTT 59.045 41.667 0.00 0.00 0.00 3.16
264 648 5.067544 ACGCTATAAGTTACTCCCTCTGTTC 59.932 44.000 0.00 0.00 0.00 3.18
265 649 5.507650 CGCTATAAGTTACTCCCTCTGTTCC 60.508 48.000 0.00 0.00 0.00 3.62
266 650 5.363005 GCTATAAGTTACTCCCTCTGTTCCA 59.637 44.000 0.00 0.00 0.00 3.53
267 651 6.127140 GCTATAAGTTACTCCCTCTGTTCCAA 60.127 42.308 0.00 0.00 0.00 3.53
268 652 4.625607 AAGTTACTCCCTCTGTTCCAAG 57.374 45.455 0.00 0.00 0.00 3.61
269 653 3.588569 AGTTACTCCCTCTGTTCCAAGT 58.411 45.455 0.00 0.00 0.00 3.16
270 654 3.974642 AGTTACTCCCTCTGTTCCAAGTT 59.025 43.478 0.00 0.00 0.00 2.66
271 655 2.938956 ACTCCCTCTGTTCCAAGTTG 57.061 50.000 0.00 0.00 0.00 3.16
272 656 1.421646 ACTCCCTCTGTTCCAAGTTGG 59.578 52.381 16.36 16.36 39.43 3.77
273 657 0.771127 TCCCTCTGTTCCAAGTTGGG 59.229 55.000 21.85 5.82 38.32 4.12
274 658 0.478507 CCCTCTGTTCCAAGTTGGGT 59.521 55.000 21.85 0.00 38.32 4.51
275 659 1.545651 CCCTCTGTTCCAAGTTGGGTC 60.546 57.143 21.85 14.67 38.32 4.46
276 660 1.142870 CCTCTGTTCCAAGTTGGGTCA 59.857 52.381 21.85 18.01 38.32 4.02
277 661 2.224867 CCTCTGTTCCAAGTTGGGTCAT 60.225 50.000 21.85 0.00 38.32 3.06
278 662 3.077359 CTCTGTTCCAAGTTGGGTCATC 58.923 50.000 21.85 8.51 38.32 2.92
279 663 2.711009 TCTGTTCCAAGTTGGGTCATCT 59.289 45.455 21.85 0.00 38.32 2.90
280 664 3.907474 TCTGTTCCAAGTTGGGTCATCTA 59.093 43.478 21.85 0.00 38.32 1.98
281 665 4.536090 TCTGTTCCAAGTTGGGTCATCTAT 59.464 41.667 21.85 0.00 38.32 1.98
282 666 5.014123 TCTGTTCCAAGTTGGGTCATCTATT 59.986 40.000 21.85 0.00 38.32 1.73
283 667 5.640147 TGTTCCAAGTTGGGTCATCTATTT 58.360 37.500 21.85 0.00 38.32 1.40
284 668 6.074648 TGTTCCAAGTTGGGTCATCTATTTT 58.925 36.000 21.85 0.00 38.32 1.82
285 669 6.015519 TGTTCCAAGTTGGGTCATCTATTTTG 60.016 38.462 21.85 0.00 38.32 2.44
286 670 5.016173 TCCAAGTTGGGTCATCTATTTTGG 58.984 41.667 21.85 0.00 38.32 3.28
287 671 5.016173 CCAAGTTGGGTCATCTATTTTGGA 58.984 41.667 14.64 0.00 32.67 3.53
288 672 5.480073 CCAAGTTGGGTCATCTATTTTGGAA 59.520 40.000 14.64 0.00 32.67 3.53
289 673 6.389906 CAAGTTGGGTCATCTATTTTGGAAC 58.610 40.000 0.00 0.00 0.00 3.62
290 674 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
291 675 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
292 676 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
293 677 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
294 678 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
295 679 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
296 680 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
297 681 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
298 682 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
299 683 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
533 953 4.007644 TGCGGTCTCCTGCCACTG 62.008 66.667 0.00 0.00 0.00 3.66
1475 1895 1.152652 AGATCGAGGAGTCGGCCAT 60.153 57.895 2.24 0.00 46.80 4.40
1527 1947 0.108804 ACGATGACAACGGCGAAGAT 60.109 50.000 16.62 0.00 34.93 2.40
1533 1953 2.047655 AACGGCGAAGATGCGGAA 60.048 55.556 16.62 0.00 38.43 4.30
1669 2089 1.153005 GAGCAGGAGGCCATTGAGG 60.153 63.158 5.01 0.00 46.50 3.86
1796 2216 4.617530 CGACAAGGATCTCGACAGGTAAAA 60.618 45.833 0.00 0.00 31.24 1.52
1797 2217 5.223449 ACAAGGATCTCGACAGGTAAAAA 57.777 39.130 0.00 0.00 0.00 1.94
1809 2229 2.873472 CAGGTAAAAATACGCCGCCATA 59.127 45.455 0.00 0.00 0.00 2.74
1821 2241 1.599542 GCCGCCATAGTCTTGAACATC 59.400 52.381 0.00 0.00 0.00 3.06
1827 2247 4.212214 GCCATAGTCTTGAACATCGATTCC 59.788 45.833 0.00 0.00 0.00 3.01
1835 2255 2.619646 TGAACATCGATTCCCATGCATG 59.380 45.455 20.19 20.19 0.00 4.06
1922 2366 2.538939 GGATTATTTCAAGCGTGCGGTC 60.539 50.000 0.00 0.00 0.00 4.79
2066 2510 2.735772 CCACCACCGGAGCAGCTAT 61.736 63.158 9.46 0.00 0.00 2.97
2087 2531 0.898320 CGTGGTTCCTCTGGATGACT 59.102 55.000 0.00 0.00 0.00 3.41
2417 2870 3.658725 AGTACAGTAGGGCCTCATCAAT 58.341 45.455 10.74 0.00 0.00 2.57
2418 2871 4.816126 AGTACAGTAGGGCCTCATCAATA 58.184 43.478 10.74 0.00 0.00 1.90
2584 3037 4.577693 AGTGCAGCTGTGGTATGATATTTG 59.422 41.667 16.64 0.00 0.00 2.32
2594 3047 7.390823 TGTGGTATGATATTTGCGGTATACAT 58.609 34.615 5.01 0.00 0.00 2.29
2596 3049 9.542462 GTGGTATGATATTTGCGGTATACATAT 57.458 33.333 5.01 0.00 0.00 1.78
2650 3464 6.127535 CCTGACTTACTAATCTTTACCGGACA 60.128 42.308 9.46 0.00 0.00 4.02
2654 3468 7.618137 ACTTACTAATCTTTACCGGACAATGT 58.382 34.615 9.46 0.00 0.00 2.71
2717 3531 2.421952 GCATCCCAGCTCCAATCTTGTA 60.422 50.000 0.00 0.00 0.00 2.41
2768 3582 3.620966 GCTTCTGAAGGTCAATGTAGCCT 60.621 47.826 18.38 0.00 0.00 4.58
2807 3621 3.637998 TCGACGTCCTTCATATTAGCC 57.362 47.619 10.58 0.00 0.00 3.93
2810 3624 3.566523 GACGTCCTTCATATTAGCCTCG 58.433 50.000 3.51 0.00 0.00 4.63
2830 3644 0.530744 TCGAAGGTTGATCCCGACAG 59.469 55.000 0.00 0.00 36.75 3.51
2848 3662 2.135933 CAGGACGGTGTTCTTGAAGAC 58.864 52.381 0.00 2.52 0.00 3.01
2993 3807 8.463930 AACACAAAGGTAGATCTGAAAATTGA 57.536 30.769 5.18 0.00 0.00 2.57
3061 3875 8.818860 ACACAAGTATTTTACACCCTGTCTATA 58.181 33.333 0.00 0.00 0.00 1.31
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 7.481642 TCCAGTTTAGTATCAGTCGATCTTTC 58.518 38.462 0.00 0.00 32.73 2.62
50 51 6.401153 GCTGTTTTCCAGTTTAGTATCAGTCG 60.401 42.308 0.00 0.00 43.55 4.18
186 188 4.829492 GGCTGGAAAGATAGCATACCAAAT 59.171 41.667 0.00 0.00 41.63 2.32
253 637 1.271597 CCCAACTTGGAACAGAGGGAG 60.272 57.143 9.61 0.00 40.96 4.30
254 638 0.771127 CCCAACTTGGAACAGAGGGA 59.229 55.000 9.61 0.00 40.96 4.20
255 639 0.478507 ACCCAACTTGGAACAGAGGG 59.521 55.000 9.61 0.00 40.96 4.30
256 640 1.142870 TGACCCAACTTGGAACAGAGG 59.857 52.381 9.61 0.00 40.96 3.69
257 641 2.638480 TGACCCAACTTGGAACAGAG 57.362 50.000 9.61 0.00 40.96 3.35
258 642 2.711009 AGATGACCCAACTTGGAACAGA 59.289 45.455 9.61 0.00 40.96 3.41
259 643 3.146104 AGATGACCCAACTTGGAACAG 57.854 47.619 9.61 0.00 40.96 3.16
260 644 4.927267 ATAGATGACCCAACTTGGAACA 57.073 40.909 9.61 8.99 40.96 3.18
261 645 6.389906 CAAAATAGATGACCCAACTTGGAAC 58.610 40.000 9.61 3.66 40.96 3.62
262 646 5.480073 CCAAAATAGATGACCCAACTTGGAA 59.520 40.000 9.61 0.00 40.96 3.53
263 647 5.016173 CCAAAATAGATGACCCAACTTGGA 58.984 41.667 9.61 0.00 40.96 3.53
264 648 5.016173 TCCAAAATAGATGACCCAACTTGG 58.984 41.667 0.12 0.12 37.25 3.61
265 649 6.389906 GTTCCAAAATAGATGACCCAACTTG 58.610 40.000 0.00 0.00 0.00 3.16
266 650 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
267 651 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
268 652 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
269 653 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
270 654 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
271 655 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
272 656 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
273 657 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
274 658 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
275 659 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
276 660 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
277 661 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
278 662 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
279 663 5.502089 TTTACTCCCTCCGTTCCAAAATA 57.498 39.130 0.00 0.00 0.00 1.40
280 664 4.376225 TTTACTCCCTCCGTTCCAAAAT 57.624 40.909 0.00 0.00 0.00 1.82
281 665 3.860968 TTTACTCCCTCCGTTCCAAAA 57.139 42.857 0.00 0.00 0.00 2.44
282 666 3.479489 GTTTTACTCCCTCCGTTCCAAA 58.521 45.455 0.00 0.00 0.00 3.28
283 667 2.548493 CGTTTTACTCCCTCCGTTCCAA 60.548 50.000 0.00 0.00 0.00 3.53
284 668 1.001181 CGTTTTACTCCCTCCGTTCCA 59.999 52.381 0.00 0.00 0.00 3.53
285 669 1.718396 CGTTTTACTCCCTCCGTTCC 58.282 55.000 0.00 0.00 0.00 3.62
286 670 1.073964 GCGTTTTACTCCCTCCGTTC 58.926 55.000 0.00 0.00 0.00 3.95
287 671 0.683412 AGCGTTTTACTCCCTCCGTT 59.317 50.000 0.00 0.00 0.00 4.44
288 672 0.683412 AAGCGTTTTACTCCCTCCGT 59.317 50.000 0.00 0.00 0.00 4.69
289 673 1.730612 GAAAGCGTTTTACTCCCTCCG 59.269 52.381 0.00 0.00 0.00 4.63
290 674 1.730612 CGAAAGCGTTTTACTCCCTCC 59.269 52.381 0.00 0.00 0.00 4.30
403 822 2.093447 GGGTGCTAGCTACTTGTCACAT 60.093 50.000 17.23 0.00 0.00 3.21
533 953 2.584694 GAGTGAGCTAGCTGCCGC 60.585 66.667 24.99 15.40 44.23 6.53
535 955 1.153469 GTGGAGTGAGCTAGCTGCC 60.153 63.158 24.99 17.50 44.23 4.85
1527 1947 2.284798 GATCGTCTGCCTCTTCCGCA 62.285 60.000 0.00 0.00 34.41 5.69
1533 1953 0.393132 TCGTCAGATCGTCTGCCTCT 60.393 55.000 9.34 0.00 43.95 3.69
1796 2216 1.411246 TCAAGACTATGGCGGCGTATT 59.589 47.619 11.75 6.03 0.00 1.89
1797 2217 1.037493 TCAAGACTATGGCGGCGTAT 58.963 50.000 11.75 6.38 0.00 3.06
1809 2229 3.981071 TGGGAATCGATGTTCAAGACT 57.019 42.857 0.00 0.00 0.00 3.24
1821 2241 0.031585 CTTGGCATGCATGGGAATCG 59.968 55.000 27.34 0.91 0.00 3.34
1835 2255 0.447801 CGTAACAGGTGCATCTTGGC 59.552 55.000 0.00 0.00 0.00 4.52
1904 2348 0.440758 CGACCGCACGCTTGAAATAA 59.559 50.000 0.00 0.00 0.00 1.40
2066 2510 1.191489 TCATCCAGAGGAACCACGCA 61.191 55.000 0.00 0.00 34.34 5.24
2087 2531 3.625897 CAGGTCTCCACACCGCCA 61.626 66.667 0.00 0.00 41.90 5.69
2168 2612 7.115378 GTCGGTCTTTAATTGTCTTTAACTCGA 59.885 37.037 0.00 0.00 0.00 4.04
2169 2613 7.225397 GTCGGTCTTTAATTGTCTTTAACTCG 58.775 38.462 0.00 0.00 0.00 4.18
2170 2614 7.387122 AGGTCGGTCTTTAATTGTCTTTAACTC 59.613 37.037 0.00 0.00 0.00 3.01
2171 2615 7.222161 AGGTCGGTCTTTAATTGTCTTTAACT 58.778 34.615 0.00 0.00 0.00 2.24
2172 2616 7.430992 AGGTCGGTCTTTAATTGTCTTTAAC 57.569 36.000 0.00 0.00 0.00 2.01
2173 2617 6.366877 CGAGGTCGGTCTTTAATTGTCTTTAA 59.633 38.462 0.00 0.00 35.37 1.52
2354 2807 4.985413 ACAACATCAACATTATTCGCCTG 58.015 39.130 0.00 0.00 0.00 4.85
2417 2870 6.435591 TGCTTTATTCCAAATCCACACATGTA 59.564 34.615 0.00 0.00 0.00 2.29
2418 2871 5.245751 TGCTTTATTCCAAATCCACACATGT 59.754 36.000 0.00 0.00 0.00 3.21
2584 3037 5.643777 AGCAGGATGAAAATATGTATACCGC 59.356 40.000 0.00 0.00 39.69 5.68
2594 3047 3.054139 AGAGCACCAGCAGGATGAAAATA 60.054 43.478 0.35 0.00 45.49 1.40
2596 3049 1.074405 AGAGCACCAGCAGGATGAAAA 59.926 47.619 0.35 0.00 45.49 2.29
2597 3050 0.694771 AGAGCACCAGCAGGATGAAA 59.305 50.000 0.35 0.00 45.49 2.69
2598 3051 1.571955 TAGAGCACCAGCAGGATGAA 58.428 50.000 0.35 0.00 45.49 2.57
2600 3053 3.181462 TGTTATAGAGCACCAGCAGGATG 60.181 47.826 0.35 0.00 45.49 3.51
2650 3464 0.108377 TGGCAGCATCGACGTACATT 60.108 50.000 0.00 0.00 0.00 2.71
2654 3468 1.407618 ACTTATGGCAGCATCGACGTA 59.592 47.619 0.00 0.00 0.00 3.57
2717 3531 2.479566 ACACCAGCATCAACGAAGAT 57.520 45.000 0.00 0.00 0.00 2.40
2768 3582 3.692593 TCGATTTCGAGGACACACTCATA 59.307 43.478 0.00 0.00 44.22 2.15
2807 3621 0.525668 CGGGATCAACCTTCGACGAG 60.526 60.000 0.00 0.00 38.98 4.18
2810 3624 0.245539 TGTCGGGATCAACCTTCGAC 59.754 55.000 7.15 7.15 46.13 4.20
2830 3644 2.135933 CAGTCTTCAAGAACACCGTCC 58.864 52.381 0.00 0.00 0.00 4.79
2968 3782 8.352942 GTCAATTTTCAGATCTACCTTTGTGTT 58.647 33.333 0.00 0.00 0.00 3.32
2991 3805 3.411446 CAGTTGCTCCCAAATACTGTCA 58.589 45.455 0.00 0.00 31.68 3.58
2993 3807 2.162681 GCAGTTGCTCCCAAATACTGT 58.837 47.619 0.00 0.00 38.21 3.55
3042 3856 8.640651 TGCGTATTATAGACAGGGTGTAAAATA 58.359 33.333 0.00 0.00 0.00 1.40
3061 3875 4.388485 TGATCATGGCTACATTGCGTATT 58.612 39.130 0.00 0.00 34.35 1.89



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.