Multiple sequence alignment - TraesCS1B01G191600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G191600 chr1B 100.000 6345 0 0 1 6345 342642665 342649009 0.000000e+00 11718.0
1 TraesCS1B01G191600 chr1B 97.890 237 5 0 569 805 531113725 531113489 1.650000e-110 411.0
2 TraesCS1B01G191600 chr1A 93.583 1122 34 7 5257 6345 308571622 308570506 0.000000e+00 1639.0
3 TraesCS1B01G191600 chr1A 93.804 920 49 5 4338 5254 308572576 308571662 0.000000e+00 1376.0
4 TraesCS1B01G191600 chr1A 89.689 931 58 18 801 1705 308576320 308575402 0.000000e+00 1153.0
5 TraesCS1B01G191600 chr1A 84.948 1063 125 15 2280 3313 308574755 308573699 0.000000e+00 1044.0
6 TraesCS1B01G191600 chr1A 91.231 707 50 6 3345 4044 308573464 308572763 0.000000e+00 952.0
7 TraesCS1B01G191600 chr1A 88.350 206 22 2 4080 4285 308572774 308572571 4.910000e-61 246.0
8 TraesCS1B01G191600 chr1A 80.226 354 42 19 1785 2118 308575372 308575027 2.290000e-59 241.0
9 TraesCS1B01G191600 chr1A 95.833 48 2 0 523 570 308578019 308577972 1.900000e-10 78.7
10 TraesCS1B01G191600 chr1D 93.494 1122 35 9 5257 6345 237145395 237144279 0.000000e+00 1633.0
11 TraesCS1B01G191600 chr1D 95.149 907 36 3 4337 5243 237146668 237145770 0.000000e+00 1424.0
12 TraesCS1B01G191600 chr1D 91.138 914 41 17 801 1706 237150070 237149189 0.000000e+00 1203.0
13 TraesCS1B01G191600 chr1D 85.857 1103 121 14 1846 2920 237148973 237147878 0.000000e+00 1140.0
14 TraesCS1B01G191600 chr1D 91.888 715 52 6 3570 4283 237147369 237146660 0.000000e+00 994.0
15 TraesCS1B01G191600 chr1D 91.080 213 15 3 3354 3563 237147627 237147416 1.040000e-72 285.0
16 TraesCS1B01G191600 chr1D 89.623 106 11 0 1743 1848 237149191 237149086 1.110000e-27 135.0
17 TraesCS1B01G191600 chr1D 83.621 116 19 0 328 443 237150313 237150198 6.730000e-20 110.0
18 TraesCS1B01G191600 chr5D 89.423 520 49 2 1 520 400366901 400366388 0.000000e+00 651.0
19 TraesCS1B01G191600 chr5D 92.213 244 19 0 569 812 10037798 10037555 4.710000e-91 346.0
20 TraesCS1B01G191600 chr5D 91.489 235 17 3 570 803 234025039 234024807 2.850000e-83 320.0
21 TraesCS1B01G191600 chr2D 89.080 522 42 9 1 516 186954929 186954417 8.970000e-178 634.0
22 TraesCS1B01G191600 chr2D 88.439 519 52 6 1 517 387480410 387480922 2.510000e-173 619.0
23 TraesCS1B01G191600 chr3D 88.314 522 54 2 1 520 480356447 480355931 2.510000e-173 619.0
24 TraesCS1B01G191600 chr3D 87.692 520 59 1 1 520 281006904 281006390 9.100000e-168 601.0
25 TraesCS1B01G191600 chr3D 97.222 36 1 0 3323 3358 523300540 523300505 1.910000e-05 62.1
26 TraesCS1B01G191600 chr6D 88.077 520 49 5 1 517 372780026 372780535 7.040000e-169 604.0
27 TraesCS1B01G191600 chr6D 91.837 49 4 0 3314 3362 1642806 1642854 1.140000e-07 69.4
28 TraesCS1B01G191600 chr4D 86.346 520 60 6 1 517 115401683 115402194 2.000000e-154 556.0
29 TraesCS1B01G191600 chr4D 77.236 123 27 1 3989 4110 216535366 216535488 3.170000e-08 71.3
30 TraesCS1B01G191600 chr3B 85.660 523 63 7 1 520 313809461 313808948 2.010000e-149 540.0
31 TraesCS1B01G191600 chr5B 85.305 524 71 2 1 524 369163348 369162831 2.600000e-148 536.0
32 TraesCS1B01G191600 chr3A 96.825 252 7 1 571 821 114783196 114782945 2.740000e-113 420.0
33 TraesCS1B01G191600 chr3A 82.892 415 63 8 4354 4765 265370315 265370724 3.610000e-97 366.0
34 TraesCS1B01G191600 chr3A 83.221 298 45 5 4470 4765 42681383 42681677 1.050000e-67 268.0
35 TraesCS1B01G191600 chr2A 97.131 244 6 1 562 805 257856773 257856531 1.650000e-110 411.0
36 TraesCS1B01G191600 chr2A 97.222 36 1 0 3323 3358 56911272 56911237 1.910000e-05 62.1
37 TraesCS1B01G191600 chr5A 78.322 143 16 11 5268 5409 707724121 707723993 1.900000e-10 78.7
38 TraesCS1B01G191600 chr5A 77.622 143 17 11 5268 5409 551483441 551483569 8.820000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G191600 chr1B 342642665 342649009 6344 False 11718.0000 11718 100.00000 1 6345 1 chr1B.!!$F1 6344
1 TraesCS1B01G191600 chr1A 308570506 308578019 7513 True 841.2125 1639 89.70800 523 6345 8 chr1A.!!$R1 5822
2 TraesCS1B01G191600 chr1D 237144279 237150313 6034 True 865.5000 1633 90.23125 328 6345 8 chr1D.!!$R1 6017
3 TraesCS1B01G191600 chr5D 400366388 400366901 513 True 651.0000 651 89.42300 1 520 1 chr5D.!!$R3 519
4 TraesCS1B01G191600 chr2D 186954417 186954929 512 True 634.0000 634 89.08000 1 516 1 chr2D.!!$R1 515
5 TraesCS1B01G191600 chr2D 387480410 387480922 512 False 619.0000 619 88.43900 1 517 1 chr2D.!!$F1 516
6 TraesCS1B01G191600 chr3D 480355931 480356447 516 True 619.0000 619 88.31400 1 520 1 chr3D.!!$R2 519
7 TraesCS1B01G191600 chr3D 281006390 281006904 514 True 601.0000 601 87.69200 1 520 1 chr3D.!!$R1 519
8 TraesCS1B01G191600 chr6D 372780026 372780535 509 False 604.0000 604 88.07700 1 517 1 chr6D.!!$F2 516
9 TraesCS1B01G191600 chr4D 115401683 115402194 511 False 556.0000 556 86.34600 1 517 1 chr4D.!!$F1 516
10 TraesCS1B01G191600 chr3B 313808948 313809461 513 True 540.0000 540 85.66000 1 520 1 chr3B.!!$R1 519
11 TraesCS1B01G191600 chr5B 369162831 369163348 517 True 536.0000 536 85.30500 1 524 1 chr5B.!!$R1 523

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
743 851 0.098728 GATCCAAACATTCGCCCACG 59.901 55.0 0.00 0.00 42.01 4.94 F
1808 3293 0.250901 ACGAAGCCATCAAGCAACCT 60.251 50.0 0.00 0.00 34.23 3.50 F
2915 4663 0.032017 TGAGCTAAGGGGGAGAGGAC 60.032 60.0 0.00 0.00 0.00 3.85 F
3068 4816 0.033228 CATCTAAGGCTGCCTCCTCG 59.967 60.0 23.61 10.59 34.82 4.63 F
4219 6411 0.028902 GACACTTTGGTGCGGACAAC 59.971 55.0 9.96 0.00 46.57 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2106 3729 0.036765 TCTACGGTTGCGATGCCTTT 60.037 50.0 0.00 0.00 0.00 3.11 R
3049 4797 0.033228 CGAGGAGGCAGCCTTAGATG 59.967 60.0 17.46 1.06 38.73 2.90 R
4197 6389 0.586802 GTCCGCACCAAAGTGTCTTC 59.413 55.0 0.00 0.00 46.35 2.87 R
5019 7215 0.530744 TCGAAGGTTGATCCCGACAG 59.469 55.0 0.00 0.00 36.75 3.51 R
5762 8328 0.898320 CGTGGTTCCTCTGGATGACT 59.102 55.0 0.00 0.00 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
103 104 2.567049 CGGACTCCGCGAAAGTCT 59.433 61.111 28.60 6.47 41.17 3.24
141 142 2.512286 CGACATGGTGGCGCAGAT 60.512 61.111 10.83 0.00 44.33 2.90
154 155 2.106938 CAGATGCGGCGAGGCTAA 59.893 61.111 12.98 0.00 0.00 3.09
164 166 1.115930 GCGAGGCTAATGAGAGGGGA 61.116 60.000 0.00 0.00 0.00 4.81
176 178 1.376942 GAGGGGACGAGACGAGTGA 60.377 63.158 0.00 0.00 0.00 3.41
183 185 3.800863 GAGACGAGTGAGCGGCGA 61.801 66.667 12.98 0.00 45.90 5.54
195 197 2.738521 CGGCGAACAGAGTGTGGG 60.739 66.667 0.00 0.00 0.00 4.61
288 291 2.855514 GCTGGAGCGCCAAAACCAA 61.856 57.895 11.38 0.00 45.41 3.67
359 366 3.680156 GCCAAAATCAGGGCGACA 58.320 55.556 0.00 0.00 40.93 4.35
366 373 0.680921 AATCAGGGCGACAACATGGG 60.681 55.000 0.00 0.00 0.00 4.00
376 383 2.120282 CAACATGGGCGCTGGCATA 61.120 57.895 7.64 0.00 42.47 3.14
378 385 0.969917 AACATGGGCGCTGGCATAAA 60.970 50.000 7.64 0.00 42.47 1.40
436 444 0.447801 GCGCACTGTCGATCCAAATT 59.552 50.000 0.30 0.00 0.00 1.82
450 458 6.321181 TCGATCCAAATTTAAAAGAGGATGGG 59.679 38.462 18.01 12.03 36.09 4.00
453 461 4.081697 CCAAATTTAAAAGAGGATGGGCGT 60.082 41.667 0.00 0.00 0.00 5.68
565 601 1.298859 GCCGCCTGTTCGATCAGTTT 61.299 55.000 19.45 0.00 34.02 2.66
570 606 3.304559 CGCCTGTTCGATCAGTTTCTTAG 59.695 47.826 19.45 6.14 34.02 2.18
571 607 3.619038 GCCTGTTCGATCAGTTTCTTAGG 59.381 47.826 19.45 6.32 34.02 2.69
573 609 4.322801 CCTGTTCGATCAGTTTCTTAGGGT 60.323 45.833 19.45 0.00 34.02 4.34
575 611 4.039973 TGTTCGATCAGTTTCTTAGGGTGT 59.960 41.667 0.00 0.00 0.00 4.16
576 612 4.188247 TCGATCAGTTTCTTAGGGTGTG 57.812 45.455 0.00 0.00 0.00 3.82
577 613 3.576982 TCGATCAGTTTCTTAGGGTGTGT 59.423 43.478 0.00 0.00 0.00 3.72
579 615 4.755123 CGATCAGTTTCTTAGGGTGTGTTT 59.245 41.667 0.00 0.00 0.00 2.83
580 616 5.334105 CGATCAGTTTCTTAGGGTGTGTTTG 60.334 44.000 0.00 0.00 0.00 2.93
581 617 4.204012 TCAGTTTCTTAGGGTGTGTTTGG 58.796 43.478 0.00 0.00 0.00 3.28
582 618 4.080243 TCAGTTTCTTAGGGTGTGTTTGGA 60.080 41.667 0.00 0.00 0.00 3.53
583 619 4.827284 CAGTTTCTTAGGGTGTGTTTGGAT 59.173 41.667 0.00 0.00 0.00 3.41
584 620 4.827284 AGTTTCTTAGGGTGTGTTTGGATG 59.173 41.667 0.00 0.00 0.00 3.51
588 696 0.827507 AGGGTGTGTTTGGATGGTGC 60.828 55.000 0.00 0.00 0.00 5.01
592 700 1.228862 GTGTTTGGATGGTGCCCCT 60.229 57.895 0.00 0.00 0.00 4.79
593 701 1.228831 TGTTTGGATGGTGCCCCTG 60.229 57.895 0.00 0.00 0.00 4.45
597 705 4.828296 GGATGGTGCCCCTGCTGG 62.828 72.222 1.89 1.89 38.71 4.85
623 731 4.669809 ATCCGTGGGCCGCCAAAA 62.670 61.111 12.58 0.00 34.38 2.44
624 732 3.955543 ATCCGTGGGCCGCCAAAAT 62.956 57.895 12.58 0.00 34.38 1.82
625 733 2.559922 ATCCGTGGGCCGCCAAAATA 62.560 55.000 12.58 0.00 34.38 1.40
627 735 1.671901 CCGTGGGCCGCCAAAATATT 61.672 55.000 12.58 0.00 34.38 1.28
628 736 0.527385 CGTGGGCCGCCAAAATATTG 60.527 55.000 12.58 0.00 36.25 1.90
641 749 5.630896 CAAAATATTGGCGCAGAATTCTG 57.369 39.130 27.82 27.82 38.65 3.02
649 757 2.273449 CAGAATTCTGCCGCCCCT 59.727 61.111 21.96 0.00 37.15 4.79
650 758 2.117156 CAGAATTCTGCCGCCCCTG 61.117 63.158 21.96 0.00 37.15 4.45
651 759 2.272146 GAATTCTGCCGCCCCTGA 59.728 61.111 0.00 0.00 0.00 3.86
653 761 2.543067 GAATTCTGCCGCCCCTGACT 62.543 60.000 0.00 0.00 0.00 3.41
654 762 2.543067 AATTCTGCCGCCCCTGACTC 62.543 60.000 0.00 0.00 0.00 3.36
660 768 4.697756 CGCCCCTGACTCGCCAAA 62.698 66.667 0.00 0.00 0.00 3.28
661 769 2.282180 GCCCCTGACTCGCCAAAA 60.282 61.111 0.00 0.00 0.00 2.44
662 770 1.901464 GCCCCTGACTCGCCAAAAA 60.901 57.895 0.00 0.00 0.00 1.94
663 771 1.866853 GCCCCTGACTCGCCAAAAAG 61.867 60.000 0.00 0.00 0.00 2.27
666 774 1.001378 CCCTGACTCGCCAAAAAGTTG 60.001 52.381 0.00 0.00 34.25 3.16
680 788 5.781223 CAAAAAGTTGGCGTGAAACTAAAC 58.219 37.500 0.92 0.00 36.87 2.01
681 789 4.976224 AAAGTTGGCGTGAAACTAAACT 57.024 36.364 0.92 0.00 36.87 2.66
682 790 6.439675 AAAAGTTGGCGTGAAACTAAACTA 57.560 33.333 0.92 0.00 36.87 2.24
683 791 5.413969 AAGTTGGCGTGAAACTAAACTAC 57.586 39.130 0.92 0.00 36.87 2.73
684 792 3.811497 AGTTGGCGTGAAACTAAACTACC 59.189 43.478 0.00 0.00 36.11 3.18
686 794 1.728425 GGCGTGAAACTAAACTACCGG 59.272 52.381 0.00 0.00 31.75 5.28
687 795 2.407090 GCGTGAAACTAAACTACCGGT 58.593 47.619 13.98 13.98 31.75 5.28
690 798 3.396560 GTGAAACTAAACTACCGGTGCT 58.603 45.455 19.93 0.00 0.00 4.40
691 799 4.559153 GTGAAACTAAACTACCGGTGCTA 58.441 43.478 19.93 0.00 0.00 3.49
693 801 4.281688 TGAAACTAAACTACCGGTGCTACT 59.718 41.667 19.93 0.00 0.00 2.57
694 802 4.879197 AACTAAACTACCGGTGCTACTT 57.121 40.909 19.93 5.93 0.00 2.24
695 803 4.879197 ACTAAACTACCGGTGCTACTTT 57.121 40.909 19.93 9.38 0.00 2.66
697 805 2.467566 AACTACCGGTGCTACTTTGG 57.532 50.000 19.93 0.00 0.00 3.28
698 806 0.611714 ACTACCGGTGCTACTTTGGG 59.388 55.000 19.93 0.00 0.00 4.12
699 807 0.743345 CTACCGGTGCTACTTTGGGC 60.743 60.000 19.93 0.00 0.00 5.36
700 808 1.481901 TACCGGTGCTACTTTGGGCA 61.482 55.000 19.93 0.00 36.01 5.36
704 812 2.035626 TGCTACTTTGGGCAGGGC 59.964 61.111 0.00 0.00 34.22 5.19
705 813 3.134127 GCTACTTTGGGCAGGGCG 61.134 66.667 0.00 0.00 0.00 6.13
706 814 2.668632 CTACTTTGGGCAGGGCGA 59.331 61.111 0.00 0.00 0.00 5.54
715 823 3.918544 GCAGGGCGAGCCAAATTA 58.081 55.556 16.65 0.00 37.98 1.40
716 824 2.419057 GCAGGGCGAGCCAAATTAT 58.581 52.632 16.65 0.00 37.98 1.28
718 826 1.536709 GCAGGGCGAGCCAAATTATTG 60.537 52.381 16.65 3.68 37.98 1.90
731 839 5.356291 CAAATTATTGGCCCTGATCCAAA 57.644 39.130 0.00 0.00 45.63 3.28
732 840 5.118286 CAAATTATTGGCCCTGATCCAAAC 58.882 41.667 0.00 0.00 45.63 2.93
733 841 3.464720 TTATTGGCCCTGATCCAAACA 57.535 42.857 0.00 0.00 45.63 2.83
734 842 2.555732 ATTGGCCCTGATCCAAACAT 57.444 45.000 0.00 0.00 45.63 2.71
737 845 0.740737 GGCCCTGATCCAAACATTCG 59.259 55.000 0.00 0.00 0.00 3.34
739 847 0.740737 CCCTGATCCAAACATTCGCC 59.259 55.000 0.00 0.00 0.00 5.54
741 849 1.462616 CTGATCCAAACATTCGCCCA 58.537 50.000 0.00 0.00 0.00 5.36
742 850 1.133025 CTGATCCAAACATTCGCCCAC 59.867 52.381 0.00 0.00 0.00 4.61
743 851 0.098728 GATCCAAACATTCGCCCACG 59.901 55.000 0.00 0.00 42.01 4.94
745 853 2.126502 CAAACATTCGCCCACGCC 60.127 61.111 0.00 0.00 39.84 5.68
746 854 2.282180 AAACATTCGCCCACGCCT 60.282 55.556 0.00 0.00 39.84 5.52
747 855 2.625823 AAACATTCGCCCACGCCTG 61.626 57.895 0.00 0.00 39.84 4.85
750 858 4.778143 ATTCGCCCACGCCTGGTC 62.778 66.667 0.86 0.00 39.84 4.02
754 862 4.643387 GCCCACGCCTGGTCAACT 62.643 66.667 0.86 0.00 35.46 3.16
756 864 1.375523 CCCACGCCTGGTCAACTAC 60.376 63.158 0.86 0.00 35.46 2.73
781 889 3.810310 TTTTTGGTTGGGCTGTTGTAG 57.190 42.857 0.00 0.00 0.00 2.74
782 890 1.698506 TTTGGTTGGGCTGTTGTAGG 58.301 50.000 0.00 0.00 0.00 3.18
791 899 0.453390 GCTGTTGTAGGCTGCAATCC 59.547 55.000 20.81 9.84 0.00 3.01
792 900 1.825090 CTGTTGTAGGCTGCAATCCA 58.175 50.000 20.81 13.73 0.00 3.41
793 901 2.161855 CTGTTGTAGGCTGCAATCCAA 58.838 47.619 20.81 6.98 0.00 3.53
794 902 2.557924 CTGTTGTAGGCTGCAATCCAAA 59.442 45.455 20.81 4.74 0.00 3.28
796 904 2.284754 TGTAGGCTGCAATCCAAACA 57.715 45.000 1.69 7.75 0.00 2.83
797 905 2.161855 TGTAGGCTGCAATCCAAACAG 58.838 47.619 1.69 0.00 34.48 3.16
983 2446 2.951101 CGTACAGACCCACCACCCC 61.951 68.421 0.00 0.00 0.00 4.95
995 2458 2.060980 CCACCCCCTCTCTTCTCCG 61.061 68.421 0.00 0.00 0.00 4.63
1107 2570 0.319900 GTCTGCAGTTTCAGCCGAGA 60.320 55.000 14.67 0.00 34.19 4.04
1266 2729 1.602605 GGTTGGTGGTTTCCTCCGG 60.603 63.158 0.00 0.00 39.80 5.14
1294 2757 1.434696 GGGCATTGTGCGATTCCAG 59.565 57.895 0.00 0.00 46.21 3.86
1314 2789 9.753674 ATTCCAGTCACCTTCTTATTTATTGAA 57.246 29.630 0.00 0.00 0.00 2.69
1343 2818 2.693762 TAGAACCCGACGACCGCTG 61.694 63.158 0.00 0.00 36.84 5.18
1383 2858 1.080298 ACGTCGCGTTTTCCTAGGG 60.080 57.895 9.46 0.00 36.35 3.53
1482 2963 4.611943 GCTTATGCTCAGATTCGACTGTA 58.388 43.478 3.27 0.00 38.79 2.74
1531 3015 8.367911 TGATTCGATCAAATATACTTAGCCAGT 58.632 33.333 0.00 0.00 36.51 4.00
1698 3183 7.227049 CCTGAAGGTGAAGGCTTAAAATAAA 57.773 36.000 0.00 0.00 0.00 1.40
1705 3190 9.710900 AGGTGAAGGCTTAAAATAAATTTTCAG 57.289 29.630 0.00 4.80 40.24 3.02
1760 3245 6.918626 ACGTAGGAGTACTTTTTAGAAGGAC 58.081 40.000 0.00 0.00 0.00 3.85
1783 3268 3.332034 GCTTAAGACGAGCCCAACTTTA 58.668 45.455 6.67 0.00 34.06 1.85
1802 3287 8.638565 CAACTTTAAATTAACGAAGCCATCAAG 58.361 33.333 0.00 0.00 0.00 3.02
1805 3290 4.782019 AATTAACGAAGCCATCAAGCAA 57.218 36.364 0.00 0.00 34.23 3.91
1808 3293 0.250901 ACGAAGCCATCAAGCAACCT 60.251 50.000 0.00 0.00 34.23 3.50
1853 3453 1.209504 TCGGCTGAAAGATACAAGGGG 59.790 52.381 0.00 0.00 34.07 4.79
1938 3542 2.496070 ACTGCTAGTAATGTCGAAGCCA 59.504 45.455 0.86 0.00 32.14 4.75
1999 3622 1.936547 GCTTCCAAGGATCAGCTTACG 59.063 52.381 5.70 0.00 0.00 3.18
2047 3670 1.219124 CATGGGACTGGAGACACCG 59.781 63.158 0.00 0.00 42.61 4.94
2057 3680 0.391263 GGAGACACCGAACCCATCAC 60.391 60.000 0.00 0.00 0.00 3.06
2061 3684 1.377202 CACCGAACCCATCACCTGG 60.377 63.158 0.00 0.00 45.51 4.45
2065 3688 0.251916 CGAACCCATCACCTGGCTTA 59.748 55.000 0.00 0.00 44.46 3.09
2073 3696 2.447408 TCACCTGGCTTATCTACCGA 57.553 50.000 0.00 0.00 0.00 4.69
2137 3767 2.579787 CGTAGAGGCGCTCAACCG 60.580 66.667 7.64 0.65 32.06 4.44
2161 3791 2.514824 GGAACAGATGCCGGCCTC 60.515 66.667 26.77 24.52 0.00 4.70
2165 3795 2.892425 CAGATGCCGGCCTCGAAC 60.892 66.667 26.77 3.39 39.00 3.95
2185 3815 1.676746 CTAGAGCAGCCATTGTGCAT 58.323 50.000 0.00 0.00 43.82 3.96
2186 3816 1.333931 CTAGAGCAGCCATTGTGCATG 59.666 52.381 0.00 0.00 43.82 4.06
2196 3826 1.478916 CATTGTGCATGGCCATCTTCA 59.521 47.619 17.61 11.49 0.00 3.02
2197 3827 0.889994 TTGTGCATGGCCATCTTCAC 59.110 50.000 24.68 24.68 0.00 3.18
2198 3828 0.251253 TGTGCATGGCCATCTTCACA 60.251 50.000 27.86 27.86 32.78 3.58
2199 3829 0.171903 GTGCATGGCCATCTTCACAC 59.828 55.000 25.71 19.90 0.00 3.82
2204 3843 1.971167 GGCCATCTTCACACGGCAA 60.971 57.895 0.00 0.00 46.75 4.52
2213 3852 3.572539 ACACGGCAAGCGTGTGTG 61.573 61.111 17.05 19.53 46.93 3.82
2218 3857 2.101965 GCAAGCGTGTGTGCACAA 59.898 55.556 23.59 9.40 45.50 3.33
2220 3859 1.741947 GCAAGCGTGTGTGCACAAAC 61.742 55.000 27.32 27.32 45.50 2.93
2239 3878 2.669229 CACACACCAGCCGCATCA 60.669 61.111 0.00 0.00 0.00 3.07
2241 3880 2.359107 CACACCAGCCGCATCACT 60.359 61.111 0.00 0.00 0.00 3.41
2244 3883 4.025858 ACCAGCCGCATCACTGCT 62.026 61.111 0.00 0.00 46.65 4.24
2249 3888 4.790962 CCGCATCACTGCTGCCCT 62.791 66.667 0.00 0.00 46.65 5.19
2253 3892 1.001764 CATCACTGCTGCCCTTGGA 60.002 57.895 0.00 0.00 0.00 3.53
2259 3898 4.329545 GCTGCCCTTGGACGACCA 62.330 66.667 1.37 1.37 45.34 4.02
2274 3913 4.434520 GACGACCAAAAACATTGGGAAAA 58.565 39.130 11.58 0.00 43.71 2.29
2290 4023 4.202727 TGGGAAAACCACTGGGAATAATCA 60.203 41.667 0.00 0.00 46.80 2.57
2292 4025 5.016831 GGAAAACCACTGGGAATAATCACT 58.983 41.667 0.00 0.00 38.05 3.41
2348 4081 7.011295 GCAGCTAGGAATATCTGATTATTGAGC 59.989 40.741 0.00 0.00 0.00 4.26
2349 4082 8.039538 CAGCTAGGAATATCTGATTATTGAGCA 58.960 37.037 0.00 0.00 0.00 4.26
2350 4083 8.040132 AGCTAGGAATATCTGATTATTGAGCAC 58.960 37.037 0.00 0.00 0.00 4.40
2351 4084 7.821359 GCTAGGAATATCTGATTATTGAGCACA 59.179 37.037 0.00 0.00 0.00 4.57
2352 4085 9.368674 CTAGGAATATCTGATTATTGAGCACAG 57.631 37.037 0.00 0.00 0.00 3.66
2353 4086 7.971201 AGGAATATCTGATTATTGAGCACAGA 58.029 34.615 0.00 0.00 40.88 3.41
2354 4087 7.877097 AGGAATATCTGATTATTGAGCACAGAC 59.123 37.037 0.00 0.00 39.76 3.51
2357 4090 3.519107 TCTGATTATTGAGCACAGACCCA 59.481 43.478 0.00 0.00 33.57 4.51
2358 4091 3.609853 TGATTATTGAGCACAGACCCAC 58.390 45.455 0.00 0.00 0.00 4.61
2362 4097 1.399744 TTGAGCACAGACCCACGACT 61.400 55.000 0.00 0.00 0.00 4.18
2385 4120 0.449388 GAACAAAGCTCAGGCATCCG 59.551 55.000 0.00 0.00 41.70 4.18
2482 4217 1.192146 GGGACACAGCCACACTCCTA 61.192 60.000 0.00 0.00 0.00 2.94
2503 4238 1.450211 CACCGAAGAACACCACCCT 59.550 57.895 0.00 0.00 0.00 4.34
2552 4287 4.646040 CCTATGAACCTCCATTGATTTGCA 59.354 41.667 0.00 0.00 0.00 4.08
2559 4294 0.108520 CCATTGATTTGCAGCCGCTT 60.109 50.000 0.00 0.00 39.64 4.68
2575 4310 1.557443 GCTTGGACTCGACAACCACG 61.557 60.000 0.00 0.00 33.20 4.94
2578 4313 1.364901 GGACTCGACAACCACGGAA 59.635 57.895 0.00 0.00 0.00 4.30
2579 4314 0.942884 GGACTCGACAACCACGGAAC 60.943 60.000 0.00 0.00 0.00 3.62
2580 4315 0.249155 GACTCGACAACCACGGAACA 60.249 55.000 0.00 0.00 0.00 3.18
2624 4359 3.450817 CACCCAAAGAACCAAAACTTCCT 59.549 43.478 0.00 0.00 0.00 3.36
2625 4360 4.081142 CACCCAAAGAACCAAAACTTCCTT 60.081 41.667 0.00 0.00 0.00 3.36
2626 4361 4.081142 ACCCAAAGAACCAAAACTTCCTTG 60.081 41.667 0.00 0.00 0.00 3.61
2701 4439 0.882927 GGCGGGTTTTTGGGCTTTTC 60.883 55.000 0.00 0.00 0.00 2.29
2760 4508 2.586792 GTTCCTCCAGCGGCTCAT 59.413 61.111 0.00 0.00 0.00 2.90
2793 4541 2.895372 GCCATGGCCGGAGTAACG 60.895 66.667 27.24 0.00 34.56 3.18
2823 4571 0.620700 TTCCCCCTAGTCTCAAGCCC 60.621 60.000 0.00 0.00 0.00 5.19
2833 4581 0.465460 TCTCAAGCCCACACAACCAC 60.465 55.000 0.00 0.00 0.00 4.16
2839 4587 2.277072 CCACACAACCACCACCCA 59.723 61.111 0.00 0.00 0.00 4.51
2841 4589 1.827789 CACACAACCACCACCCAGG 60.828 63.158 0.00 0.00 45.67 4.45
2874 4622 2.960129 CGACCGATGGCCGCTAAC 60.960 66.667 0.00 0.00 36.84 2.34
2912 4660 1.408969 GAGTGAGCTAAGGGGGAGAG 58.591 60.000 0.00 0.00 0.00 3.20
2915 4663 0.032017 TGAGCTAAGGGGGAGAGGAC 60.032 60.000 0.00 0.00 0.00 3.85
2916 4664 0.761323 GAGCTAAGGGGGAGAGGACC 60.761 65.000 0.00 0.00 0.00 4.46
2917 4665 1.232461 AGCTAAGGGGGAGAGGACCT 61.232 60.000 0.00 0.00 35.78 3.85
2918 4666 0.326713 GCTAAGGGGGAGAGGACCTT 60.327 60.000 0.00 0.00 45.90 3.50
2919 4667 1.501582 CTAAGGGGGAGAGGACCTTG 58.498 60.000 0.00 0.00 43.98 3.61
2920 4668 1.008449 CTAAGGGGGAGAGGACCTTGA 59.992 57.143 0.00 0.00 43.98 3.02
2921 4669 0.547954 AAGGGGGAGAGGACCTTGAC 60.548 60.000 0.00 0.00 42.71 3.18
2922 4670 1.229529 GGGGGAGAGGACCTTGACA 60.230 63.158 0.00 0.00 0.00 3.58
2923 4671 0.621862 GGGGGAGAGGACCTTGACAT 60.622 60.000 0.00 0.00 0.00 3.06
2924 4672 1.290134 GGGGAGAGGACCTTGACATT 58.710 55.000 0.00 0.00 0.00 2.71
2925 4673 1.210722 GGGGAGAGGACCTTGACATTC 59.789 57.143 0.00 0.00 0.00 2.67
2926 4674 1.134670 GGGAGAGGACCTTGACATTCG 60.135 57.143 0.00 0.00 0.00 3.34
2927 4675 1.134670 GGAGAGGACCTTGACATTCGG 60.135 57.143 0.00 0.00 0.00 4.30
2928 4676 0.905357 AGAGGACCTTGACATTCGGG 59.095 55.000 0.00 0.00 0.00 5.14
2929 4677 0.613777 GAGGACCTTGACATTCGGGT 59.386 55.000 0.00 0.00 34.45 5.28
2930 4678 0.613777 AGGACCTTGACATTCGGGTC 59.386 55.000 0.00 0.00 45.18 4.46
2931 4679 0.613777 GGACCTTGACATTCGGGTCT 59.386 55.000 10.21 0.00 45.23 3.85
2932 4680 1.676014 GGACCTTGACATTCGGGTCTG 60.676 57.143 10.21 0.00 45.23 3.51
2933 4681 0.324943 ACCTTGACATTCGGGTCTGG 59.675 55.000 0.00 0.00 38.61 3.86
2934 4682 0.613260 CCTTGACATTCGGGTCTGGA 59.387 55.000 0.00 0.00 38.61 3.86
2935 4683 1.406069 CCTTGACATTCGGGTCTGGAG 60.406 57.143 0.00 0.00 38.61 3.86
2936 4684 1.550524 CTTGACATTCGGGTCTGGAGA 59.449 52.381 0.00 0.00 38.61 3.71
2937 4685 1.186200 TGACATTCGGGTCTGGAGAG 58.814 55.000 0.00 0.00 38.61 3.20
2938 4686 1.272480 TGACATTCGGGTCTGGAGAGA 60.272 52.381 0.00 0.00 38.61 3.10
2939 4687 2.035632 GACATTCGGGTCTGGAGAGAT 58.964 52.381 0.00 0.00 34.92 2.75
2940 4688 3.223435 GACATTCGGGTCTGGAGAGATA 58.777 50.000 0.00 0.00 34.92 1.98
2941 4689 3.226777 ACATTCGGGTCTGGAGAGATAG 58.773 50.000 0.00 0.00 0.00 2.08
2942 4690 3.117474 ACATTCGGGTCTGGAGAGATAGA 60.117 47.826 0.00 0.00 0.00 1.98
2943 4691 2.940994 TCGGGTCTGGAGAGATAGAG 57.059 55.000 0.00 0.00 0.00 2.43
2944 4692 2.409570 TCGGGTCTGGAGAGATAGAGA 58.590 52.381 0.00 0.00 0.00 3.10
2945 4693 2.370519 TCGGGTCTGGAGAGATAGAGAG 59.629 54.545 0.00 0.00 0.00 3.20
2946 4694 2.370519 CGGGTCTGGAGAGATAGAGAGA 59.629 54.545 0.00 0.00 0.00 3.10
2947 4695 3.181449 CGGGTCTGGAGAGATAGAGAGAA 60.181 52.174 0.00 0.00 0.00 2.87
2948 4696 4.687494 CGGGTCTGGAGAGATAGAGAGAAA 60.687 50.000 0.00 0.00 0.00 2.52
2949 4697 5.205056 GGGTCTGGAGAGATAGAGAGAAAA 58.795 45.833 0.00 0.00 0.00 2.29
2950 4698 5.838521 GGGTCTGGAGAGATAGAGAGAAAAT 59.161 44.000 0.00 0.00 0.00 1.82
2951 4699 6.015434 GGGTCTGGAGAGATAGAGAGAAAATC 60.015 46.154 0.00 0.00 0.00 2.17
2952 4700 6.015434 GGTCTGGAGAGATAGAGAGAAAATCC 60.015 46.154 0.00 0.00 0.00 3.01
2953 4701 5.767665 TCTGGAGAGATAGAGAGAAAATCCG 59.232 44.000 0.00 0.00 0.00 4.18
2954 4702 5.450453 TGGAGAGATAGAGAGAAAATCCGT 58.550 41.667 0.00 0.00 0.00 4.69
2955 4703 5.300539 TGGAGAGATAGAGAGAAAATCCGTG 59.699 44.000 0.00 0.00 0.00 4.94
2956 4704 5.195001 AGAGATAGAGAGAAAATCCGTGC 57.805 43.478 0.00 0.00 0.00 5.34
2957 4705 4.038642 AGAGATAGAGAGAAAATCCGTGCC 59.961 45.833 0.00 0.00 0.00 5.01
2958 4706 2.579207 TAGAGAGAAAATCCGTGCCG 57.421 50.000 0.00 0.00 0.00 5.69
2959 4707 0.741221 AGAGAGAAAATCCGTGCCGC 60.741 55.000 0.00 0.00 0.00 6.53
2960 4708 2.025359 GAGAGAAAATCCGTGCCGCG 62.025 60.000 0.00 0.00 40.95 6.46
2961 4709 2.047655 AGAAAATCCGTGCCGCGA 60.048 55.556 8.23 0.00 44.77 5.87
2962 4710 2.097728 GAAAATCCGTGCCGCGAC 59.902 61.111 8.23 0.00 44.77 5.19
2963 4711 3.376914 GAAAATCCGTGCCGCGACC 62.377 63.158 8.23 0.00 44.77 4.79
2964 4712 4.690719 AAATCCGTGCCGCGACCA 62.691 61.111 8.23 0.33 44.77 4.02
2968 4716 4.508128 CCGTGCCGCGACCACTAT 62.508 66.667 21.58 0.00 44.77 2.12
2969 4717 2.954868 CGTGCCGCGACCACTATC 60.955 66.667 21.58 2.81 44.77 2.08
2970 4718 2.494918 GTGCCGCGACCACTATCT 59.505 61.111 8.23 0.00 0.00 1.98
2971 4719 1.878522 GTGCCGCGACCACTATCTG 60.879 63.158 8.23 0.00 0.00 2.90
2972 4720 2.348104 TGCCGCGACCACTATCTGT 61.348 57.895 8.23 0.00 0.00 3.41
2973 4721 1.589196 GCCGCGACCACTATCTGTC 60.589 63.158 8.23 0.00 0.00 3.51
2980 4728 2.645802 GACCACTATCTGTCGACTCCT 58.354 52.381 17.92 3.41 0.00 3.69
2981 4729 3.018149 GACCACTATCTGTCGACTCCTT 58.982 50.000 17.92 1.76 0.00 3.36
2982 4730 2.755655 ACCACTATCTGTCGACTCCTTG 59.244 50.000 17.92 6.97 0.00 3.61
2983 4731 2.480416 CCACTATCTGTCGACTCCTTGC 60.480 54.545 17.92 0.00 0.00 4.01
2984 4732 2.425312 CACTATCTGTCGACTCCTTGCT 59.575 50.000 17.92 0.00 0.00 3.91
2985 4733 2.425312 ACTATCTGTCGACTCCTTGCTG 59.575 50.000 17.92 2.41 0.00 4.41
2986 4734 0.108424 ATCTGTCGACTCCTTGCTGC 60.108 55.000 17.92 0.00 0.00 5.25
2987 4735 1.739562 CTGTCGACTCCTTGCTGCC 60.740 63.158 17.92 0.00 0.00 4.85
2988 4736 2.435059 GTCGACTCCTTGCTGCCC 60.435 66.667 8.70 0.00 0.00 5.36
2989 4737 2.922503 TCGACTCCTTGCTGCCCA 60.923 61.111 0.00 0.00 0.00 5.36
2990 4738 2.270205 CGACTCCTTGCTGCCCAT 59.730 61.111 0.00 0.00 0.00 4.00
2991 4739 2.110967 CGACTCCTTGCTGCCCATG 61.111 63.158 0.00 0.00 0.00 3.66
2992 4740 2.362120 ACTCCTTGCTGCCCATGC 60.362 61.111 0.00 0.00 38.26 4.06
2994 4742 2.677524 TCCTTGCTGCCCATGCAC 60.678 61.111 0.00 0.00 44.23 4.57
2995 4743 2.992689 CCTTGCTGCCCATGCACA 60.993 61.111 0.00 0.00 44.23 4.57
2996 4744 2.575893 CCTTGCTGCCCATGCACAA 61.576 57.895 0.00 0.00 44.23 3.33
2997 4745 1.080093 CTTGCTGCCCATGCACAAG 60.080 57.895 0.00 12.14 44.23 3.16
2998 4746 2.501223 CTTGCTGCCCATGCACAAGG 62.501 60.000 15.65 0.00 44.23 3.61
2999 4747 2.677524 GCTGCCCATGCACAAGGA 60.678 61.111 2.73 0.00 44.23 3.36
3000 4748 2.277591 GCTGCCCATGCACAAGGAA 61.278 57.895 2.73 0.00 44.23 3.36
3001 4749 1.888018 CTGCCCATGCACAAGGAAG 59.112 57.895 2.73 0.00 44.23 3.46
3002 4750 0.896940 CTGCCCATGCACAAGGAAGT 60.897 55.000 2.73 0.00 44.23 3.01
3003 4751 0.469705 TGCCCATGCACAAGGAAGTT 60.470 50.000 2.73 0.00 44.23 2.66
3004 4752 0.037975 GCCCATGCACAAGGAAGTTG 60.038 55.000 2.73 0.00 42.48 3.16
3005 4753 0.604578 CCCATGCACAAGGAAGTTGG 59.395 55.000 3.37 0.00 40.90 3.77
3006 4754 0.037975 CCATGCACAAGGAAGTTGGC 60.038 55.000 0.00 0.00 40.90 4.52
3007 4755 0.963962 CATGCACAAGGAAGTTGGCT 59.036 50.000 0.00 0.00 40.90 4.75
3008 4756 1.068055 CATGCACAAGGAAGTTGGCTC 60.068 52.381 0.00 0.00 40.90 4.70
3009 4757 1.165907 TGCACAAGGAAGTTGGCTCG 61.166 55.000 0.00 0.00 40.90 5.03
3010 4758 1.576421 CACAAGGAAGTTGGCTCGC 59.424 57.895 0.00 0.00 40.90 5.03
3011 4759 1.148273 ACAAGGAAGTTGGCTCGCA 59.852 52.632 0.00 0.00 40.90 5.10
3012 4760 1.166531 ACAAGGAAGTTGGCTCGCAC 61.167 55.000 0.00 0.00 40.90 5.34
3013 4761 1.600916 AAGGAAGTTGGCTCGCACC 60.601 57.895 0.00 0.00 0.00 5.01
3014 4762 2.032681 GGAAGTTGGCTCGCACCT 59.967 61.111 0.00 0.00 0.00 4.00
3015 4763 2.035442 GGAAGTTGGCTCGCACCTC 61.035 63.158 0.00 0.00 0.00 3.85
3016 4764 2.357517 AAGTTGGCTCGCACCTCG 60.358 61.111 0.00 0.00 40.15 4.63
3017 4765 3.883744 AAGTTGGCTCGCACCTCGG 62.884 63.158 0.00 0.00 39.05 4.63
3040 4788 3.818787 CCTGCACGGAGGCAATGC 61.819 66.667 0.00 0.00 44.40 3.56
3052 4800 3.957535 CAATGCCGCCTCGCCATC 61.958 66.667 0.00 0.00 0.00 3.51
3053 4801 4.181010 AATGCCGCCTCGCCATCT 62.181 61.111 0.00 0.00 0.00 2.90
3054 4802 2.807107 AATGCCGCCTCGCCATCTA 61.807 57.895 0.00 0.00 0.00 1.98
3055 4803 2.324014 AATGCCGCCTCGCCATCTAA 62.324 55.000 0.00 0.00 0.00 2.10
3056 4804 2.663188 GCCGCCTCGCCATCTAAG 60.663 66.667 0.00 0.00 0.00 2.18
3057 4805 2.029666 CCGCCTCGCCATCTAAGG 59.970 66.667 0.00 0.00 0.00 2.69
3066 4814 2.537600 CCATCTAAGGCTGCCTCCT 58.462 57.895 23.61 10.16 38.31 3.69
3067 4815 0.396060 CCATCTAAGGCTGCCTCCTC 59.604 60.000 23.61 0.00 34.82 3.71
3068 4816 0.033228 CATCTAAGGCTGCCTCCTCG 59.967 60.000 23.61 10.59 34.82 4.63
3069 4817 1.118356 ATCTAAGGCTGCCTCCTCGG 61.118 60.000 23.61 10.38 34.82 4.63
3078 4826 2.581354 CCTCCTCGGCAACCAGAG 59.419 66.667 0.00 0.00 0.00 3.35
3079 4827 2.286523 CCTCCTCGGCAACCAGAGT 61.287 63.158 0.00 0.00 32.88 3.24
3080 4828 1.216710 CTCCTCGGCAACCAGAGTC 59.783 63.158 0.00 0.00 32.88 3.36
3106 5023 2.029365 GCGAAGGAATGAAGTAACGAGC 59.971 50.000 0.00 0.00 0.00 5.03
3117 5034 3.620300 TAACGAGCACCTCACCGCG 62.620 63.158 0.00 0.00 0.00 6.46
3132 5049 2.103538 GCGACCTTCATCGGCGTA 59.896 61.111 6.85 0.00 42.49 4.42
3190 5107 2.766229 GGAGGGAGAGGGTGGAGC 60.766 72.222 0.00 0.00 0.00 4.70
3192 5109 3.663815 GAGGGAGAGGGTGGAGCGA 62.664 68.421 0.00 0.00 0.00 4.93
3202 5133 0.611714 GGTGGAGCGAGAAACCCTAA 59.388 55.000 0.00 0.00 0.00 2.69
3215 5146 2.750141 ACCCTAATCGCCTCTGAGTA 57.250 50.000 3.66 0.00 0.00 2.59
3223 5154 0.970937 CGCCTCTGAGTAACCCTGGA 60.971 60.000 3.66 0.00 0.00 3.86
3233 5164 0.406750 TAACCCTGGAGAGGACGACA 59.593 55.000 0.00 0.00 42.93 4.35
3241 5172 3.371063 GAGGACGACACGAGGGCA 61.371 66.667 0.00 0.00 0.00 5.36
3338 5275 9.685828 TTTTTACTAAAGCTGCGTCAATTAATT 57.314 25.926 0.00 0.00 0.00 1.40
3341 5278 7.566858 ACTAAAGCTGCGTCAATTAATTTTG 57.433 32.000 0.00 0.00 0.00 2.44
3342 5279 7.367285 ACTAAAGCTGCGTCAATTAATTTTGA 58.633 30.769 0.00 0.00 33.32 2.69
3344 5281 6.875926 AAGCTGCGTCAATTAATTTTGATC 57.124 33.333 0.00 0.00 37.88 2.92
3345 5282 5.030295 AGCTGCGTCAATTAATTTTGATCG 58.970 37.500 0.00 4.24 37.88 3.69
3346 5283 4.204978 GCTGCGTCAATTAATTTTGATCGG 59.795 41.667 0.00 0.00 37.88 4.18
3347 5284 5.553290 TGCGTCAATTAATTTTGATCGGA 57.447 34.783 0.00 1.87 37.88 4.55
3348 5285 5.568482 TGCGTCAATTAATTTTGATCGGAG 58.432 37.500 0.00 0.00 37.88 4.63
3349 5286 4.970003 GCGTCAATTAATTTTGATCGGAGG 59.030 41.667 0.00 0.00 37.88 4.30
3350 5287 5.220777 GCGTCAATTAATTTTGATCGGAGGA 60.221 40.000 0.00 0.00 37.88 3.71
3391 5533 7.905493 GCTCTGTTGTATTTGTTACTATCTTGC 59.095 37.037 0.00 0.00 0.00 4.01
3393 5535 8.935844 TCTGTTGTATTTGTTACTATCTTGCAG 58.064 33.333 0.00 0.00 0.00 4.41
3394 5536 8.840833 TGTTGTATTTGTTACTATCTTGCAGA 57.159 30.769 0.00 0.00 0.00 4.26
3408 5550 8.275040 ACTATCTTGCAGACCAAAATATAAGGT 58.725 33.333 0.00 0.00 38.63 3.50
3713 5901 2.771943 AGAGAAGCGGGAAATACCATCA 59.228 45.455 0.00 0.00 41.20 3.07
3720 5908 4.638865 AGCGGGAAATACCATCAGTTTTAC 59.361 41.667 0.00 0.00 41.20 2.01
3740 5928 3.888934 ACAAATCATCGTCTTGTTGCAC 58.111 40.909 0.00 0.00 28.99 4.57
3782 5971 2.406596 ATGGCATGGCAATTTTCACC 57.593 45.000 27.04 0.00 0.00 4.02
3854 6043 9.850628 ACATTTCATCTAAAAATCACTGTCATG 57.149 29.630 0.00 0.00 0.00 3.07
3873 6062 3.386768 TGTCTGTTAGAGAAGTGCACC 57.613 47.619 14.63 0.00 30.26 5.01
3995 6184 4.316025 TCCTTTCTCCATGGTTTTAGGG 57.684 45.455 12.58 8.62 0.00 3.53
4122 6312 4.903045 TTTCCTAAGGAACCCACTACAG 57.097 45.455 0.00 0.00 41.87 2.74
4139 6329 7.013846 CCCACTACAGTACATTTCAAAGGAAAA 59.986 37.037 0.00 0.00 45.52 2.29
4166 6356 4.579869 ACATCCACTCCAAACTCATGTAC 58.420 43.478 0.00 0.00 0.00 2.90
4172 6364 7.047891 TCCACTCCAAACTCATGTACATAATC 58.952 38.462 8.32 0.00 0.00 1.75
4177 6369 9.778993 CTCCAAACTCATGTACATAATCTTTTG 57.221 33.333 8.32 12.57 0.00 2.44
4178 6370 9.295825 TCCAAACTCATGTACATAATCTTTTGT 57.704 29.630 8.32 0.00 0.00 2.83
4219 6411 0.028902 GACACTTTGGTGCGGACAAC 59.971 55.000 9.96 0.00 46.57 3.32
4221 6413 0.029300 CACTTTGGTGCGGACAACAG 59.971 55.000 9.96 2.10 46.30 3.16
4267 6459 2.161609 CACTGCAATCCTACGTTTTCCC 59.838 50.000 0.00 0.00 0.00 3.97
4271 6463 4.653868 TGCAATCCTACGTTTTCCCTTTA 58.346 39.130 0.00 0.00 0.00 1.85
4273 6465 6.416415 TGCAATCCTACGTTTTCCCTTTATA 58.584 36.000 0.00 0.00 0.00 0.98
4274 6466 7.057894 TGCAATCCTACGTTTTCCCTTTATAT 58.942 34.615 0.00 0.00 0.00 0.86
4275 6467 8.212312 TGCAATCCTACGTTTTCCCTTTATATA 58.788 33.333 0.00 0.00 0.00 0.86
4276 6468 9.227777 GCAATCCTACGTTTTCCCTTTATATAT 57.772 33.333 0.00 0.00 0.00 0.86
4382 6576 4.082679 TCGAGTAGGAAAAGTTCTCTGAGC 60.083 45.833 0.00 0.00 0.00 4.26
4570 6764 3.914312 TCTTAAAGGCAAGACTCTGTCG 58.086 45.455 0.00 0.00 37.67 4.35
4576 6770 3.303135 AAGACTCTGTCGGCGGCA 61.303 61.111 15.63 15.63 37.67 5.69
4788 6984 4.388485 TGATCATGGCTACATTGCGTATT 58.612 39.130 0.00 0.00 34.35 1.89
4807 7003 8.640651 TGCGTATTATAGACAGGGTGTAAAATA 58.359 33.333 0.00 0.00 0.00 1.40
4856 7052 2.162681 GCAGTTGCTCCCAAATACTGT 58.837 47.619 0.00 0.00 38.21 3.55
4857 7053 2.162408 GCAGTTGCTCCCAAATACTGTC 59.838 50.000 0.00 0.00 38.21 3.51
4858 7054 3.411446 CAGTTGCTCCCAAATACTGTCA 58.589 45.455 0.00 0.00 31.68 3.58
4881 7077 8.352942 GTCAATTTTCAGATCTACCTTTGTGTT 58.647 33.333 0.00 0.00 0.00 3.32
5019 7215 2.135933 CAGTCTTCAAGAACACCGTCC 58.864 52.381 0.00 0.00 0.00 4.79
5039 7235 0.245539 TGTCGGGATCAACCTTCGAC 59.754 55.000 7.15 7.15 46.13 4.20
5042 7238 0.525668 CGGGATCAACCTTCGACGAG 60.526 60.000 0.00 0.00 38.98 4.18
5081 7277 3.692593 TCGATTTCGAGGACACACTCATA 59.307 43.478 0.00 0.00 44.22 2.15
5132 7328 2.479566 ACACCAGCATCAACGAAGAT 57.520 45.000 0.00 0.00 0.00 2.40
5195 7391 1.407618 ACTTATGGCAGCATCGACGTA 59.592 47.619 0.00 0.00 0.00 3.57
5199 7395 0.108377 TGGCAGCATCGACGTACATT 60.108 50.000 0.00 0.00 0.00 2.71
5251 7447 1.571955 TAGAGCACCAGCAGGATGAA 58.428 50.000 0.35 0.00 45.49 2.57
5254 7450 2.097825 GAGCACCAGCAGGATGAAAAT 58.902 47.619 0.35 0.00 45.49 1.82
5255 7451 3.054139 AGAGCACCAGCAGGATGAAAATA 60.054 43.478 0.35 0.00 45.49 1.40
5265 7822 5.643777 AGCAGGATGAAAATATGTATACCGC 59.356 40.000 0.00 0.00 39.69 5.68
5431 7988 5.245751 TGCTTTATTCCAAATCCACACATGT 59.754 36.000 0.00 0.00 0.00 3.21
5432 7989 6.435591 TGCTTTATTCCAAATCCACACATGTA 59.564 34.615 0.00 0.00 0.00 2.29
5495 8052 4.985413 ACAACATCAACATTATTCGCCTG 58.015 39.130 0.00 0.00 0.00 4.85
5676 8233 6.366877 CGAGGTCGGTCTTTAATTGTCTTTAA 59.633 38.462 0.00 0.00 35.37 1.52
5762 8328 3.625897 CAGGTCTCCACACCGCCA 61.626 66.667 0.00 0.00 41.90 5.69
5783 8349 1.191489 TCATCCAGAGGAACCACGCA 61.191 55.000 0.00 0.00 34.34 5.24
5945 8511 0.440758 CGACCGCACGCTTGAAATAA 59.559 50.000 0.00 0.00 0.00 1.40
6014 8604 0.447801 CGTAACAGGTGCATCTTGGC 59.552 55.000 0.00 0.00 0.00 4.52
6028 8618 0.031585 CTTGGCATGCATGGGAATCG 59.968 55.000 27.34 0.91 0.00 3.34
6040 8630 3.981071 TGGGAATCGATGTTCAAGACT 57.019 42.857 0.00 0.00 0.00 3.24
6052 8642 1.037493 TCAAGACTATGGCGGCGTAT 58.963 50.000 11.75 6.38 0.00 3.06
6053 8643 1.411246 TCAAGACTATGGCGGCGTATT 59.589 47.619 11.75 6.03 0.00 1.89
6316 8906 0.393132 TCGTCAGATCGTCTGCCTCT 60.393 55.000 9.34 0.00 43.95 3.69
6322 8912 2.284798 GATCGTCTGCCTCTTCCGCA 62.285 60.000 0.00 0.00 34.41 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 0.537188 ATTCTCGGCACCTTCGACAT 59.463 50.000 0.00 0.00 32.86 3.06
141 142 2.106938 CTCATTAGCCTCGCCGCA 59.893 61.111 0.00 0.00 0.00 5.69
154 155 0.464735 CTCGTCTCGTCCCCTCTCAT 60.465 60.000 0.00 0.00 0.00 2.90
164 166 4.104417 GCCGCTCACTCGTCTCGT 62.104 66.667 0.00 0.00 0.00 4.18
176 178 2.356313 CACACTCTGTTCGCCGCT 60.356 61.111 0.00 0.00 0.00 5.52
201 203 1.315690 GTTATTAAGAAGGCGCCCCC 58.684 55.000 26.15 15.80 0.00 5.40
202 204 0.942252 CGTTATTAAGAAGGCGCCCC 59.058 55.000 26.15 16.22 0.00 5.80
203 205 1.865340 CTCGTTATTAAGAAGGCGCCC 59.135 52.381 26.15 9.10 0.00 6.13
204 206 1.260825 GCTCGTTATTAAGAAGGCGCC 59.739 52.381 21.89 21.89 0.00 6.53
247 250 2.812178 GGAAAGGTTCGCGCGCTA 60.812 61.111 30.48 17.01 0.00 4.26
313 318 3.396570 CGGGAAAGGGTAGCGGGT 61.397 66.667 0.00 0.00 0.00 5.28
359 366 0.969917 TTTATGCCAGCGCCCATGTT 60.970 50.000 2.29 0.00 0.00 2.71
376 383 0.953471 TGACCAAGCGCGCATAGTTT 60.953 50.000 35.10 15.93 0.00 2.66
378 385 1.153369 ATGACCAAGCGCGCATAGT 60.153 52.632 35.10 25.72 0.00 2.12
389 397 2.023673 GCCGATCCATTTCATGACCAA 58.976 47.619 0.00 0.00 0.00 3.67
436 444 1.406341 CGGACGCCCATCCTCTTTTAA 60.406 52.381 0.00 0.00 36.52 1.52
463 472 0.748729 TTTGTTCGTTTGGGTCGGCT 60.749 50.000 0.00 0.00 0.00 5.52
487 496 3.932289 CGGACGACGCTTTTGTCT 58.068 55.556 0.00 0.00 38.57 3.41
565 601 2.714250 ACCATCCAAACACACCCTAAGA 59.286 45.455 0.00 0.00 0.00 2.10
570 606 1.665442 GCACCATCCAAACACACCC 59.335 57.895 0.00 0.00 0.00 4.61
571 607 1.665442 GGCACCATCCAAACACACC 59.335 57.895 0.00 0.00 0.00 4.16
573 609 2.017668 AGGGGCACCATCCAAACACA 62.018 55.000 8.31 0.00 40.34 3.72
575 611 1.228831 CAGGGGCACCATCCAAACA 60.229 57.895 8.31 0.00 40.34 2.83
576 612 2.649129 GCAGGGGCACCATCCAAAC 61.649 63.158 8.31 0.00 40.34 2.93
577 613 2.283821 GCAGGGGCACCATCCAAA 60.284 61.111 8.31 0.00 40.34 3.28
579 615 4.051167 CAGCAGGGGCACCATCCA 62.051 66.667 8.31 0.00 40.34 3.41
580 616 4.828296 CCAGCAGGGGCACCATCC 62.828 72.222 8.31 0.00 40.34 3.51
605 713 4.669809 TTTGGCGGCCCACGGATT 62.670 61.111 17.97 0.00 41.97 3.01
606 714 2.559922 TATTTTGGCGGCCCACGGAT 62.560 55.000 17.97 6.16 41.97 4.18
607 715 2.559922 ATATTTTGGCGGCCCACGGA 62.560 55.000 17.97 0.00 41.97 4.69
608 716 1.671901 AATATTTTGGCGGCCCACGG 61.672 55.000 17.97 0.00 41.97 4.94
610 718 0.179086 CCAATATTTTGGCGGCCCAC 60.179 55.000 17.97 0.00 45.71 4.61
632 740 2.117156 CAGGGGCGGCAGAATTCTG 61.117 63.158 27.82 27.82 46.40 3.02
634 742 2.115291 GTCAGGGGCGGCAGAATTC 61.115 63.158 12.47 0.00 0.00 2.17
635 743 2.044946 GTCAGGGGCGGCAGAATT 60.045 61.111 12.47 0.00 0.00 2.17
636 744 3.011517 AGTCAGGGGCGGCAGAAT 61.012 61.111 12.47 1.47 0.00 2.40
637 745 3.706373 GAGTCAGGGGCGGCAGAA 61.706 66.667 12.47 0.00 0.00 3.02
643 751 4.697756 TTTGGCGAGTCAGGGGCG 62.698 66.667 0.00 0.00 0.00 6.13
644 752 1.866853 CTTTTTGGCGAGTCAGGGGC 61.867 60.000 0.00 0.00 0.00 5.80
646 754 1.001378 CAACTTTTTGGCGAGTCAGGG 60.001 52.381 0.00 0.00 0.00 4.45
647 755 1.001378 CCAACTTTTTGGCGAGTCAGG 60.001 52.381 0.00 0.00 46.09 3.86
658 766 5.716094 AGTTTAGTTTCACGCCAACTTTTT 58.284 33.333 0.32 0.00 35.95 1.94
659 767 5.319140 AGTTTAGTTTCACGCCAACTTTT 57.681 34.783 0.32 0.00 35.95 2.27
660 768 4.976224 AGTTTAGTTTCACGCCAACTTT 57.024 36.364 0.32 0.00 35.95 2.66
661 769 4.274214 GGTAGTTTAGTTTCACGCCAACTT 59.726 41.667 0.32 0.00 35.95 2.66
662 770 3.811497 GGTAGTTTAGTTTCACGCCAACT 59.189 43.478 0.73 0.73 38.13 3.16
663 771 3.363280 CGGTAGTTTAGTTTCACGCCAAC 60.363 47.826 0.00 0.00 0.00 3.77
666 774 1.728425 CCGGTAGTTTAGTTTCACGCC 59.272 52.381 0.00 0.00 0.00 5.68
667 775 2.156310 CACCGGTAGTTTAGTTTCACGC 59.844 50.000 6.87 0.00 0.00 5.34
668 776 2.156310 GCACCGGTAGTTTAGTTTCACG 59.844 50.000 6.87 0.00 0.00 4.35
669 777 3.396560 AGCACCGGTAGTTTAGTTTCAC 58.603 45.455 6.87 0.00 0.00 3.18
670 778 3.756933 AGCACCGGTAGTTTAGTTTCA 57.243 42.857 6.87 0.00 0.00 2.69
671 779 4.814147 AGTAGCACCGGTAGTTTAGTTTC 58.186 43.478 6.87 0.00 0.00 2.78
675 783 3.930848 CCAAAGTAGCACCGGTAGTTTAG 59.069 47.826 6.87 0.00 37.14 1.85
677 785 2.551504 CCCAAAGTAGCACCGGTAGTTT 60.552 50.000 6.87 4.60 38.96 2.66
678 786 1.002773 CCCAAAGTAGCACCGGTAGTT 59.997 52.381 6.87 0.00 31.61 2.24
679 787 0.611714 CCCAAAGTAGCACCGGTAGT 59.388 55.000 6.87 0.00 0.00 2.73
680 788 0.743345 GCCCAAAGTAGCACCGGTAG 60.743 60.000 6.87 2.73 0.00 3.18
681 789 1.297364 GCCCAAAGTAGCACCGGTA 59.703 57.895 6.87 0.00 0.00 4.02
682 790 2.033602 GCCCAAAGTAGCACCGGT 59.966 61.111 0.00 0.00 0.00 5.28
683 791 2.033448 TGCCCAAAGTAGCACCGG 59.967 61.111 0.00 0.00 33.08 5.28
684 792 2.040544 CCTGCCCAAAGTAGCACCG 61.041 63.158 0.00 0.00 34.68 4.94
686 794 2.343426 GCCCTGCCCAAAGTAGCAC 61.343 63.158 0.00 0.00 34.68 4.40
687 795 2.035626 GCCCTGCCCAAAGTAGCA 59.964 61.111 0.00 0.00 37.46 3.49
690 798 2.668632 CTCGCCCTGCCCAAAGTA 59.331 61.111 0.00 0.00 0.00 2.24
698 806 0.746659 AATAATTTGGCTCGCCCTGC 59.253 50.000 5.33 0.00 34.56 4.85
699 807 1.067516 CCAATAATTTGGCTCGCCCTG 59.932 52.381 5.33 0.00 45.71 4.45
700 808 1.402787 CCAATAATTTGGCTCGCCCT 58.597 50.000 5.33 0.00 45.71 5.19
711 819 4.360889 TGTTTGGATCAGGGCCAATAATT 58.639 39.130 6.18 0.00 44.30 1.40
712 820 3.992999 TGTTTGGATCAGGGCCAATAAT 58.007 40.909 6.18 0.00 44.30 1.28
713 821 3.464720 TGTTTGGATCAGGGCCAATAA 57.535 42.857 6.18 0.00 44.30 1.40
714 822 3.686227 ATGTTTGGATCAGGGCCAATA 57.314 42.857 6.18 0.00 44.30 1.90
715 823 2.555732 ATGTTTGGATCAGGGCCAAT 57.444 45.000 6.18 0.00 44.30 3.16
716 824 2.178580 GAATGTTTGGATCAGGGCCAA 58.821 47.619 6.18 0.00 43.31 4.52
718 826 0.740737 CGAATGTTTGGATCAGGGCC 59.259 55.000 0.00 0.00 0.00 5.80
719 827 0.101219 GCGAATGTTTGGATCAGGGC 59.899 55.000 0.00 0.00 0.00 5.19
720 828 0.740737 GGCGAATGTTTGGATCAGGG 59.259 55.000 0.00 0.00 0.00 4.45
722 830 1.133025 GTGGGCGAATGTTTGGATCAG 59.867 52.381 0.00 0.00 0.00 2.90
724 832 0.098728 CGTGGGCGAATGTTTGGATC 59.901 55.000 0.00 0.00 41.33 3.36
729 837 2.282180 AGGCGTGGGCGAATGTTT 60.282 55.556 0.00 0.00 41.24 2.83
730 838 3.055719 CAGGCGTGGGCGAATGTT 61.056 61.111 0.00 0.00 41.24 2.71
761 869 2.432510 CCTACAACAGCCCAACCAAAAA 59.567 45.455 0.00 0.00 0.00 1.94
762 870 2.035632 CCTACAACAGCCCAACCAAAA 58.964 47.619 0.00 0.00 0.00 2.44
763 871 1.698506 CCTACAACAGCCCAACCAAA 58.301 50.000 0.00 0.00 0.00 3.28
764 872 0.825840 GCCTACAACAGCCCAACCAA 60.826 55.000 0.00 0.00 0.00 3.67
765 873 1.228429 GCCTACAACAGCCCAACCA 60.228 57.895 0.00 0.00 0.00 3.67
769 877 2.034066 GCAGCCTACAACAGCCCA 59.966 61.111 0.00 0.00 0.00 5.36
770 878 0.967380 ATTGCAGCCTACAACAGCCC 60.967 55.000 0.00 0.00 0.00 5.19
771 879 0.453390 GATTGCAGCCTACAACAGCC 59.547 55.000 0.00 0.00 0.00 4.85
772 880 0.453390 GGATTGCAGCCTACAACAGC 59.547 55.000 0.74 0.00 0.00 4.40
773 881 1.825090 TGGATTGCAGCCTACAACAG 58.175 50.000 8.86 0.00 0.00 3.16
774 882 2.284754 TTGGATTGCAGCCTACAACA 57.715 45.000 8.86 0.00 0.00 3.33
775 883 2.295909 TGTTTGGATTGCAGCCTACAAC 59.704 45.455 8.86 9.06 0.00 3.32
778 886 1.135286 GCTGTTTGGATTGCAGCCTAC 60.135 52.381 8.86 7.56 46.93 3.18
779 887 1.176527 GCTGTTTGGATTGCAGCCTA 58.823 50.000 8.86 0.00 46.93 3.93
781 889 4.584688 GCTGTTTGGATTGCAGCC 57.415 55.556 4.60 0.97 46.93 4.85
783 891 1.542492 AGAGGCTGTTTGGATTGCAG 58.458 50.000 0.00 0.00 0.00 4.41
784 892 1.999648 AAGAGGCTGTTTGGATTGCA 58.000 45.000 0.00 0.00 0.00 4.08
785 893 4.021981 AGTTTAAGAGGCTGTTTGGATTGC 60.022 41.667 0.90 0.00 0.00 3.56
786 894 5.712152 AGTTTAAGAGGCTGTTTGGATTG 57.288 39.130 0.90 0.00 0.00 2.67
787 895 6.431234 CAGTAGTTTAAGAGGCTGTTTGGATT 59.569 38.462 0.90 0.00 0.00 3.01
788 896 5.940470 CAGTAGTTTAAGAGGCTGTTTGGAT 59.060 40.000 0.90 0.00 0.00 3.41
789 897 5.163237 ACAGTAGTTTAAGAGGCTGTTTGGA 60.163 40.000 0.90 0.00 34.02 3.53
791 899 6.430451 CAACAGTAGTTTAAGAGGCTGTTTG 58.570 40.000 0.90 0.00 42.83 2.93
792 900 5.531287 CCAACAGTAGTTTAAGAGGCTGTTT 59.469 40.000 0.90 0.00 42.83 2.83
793 901 5.063880 CCAACAGTAGTTTAAGAGGCTGTT 58.936 41.667 1.39 1.39 44.70 3.16
794 902 4.642429 CCAACAGTAGTTTAAGAGGCTGT 58.358 43.478 0.00 0.00 38.62 4.40
796 904 3.559384 GGCCAACAGTAGTTTAAGAGGCT 60.559 47.826 0.00 0.00 40.06 4.58
797 905 2.747989 GGCCAACAGTAGTTTAAGAGGC 59.252 50.000 0.00 0.00 39.68 4.70
799 907 6.575162 AAATGGCCAACAGTAGTTTAAGAG 57.425 37.500 10.96 0.00 35.28 2.85
983 2446 1.437160 GCTGAGCGGAGAAGAGAGG 59.563 63.158 0.00 0.00 0.00 3.69
1074 2537 1.938657 GCAGACGTAGAGCAGAGCCA 61.939 60.000 0.00 0.00 0.00 4.75
1096 2559 2.347490 GCACCCTCTCGGCTGAAA 59.653 61.111 0.00 0.00 33.26 2.69
1266 2729 3.443045 CAATGCCCGTGGTGGAGC 61.443 66.667 0.00 0.00 42.00 4.70
1314 2789 3.749609 CGTCGGGTTCTACAAATTTCCTT 59.250 43.478 0.00 0.00 0.00 3.36
1383 2858 1.005450 TCCCCTAATCTGCCACCAAAC 59.995 52.381 0.00 0.00 0.00 2.93
1444 2925 4.568760 GCATAAGCTAAGGTCACAAGAGAC 59.431 45.833 0.00 0.00 37.91 3.36
1445 2926 4.759782 GCATAAGCTAAGGTCACAAGAGA 58.240 43.478 0.00 0.00 37.91 3.10
1471 2952 9.543783 ACCTAATAAATTTCCTACAGTCGAATC 57.456 33.333 0.00 0.00 0.00 2.52
1524 3008 5.570320 AGAAAGCAATTTTCCTACTGGCTA 58.430 37.500 0.00 0.00 45.15 3.93
1531 3015 8.966868 CCCAGTATTTAGAAAGCAATTTTCCTA 58.033 33.333 0.00 0.00 45.15 2.94
1572 3056 6.619801 ACAGTTGTTGAAGAGTACCATTTC 57.380 37.500 0.00 0.00 0.00 2.17
1622 3106 8.877864 ACACCAATACCAATATTTCTTCAGAA 57.122 30.769 0.00 0.00 0.00 3.02
1633 3117 9.707957 ATTATTTCTCCAACACCAATACCAATA 57.292 29.630 0.00 0.00 0.00 1.90
1635 3119 9.184523 CTATTATTTCTCCAACACCAATACCAA 57.815 33.333 0.00 0.00 0.00 3.67
1730 3215 9.768662 TTCTAAAAAGTACTCCTACGTTGATTT 57.231 29.630 0.00 0.00 0.00 2.17
1731 3216 9.420551 CTTCTAAAAAGTACTCCTACGTTGATT 57.579 33.333 0.00 0.00 0.00 2.57
1732 3217 8.033626 CCTTCTAAAAAGTACTCCTACGTTGAT 58.966 37.037 0.00 0.00 0.00 2.57
1733 3218 7.231317 TCCTTCTAAAAAGTACTCCTACGTTGA 59.769 37.037 0.00 0.00 0.00 3.18
1734 3219 7.328005 GTCCTTCTAAAAAGTACTCCTACGTTG 59.672 40.741 0.00 0.00 0.00 4.10
1735 3220 7.374272 GTCCTTCTAAAAAGTACTCCTACGTT 58.626 38.462 0.00 0.00 0.00 3.99
1736 3221 6.348868 CGTCCTTCTAAAAAGTACTCCTACGT 60.349 42.308 0.00 0.00 0.00 3.57
1737 3222 6.026513 CGTCCTTCTAAAAAGTACTCCTACG 58.973 44.000 0.00 0.00 0.00 3.51
1738 3223 6.328714 CCGTCCTTCTAAAAAGTACTCCTAC 58.671 44.000 0.00 0.00 0.00 3.18
1739 3224 5.105595 GCCGTCCTTCTAAAAAGTACTCCTA 60.106 44.000 0.00 0.00 0.00 2.94
1740 3225 4.322574 GCCGTCCTTCTAAAAAGTACTCCT 60.323 45.833 0.00 0.00 0.00 3.69
1741 3226 3.931468 GCCGTCCTTCTAAAAAGTACTCC 59.069 47.826 0.00 0.00 0.00 3.85
1773 3258 4.624024 GGCTTCGTTAATTTAAAGTTGGGC 59.376 41.667 0.00 3.60 0.00 5.36
1777 3262 7.328493 GCTTGATGGCTTCGTTAATTTAAAGTT 59.672 33.333 0.00 0.00 0.00 2.66
1783 3268 4.782019 TGCTTGATGGCTTCGTTAATTT 57.218 36.364 0.00 0.00 0.00 1.82
1802 3287 0.746659 GCCATGTAATCCCAGGTTGC 59.253 55.000 0.00 0.00 0.00 4.17
1805 3290 0.258774 GGTGCCATGTAATCCCAGGT 59.741 55.000 0.00 0.00 0.00 4.00
1808 3293 1.959508 GCTTGGTGCCATGTAATCCCA 60.960 52.381 6.08 0.00 35.15 4.37
1983 3606 1.482593 AGACCGTAAGCTGATCCTTGG 59.517 52.381 0.00 0.00 0.00 3.61
1999 3622 4.912187 GCTTTTTGACGATTCTTTCAGACC 59.088 41.667 0.00 0.00 0.00 3.85
2018 3641 1.064166 CAGTCCCATGGATCAGGCTTT 60.064 52.381 15.22 0.00 32.73 3.51
2057 3680 1.315690 TCGTCGGTAGATAAGCCAGG 58.684 55.000 0.00 0.00 0.00 4.45
2061 3684 2.877168 TCCTCTTCGTCGGTAGATAAGC 59.123 50.000 0.00 0.00 0.00 3.09
2065 3688 2.022934 GGTTCCTCTTCGTCGGTAGAT 58.977 52.381 0.00 0.00 0.00 1.98
2073 3696 1.272554 GGGATGGGGTTCCTCTTCGT 61.273 60.000 0.00 0.00 35.97 3.85
2106 3729 0.036765 TCTACGGTTGCGATGCCTTT 60.037 50.000 0.00 0.00 0.00 3.11
2137 3767 0.809241 CGGCATCTGTTCCAGCTCTC 60.809 60.000 0.00 0.00 0.00 3.20
2144 3774 2.514824 GAGGCCGGCATCTGTTCC 60.515 66.667 32.61 10.54 0.00 3.62
2155 3785 2.343163 CTGCTCTAGGTTCGAGGCCG 62.343 65.000 0.00 0.00 37.07 6.13
2161 3791 1.293924 CAATGGCTGCTCTAGGTTCG 58.706 55.000 0.00 0.00 0.00 3.95
2165 3795 0.393402 TGCACAATGGCTGCTCTAGG 60.393 55.000 0.00 0.00 35.53 3.02
2185 3815 2.359850 GCCGTGTGAAGATGGCCA 60.360 61.111 8.56 8.56 41.57 5.36
2186 3816 1.926511 CTTGCCGTGTGAAGATGGCC 61.927 60.000 8.12 0.00 46.14 5.36
2199 3829 4.962122 GTGCACACACGCTTGCCG 62.962 66.667 13.17 0.00 44.21 5.69
2210 3849 0.242286 GGTGTGTGTGTTTGTGCACA 59.758 50.000 17.42 17.42 45.85 4.57
2212 3851 0.525311 CTGGTGTGTGTGTTTGTGCA 59.475 50.000 0.00 0.00 0.00 4.57
2213 3852 0.801836 GCTGGTGTGTGTGTTTGTGC 60.802 55.000 0.00 0.00 0.00 4.57
2218 3857 3.209097 GCGGCTGGTGTGTGTGTT 61.209 61.111 0.00 0.00 0.00 3.32
2220 3859 2.969806 GATGCGGCTGGTGTGTGTG 61.970 63.158 0.00 0.00 0.00 3.82
2239 3878 3.241530 TCGTCCAAGGGCAGCAGT 61.242 61.111 0.00 0.00 0.00 4.40
2241 3880 4.329545 GGTCGTCCAAGGGCAGCA 62.330 66.667 0.00 0.00 0.00 4.41
2253 3892 4.185394 GTTTTCCCAATGTTTTTGGTCGT 58.815 39.130 3.86 0.00 37.88 4.34
2267 3906 3.905493 TTATTCCCAGTGGTTTTCCCA 57.095 42.857 8.74 0.00 42.51 4.37
2274 3913 4.536090 TCTTCAGTGATTATTCCCAGTGGT 59.464 41.667 8.74 0.00 35.15 4.16
2290 4023 1.696336 TCTGCAGCTTCCTTCTTCAGT 59.304 47.619 9.47 0.00 0.00 3.41
2292 4025 2.936919 TTCTGCAGCTTCCTTCTTCA 57.063 45.000 9.47 0.00 0.00 3.02
2340 4073 1.621317 TCGTGGGTCTGTGCTCAATAA 59.379 47.619 0.00 0.00 0.00 1.40
2348 4081 1.665916 CTGCAGTCGTGGGTCTGTG 60.666 63.158 5.25 0.00 34.57 3.66
2349 4082 1.399744 TTCTGCAGTCGTGGGTCTGT 61.400 55.000 14.67 0.00 34.57 3.41
2350 4083 0.946221 GTTCTGCAGTCGTGGGTCTG 60.946 60.000 14.67 0.00 35.12 3.51
2351 4084 1.367840 GTTCTGCAGTCGTGGGTCT 59.632 57.895 14.67 0.00 0.00 3.85
2352 4085 0.531974 TTGTTCTGCAGTCGTGGGTC 60.532 55.000 14.67 0.00 0.00 4.46
2353 4086 0.107410 TTTGTTCTGCAGTCGTGGGT 60.107 50.000 14.67 0.00 0.00 4.51
2354 4087 0.588252 CTTTGTTCTGCAGTCGTGGG 59.412 55.000 14.67 0.00 0.00 4.61
2357 4090 1.221414 GAGCTTTGTTCTGCAGTCGT 58.779 50.000 14.67 0.00 0.00 4.34
2358 4091 1.194098 CTGAGCTTTGTTCTGCAGTCG 59.806 52.381 14.67 0.00 0.00 4.18
2362 4097 0.466007 TGCCTGAGCTTTGTTCTGCA 60.466 50.000 0.00 0.00 40.80 4.41
2385 4120 2.406401 CAATGTGGCTAGCGCTGC 59.594 61.111 22.90 20.77 36.09 5.25
2392 4127 1.678635 GGTGGCAGCAATGTGGCTA 60.679 57.895 12.58 0.00 43.68 3.93
2399 4134 2.361610 CTTCCCGGTGGCAGCAAT 60.362 61.111 17.80 0.00 0.00 3.56
2428 4163 3.011517 GAGCCTGGGCAGAAGGGA 61.012 66.667 14.39 0.00 44.88 4.20
2453 4188 4.624364 TGTGTCCCGGCAGTGCAG 62.624 66.667 18.61 13.49 0.00 4.41
2461 4196 3.883744 GAGTGTGGCTGTGTCCCGG 62.884 68.421 0.00 0.00 0.00 5.73
2482 4217 1.227853 GTGGTGTTCTTCGGTGGCT 60.228 57.895 0.00 0.00 0.00 4.75
2503 4238 5.245531 CAGCAAGTCACCCACTTATCTTTA 58.754 41.667 0.00 0.00 44.14 1.85
2517 4252 2.027192 GGTTCATAGGTCCAGCAAGTCA 60.027 50.000 0.00 0.00 0.00 3.41
2552 4287 2.867855 TTGTCGAGTCCAAGCGGCT 61.868 57.895 0.00 0.00 32.56 5.52
2559 4294 1.393487 TTCCGTGGTTGTCGAGTCCA 61.393 55.000 0.00 0.00 0.00 4.02
2575 4310 1.460273 ATGCGGTTGGTTGGTGTTCC 61.460 55.000 0.00 0.00 0.00 3.62
2578 4313 1.152860 TGATGCGGTTGGTTGGTGT 60.153 52.632 0.00 0.00 0.00 4.16
2579 4314 1.285641 GTGATGCGGTTGGTTGGTG 59.714 57.895 0.00 0.00 0.00 4.17
2580 4315 1.901464 GGTGATGCGGTTGGTTGGT 60.901 57.895 0.00 0.00 0.00 3.67
2626 4361 3.391665 CTCCATGGAGGCACCGTCC 62.392 68.421 31.14 0.00 42.61 4.79
2680 4418 1.341913 AAAGCCCAAAAACCCGCCTT 61.342 50.000 0.00 0.00 0.00 4.35
2701 4439 3.809013 CCATCCCAGTTCCCGGGG 61.809 72.222 23.50 6.77 46.67 5.73
2744 4483 0.677731 CAAATGAGCCGCTGGAGGAA 60.678 55.000 0.00 0.00 0.00 3.36
2745 4484 1.078214 CAAATGAGCCGCTGGAGGA 60.078 57.895 0.00 0.00 0.00 3.71
2760 4508 4.403137 GCGGCAGCGATGCACAAA 62.403 61.111 28.61 0.00 36.33 2.83
2812 4560 0.179018 GGTTGTGTGGGCTTGAGACT 60.179 55.000 0.00 0.00 0.00 3.24
2823 4571 1.827789 CCTGGGTGGTGGTTGTGTG 60.828 63.158 0.00 0.00 0.00 3.82
2833 4581 1.338136 ATACGGAGAAGCCTGGGTGG 61.338 60.000 0.00 0.00 39.35 4.61
2889 4637 0.621862 CCCCCTTAGCTCACTCCCTT 60.622 60.000 0.00 0.00 0.00 3.95
2890 4638 1.003573 CCCCCTTAGCTCACTCCCT 59.996 63.158 0.00 0.00 0.00 4.20
2912 4660 3.154589 GACCCGAATGTCAAGGTCC 57.845 57.895 0.00 0.00 42.49 4.46
2915 4663 0.613260 TCCAGACCCGAATGTCAAGG 59.387 55.000 0.00 0.00 37.73 3.61
2916 4664 1.550524 TCTCCAGACCCGAATGTCAAG 59.449 52.381 0.00 0.00 37.73 3.02
2917 4665 1.550524 CTCTCCAGACCCGAATGTCAA 59.449 52.381 0.00 0.00 37.73 3.18
2918 4666 1.186200 CTCTCCAGACCCGAATGTCA 58.814 55.000 0.00 0.00 37.73 3.58
2919 4667 1.475403 TCTCTCCAGACCCGAATGTC 58.525 55.000 0.00 0.00 35.43 3.06
2920 4668 2.166907 ATCTCTCCAGACCCGAATGT 57.833 50.000 0.00 0.00 0.00 2.71
2921 4669 3.491342 TCTATCTCTCCAGACCCGAATG 58.509 50.000 0.00 0.00 0.00 2.67
2922 4670 3.396276 TCTCTATCTCTCCAGACCCGAAT 59.604 47.826 0.00 0.00 0.00 3.34
2923 4671 2.778270 TCTCTATCTCTCCAGACCCGAA 59.222 50.000 0.00 0.00 0.00 4.30
2924 4672 2.370519 CTCTCTATCTCTCCAGACCCGA 59.629 54.545 0.00 0.00 0.00 5.14
2925 4673 2.370519 TCTCTCTATCTCTCCAGACCCG 59.629 54.545 0.00 0.00 0.00 5.28
2926 4674 4.447138 TTCTCTCTATCTCTCCAGACCC 57.553 50.000 0.00 0.00 0.00 4.46
2927 4675 6.015434 GGATTTTCTCTCTATCTCTCCAGACC 60.015 46.154 0.00 0.00 0.00 3.85
2928 4676 6.293955 CGGATTTTCTCTCTATCTCTCCAGAC 60.294 46.154 0.00 0.00 0.00 3.51
2929 4677 5.767665 CGGATTTTCTCTCTATCTCTCCAGA 59.232 44.000 0.00 0.00 0.00 3.86
2930 4678 5.534654 ACGGATTTTCTCTCTATCTCTCCAG 59.465 44.000 0.00 0.00 0.00 3.86
2931 4679 5.300539 CACGGATTTTCTCTCTATCTCTCCA 59.699 44.000 0.00 0.00 0.00 3.86
2932 4680 5.768317 CACGGATTTTCTCTCTATCTCTCC 58.232 45.833 0.00 0.00 0.00 3.71
2933 4681 5.219633 GCACGGATTTTCTCTCTATCTCTC 58.780 45.833 0.00 0.00 0.00 3.20
2934 4682 4.038642 GGCACGGATTTTCTCTCTATCTCT 59.961 45.833 0.00 0.00 0.00 3.10
2935 4683 4.303282 GGCACGGATTTTCTCTCTATCTC 58.697 47.826 0.00 0.00 0.00 2.75
2936 4684 4.329462 GGCACGGATTTTCTCTCTATCT 57.671 45.455 0.00 0.00 0.00 1.98
2953 4701 1.878522 CAGATAGTGGTCGCGGCAC 60.879 63.158 14.93 9.24 0.00 5.01
2954 4702 2.279502 GACAGATAGTGGTCGCGGCA 62.280 60.000 14.93 0.00 0.00 5.69
2955 4703 1.589196 GACAGATAGTGGTCGCGGC 60.589 63.158 6.13 3.04 0.00 6.53
2956 4704 4.711980 GACAGATAGTGGTCGCGG 57.288 61.111 6.13 0.00 0.00 6.46
2960 4708 2.645802 AGGAGTCGACAGATAGTGGTC 58.354 52.381 19.50 2.60 0.00 4.02
2961 4709 2.755655 CAAGGAGTCGACAGATAGTGGT 59.244 50.000 19.50 0.00 0.00 4.16
2962 4710 2.480416 GCAAGGAGTCGACAGATAGTGG 60.480 54.545 19.50 0.39 0.00 4.00
2963 4711 2.425312 AGCAAGGAGTCGACAGATAGTG 59.575 50.000 19.50 8.76 0.00 2.74
2964 4712 2.425312 CAGCAAGGAGTCGACAGATAGT 59.575 50.000 19.50 0.00 0.00 2.12
2965 4713 2.797792 GCAGCAAGGAGTCGACAGATAG 60.798 54.545 19.50 5.66 0.00 2.08
2966 4714 1.135139 GCAGCAAGGAGTCGACAGATA 59.865 52.381 19.50 0.00 0.00 1.98
2967 4715 0.108424 GCAGCAAGGAGTCGACAGAT 60.108 55.000 19.50 0.00 0.00 2.90
2968 4716 1.290324 GCAGCAAGGAGTCGACAGA 59.710 57.895 19.50 0.00 0.00 3.41
2969 4717 1.739562 GGCAGCAAGGAGTCGACAG 60.740 63.158 19.50 3.06 0.00 3.51
2970 4718 2.343758 GGCAGCAAGGAGTCGACA 59.656 61.111 19.50 0.00 0.00 4.35
2971 4719 2.435059 GGGCAGCAAGGAGTCGAC 60.435 66.667 7.70 7.70 0.00 4.20
2972 4720 2.293318 ATGGGCAGCAAGGAGTCGA 61.293 57.895 0.00 0.00 0.00 4.20
2973 4721 2.110967 CATGGGCAGCAAGGAGTCG 61.111 63.158 0.00 0.00 0.00 4.18
2974 4722 2.413142 GCATGGGCAGCAAGGAGTC 61.413 63.158 0.00 0.00 40.72 3.36
2975 4723 2.362120 GCATGGGCAGCAAGGAGT 60.362 61.111 0.00 0.00 40.72 3.85
2985 4733 0.037975 CAACTTCCTTGTGCATGGGC 60.038 55.000 0.00 0.00 41.68 5.36
2986 4734 0.604578 CCAACTTCCTTGTGCATGGG 59.395 55.000 0.00 0.00 0.00 4.00
2987 4735 0.037975 GCCAACTTCCTTGTGCATGG 60.038 55.000 0.00 0.00 0.00 3.66
2988 4736 0.963962 AGCCAACTTCCTTGTGCATG 59.036 50.000 0.00 0.00 31.77 4.06
2989 4737 1.251251 GAGCCAACTTCCTTGTGCAT 58.749 50.000 0.00 0.00 31.77 3.96
2990 4738 1.165907 CGAGCCAACTTCCTTGTGCA 61.166 55.000 0.00 0.00 31.77 4.57
2991 4739 1.576421 CGAGCCAACTTCCTTGTGC 59.424 57.895 0.00 0.00 0.00 4.57
2992 4740 1.165907 TGCGAGCCAACTTCCTTGTG 61.166 55.000 0.00 0.00 0.00 3.33
2993 4741 1.148273 TGCGAGCCAACTTCCTTGT 59.852 52.632 0.00 0.00 0.00 3.16
2994 4742 1.576421 GTGCGAGCCAACTTCCTTG 59.424 57.895 0.00 0.00 0.00 3.61
2995 4743 1.600916 GGTGCGAGCCAACTTCCTT 60.601 57.895 0.00 0.00 0.00 3.36
2996 4744 2.032681 GGTGCGAGCCAACTTCCT 59.967 61.111 0.00 0.00 0.00 3.36
2997 4745 2.032681 AGGTGCGAGCCAACTTCC 59.967 61.111 0.00 0.00 38.73 3.46
2998 4746 2.383527 CGAGGTGCGAGCCAACTTC 61.384 63.158 0.00 0.00 42.97 3.01
2999 4747 2.357517 CGAGGTGCGAGCCAACTT 60.358 61.111 0.00 0.00 42.97 2.66
3000 4748 4.379243 CCGAGGTGCGAGCCAACT 62.379 66.667 0.00 0.00 46.47 3.16
3023 4771 3.818787 GCATTGCCTCCGTGCAGG 61.819 66.667 0.00 0.00 43.21 4.85
3024 4772 3.818787 GGCATTGCCTCCGTGCAG 61.819 66.667 20.66 0.00 46.69 4.41
3040 4788 2.029666 CCTTAGATGGCGAGGCGG 59.970 66.667 0.00 0.00 0.00 6.13
3041 4789 2.663188 GCCTTAGATGGCGAGGCG 60.663 66.667 0.00 0.00 45.64 5.52
3048 4796 0.396060 GAGGAGGCAGCCTTAGATGG 59.604 60.000 17.46 0.00 38.73 3.51
3049 4797 0.033228 CGAGGAGGCAGCCTTAGATG 59.967 60.000 17.46 1.06 38.73 2.90
3050 4798 1.118356 CCGAGGAGGCAGCCTTAGAT 61.118 60.000 17.46 1.43 38.73 1.98
3051 4799 1.758514 CCGAGGAGGCAGCCTTAGA 60.759 63.158 17.46 0.00 38.73 2.10
3052 4800 2.818132 CCGAGGAGGCAGCCTTAG 59.182 66.667 17.46 7.39 38.73 2.18
3061 4809 2.232298 GACTCTGGTTGCCGAGGAGG 62.232 65.000 0.00 0.00 44.97 4.30
3062 4810 1.216710 GACTCTGGTTGCCGAGGAG 59.783 63.158 0.00 0.00 31.83 3.69
3063 4811 2.283529 GGACTCTGGTTGCCGAGGA 61.284 63.158 0.00 0.00 31.83 3.71
3064 4812 1.831652 AAGGACTCTGGTTGCCGAGG 61.832 60.000 10.15 0.00 31.83 4.63
3065 4813 0.035458 AAAGGACTCTGGTTGCCGAG 59.965 55.000 0.00 0.00 33.06 4.63
3066 4814 0.250295 CAAAGGACTCTGGTTGCCGA 60.250 55.000 0.00 0.00 0.00 5.54
3067 4815 1.856265 GCAAAGGACTCTGGTTGCCG 61.856 60.000 0.00 0.00 40.35 5.69
3068 4816 1.856265 CGCAAAGGACTCTGGTTGCC 61.856 60.000 1.95 0.00 42.66 4.52
3069 4817 0.884704 TCGCAAAGGACTCTGGTTGC 60.885 55.000 0.00 0.00 42.29 4.17
3070 4818 1.532868 CTTCGCAAAGGACTCTGGTTG 59.467 52.381 0.00 0.00 0.00 3.77
3071 4819 1.884235 CTTCGCAAAGGACTCTGGTT 58.116 50.000 0.00 0.00 0.00 3.67
3072 4820 3.614399 CTTCGCAAAGGACTCTGGT 57.386 52.632 0.00 0.00 0.00 4.00
3099 5016 2.260434 GCGGTGAGGTGCTCGTTA 59.740 61.111 0.00 0.00 32.35 3.18
3106 5023 2.432628 GAAGGTCGCGGTGAGGTG 60.433 66.667 6.13 0.00 0.00 4.00
3117 5034 0.108992 TGTGTACGCCGATGAAGGTC 60.109 55.000 3.51 0.00 0.00 3.85
3190 5107 1.409427 AGAGGCGATTAGGGTTTCTCG 59.591 52.381 0.00 0.00 0.00 4.04
3192 5109 2.432510 CTCAGAGGCGATTAGGGTTTCT 59.567 50.000 0.00 0.00 0.00 2.52
3202 5133 1.115467 CAGGGTTACTCAGAGGCGAT 58.885 55.000 1.53 0.00 0.00 4.58
3208 5139 2.000803 TCCTCTCCAGGGTTACTCAGA 58.999 52.381 0.00 0.00 40.80 3.27
3215 5146 1.155390 TGTCGTCCTCTCCAGGGTT 59.845 57.895 0.00 0.00 40.80 4.11
3223 5154 3.063084 GCCCTCGTGTCGTCCTCT 61.063 66.667 0.00 0.00 0.00 3.69
3241 5172 2.286523 CCTCCTGGACGCTTGAGGT 61.287 63.158 0.00 0.00 39.64 3.85
3244 5175 1.533033 TGACCTCCTGGACGCTTGA 60.533 57.895 0.00 0.00 37.04 3.02
3245 5176 1.374758 GTGACCTCCTGGACGCTTG 60.375 63.158 0.00 0.00 36.02 4.01
3314 5251 9.685828 AAAATTAATTGACGCAGCTTTAGTAAA 57.314 25.926 0.39 0.00 0.00 2.01
3316 5253 8.508062 TCAAAATTAATTGACGCAGCTTTAGTA 58.492 29.630 0.39 0.00 34.50 1.82
3317 5254 7.367285 TCAAAATTAATTGACGCAGCTTTAGT 58.633 30.769 0.39 0.00 34.50 2.24
3320 5257 6.033831 CGATCAAAATTAATTGACGCAGCTTT 59.966 34.615 0.39 0.00 41.78 3.51
3321 5258 5.512788 CGATCAAAATTAATTGACGCAGCTT 59.487 36.000 0.39 0.00 41.78 3.74
3322 5259 5.030295 CGATCAAAATTAATTGACGCAGCT 58.970 37.500 0.39 0.00 41.78 4.24
3323 5260 4.204978 CCGATCAAAATTAATTGACGCAGC 59.795 41.667 0.39 0.00 41.78 5.25
3324 5261 5.568482 TCCGATCAAAATTAATTGACGCAG 58.432 37.500 0.39 0.00 41.78 5.18
3325 5262 5.448496 CCTCCGATCAAAATTAATTGACGCA 60.448 40.000 0.39 0.00 41.78 5.24
3326 5263 4.970003 CCTCCGATCAAAATTAATTGACGC 59.030 41.667 0.39 0.00 41.78 5.19
3327 5264 6.358118 TCCTCCGATCAAAATTAATTGACG 57.642 37.500 0.39 4.62 41.78 4.35
3328 5265 7.762382 ACTTCCTCCGATCAAAATTAATTGAC 58.238 34.615 0.39 0.00 41.78 3.18
3329 5266 7.938140 ACTTCCTCCGATCAAAATTAATTGA 57.062 32.000 0.39 0.00 43.03 2.57
3330 5267 8.893727 AGTACTTCCTCCGATCAAAATTAATTG 58.106 33.333 0.39 0.00 0.00 2.32
3331 5268 9.462606 AAGTACTTCCTCCGATCAAAATTAATT 57.537 29.630 1.12 0.00 0.00 1.40
3334 5271 7.983484 GGTAAGTACTTCCTCCGATCAAAATTA 59.017 37.037 12.39 0.00 0.00 1.40
3336 5273 6.070424 TGGTAAGTACTTCCTCCGATCAAAAT 60.070 38.462 12.39 0.00 0.00 1.82
3338 5275 4.773674 TGGTAAGTACTTCCTCCGATCAAA 59.226 41.667 12.39 0.00 0.00 2.69
3341 5278 4.643784 TCTTGGTAAGTACTTCCTCCGATC 59.356 45.833 12.39 0.00 0.00 3.69
3342 5279 4.607239 TCTTGGTAAGTACTTCCTCCGAT 58.393 43.478 12.39 0.00 0.00 4.18
3344 5281 3.429135 GCTCTTGGTAAGTACTTCCTCCG 60.429 52.174 12.39 6.49 0.00 4.63
3345 5282 3.770388 AGCTCTTGGTAAGTACTTCCTCC 59.230 47.826 12.39 13.36 0.00 4.30
3346 5283 4.707934 AGAGCTCTTGGTAAGTACTTCCTC 59.292 45.833 11.45 4.25 0.00 3.71
3347 5284 4.464597 CAGAGCTCTTGGTAAGTACTTCCT 59.535 45.833 15.27 0.00 0.00 3.36
3348 5285 4.221041 ACAGAGCTCTTGGTAAGTACTTCC 59.779 45.833 15.27 13.37 0.00 3.46
3349 5286 5.394224 ACAGAGCTCTTGGTAAGTACTTC 57.606 43.478 15.27 4.04 0.00 3.01
3350 5287 5.070580 ACAACAGAGCTCTTGGTAAGTACTT 59.929 40.000 15.27 13.68 0.00 2.24
3513 5655 5.004726 GCAAATCAACATCAATAGTTTCGCC 59.995 40.000 0.00 0.00 0.00 5.54
3515 5657 9.507280 AATAGCAAATCAACATCAATAGTTTCG 57.493 29.630 0.00 0.00 0.00 3.46
3592 5775 5.377478 AGACATATAAGGTTTGCCCTAAGC 58.623 41.667 0.00 0.00 45.47 3.09
3619 5802 5.012148 ACATATAATCCCTCTGTCCCGAAAG 59.988 44.000 0.00 0.00 0.00 2.62
3713 5901 6.636850 GCAACAAGACGATGATTTGTAAAACT 59.363 34.615 0.00 0.00 34.18 2.66
3768 5957 3.080300 TCCTACGGTGAAAATTGCCAT 57.920 42.857 0.00 0.00 0.00 4.40
3800 5989 7.746475 GCTTCACAATACAAAAGACATCAGTAC 59.254 37.037 0.00 0.00 0.00 2.73
3802 5991 6.294176 GGCTTCACAATACAAAAGACATCAGT 60.294 38.462 0.00 0.00 0.00 3.41
3854 6043 3.669251 AGGTGCACTTCTCTAACAGAC 57.331 47.619 17.98 0.00 0.00 3.51
3873 6062 7.951530 AAACTTGTAGGATTGCAAAATGAAG 57.048 32.000 1.71 4.15 0.00 3.02
3882 6071 6.569179 TTCAGGTTAAACTTGTAGGATTGC 57.431 37.500 0.00 0.00 0.00 3.56
3934 6123 4.625028 AGAAGGCAATTTTCAAGAACAGC 58.375 39.130 0.00 0.00 0.00 4.40
3948 6137 4.494091 AAGCTCTAATGCTAGAAGGCAA 57.506 40.909 0.00 0.00 45.68 4.52
4015 6204 8.757307 TTTAATCCTCCACTATCCCTATGAAT 57.243 34.615 0.00 0.00 0.00 2.57
4073 6263 4.344102 CCTATGGGATTCAGTCCTACGAAA 59.656 45.833 0.00 0.00 46.91 3.46
4079 6269 6.347061 AAATTTCCTATGGGATTCAGTCCT 57.653 37.500 0.00 0.00 46.91 3.85
4099 6289 5.312443 ACTGTAGTGGGTTCCTTAGGAAAAT 59.688 40.000 16.06 2.29 43.86 1.82
4113 6303 5.556915 TCCTTTGAAATGTACTGTAGTGGG 58.443 41.667 0.00 0.00 0.00 4.61
4139 6329 6.721208 ACATGAGTTTGGAGTGGATGTAAAAT 59.279 34.615 0.00 0.00 0.00 1.82
4172 6364 7.027161 CGATTGTACCATAGGGAAAACAAAAG 58.973 38.462 14.32 9.54 37.89 2.27
4177 6369 6.036844 GTCTTCGATTGTACCATAGGGAAAAC 59.963 42.308 0.00 0.00 38.05 2.43
4178 6370 6.110707 GTCTTCGATTGTACCATAGGGAAAA 58.889 40.000 0.00 0.00 38.05 2.29
4182 6374 4.099573 AGTGTCTTCGATTGTACCATAGGG 59.900 45.833 0.00 0.00 41.29 3.53
4197 6389 0.586802 GTCCGCACCAAAGTGTCTTC 59.413 55.000 0.00 0.00 46.35 2.87
4219 6411 1.762460 ACCCGGATCCTACAGGCTG 60.762 63.158 14.16 14.16 34.44 4.85
4221 6413 2.808206 CCACCCGGATCCTACAGGC 61.808 68.421 10.75 0.00 34.44 4.85
4382 6576 4.853924 AGCAAACAGGGAACAATGTTAG 57.146 40.909 0.00 0.00 38.53 2.34
4545 6739 6.035112 CGACAGAGTCTTGCCTTTAAGATTAC 59.965 42.308 0.00 0.00 38.79 1.89
4570 6764 3.113745 CCTGACATCAATGCCGCC 58.886 61.111 0.00 0.00 0.00 6.13
4576 6770 1.538047 ACTTTGCGCCTGACATCAAT 58.462 45.000 4.18 0.00 0.00 2.57
4788 6984 8.818860 ACACAAGTATTTTACACCCTGTCTATA 58.181 33.333 0.00 0.00 0.00 1.31
4856 7052 8.463930 AACACAAAGGTAGATCTGAAAATTGA 57.536 30.769 5.18 0.00 0.00 2.57
5001 7197 2.135933 CAGGACGGTGTTCTTGAAGAC 58.864 52.381 0.00 2.52 0.00 3.01
5019 7215 0.530744 TCGAAGGTTGATCCCGACAG 59.469 55.000 0.00 0.00 36.75 3.51
5039 7235 3.566523 GACGTCCTTCATATTAGCCTCG 58.433 50.000 3.51 0.00 0.00 4.63
5042 7238 3.637998 TCGACGTCCTTCATATTAGCC 57.362 47.619 10.58 0.00 0.00 3.93
5081 7277 3.620966 GCTTCTGAAGGTCAATGTAGCCT 60.621 47.826 18.38 0.00 0.00 4.58
5132 7328 2.421952 GCATCCCAGCTCCAATCTTGTA 60.422 50.000 0.00 0.00 0.00 2.41
5195 7391 7.618137 ACTTACTAATCTTTACCGGACAATGT 58.382 34.615 9.46 0.00 0.00 2.71
5199 7395 6.127535 CCTGACTTACTAATCTTTACCGGACA 60.128 42.308 9.46 0.00 0.00 4.02
5254 7450 8.532819 TGTGGTATGATATTTGCGGTATACATA 58.467 33.333 5.01 0.00 0.00 2.29
5255 7451 7.390823 TGTGGTATGATATTTGCGGTATACAT 58.609 34.615 5.01 0.00 0.00 2.29
5265 7822 4.577693 AGTGCAGCTGTGGTATGATATTTG 59.422 41.667 16.64 0.00 0.00 2.32
5431 7988 4.816126 AGTACAGTAGGGCCTCATCAATA 58.184 43.478 10.74 0.00 0.00 1.90
5432 7989 3.658725 AGTACAGTAGGGCCTCATCAAT 58.341 45.455 10.74 0.00 0.00 2.57
5762 8328 0.898320 CGTGGTTCCTCTGGATGACT 59.102 55.000 0.00 0.00 0.00 3.41
5783 8349 2.735772 CCACCACCGGAGCAGCTAT 61.736 63.158 9.46 0.00 0.00 2.97
5927 8493 2.538939 GGATTATTTCAAGCGTGCGGTC 60.539 50.000 0.00 0.00 0.00 4.79
6014 8604 2.619646 TGAACATCGATTCCCATGCATG 59.380 45.455 20.19 20.19 0.00 4.06
6022 8612 4.212214 GCCATAGTCTTGAACATCGATTCC 59.788 45.833 0.00 0.00 0.00 3.01
6028 8618 1.599542 GCCGCCATAGTCTTGAACATC 59.400 52.381 0.00 0.00 0.00 3.06
6040 8630 2.873472 CAGGTAAAAATACGCCGCCATA 59.127 45.455 0.00 0.00 0.00 2.74
6052 8642 5.223449 ACAAGGATCTCGACAGGTAAAAA 57.777 39.130 0.00 0.00 0.00 1.94
6053 8643 4.617530 CGACAAGGATCTCGACAGGTAAAA 60.618 45.833 0.00 0.00 31.24 1.52
6180 8770 1.153005 GAGCAGGAGGCCATTGAGG 60.153 63.158 5.01 0.00 46.50 3.86
6226 8816 0.247576 ATCATGACGACGACGACGAC 60.248 55.000 25.15 19.21 42.66 4.34
6227 8817 0.247537 CATCATGACGACGACGACGA 60.248 55.000 25.15 5.17 42.66 4.20
6316 8906 2.047655 AACGGCGAAGATGCGGAA 60.048 55.556 16.62 0.00 38.43 4.30
6322 8912 0.108804 ACGATGACAACGGCGAAGAT 60.109 50.000 16.62 0.00 34.93 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.