Multiple sequence alignment - TraesCS1B01G191700
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS1B01G191700
chr1B
100.000
3142
0
0
1
3142
342650514
342647373
0.000000e+00
5803.0
1
TraesCS1B01G191700
chr1B
92.453
53
1
2
249
300
38918917
38918967
4.350000e-09
73.1
2
TraesCS1B01G191700
chr1D
95.616
2304
54
10
328
2594
237143102
237145395
0.000000e+00
3651.0
3
TraesCS1B01G191700
chr1D
93.645
535
26
3
2608
3142
237145770
237146296
0.000000e+00
793.0
4
TraesCS1B01G191700
chr1D
96.000
175
6
1
77
250
237142498
237142672
1.840000e-72
283.0
5
TraesCS1B01G191700
chr1D
94.118
51
3
0
250
300
476559288
476559338
9.340000e-11
78.7
6
TraesCS1B01G191700
chr1D
100.000
39
0
0
299
337
237143055
237143093
4.350000e-09
73.1
7
TraesCS1B01G191700
chr1A
95.189
2224
61
8
404
2594
308569412
308571622
0.000000e+00
3472.0
8
TraesCS1B01G191700
chr1A
92.139
547
37
4
2597
3142
308571662
308572203
0.000000e+00
767.0
9
TraesCS1B01G191700
chr1A
95.984
249
8
2
7
253
308569056
308569304
1.360000e-108
403.0
10
TraesCS1B01G191700
chr1A
100.000
61
0
0
330
390
308569366
308569426
2.560000e-21
113.0
11
TraesCS1B01G191700
chr1A
100.000
45
0
0
299
343
308569303
308569347
2.010000e-12
84.2
12
TraesCS1B01G191700
chr1A
93.878
49
3
0
252
300
568532211
568532163
1.210000e-09
75.0
13
TraesCS1B01G191700
chrUn
98.000
50
0
1
252
300
466887437
466887388
5.580000e-13
86.1
14
TraesCS1B01G191700
chrUn
90.909
55
3
2
252
304
33590691
33590745
4.350000e-09
73.1
15
TraesCS1B01G191700
chrUn
90.909
55
3
2
252
304
391871621
391871567
4.350000e-09
73.1
16
TraesCS1B01G191700
chr5B
98.000
50
0
1
252
300
507061300
507061349
5.580000e-13
86.1
17
TraesCS1B01G191700
chr5B
92.308
52
1
1
252
300
457724181
457724130
1.560000e-08
71.3
18
TraesCS1B01G191700
chr5A
78.322
143
16
11
2442
2583
707723993
707724121
9.340000e-11
78.7
19
TraesCS1B01G191700
chr5A
77.622
143
17
11
2442
2583
551483569
551483441
4.350000e-09
73.1
20
TraesCS1B01G191700
chr6A
78.261
115
25
0
1419
1533
123372118
123372004
1.210000e-09
75.0
21
TraesCS1B01G191700
chr7B
92.308
52
1
1
252
300
745260575
745260626
1.560000e-08
71.3
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS1B01G191700
chr1B
342647373
342650514
3141
True
5803.000
5803
100.00000
1
3142
1
chr1B.!!$R1
3141
1
TraesCS1B01G191700
chr1D
237142498
237146296
3798
False
1200.025
3651
96.31525
77
3142
4
chr1D.!!$F2
3065
2
TraesCS1B01G191700
chr1A
308569056
308572203
3147
False
967.840
3472
96.66240
7
3142
5
chr1A.!!$F1
3135
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
274
658
0.478507
CCCTCTGTTCCAAGTTGGGT
59.521
55.0
21.85
0.0
38.32
4.51
F
1527
1947
0.108804
ACGATGACAACGGCGAAGAT
60.109
50.0
16.62
0.0
34.93
2.40
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
1821
2241
0.031585
CTTGGCATGCATGGGAATCG
59.968
55.0
27.34
0.91
0.0
3.34
R
2650
3464
0.108377
TGGCAGCATCGACGTACATT
60.108
50.0
0.00
0.00
0.0
2.71
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
43
44
5.041940
CGAATCTAGACCTTTTCCTTACGG
58.958
45.833
0.00
0.00
0.00
4.02
156
158
2.769602
TCTACCTTCGCCCCTAAGAT
57.230
50.000
0.00
0.00
0.00
2.40
186
188
3.831333
TGGAGGTACCATGTACGTAACAA
59.169
43.478
15.94
0.00
44.64
2.83
253
637
2.606272
GCCACACCACGCTATAAGTTAC
59.394
50.000
0.00
0.00
0.00
2.50
254
638
3.677976
GCCACACCACGCTATAAGTTACT
60.678
47.826
0.00
0.00
0.00
2.24
255
639
4.110482
CCACACCACGCTATAAGTTACTC
58.890
47.826
0.00
0.00
0.00
2.59
256
640
4.110482
CACACCACGCTATAAGTTACTCC
58.890
47.826
0.00
0.00
0.00
3.85
257
641
3.131755
ACACCACGCTATAAGTTACTCCC
59.868
47.826
0.00
0.00
0.00
4.30
258
642
3.383825
CACCACGCTATAAGTTACTCCCT
59.616
47.826
0.00
0.00
0.00
4.20
259
643
3.635836
ACCACGCTATAAGTTACTCCCTC
59.364
47.826
0.00
0.00
0.00
4.30
260
644
3.890147
CCACGCTATAAGTTACTCCCTCT
59.110
47.826
0.00
0.00
0.00
3.69
261
645
4.261656
CCACGCTATAAGTTACTCCCTCTG
60.262
50.000
0.00
0.00
0.00
3.35
262
646
4.338682
CACGCTATAAGTTACTCCCTCTGT
59.661
45.833
0.00
0.00
0.00
3.41
263
647
4.954826
ACGCTATAAGTTACTCCCTCTGTT
59.045
41.667
0.00
0.00
0.00
3.16
264
648
5.067544
ACGCTATAAGTTACTCCCTCTGTTC
59.932
44.000
0.00
0.00
0.00
3.18
265
649
5.507650
CGCTATAAGTTACTCCCTCTGTTCC
60.508
48.000
0.00
0.00
0.00
3.62
266
650
5.363005
GCTATAAGTTACTCCCTCTGTTCCA
59.637
44.000
0.00
0.00
0.00
3.53
267
651
6.127140
GCTATAAGTTACTCCCTCTGTTCCAA
60.127
42.308
0.00
0.00
0.00
3.53
268
652
4.625607
AAGTTACTCCCTCTGTTCCAAG
57.374
45.455
0.00
0.00
0.00
3.61
269
653
3.588569
AGTTACTCCCTCTGTTCCAAGT
58.411
45.455
0.00
0.00
0.00
3.16
270
654
3.974642
AGTTACTCCCTCTGTTCCAAGTT
59.025
43.478
0.00
0.00
0.00
2.66
271
655
2.938956
ACTCCCTCTGTTCCAAGTTG
57.061
50.000
0.00
0.00
0.00
3.16
272
656
1.421646
ACTCCCTCTGTTCCAAGTTGG
59.578
52.381
16.36
16.36
39.43
3.77
273
657
0.771127
TCCCTCTGTTCCAAGTTGGG
59.229
55.000
21.85
5.82
38.32
4.12
274
658
0.478507
CCCTCTGTTCCAAGTTGGGT
59.521
55.000
21.85
0.00
38.32
4.51
275
659
1.545651
CCCTCTGTTCCAAGTTGGGTC
60.546
57.143
21.85
14.67
38.32
4.46
276
660
1.142870
CCTCTGTTCCAAGTTGGGTCA
59.857
52.381
21.85
18.01
38.32
4.02
277
661
2.224867
CCTCTGTTCCAAGTTGGGTCAT
60.225
50.000
21.85
0.00
38.32
3.06
278
662
3.077359
CTCTGTTCCAAGTTGGGTCATC
58.923
50.000
21.85
8.51
38.32
2.92
279
663
2.711009
TCTGTTCCAAGTTGGGTCATCT
59.289
45.455
21.85
0.00
38.32
2.90
280
664
3.907474
TCTGTTCCAAGTTGGGTCATCTA
59.093
43.478
21.85
0.00
38.32
1.98
281
665
4.536090
TCTGTTCCAAGTTGGGTCATCTAT
59.464
41.667
21.85
0.00
38.32
1.98
282
666
5.014123
TCTGTTCCAAGTTGGGTCATCTATT
59.986
40.000
21.85
0.00
38.32
1.73
283
667
5.640147
TGTTCCAAGTTGGGTCATCTATTT
58.360
37.500
21.85
0.00
38.32
1.40
284
668
6.074648
TGTTCCAAGTTGGGTCATCTATTTT
58.925
36.000
21.85
0.00
38.32
1.82
285
669
6.015519
TGTTCCAAGTTGGGTCATCTATTTTG
60.016
38.462
21.85
0.00
38.32
2.44
286
670
5.016173
TCCAAGTTGGGTCATCTATTTTGG
58.984
41.667
21.85
0.00
38.32
3.28
287
671
5.016173
CCAAGTTGGGTCATCTATTTTGGA
58.984
41.667
14.64
0.00
32.67
3.53
288
672
5.480073
CCAAGTTGGGTCATCTATTTTGGAA
59.520
40.000
14.64
0.00
32.67
3.53
289
673
6.389906
CAAGTTGGGTCATCTATTTTGGAAC
58.610
40.000
0.00
0.00
0.00
3.62
290
674
4.700213
AGTTGGGTCATCTATTTTGGAACG
59.300
41.667
0.00
0.00
0.00
3.95
291
675
3.616219
TGGGTCATCTATTTTGGAACGG
58.384
45.455
0.00
0.00
0.00
4.44
292
676
3.264706
TGGGTCATCTATTTTGGAACGGA
59.735
43.478
0.00
0.00
0.00
4.69
293
677
3.877508
GGGTCATCTATTTTGGAACGGAG
59.122
47.826
0.00
0.00
0.00
4.63
294
678
3.877508
GGTCATCTATTTTGGAACGGAGG
59.122
47.826
0.00
0.00
0.00
4.30
295
679
3.877508
GTCATCTATTTTGGAACGGAGGG
59.122
47.826
0.00
0.00
0.00
4.30
296
680
3.778075
TCATCTATTTTGGAACGGAGGGA
59.222
43.478
0.00
0.00
0.00
4.20
297
681
3.906720
TCTATTTTGGAACGGAGGGAG
57.093
47.619
0.00
0.00
0.00
4.30
298
682
3.178865
TCTATTTTGGAACGGAGGGAGT
58.821
45.455
0.00
0.00
0.00
3.85
299
683
4.355549
TCTATTTTGGAACGGAGGGAGTA
58.644
43.478
0.00
0.00
0.00
2.59
533
953
4.007644
TGCGGTCTCCTGCCACTG
62.008
66.667
0.00
0.00
0.00
3.66
1475
1895
1.152652
AGATCGAGGAGTCGGCCAT
60.153
57.895
2.24
0.00
46.80
4.40
1527
1947
0.108804
ACGATGACAACGGCGAAGAT
60.109
50.000
16.62
0.00
34.93
2.40
1533
1953
2.047655
AACGGCGAAGATGCGGAA
60.048
55.556
16.62
0.00
38.43
4.30
1669
2089
1.153005
GAGCAGGAGGCCATTGAGG
60.153
63.158
5.01
0.00
46.50
3.86
1796
2216
4.617530
CGACAAGGATCTCGACAGGTAAAA
60.618
45.833
0.00
0.00
31.24
1.52
1797
2217
5.223449
ACAAGGATCTCGACAGGTAAAAA
57.777
39.130
0.00
0.00
0.00
1.94
1809
2229
2.873472
CAGGTAAAAATACGCCGCCATA
59.127
45.455
0.00
0.00
0.00
2.74
1821
2241
1.599542
GCCGCCATAGTCTTGAACATC
59.400
52.381
0.00
0.00
0.00
3.06
1827
2247
4.212214
GCCATAGTCTTGAACATCGATTCC
59.788
45.833
0.00
0.00
0.00
3.01
1835
2255
2.619646
TGAACATCGATTCCCATGCATG
59.380
45.455
20.19
20.19
0.00
4.06
1922
2366
2.538939
GGATTATTTCAAGCGTGCGGTC
60.539
50.000
0.00
0.00
0.00
4.79
2066
2510
2.735772
CCACCACCGGAGCAGCTAT
61.736
63.158
9.46
0.00
0.00
2.97
2087
2531
0.898320
CGTGGTTCCTCTGGATGACT
59.102
55.000
0.00
0.00
0.00
3.41
2417
2870
3.658725
AGTACAGTAGGGCCTCATCAAT
58.341
45.455
10.74
0.00
0.00
2.57
2418
2871
4.816126
AGTACAGTAGGGCCTCATCAATA
58.184
43.478
10.74
0.00
0.00
1.90
2584
3037
4.577693
AGTGCAGCTGTGGTATGATATTTG
59.422
41.667
16.64
0.00
0.00
2.32
2594
3047
7.390823
TGTGGTATGATATTTGCGGTATACAT
58.609
34.615
5.01
0.00
0.00
2.29
2596
3049
9.542462
GTGGTATGATATTTGCGGTATACATAT
57.458
33.333
5.01
0.00
0.00
1.78
2650
3464
6.127535
CCTGACTTACTAATCTTTACCGGACA
60.128
42.308
9.46
0.00
0.00
4.02
2654
3468
7.618137
ACTTACTAATCTTTACCGGACAATGT
58.382
34.615
9.46
0.00
0.00
2.71
2717
3531
2.421952
GCATCCCAGCTCCAATCTTGTA
60.422
50.000
0.00
0.00
0.00
2.41
2768
3582
3.620966
GCTTCTGAAGGTCAATGTAGCCT
60.621
47.826
18.38
0.00
0.00
4.58
2807
3621
3.637998
TCGACGTCCTTCATATTAGCC
57.362
47.619
10.58
0.00
0.00
3.93
2810
3624
3.566523
GACGTCCTTCATATTAGCCTCG
58.433
50.000
3.51
0.00
0.00
4.63
2830
3644
0.530744
TCGAAGGTTGATCCCGACAG
59.469
55.000
0.00
0.00
36.75
3.51
2848
3662
2.135933
CAGGACGGTGTTCTTGAAGAC
58.864
52.381
0.00
2.52
0.00
3.01
2993
3807
8.463930
AACACAAAGGTAGATCTGAAAATTGA
57.536
30.769
5.18
0.00
0.00
2.57
3061
3875
8.818860
ACACAAGTATTTTACACCCTGTCTATA
58.181
33.333
0.00
0.00
0.00
1.31
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
43
44
7.481642
TCCAGTTTAGTATCAGTCGATCTTTC
58.518
38.462
0.00
0.00
32.73
2.62
50
51
6.401153
GCTGTTTTCCAGTTTAGTATCAGTCG
60.401
42.308
0.00
0.00
43.55
4.18
186
188
4.829492
GGCTGGAAAGATAGCATACCAAAT
59.171
41.667
0.00
0.00
41.63
2.32
253
637
1.271597
CCCAACTTGGAACAGAGGGAG
60.272
57.143
9.61
0.00
40.96
4.30
254
638
0.771127
CCCAACTTGGAACAGAGGGA
59.229
55.000
9.61
0.00
40.96
4.20
255
639
0.478507
ACCCAACTTGGAACAGAGGG
59.521
55.000
9.61
0.00
40.96
4.30
256
640
1.142870
TGACCCAACTTGGAACAGAGG
59.857
52.381
9.61
0.00
40.96
3.69
257
641
2.638480
TGACCCAACTTGGAACAGAG
57.362
50.000
9.61
0.00
40.96
3.35
258
642
2.711009
AGATGACCCAACTTGGAACAGA
59.289
45.455
9.61
0.00
40.96
3.41
259
643
3.146104
AGATGACCCAACTTGGAACAG
57.854
47.619
9.61
0.00
40.96
3.16
260
644
4.927267
ATAGATGACCCAACTTGGAACA
57.073
40.909
9.61
8.99
40.96
3.18
261
645
6.389906
CAAAATAGATGACCCAACTTGGAAC
58.610
40.000
9.61
3.66
40.96
3.62
262
646
5.480073
CCAAAATAGATGACCCAACTTGGAA
59.520
40.000
9.61
0.00
40.96
3.53
263
647
5.016173
CCAAAATAGATGACCCAACTTGGA
58.984
41.667
9.61
0.00
40.96
3.53
264
648
5.016173
TCCAAAATAGATGACCCAACTTGG
58.984
41.667
0.12
0.12
37.25
3.61
265
649
6.389906
GTTCCAAAATAGATGACCCAACTTG
58.610
40.000
0.00
0.00
0.00
3.16
266
650
5.183140
CGTTCCAAAATAGATGACCCAACTT
59.817
40.000
0.00
0.00
0.00
2.66
267
651
4.700213
CGTTCCAAAATAGATGACCCAACT
59.300
41.667
0.00
0.00
0.00
3.16
268
652
4.142469
CCGTTCCAAAATAGATGACCCAAC
60.142
45.833
0.00
0.00
0.00
3.77
269
653
4.013728
CCGTTCCAAAATAGATGACCCAA
58.986
43.478
0.00
0.00
0.00
4.12
270
654
3.264706
TCCGTTCCAAAATAGATGACCCA
59.735
43.478
0.00
0.00
0.00
4.51
271
655
3.877508
CTCCGTTCCAAAATAGATGACCC
59.122
47.826
0.00
0.00
0.00
4.46
272
656
3.877508
CCTCCGTTCCAAAATAGATGACC
59.122
47.826
0.00
0.00
0.00
4.02
273
657
3.877508
CCCTCCGTTCCAAAATAGATGAC
59.122
47.826
0.00
0.00
0.00
3.06
274
658
3.778075
TCCCTCCGTTCCAAAATAGATGA
59.222
43.478
0.00
0.00
0.00
2.92
275
659
4.130118
CTCCCTCCGTTCCAAAATAGATG
58.870
47.826
0.00
0.00
0.00
2.90
276
660
3.780850
ACTCCCTCCGTTCCAAAATAGAT
59.219
43.478
0.00
0.00
0.00
1.98
277
661
3.178865
ACTCCCTCCGTTCCAAAATAGA
58.821
45.455
0.00
0.00
0.00
1.98
278
662
3.629142
ACTCCCTCCGTTCCAAAATAG
57.371
47.619
0.00
0.00
0.00
1.73
279
663
5.502089
TTTACTCCCTCCGTTCCAAAATA
57.498
39.130
0.00
0.00
0.00
1.40
280
664
4.376225
TTTACTCCCTCCGTTCCAAAAT
57.624
40.909
0.00
0.00
0.00
1.82
281
665
3.860968
TTTACTCCCTCCGTTCCAAAA
57.139
42.857
0.00
0.00
0.00
2.44
282
666
3.479489
GTTTTACTCCCTCCGTTCCAAA
58.521
45.455
0.00
0.00
0.00
3.28
283
667
2.548493
CGTTTTACTCCCTCCGTTCCAA
60.548
50.000
0.00
0.00
0.00
3.53
284
668
1.001181
CGTTTTACTCCCTCCGTTCCA
59.999
52.381
0.00
0.00
0.00
3.53
285
669
1.718396
CGTTTTACTCCCTCCGTTCC
58.282
55.000
0.00
0.00
0.00
3.62
286
670
1.073964
GCGTTTTACTCCCTCCGTTC
58.926
55.000
0.00
0.00
0.00
3.95
287
671
0.683412
AGCGTTTTACTCCCTCCGTT
59.317
50.000
0.00
0.00
0.00
4.44
288
672
0.683412
AAGCGTTTTACTCCCTCCGT
59.317
50.000
0.00
0.00
0.00
4.69
289
673
1.730612
GAAAGCGTTTTACTCCCTCCG
59.269
52.381
0.00
0.00
0.00
4.63
290
674
1.730612
CGAAAGCGTTTTACTCCCTCC
59.269
52.381
0.00
0.00
0.00
4.30
403
822
2.093447
GGGTGCTAGCTACTTGTCACAT
60.093
50.000
17.23
0.00
0.00
3.21
533
953
2.584694
GAGTGAGCTAGCTGCCGC
60.585
66.667
24.99
15.40
44.23
6.53
535
955
1.153469
GTGGAGTGAGCTAGCTGCC
60.153
63.158
24.99
17.50
44.23
4.85
1527
1947
2.284798
GATCGTCTGCCTCTTCCGCA
62.285
60.000
0.00
0.00
34.41
5.69
1533
1953
0.393132
TCGTCAGATCGTCTGCCTCT
60.393
55.000
9.34
0.00
43.95
3.69
1796
2216
1.411246
TCAAGACTATGGCGGCGTATT
59.589
47.619
11.75
6.03
0.00
1.89
1797
2217
1.037493
TCAAGACTATGGCGGCGTAT
58.963
50.000
11.75
6.38
0.00
3.06
1809
2229
3.981071
TGGGAATCGATGTTCAAGACT
57.019
42.857
0.00
0.00
0.00
3.24
1821
2241
0.031585
CTTGGCATGCATGGGAATCG
59.968
55.000
27.34
0.91
0.00
3.34
1835
2255
0.447801
CGTAACAGGTGCATCTTGGC
59.552
55.000
0.00
0.00
0.00
4.52
1904
2348
0.440758
CGACCGCACGCTTGAAATAA
59.559
50.000
0.00
0.00
0.00
1.40
2066
2510
1.191489
TCATCCAGAGGAACCACGCA
61.191
55.000
0.00
0.00
34.34
5.24
2087
2531
3.625897
CAGGTCTCCACACCGCCA
61.626
66.667
0.00
0.00
41.90
5.69
2168
2612
7.115378
GTCGGTCTTTAATTGTCTTTAACTCGA
59.885
37.037
0.00
0.00
0.00
4.04
2169
2613
7.225397
GTCGGTCTTTAATTGTCTTTAACTCG
58.775
38.462
0.00
0.00
0.00
4.18
2170
2614
7.387122
AGGTCGGTCTTTAATTGTCTTTAACTC
59.613
37.037
0.00
0.00
0.00
3.01
2171
2615
7.222161
AGGTCGGTCTTTAATTGTCTTTAACT
58.778
34.615
0.00
0.00
0.00
2.24
2172
2616
7.430992
AGGTCGGTCTTTAATTGTCTTTAAC
57.569
36.000
0.00
0.00
0.00
2.01
2173
2617
6.366877
CGAGGTCGGTCTTTAATTGTCTTTAA
59.633
38.462
0.00
0.00
35.37
1.52
2354
2807
4.985413
ACAACATCAACATTATTCGCCTG
58.015
39.130
0.00
0.00
0.00
4.85
2417
2870
6.435591
TGCTTTATTCCAAATCCACACATGTA
59.564
34.615
0.00
0.00
0.00
2.29
2418
2871
5.245751
TGCTTTATTCCAAATCCACACATGT
59.754
36.000
0.00
0.00
0.00
3.21
2584
3037
5.643777
AGCAGGATGAAAATATGTATACCGC
59.356
40.000
0.00
0.00
39.69
5.68
2594
3047
3.054139
AGAGCACCAGCAGGATGAAAATA
60.054
43.478
0.35
0.00
45.49
1.40
2596
3049
1.074405
AGAGCACCAGCAGGATGAAAA
59.926
47.619
0.35
0.00
45.49
2.29
2597
3050
0.694771
AGAGCACCAGCAGGATGAAA
59.305
50.000
0.35
0.00
45.49
2.69
2598
3051
1.571955
TAGAGCACCAGCAGGATGAA
58.428
50.000
0.35
0.00
45.49
2.57
2600
3053
3.181462
TGTTATAGAGCACCAGCAGGATG
60.181
47.826
0.35
0.00
45.49
3.51
2650
3464
0.108377
TGGCAGCATCGACGTACATT
60.108
50.000
0.00
0.00
0.00
2.71
2654
3468
1.407618
ACTTATGGCAGCATCGACGTA
59.592
47.619
0.00
0.00
0.00
3.57
2717
3531
2.479566
ACACCAGCATCAACGAAGAT
57.520
45.000
0.00
0.00
0.00
2.40
2768
3582
3.692593
TCGATTTCGAGGACACACTCATA
59.307
43.478
0.00
0.00
44.22
2.15
2807
3621
0.525668
CGGGATCAACCTTCGACGAG
60.526
60.000
0.00
0.00
38.98
4.18
2810
3624
0.245539
TGTCGGGATCAACCTTCGAC
59.754
55.000
7.15
7.15
46.13
4.20
2830
3644
2.135933
CAGTCTTCAAGAACACCGTCC
58.864
52.381
0.00
0.00
0.00
4.79
2968
3782
8.352942
GTCAATTTTCAGATCTACCTTTGTGTT
58.647
33.333
0.00
0.00
0.00
3.32
2991
3805
3.411446
CAGTTGCTCCCAAATACTGTCA
58.589
45.455
0.00
0.00
31.68
3.58
2993
3807
2.162681
GCAGTTGCTCCCAAATACTGT
58.837
47.619
0.00
0.00
38.21
3.55
3042
3856
8.640651
TGCGTATTATAGACAGGGTGTAAAATA
58.359
33.333
0.00
0.00
0.00
1.40
3061
3875
4.388485
TGATCATGGCTACATTGCGTATT
58.612
39.130
0.00
0.00
34.35
1.89
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.