Multiple sequence alignment - TraesCS1B01G188500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G188500 chr1B 100.000 4640 0 0 1 4640 338016587 338011948 0.000000e+00 8569.0
1 TraesCS1B01G188500 chr1B 100.000 2270 0 0 5082 7351 338011506 338009237 0.000000e+00 4193.0
2 TraesCS1B01G188500 chr1B 90.028 722 59 10 250 960 667908533 667907814 0.000000e+00 922.0
3 TraesCS1B01G188500 chr1B 94.783 115 1 2 140 249 33818265 33818151 2.730000e-39 174.0
4 TraesCS1B01G188500 chr1D 96.971 2212 53 3 961 3172 237360276 237362473 0.000000e+00 3701.0
5 TraesCS1B01G188500 chr1D 98.438 1024 14 2 5278 6299 237362459 237363482 0.000000e+00 1801.0
6 TraesCS1B01G188500 chr1D 95.918 49 1 1 1776 1824 202564389 202564342 2.200000e-10 78.7
7 TraesCS1B01G188500 chr2D 92.545 1489 92 7 3167 4638 452373937 452372451 0.000000e+00 2117.0
8 TraesCS1B01G188500 chr2D 100.000 29 0 0 1752 1780 400381842 400381814 4.000000e-03 54.7
9 TraesCS1B01G188500 chr5B 92.059 1486 104 6 3167 4640 504925771 504927254 0.000000e+00 2078.0
10 TraesCS1B01G188500 chr5B 92.219 1478 98 10 3169 4640 615002660 615004126 0.000000e+00 2076.0
11 TraesCS1B01G188500 chr5B 91.098 1494 98 14 3165 4640 532931846 532930370 0.000000e+00 1989.0
12 TraesCS1B01G188500 chr5B 92.110 1052 80 3 6301 7351 704216347 704215298 0.000000e+00 1480.0
13 TraesCS1B01G188500 chr5B 91.912 1051 83 2 6301 7351 7909292 7910340 0.000000e+00 1469.0
14 TraesCS1B01G188500 chr5B 90.190 683 47 5 3964 4640 67009046 67009714 0.000000e+00 872.0
15 TraesCS1B01G188500 chr5B 93.897 213 7 3 49 255 595113392 595113604 4.280000e-82 316.0
16 TraesCS1B01G188500 chr5B 90.000 70 3 2 1757 1825 564187860 564187926 3.650000e-13 87.9
17 TraesCS1B01G188500 chr3D 92.100 1481 96 15 3167 4640 482860244 482861710 0.000000e+00 2067.0
18 TraesCS1B01G188500 chr3D 87.137 723 56 16 250 961 48169616 48170312 0.000000e+00 785.0
19 TraesCS1B01G188500 chr3D 87.013 77 7 2 1754 1827 533669968 533669892 4.730000e-12 84.2
20 TraesCS1B01G188500 chr6B 92.008 1439 97 7 3168 4593 149166934 149165501 0.000000e+00 2004.0
21 TraesCS1B01G188500 chr6B 93.043 115 3 2 140 249 301571746 301571632 5.900000e-36 163.0
22 TraesCS1B01G188500 chr4B 91.198 1477 105 13 3166 4635 180943422 180941964 0.000000e+00 1984.0
23 TraesCS1B01G188500 chr4B 92.333 1213 81 8 3164 4368 417353485 417354693 0.000000e+00 1714.0
24 TraesCS1B01G188500 chr4B 97.778 45 1 0 1782 1826 144758329 144758285 2.200000e-10 78.7
25 TraesCS1B01G188500 chr7B 91.528 1440 106 11 3215 4640 740230204 740228767 0.000000e+00 1969.0
26 TraesCS1B01G188500 chr7B 90.128 1479 118 15 3167 4640 481278863 481280318 0.000000e+00 1897.0
27 TraesCS1B01G188500 chr7B 92.409 1212 84 5 3165 4368 639786259 639785048 0.000000e+00 1722.0
28 TraesCS1B01G188500 chr5D 90.148 1482 121 11 3166 4640 47783909 47785372 0.000000e+00 1905.0
29 TraesCS1B01G188500 chr5D 92.932 1047 71 3 6307 7351 442609359 442608314 0.000000e+00 1520.0
30 TraesCS1B01G188500 chr1A 90.789 1368 79 17 1821 3172 301129481 301130817 0.000000e+00 1784.0
31 TraesCS1B01G188500 chr1A 96.721 732 22 1 5568 6299 301133299 301134028 0.000000e+00 1218.0
32 TraesCS1B01G188500 chr1A 93.701 635 33 5 961 1593 301128285 301128914 0.000000e+00 944.0
33 TraesCS1B01G188500 chr1A 94.483 290 12 3 5278 5566 301130803 301131089 1.880000e-120 444.0
34 TraesCS1B01G188500 chr1A 91.935 62 1 1 1754 1815 399227861 399227918 4.730000e-12 84.2
35 TraesCS1B01G188500 chrUn 95.433 1051 47 1 6301 7351 47528194 47529243 0.000000e+00 1674.0
36 TraesCS1B01G188500 chr3B 94.028 1055 61 2 6298 7351 627750198 627751251 0.000000e+00 1598.0
37 TraesCS1B01G188500 chr3B 92.153 1045 78 4 6307 7351 756626223 756627263 0.000000e+00 1472.0
38 TraesCS1B01G188500 chr3B 88.657 432 30 8 252 673 74727586 74727164 6.580000e-140 508.0
39 TraesCS1B01G188500 chr3B 94.783 115 1 2 140 249 556680880 556680766 2.730000e-39 174.0
40 TraesCS1B01G188500 chr3B 89.524 105 5 3 250 348 31163179 31163075 2.150000e-25 128.0
41 TraesCS1B01G188500 chr4A 93.530 1051 66 2 6301 7351 734679329 734678281 0.000000e+00 1563.0
42 TraesCS1B01G188500 chr4A 88.462 156 18 0 58 213 711885123 711885278 9.740000e-44 189.0
43 TraesCS1B01G188500 chr6D 92.789 1054 72 4 6299 7351 467169522 467168472 0.000000e+00 1522.0
44 TraesCS1B01G188500 chr6D 92.617 149 11 0 52 200 411223884 411224032 1.610000e-51 215.0
45 TraesCS1B01G188500 chr2B 92.177 1061 78 5 6291 7349 787792302 787793359 0.000000e+00 1495.0
46 TraesCS1B01G188500 chr2B 93.239 710 45 3 250 957 363635940 363635232 0.000000e+00 1042.0
47 TraesCS1B01G188500 chr2B 93.913 115 2 2 140 249 66191600 66191486 1.270000e-37 169.0
48 TraesCS1B01G188500 chr7A 93.065 721 37 9 250 960 6779771 6780488 0.000000e+00 1042.0
49 TraesCS1B01G188500 chr7A 87.129 101 12 1 55 154 22535818 22535718 6.030000e-21 113.0
50 TraesCS1B01G188500 chr5A 90.430 721 56 10 250 960 420392130 420392847 0.000000e+00 937.0
51 TraesCS1B01G188500 chr5A 88.981 726 62 10 250 961 166540963 166541684 0.000000e+00 881.0
52 TraesCS1B01G188500 chr5A 89.103 725 56 12 250 960 379036336 379035621 0.000000e+00 880.0
53 TraesCS1B01G188500 chr5A 88.606 667 56 12 250 905 269853205 269853862 0.000000e+00 793.0
54 TraesCS1B01G188500 chr5A 100.000 44 0 0 1781 1824 76958148 76958191 1.700000e-11 82.4
55 TraesCS1B01G188500 chr6A 89.765 723 56 12 250 960 93167762 93167046 0.000000e+00 909.0
56 TraesCS1B01G188500 chr3A 89.184 527 48 9 445 965 365958339 365958862 0.000000e+00 649.0
57 TraesCS1B01G188500 chr3A 85.354 198 15 2 5082 5278 366883755 366883571 7.530000e-45 193.0
58 TraesCS1B01G188500 chr3A 96.610 59 1 1 1756 1814 405692763 405692706 6.070000e-16 97.1
59 TraesCS1B01G188500 chr3A 87.671 73 7 2 1753 1823 669525357 669525429 4.730000e-12 84.2
60 TraesCS1B01G188500 chr4D 87.310 197 12 2 5082 5278 50806609 50806792 5.780000e-51 213.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G188500 chr1B 338009237 338016587 7350 True 6381.0 8569 100.0000 1 7351 2 chr1B.!!$R3 7350
1 TraesCS1B01G188500 chr1B 667907814 667908533 719 True 922.0 922 90.0280 250 960 1 chr1B.!!$R2 710
2 TraesCS1B01G188500 chr1D 237360276 237363482 3206 False 2751.0 3701 97.7045 961 6299 2 chr1D.!!$F1 5338
3 TraesCS1B01G188500 chr2D 452372451 452373937 1486 True 2117.0 2117 92.5450 3167 4638 1 chr2D.!!$R2 1471
4 TraesCS1B01G188500 chr5B 504925771 504927254 1483 False 2078.0 2078 92.0590 3167 4640 1 chr5B.!!$F3 1473
5 TraesCS1B01G188500 chr5B 615002660 615004126 1466 False 2076.0 2076 92.2190 3169 4640 1 chr5B.!!$F6 1471
6 TraesCS1B01G188500 chr5B 532930370 532931846 1476 True 1989.0 1989 91.0980 3165 4640 1 chr5B.!!$R1 1475
7 TraesCS1B01G188500 chr5B 704215298 704216347 1049 True 1480.0 1480 92.1100 6301 7351 1 chr5B.!!$R2 1050
8 TraesCS1B01G188500 chr5B 7909292 7910340 1048 False 1469.0 1469 91.9120 6301 7351 1 chr5B.!!$F1 1050
9 TraesCS1B01G188500 chr5B 67009046 67009714 668 False 872.0 872 90.1900 3964 4640 1 chr5B.!!$F2 676
10 TraesCS1B01G188500 chr3D 482860244 482861710 1466 False 2067.0 2067 92.1000 3167 4640 1 chr3D.!!$F2 1473
11 TraesCS1B01G188500 chr3D 48169616 48170312 696 False 785.0 785 87.1370 250 961 1 chr3D.!!$F1 711
12 TraesCS1B01G188500 chr6B 149165501 149166934 1433 True 2004.0 2004 92.0080 3168 4593 1 chr6B.!!$R1 1425
13 TraesCS1B01G188500 chr4B 180941964 180943422 1458 True 1984.0 1984 91.1980 3166 4635 1 chr4B.!!$R2 1469
14 TraesCS1B01G188500 chr4B 417353485 417354693 1208 False 1714.0 1714 92.3330 3164 4368 1 chr4B.!!$F1 1204
15 TraesCS1B01G188500 chr7B 740228767 740230204 1437 True 1969.0 1969 91.5280 3215 4640 1 chr7B.!!$R2 1425
16 TraesCS1B01G188500 chr7B 481278863 481280318 1455 False 1897.0 1897 90.1280 3167 4640 1 chr7B.!!$F1 1473
17 TraesCS1B01G188500 chr7B 639785048 639786259 1211 True 1722.0 1722 92.4090 3165 4368 1 chr7B.!!$R1 1203
18 TraesCS1B01G188500 chr5D 47783909 47785372 1463 False 1905.0 1905 90.1480 3166 4640 1 chr5D.!!$F1 1474
19 TraesCS1B01G188500 chr5D 442608314 442609359 1045 True 1520.0 1520 92.9320 6307 7351 1 chr5D.!!$R1 1044
20 TraesCS1B01G188500 chr1A 301128285 301134028 5743 False 1097.5 1784 93.9235 961 6299 4 chr1A.!!$F2 5338
21 TraesCS1B01G188500 chrUn 47528194 47529243 1049 False 1674.0 1674 95.4330 6301 7351 1 chrUn.!!$F1 1050
22 TraesCS1B01G188500 chr3B 627750198 627751251 1053 False 1598.0 1598 94.0280 6298 7351 1 chr3B.!!$F1 1053
23 TraesCS1B01G188500 chr3B 756626223 756627263 1040 False 1472.0 1472 92.1530 6307 7351 1 chr3B.!!$F2 1044
24 TraesCS1B01G188500 chr4A 734678281 734679329 1048 True 1563.0 1563 93.5300 6301 7351 1 chr4A.!!$R1 1050
25 TraesCS1B01G188500 chr6D 467168472 467169522 1050 True 1522.0 1522 92.7890 6299 7351 1 chr6D.!!$R1 1052
26 TraesCS1B01G188500 chr2B 787792302 787793359 1057 False 1495.0 1495 92.1770 6291 7349 1 chr2B.!!$F1 1058
27 TraesCS1B01G188500 chr2B 363635232 363635940 708 True 1042.0 1042 93.2390 250 957 1 chr2B.!!$R2 707
28 TraesCS1B01G188500 chr7A 6779771 6780488 717 False 1042.0 1042 93.0650 250 960 1 chr7A.!!$F1 710
29 TraesCS1B01G188500 chr5A 420392130 420392847 717 False 937.0 937 90.4300 250 960 1 chr5A.!!$F4 710
30 TraesCS1B01G188500 chr5A 166540963 166541684 721 False 881.0 881 88.9810 250 961 1 chr5A.!!$F2 711
31 TraesCS1B01G188500 chr5A 379035621 379036336 715 True 880.0 880 89.1030 250 960 1 chr5A.!!$R1 710
32 TraesCS1B01G188500 chr5A 269853205 269853862 657 False 793.0 793 88.6060 250 905 1 chr5A.!!$F3 655
33 TraesCS1B01G188500 chr6A 93167046 93167762 716 True 909.0 909 89.7650 250 960 1 chr6A.!!$R1 710
34 TraesCS1B01G188500 chr3A 365958339 365958862 523 False 649.0 649 89.1840 445 965 1 chr3A.!!$F1 520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
144 145 0.098376 GCTCGCTCAAGCAAATGAGG 59.902 55.0 13.80 6.41 45.60 3.86 F
215 216 0.235665 CTCTGCTTTTTGCTTCGCGA 59.764 50.0 3.71 3.71 43.37 5.87 F
216 217 0.235665 TCTGCTTTTTGCTTCGCGAG 59.764 50.0 9.59 4.97 43.37 5.03 F
2213 2651 0.261991 TGCTTCGAGTATCCTCCCCT 59.738 55.0 0.00 0.00 33.93 4.79 F
3607 4065 0.464373 ATGTCCATCGCCACACATCC 60.464 55.0 0.00 0.00 0.00 3.51 F
3933 4399 0.249911 GATCCGTCCCAAGGAATCCG 60.250 60.0 0.00 0.00 41.69 4.18 F
4005 4472 0.541863 CCTAGATCCGGCAACCAACT 59.458 55.0 0.00 0.00 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1283 1309 4.327885 CGAGAGGAATGCGTAGGC 57.672 61.111 0.00 0.0 40.52 3.93 R
2179 2607 2.938451 CGAAGCACATATGAGCCAAAGA 59.062 45.455 19.79 0.0 31.86 2.52 R
2259 2697 9.726438 ACTTTAAGTAGCTAATCAAATGTCACT 57.274 29.630 0.00 0.0 0.00 3.41 R
3798 4257 0.033503 CCAACCCCACCCAATACTCC 60.034 60.000 0.00 0.0 0.00 3.85 R
5273 5761 0.039888 TAAAAGAAACTTGCGCCCGC 60.040 50.000 4.18 5.6 42.35 6.13 R
5932 8629 1.177895 TTTTCGGGAGCTGCATTGCA 61.178 50.000 11.50 11.5 36.92 4.08 R
6869 9567 2.355209 GCTCAGTCTCTTTGGTTAGGGG 60.355 54.545 0.00 0.0 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.059459 CGACCAGTCGCGTTGCAC 62.059 66.667 5.77 0.00 46.50 4.57
23 24 2.964925 GACCAGTCGCGTTGCACA 60.965 61.111 5.77 0.00 0.00 4.57
24 25 2.512745 ACCAGTCGCGTTGCACAA 60.513 55.556 5.77 0.00 0.00 3.33
25 26 2.052237 CCAGTCGCGTTGCACAAC 60.052 61.111 5.77 3.37 37.92 3.32
26 27 2.534019 CCAGTCGCGTTGCACAACT 61.534 57.895 5.77 0.00 39.08 3.16
27 28 1.083401 CAGTCGCGTTGCACAACTC 60.083 57.895 5.77 2.87 39.08 3.01
28 29 2.128128 GTCGCGTTGCACAACTCG 60.128 61.111 17.26 17.26 46.95 4.18
31 32 4.725758 GCGTTGCACAACTCGATC 57.274 55.556 11.44 0.00 39.08 3.69
32 33 1.132640 GCGTTGCACAACTCGATCC 59.867 57.895 11.44 0.00 39.08 3.36
33 34 1.416049 CGTTGCACAACTCGATCCG 59.584 57.895 11.44 0.00 39.08 4.18
34 35 1.132640 GTTGCACAACTCGATCCGC 59.867 57.895 6.27 0.00 38.25 5.54
35 36 2.379634 TTGCACAACTCGATCCGCG 61.380 57.895 0.00 0.00 42.69 6.46
60 61 2.594592 GGCACTCAGGGCGTGTTT 60.595 61.111 7.12 0.00 34.91 2.83
61 62 2.639286 GCACTCAGGGCGTGTTTG 59.361 61.111 7.12 6.74 34.91 2.93
62 63 2.908073 GCACTCAGGGCGTGTTTGG 61.908 63.158 7.12 0.00 34.91 3.28
63 64 1.227823 CACTCAGGGCGTGTTTGGA 60.228 57.895 7.12 0.00 0.00 3.53
64 65 0.606401 CACTCAGGGCGTGTTTGGAT 60.606 55.000 7.12 0.00 0.00 3.41
65 66 0.321653 ACTCAGGGCGTGTTTGGATC 60.322 55.000 7.12 0.00 0.00 3.36
66 67 1.002624 TCAGGGCGTGTTTGGATCC 60.003 57.895 4.20 4.20 0.00 3.36
67 68 2.046285 CAGGGCGTGTTTGGATCCC 61.046 63.158 9.90 0.00 37.24 3.85
68 69 2.034999 GGGCGTGTTTGGATCCCA 59.965 61.111 9.90 0.00 36.96 4.37
69 70 1.379843 GGGCGTGTTTGGATCCCAT 60.380 57.895 9.90 0.00 36.96 4.00
70 71 1.666209 GGGCGTGTTTGGATCCCATG 61.666 60.000 9.90 6.81 36.96 3.66
71 72 1.139520 GCGTGTTTGGATCCCATGC 59.860 57.895 15.25 15.25 31.53 4.06
72 73 1.809207 CGTGTTTGGATCCCATGCC 59.191 57.895 9.90 0.00 31.53 4.40
73 74 1.666209 CGTGTTTGGATCCCATGCCC 61.666 60.000 9.90 0.00 31.53 5.36
74 75 0.614415 GTGTTTGGATCCCATGCCCA 60.614 55.000 9.90 0.00 31.53 5.36
75 76 0.614415 TGTTTGGATCCCATGCCCAC 60.614 55.000 9.90 0.00 31.53 4.61
76 77 0.614415 GTTTGGATCCCATGCCCACA 60.614 55.000 9.90 0.00 31.53 4.17
77 78 0.614415 TTTGGATCCCATGCCCACAC 60.614 55.000 9.90 0.00 31.53 3.82
78 79 1.798087 TTGGATCCCATGCCCACACA 61.798 55.000 9.90 0.00 31.53 3.72
79 80 1.754234 GGATCCCATGCCCACACAC 60.754 63.158 0.00 0.00 0.00 3.82
80 81 1.754234 GATCCCATGCCCACACACC 60.754 63.158 0.00 0.00 0.00 4.16
81 82 2.215451 GATCCCATGCCCACACACCT 62.215 60.000 0.00 0.00 0.00 4.00
82 83 0.918799 ATCCCATGCCCACACACCTA 60.919 55.000 0.00 0.00 0.00 3.08
83 84 1.077501 CCCATGCCCACACACCTAG 60.078 63.158 0.00 0.00 0.00 3.02
84 85 1.750399 CCATGCCCACACACCTAGC 60.750 63.158 0.00 0.00 0.00 3.42
85 86 1.300963 CATGCCCACACACCTAGCT 59.699 57.895 0.00 0.00 0.00 3.32
86 87 0.541392 CATGCCCACACACCTAGCTA 59.459 55.000 0.00 0.00 0.00 3.32
87 88 0.833287 ATGCCCACACACCTAGCTAG 59.167 55.000 14.20 14.20 0.00 3.42
110 111 3.981308 GCTAGCCTTGCCAACGAA 58.019 55.556 2.29 0.00 0.00 3.85
111 112 1.796796 GCTAGCCTTGCCAACGAAG 59.203 57.895 2.29 0.00 0.00 3.79
112 113 1.648467 GCTAGCCTTGCCAACGAAGG 61.648 60.000 2.29 0.00 42.68 3.46
120 121 4.713946 CCAACGAAGGCTAGCCAA 57.286 55.556 34.70 0.00 38.92 4.52
121 122 2.941210 CCAACGAAGGCTAGCCAAA 58.059 52.632 34.70 0.00 38.92 3.28
122 123 1.463674 CCAACGAAGGCTAGCCAAAT 58.536 50.000 34.70 20.52 38.92 2.32
123 124 1.401905 CCAACGAAGGCTAGCCAAATC 59.598 52.381 34.70 25.77 38.92 2.17
124 125 1.062587 CAACGAAGGCTAGCCAAATCG 59.937 52.381 35.25 35.25 41.40 3.34
125 126 0.462047 ACGAAGGCTAGCCAAATCGG 60.462 55.000 37.36 26.92 40.60 4.18
134 135 3.889227 CCAAATCGGCTCGCTCAA 58.111 55.556 0.00 0.00 0.00 3.02
135 136 1.717937 CCAAATCGGCTCGCTCAAG 59.282 57.895 0.00 0.00 0.00 3.02
136 137 1.061570 CAAATCGGCTCGCTCAAGC 59.938 57.895 0.00 0.00 41.73 4.01
137 138 1.375908 AAATCGGCTCGCTCAAGCA 60.376 52.632 2.50 0.00 44.35 3.91
138 139 0.955428 AAATCGGCTCGCTCAAGCAA 60.955 50.000 2.50 0.00 44.35 3.91
139 140 0.955428 AATCGGCTCGCTCAAGCAAA 60.955 50.000 2.50 0.00 44.35 3.68
140 141 0.745845 ATCGGCTCGCTCAAGCAAAT 60.746 50.000 2.50 0.00 44.35 2.32
141 142 1.226211 CGGCTCGCTCAAGCAAATG 60.226 57.895 2.50 0.00 44.35 2.32
142 143 1.638388 CGGCTCGCTCAAGCAAATGA 61.638 55.000 2.50 0.00 44.35 2.57
144 145 0.098376 GCTCGCTCAAGCAAATGAGG 59.902 55.000 13.80 6.41 45.60 3.86
145 146 1.730501 CTCGCTCAAGCAAATGAGGA 58.269 50.000 13.80 9.36 45.60 3.71
146 147 2.079158 CTCGCTCAAGCAAATGAGGAA 58.921 47.619 13.80 0.00 45.60 3.36
147 148 2.485426 CTCGCTCAAGCAAATGAGGAAA 59.515 45.455 13.80 0.00 45.60 3.13
148 149 2.884012 TCGCTCAAGCAAATGAGGAAAA 59.116 40.909 13.80 0.00 45.60 2.29
149 150 3.317711 TCGCTCAAGCAAATGAGGAAAAA 59.682 39.130 13.80 0.00 45.60 1.94
150 151 3.671928 CGCTCAAGCAAATGAGGAAAAAG 59.328 43.478 13.80 0.00 45.60 2.27
151 152 3.431233 GCTCAAGCAAATGAGGAAAAAGC 59.569 43.478 13.80 0.00 45.60 3.51
152 153 4.798593 GCTCAAGCAAATGAGGAAAAAGCT 60.799 41.667 13.80 0.00 45.60 3.74
153 154 4.624015 TCAAGCAAATGAGGAAAAAGCTG 58.376 39.130 0.00 0.00 0.00 4.24
154 155 4.341806 TCAAGCAAATGAGGAAAAAGCTGA 59.658 37.500 0.00 0.00 0.00 4.26
155 156 4.942761 AGCAAATGAGGAAAAAGCTGAA 57.057 36.364 0.00 0.00 0.00 3.02
156 157 5.280654 AGCAAATGAGGAAAAAGCTGAAA 57.719 34.783 0.00 0.00 0.00 2.69
157 158 5.673514 AGCAAATGAGGAAAAAGCTGAAAA 58.326 33.333 0.00 0.00 0.00 2.29
158 159 5.525012 AGCAAATGAGGAAAAAGCTGAAAAC 59.475 36.000 0.00 0.00 0.00 2.43
159 160 5.525012 GCAAATGAGGAAAAAGCTGAAAACT 59.475 36.000 0.00 0.00 0.00 2.66
160 161 6.510638 GCAAATGAGGAAAAAGCTGAAAACTG 60.511 38.462 0.00 0.00 0.00 3.16
161 162 4.045636 TGAGGAAAAAGCTGAAAACTGC 57.954 40.909 0.00 0.00 0.00 4.40
162 163 3.446873 TGAGGAAAAAGCTGAAAACTGCA 59.553 39.130 0.00 0.00 0.00 4.41
163 164 4.047142 GAGGAAAAAGCTGAAAACTGCAG 58.953 43.478 13.48 13.48 36.47 4.41
164 165 3.126073 GGAAAAAGCTGAAAACTGCAGG 58.874 45.455 19.93 0.00 34.00 4.85
165 166 2.229675 AAAAGCTGAAAACTGCAGGC 57.770 45.000 19.93 10.53 34.00 4.85
166 167 1.113788 AAAGCTGAAAACTGCAGGCA 58.886 45.000 19.93 9.45 34.00 4.75
167 168 1.113788 AAGCTGAAAACTGCAGGCAA 58.886 45.000 19.93 0.00 34.00 4.52
168 169 0.386838 AGCTGAAAACTGCAGGCAAC 59.613 50.000 19.93 7.43 34.00 4.17
169 170 0.936297 GCTGAAAACTGCAGGCAACG 60.936 55.000 19.93 2.79 46.39 4.10
170 171 0.662619 CTGAAAACTGCAGGCAACGA 59.337 50.000 19.93 0.00 46.39 3.85
171 172 0.662619 TGAAAACTGCAGGCAACGAG 59.337 50.000 19.93 0.00 46.39 4.18
172 173 0.944386 GAAAACTGCAGGCAACGAGA 59.056 50.000 19.93 0.00 46.39 4.04
173 174 0.663153 AAAACTGCAGGCAACGAGAC 59.337 50.000 19.93 0.00 46.39 3.36
174 175 0.463654 AAACTGCAGGCAACGAGACA 60.464 50.000 19.93 0.00 46.39 3.41
175 176 0.463654 AACTGCAGGCAACGAGACAA 60.464 50.000 19.93 0.00 46.39 3.18
176 177 0.882042 ACTGCAGGCAACGAGACAAG 60.882 55.000 19.93 0.00 46.39 3.16
177 178 2.180131 CTGCAGGCAACGAGACAAGC 62.180 60.000 5.57 0.00 46.39 4.01
178 179 1.963338 GCAGGCAACGAGACAAGCT 60.963 57.895 0.00 0.00 46.39 3.74
179 180 1.864862 CAGGCAACGAGACAAGCTG 59.135 57.895 0.00 0.00 46.39 4.24
180 181 1.302033 AGGCAACGAGACAAGCTGG 60.302 57.895 0.00 0.00 46.39 4.85
181 182 2.558313 GCAACGAGACAAGCTGGC 59.442 61.111 0.00 0.00 0.00 4.85
182 183 2.970974 GCAACGAGACAAGCTGGCC 61.971 63.158 0.00 0.00 0.00 5.36
183 184 2.357517 AACGAGACAAGCTGGCCG 60.358 61.111 0.00 0.00 0.00 6.13
184 185 2.867855 AACGAGACAAGCTGGCCGA 61.868 57.895 0.00 0.00 0.00 5.54
185 186 2.507992 CGAGACAAGCTGGCCGAG 60.508 66.667 0.00 0.00 0.00 4.63
186 187 2.125350 GAGACAAGCTGGCCGAGG 60.125 66.667 0.00 0.00 0.00 4.63
187 188 2.604686 AGACAAGCTGGCCGAGGA 60.605 61.111 0.00 0.00 0.00 3.71
188 189 2.172483 GAGACAAGCTGGCCGAGGAA 62.172 60.000 0.00 0.00 0.00 3.36
189 190 2.032681 ACAAGCTGGCCGAGGAAC 59.967 61.111 0.00 0.00 0.00 3.62
190 191 2.747855 CAAGCTGGCCGAGGAACC 60.748 66.667 0.00 0.00 0.00 3.62
191 192 3.249189 AAGCTGGCCGAGGAACCA 61.249 61.111 0.00 0.00 0.00 3.67
192 193 2.829384 AAGCTGGCCGAGGAACCAA 61.829 57.895 0.00 0.00 34.96 3.67
193 194 2.282180 GCTGGCCGAGGAACCAAA 60.282 61.111 0.00 0.00 34.96 3.28
194 195 2.626780 GCTGGCCGAGGAACCAAAC 61.627 63.158 0.00 0.00 34.96 2.93
195 196 1.971695 CTGGCCGAGGAACCAAACC 60.972 63.158 0.00 0.00 34.96 3.27
196 197 2.675423 GGCCGAGGAACCAAACCC 60.675 66.667 0.00 0.00 0.00 4.11
197 198 2.434774 GCCGAGGAACCAAACCCT 59.565 61.111 0.00 0.00 35.02 4.34
198 199 1.674651 GCCGAGGAACCAAACCCTC 60.675 63.158 0.00 0.00 44.18 4.30
199 200 2.067197 CCGAGGAACCAAACCCTCT 58.933 57.895 0.00 0.00 45.16 3.69
200 201 0.321653 CCGAGGAACCAAACCCTCTG 60.322 60.000 0.00 0.00 45.16 3.35
201 202 0.955919 CGAGGAACCAAACCCTCTGC 60.956 60.000 0.00 0.00 45.16 4.26
202 203 0.402121 GAGGAACCAAACCCTCTGCT 59.598 55.000 0.00 0.00 44.23 4.24
203 204 0.853530 AGGAACCAAACCCTCTGCTT 59.146 50.000 0.00 0.00 0.00 3.91
204 205 1.217942 AGGAACCAAACCCTCTGCTTT 59.782 47.619 0.00 0.00 0.00 3.51
205 206 2.039418 GGAACCAAACCCTCTGCTTTT 58.961 47.619 0.00 0.00 0.00 2.27
206 207 2.434336 GGAACCAAACCCTCTGCTTTTT 59.566 45.455 0.00 0.00 0.00 1.94
207 208 3.457234 GAACCAAACCCTCTGCTTTTTG 58.543 45.455 0.00 0.00 0.00 2.44
208 209 1.138859 ACCAAACCCTCTGCTTTTTGC 59.861 47.619 0.00 0.00 43.25 3.68
209 210 1.413812 CCAAACCCTCTGCTTTTTGCT 59.586 47.619 0.00 0.00 43.37 3.91
210 211 2.158914 CCAAACCCTCTGCTTTTTGCTT 60.159 45.455 0.00 0.00 43.37 3.91
211 212 3.126073 CAAACCCTCTGCTTTTTGCTTC 58.874 45.455 0.00 0.00 43.37 3.86
212 213 0.954452 ACCCTCTGCTTTTTGCTTCG 59.046 50.000 0.00 0.00 43.37 3.79
213 214 0.387750 CCCTCTGCTTTTTGCTTCGC 60.388 55.000 0.00 0.00 43.37 4.70
214 215 0.727122 CCTCTGCTTTTTGCTTCGCG 60.727 55.000 0.00 0.00 43.37 5.87
215 216 0.235665 CTCTGCTTTTTGCTTCGCGA 59.764 50.000 3.71 3.71 43.37 5.87
216 217 0.235665 TCTGCTTTTTGCTTCGCGAG 59.764 50.000 9.59 4.97 43.37 5.03
217 218 0.727122 CTGCTTTTTGCTTCGCGAGG 60.727 55.000 14.69 14.69 43.37 4.63
218 219 1.442688 GCTTTTTGCTTCGCGAGGG 60.443 57.895 20.46 13.07 38.95 4.30
219 220 1.442688 CTTTTTGCTTCGCGAGGGC 60.443 57.895 20.46 21.95 0.00 5.19
220 221 2.128853 CTTTTTGCTTCGCGAGGGCA 62.129 55.000 26.72 26.72 39.92 5.36
221 222 1.729470 TTTTTGCTTCGCGAGGGCAA 61.729 50.000 32.27 32.27 43.82 4.52
222 223 2.128853 TTTTGCTTCGCGAGGGCAAG 62.129 55.000 33.00 20.98 45.11 4.01
236 237 2.985282 CAAGCGCTTGCCCAGGAA 60.985 61.111 34.84 0.00 40.41 3.36
237 238 2.985847 AAGCGCTTGCCCAGGAAC 60.986 61.111 24.40 0.00 40.41 3.62
240 241 2.597217 CGCTTGCCCAGGAACCAA 60.597 61.111 0.00 0.00 0.00 3.67
241 242 2.199652 CGCTTGCCCAGGAACCAAA 61.200 57.895 0.00 0.00 0.00 3.28
242 243 1.367471 GCTTGCCCAGGAACCAAAC 59.633 57.895 0.00 0.00 0.00 2.93
243 244 1.659794 CTTGCCCAGGAACCAAACG 59.340 57.895 0.00 0.00 0.00 3.60
244 245 1.076632 TTGCCCAGGAACCAAACGT 60.077 52.632 0.00 0.00 0.00 3.99
245 246 1.388065 TTGCCCAGGAACCAAACGTG 61.388 55.000 0.00 0.00 0.00 4.49
246 247 3.039134 CCCAGGAACCAAACGTGC 58.961 61.111 0.00 0.00 0.00 5.34
247 248 2.561037 CCCAGGAACCAAACGTGCC 61.561 63.158 0.00 0.00 41.28 5.01
248 249 2.561037 CCAGGAACCAAACGTGCCC 61.561 63.158 0.00 0.00 42.09 5.36
299 307 1.012486 GCACAAGAAGCATGCAAGCC 61.012 55.000 21.98 5.50 39.23 4.35
363 371 1.145759 CCTCACATGCGTACGCGAAT 61.146 55.000 32.65 20.28 45.51 3.34
503 516 4.081862 TCGGTGGAGACATTTTACTCGATT 60.082 41.667 0.00 0.00 46.14 3.34
831 854 4.510038 ACGTCAGACTTAACACCGTTAT 57.490 40.909 0.00 0.00 0.00 1.89
834 857 6.446318 ACGTCAGACTTAACACCGTTATTAA 58.554 36.000 0.00 0.00 0.00 1.40
935 959 8.409371 GGACCAAAATGGAAAGCAAAATTTAAA 58.591 29.630 2.85 0.00 40.96 1.52
957 981 5.435686 AAAAGGGCCAAATAAGGAATTCC 57.564 39.130 17.31 17.31 0.00 3.01
1026 1050 1.681780 GGATTTGGGATTCGTGGAGCA 60.682 52.381 0.00 0.00 0.00 4.26
1058 1082 2.363018 TCTCTCTGCCCTCCACCG 60.363 66.667 0.00 0.00 0.00 4.94
1213 1239 0.891373 CGAGCTCAAGGGTTCTCTGA 59.109 55.000 15.40 0.00 0.00 3.27
1283 1309 1.759299 CCAATGGTGCTGGGGGATG 60.759 63.158 0.00 0.00 0.00 3.51
1402 1428 5.189736 TCTTGTGTATACTGGATGCTTTCCT 59.810 40.000 4.17 0.00 45.68 3.36
1703 2131 5.470098 TGCTAGTGATGAAAACTTCTGGTTC 59.530 40.000 0.00 0.00 37.12 3.62
1770 2198 5.883180 ACTACCATATACTCCCTCTGTCTC 58.117 45.833 0.00 0.00 0.00 3.36
1771 2199 4.816048 ACCATATACTCCCTCTGTCTCA 57.184 45.455 0.00 0.00 0.00 3.27
1772 2200 5.144159 ACCATATACTCCCTCTGTCTCAA 57.856 43.478 0.00 0.00 0.00 3.02
1773 2201 5.529289 ACCATATACTCCCTCTGTCTCAAA 58.471 41.667 0.00 0.00 0.00 2.69
1774 2202 5.964477 ACCATATACTCCCTCTGTCTCAAAA 59.036 40.000 0.00 0.00 0.00 2.44
1775 2203 6.617371 ACCATATACTCCCTCTGTCTCAAAAT 59.383 38.462 0.00 0.00 0.00 1.82
1776 2204 7.789831 ACCATATACTCCCTCTGTCTCAAAATA 59.210 37.037 0.00 0.00 0.00 1.40
1777 2205 8.820831 CCATATACTCCCTCTGTCTCAAAATAT 58.179 37.037 0.00 0.00 0.00 1.28
1867 2295 7.743520 TTGCTTTCGAACGTTTTATTTTTCT 57.256 28.000 0.46 0.00 0.00 2.52
1899 2327 2.743183 GCATGGGACTAGATGGTGTGAC 60.743 54.545 0.00 0.00 0.00 3.67
1911 2339 3.686916 TGGTGTGACGTGGAATTCATA 57.313 42.857 7.93 0.00 0.00 2.15
2010 2438 7.006509 AGAATCCTTCAAGAAGACCATTGAAA 58.993 34.615 11.25 0.00 42.96 2.69
2104 2532 7.953158 TTACTGATCTTTCTTGTCACAAGAG 57.047 36.000 19.53 10.07 30.15 2.85
2213 2651 0.261991 TGCTTCGAGTATCCTCCCCT 59.738 55.000 0.00 0.00 33.93 4.79
2259 2697 2.008242 AGCTTGGCATTGGTTGGTTA 57.992 45.000 0.00 0.00 0.00 2.85
2363 2801 2.550606 TGTTCGAAGTGTGCCCAAATAC 59.449 45.455 0.00 0.00 0.00 1.89
2933 3375 5.551305 TTCAGGAGAAGATTGAACAGTCA 57.449 39.130 0.00 0.00 0.00 3.41
2986 3428 6.485984 CCTGTTATGAATGAAGGAGAAGATGG 59.514 42.308 0.00 0.00 0.00 3.51
3037 3479 7.872483 GGCTCTCAAATTGATGGAAAAAGTAAA 59.128 33.333 0.00 0.00 0.00 2.01
3120 3562 7.414222 AAATCAGTGCAAGAATATGGACATT 57.586 32.000 0.00 0.00 43.32 2.71
3160 3602 5.453281 TTAATTTCAATCATGCTTTGCGC 57.547 34.783 0.00 0.00 39.77 6.09
3259 3709 5.811399 TTCACACAAGACCTTACAAAGTG 57.189 39.130 0.00 0.00 0.00 3.16
3304 3755 2.548067 CCGTCTAGGCAACAAACTGTCT 60.548 50.000 0.00 0.00 41.41 3.41
3310 3761 4.423625 AGGCAACAAACTGTCTCTACTT 57.576 40.909 0.00 0.00 41.41 2.24
3333 3784 6.520021 TCTATCCAATTGATGAAGGGATGT 57.480 37.500 7.12 0.00 38.72 3.06
3512 3970 1.948145 CCAATCCATCTTCAGAGCTGC 59.052 52.381 0.00 0.00 0.00 5.25
3607 4065 0.464373 ATGTCCATCGCCACACATCC 60.464 55.000 0.00 0.00 0.00 3.51
3672 4130 7.988737 TGCCATGAATATGTAGAAAGAAACAG 58.011 34.615 0.00 0.00 32.21 3.16
3673 4131 7.611467 TGCCATGAATATGTAGAAAGAAACAGT 59.389 33.333 0.00 0.00 32.21 3.55
3682 4140 2.092429 AGAAAGAAACAGTGCTCCACCA 60.092 45.455 0.00 0.00 34.49 4.17
3882 4344 1.439228 CATCGTCATCACCGGCTCT 59.561 57.895 0.00 0.00 0.00 4.09
3933 4399 0.249911 GATCCGTCCCAAGGAATCCG 60.250 60.000 0.00 0.00 41.69 4.18
4005 4472 0.541863 CCTAGATCCGGCAACCAACT 59.458 55.000 0.00 0.00 0.00 3.16
4170 4644 1.153249 TGATCCGAACCAATCCGCC 60.153 57.895 0.00 0.00 0.00 6.13
4294 4768 1.210478 CCGGGATCCAGACAGAACATT 59.790 52.381 15.23 0.00 0.00 2.71
4369 4850 4.148825 GACCTCCGTCGCCATGCT 62.149 66.667 0.00 0.00 0.00 3.79
4397 4878 1.270907 ATCTGGGCGAGGATATCCAC 58.729 55.000 23.81 16.41 38.89 4.02
4571 5059 2.566529 CGCCACACAGCTAGACGA 59.433 61.111 0.00 0.00 0.00 4.20
5139 5627 3.379445 GACGCGAGGAGGGGTGAA 61.379 66.667 15.93 0.00 37.07 3.18
5140 5628 3.358076 GACGCGAGGAGGGGTGAAG 62.358 68.421 15.93 0.00 37.07 3.02
5141 5629 4.148825 CGCGAGGAGGGGTGAAGG 62.149 72.222 0.00 0.00 0.00 3.46
5142 5630 4.475135 GCGAGGAGGGGTGAAGGC 62.475 72.222 0.00 0.00 0.00 4.35
5143 5631 4.148825 CGAGGAGGGGTGAAGGCG 62.149 72.222 0.00 0.00 0.00 5.52
5144 5632 4.475135 GAGGAGGGGTGAAGGCGC 62.475 72.222 0.00 0.00 0.00 6.53
5216 5704 4.845307 GGGGAAGGGGAGGAGGGG 62.845 77.778 0.00 0.00 0.00 4.79
5217 5705 4.845307 GGGAAGGGGAGGAGGGGG 62.845 77.778 0.00 0.00 0.00 5.40
5218 5706 3.707189 GGAAGGGGAGGAGGGGGA 61.707 72.222 0.00 0.00 0.00 4.81
5219 5707 2.367107 GAAGGGGAGGAGGGGGAC 60.367 72.222 0.00 0.00 0.00 4.46
5220 5708 4.416601 AAGGGGAGGAGGGGGACG 62.417 72.222 0.00 0.00 0.00 4.79
5224 5712 4.153330 GGAGGAGGGGGACGGCTA 62.153 72.222 0.00 0.00 0.00 3.93
5225 5713 2.522193 GAGGAGGGGGACGGCTAG 60.522 72.222 0.00 0.00 0.00 3.42
5226 5714 4.862823 AGGAGGGGGACGGCTAGC 62.863 72.222 6.04 6.04 0.00 3.42
5234 5722 4.577246 GACGGCTAGCGGCAGGAG 62.577 72.222 21.08 3.36 44.01 3.69
5237 5725 4.537433 GGCTAGCGGCAGGAGGTG 62.537 72.222 9.00 0.00 44.01 4.00
5238 5726 4.537433 GCTAGCGGCAGGAGGTGG 62.537 72.222 0.00 0.00 41.35 4.61
5301 5789 5.633182 GCGCAAGTTTCTTTTATCAATTCCA 59.367 36.000 0.30 0.00 41.68 3.53
5566 6055 8.057536 TGCTTTCTAGGTTTGAGTTGTTTTAA 57.942 30.769 0.00 0.00 0.00 1.52
5662 8359 2.450476 CCAGGGCTTCAAGTAATGCTT 58.550 47.619 0.00 0.00 38.08 3.91
5932 8629 4.697352 GTGCCTCTGATATGTTGAGTTTGT 59.303 41.667 0.00 0.00 0.00 2.83
6299 8997 8.710551 TGTGTAACGTTTATGGTACATTTGTAG 58.289 33.333 5.91 0.00 42.95 2.74
6619 9317 2.185350 CGACGGGCAATGAGAGCT 59.815 61.111 0.00 0.00 0.00 4.09
6726 9424 4.619227 CCACCGAACGCCACACCT 62.619 66.667 0.00 0.00 0.00 4.00
6770 9468 1.990060 ATAGTCACCGGGCAGCACT 60.990 57.895 6.32 2.18 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.530497 TTGTGCAACGCGACTGGTC 61.530 57.895 15.93 0.00 42.39 4.02
8 9 2.052237 GTTGTGCAACGCGACTGG 60.052 61.111 15.93 0.00 42.39 4.00
9 10 1.083401 GAGTTGTGCAACGCGACTG 60.083 57.895 15.93 11.17 45.50 3.51
10 11 3.319904 GAGTTGTGCAACGCGACT 58.680 55.556 15.93 2.84 45.50 4.18
14 15 1.132640 GGATCGAGTTGTGCAACGC 59.867 57.895 9.10 8.74 45.50 4.84
15 16 1.416049 CGGATCGAGTTGTGCAACG 59.584 57.895 9.10 0.00 45.50 4.10
16 17 1.132640 GCGGATCGAGTTGTGCAAC 59.867 57.895 6.94 6.94 41.45 4.17
17 18 2.379634 CGCGGATCGAGTTGTGCAA 61.380 57.895 0.00 0.00 41.67 4.08
18 19 2.809174 CGCGGATCGAGTTGTGCA 60.809 61.111 0.00 0.00 41.67 4.57
19 20 2.506217 TCGCGGATCGAGTTGTGC 60.506 61.111 6.13 0.00 43.16 4.57
42 43 4.988598 AACACGCCCTGAGTGCCG 62.989 66.667 0.00 0.00 42.94 5.69
43 44 2.594592 AAACACGCCCTGAGTGCC 60.595 61.111 0.00 0.00 42.94 5.01
44 45 2.639286 CAAACACGCCCTGAGTGC 59.361 61.111 0.00 0.00 42.94 4.40
45 46 0.606401 ATCCAAACACGCCCTGAGTG 60.606 55.000 0.00 0.00 44.57 3.51
46 47 0.321653 GATCCAAACACGCCCTGAGT 60.322 55.000 0.00 0.00 0.00 3.41
47 48 1.026718 GGATCCAAACACGCCCTGAG 61.027 60.000 6.95 0.00 0.00 3.35
48 49 1.002624 GGATCCAAACACGCCCTGA 60.003 57.895 6.95 0.00 0.00 3.86
49 50 2.046285 GGGATCCAAACACGCCCTG 61.046 63.158 15.23 0.00 35.86 4.45
50 51 1.863155 ATGGGATCCAAACACGCCCT 61.863 55.000 15.23 0.00 39.57 5.19
51 52 1.379843 ATGGGATCCAAACACGCCC 60.380 57.895 15.23 0.00 36.95 6.13
52 53 1.809207 CATGGGATCCAAACACGCC 59.191 57.895 15.23 0.00 36.95 5.68
53 54 1.139520 GCATGGGATCCAAACACGC 59.860 57.895 15.23 2.64 36.95 5.34
54 55 1.666209 GGGCATGGGATCCAAACACG 61.666 60.000 15.23 0.00 36.95 4.49
55 56 0.614415 TGGGCATGGGATCCAAACAC 60.614 55.000 15.23 0.35 36.95 3.32
56 57 0.614415 GTGGGCATGGGATCCAAACA 60.614 55.000 15.23 2.44 36.95 2.83
57 58 0.614415 TGTGGGCATGGGATCCAAAC 60.614 55.000 15.23 0.00 36.95 2.93
58 59 0.614415 GTGTGGGCATGGGATCCAAA 60.614 55.000 15.23 0.68 36.95 3.28
59 60 1.000233 GTGTGGGCATGGGATCCAA 60.000 57.895 15.23 1.27 36.95 3.53
60 61 2.237229 TGTGTGGGCATGGGATCCA 61.237 57.895 15.23 0.00 38.19 3.41
61 62 1.754234 GTGTGTGGGCATGGGATCC 60.754 63.158 1.92 1.92 0.00 3.36
62 63 1.754234 GGTGTGTGGGCATGGGATC 60.754 63.158 0.00 0.00 0.00 3.36
63 64 0.918799 TAGGTGTGTGGGCATGGGAT 60.919 55.000 0.00 0.00 0.00 3.85
64 65 1.540118 TAGGTGTGTGGGCATGGGA 60.540 57.895 0.00 0.00 0.00 4.37
65 66 1.077501 CTAGGTGTGTGGGCATGGG 60.078 63.158 0.00 0.00 0.00 4.00
66 67 1.750399 GCTAGGTGTGTGGGCATGG 60.750 63.158 0.00 0.00 0.00 3.66
67 68 0.541392 TAGCTAGGTGTGTGGGCATG 59.459 55.000 4.27 0.00 0.00 4.06
68 69 0.833287 CTAGCTAGGTGTGTGGGCAT 59.167 55.000 13.32 0.00 0.00 4.40
69 70 1.264749 CCTAGCTAGGTGTGTGGGCA 61.265 60.000 28.90 0.00 38.69 5.36
70 71 1.522569 CCTAGCTAGGTGTGTGGGC 59.477 63.158 28.90 0.00 38.69 5.36
71 72 1.264749 TGCCTAGCTAGGTGTGTGGG 61.265 60.000 34.85 13.51 45.42 4.61
72 73 0.613260 TTGCCTAGCTAGGTGTGTGG 59.387 55.000 34.85 14.22 45.42 4.17
73 74 1.406069 CCTTGCCTAGCTAGGTGTGTG 60.406 57.143 34.85 21.61 44.24 3.82
74 75 0.905357 CCTTGCCTAGCTAGGTGTGT 59.095 55.000 34.85 0.00 44.24 3.72
75 76 3.768633 CCTTGCCTAGCTAGGTGTG 57.231 57.895 34.85 24.52 44.24 3.82
93 94 1.648467 CCTTCGTTGGCAAGGCTAGC 61.648 60.000 14.76 6.04 34.21 3.42
94 95 2.471255 CCTTCGTTGGCAAGGCTAG 58.529 57.895 14.76 13.20 34.21 3.42
95 96 4.713946 CCTTCGTTGGCAAGGCTA 57.286 55.556 14.76 4.97 34.21 3.93
103 104 1.401905 GATTTGGCTAGCCTTCGTTGG 59.598 52.381 33.07 0.00 36.94 3.77
104 105 1.062587 CGATTTGGCTAGCCTTCGTTG 59.937 52.381 33.07 16.44 36.94 4.10
105 106 1.369625 CGATTTGGCTAGCCTTCGTT 58.630 50.000 33.07 14.25 36.94 3.85
106 107 0.462047 CCGATTTGGCTAGCCTTCGT 60.462 55.000 32.61 20.63 34.43 3.85
107 108 2.311294 CCGATTTGGCTAGCCTTCG 58.689 57.895 33.07 31.59 36.94 3.79
117 118 1.717937 CTTGAGCGAGCCGATTTGG 59.282 57.895 0.00 0.00 42.50 3.28
118 119 1.061570 GCTTGAGCGAGCCGATTTG 59.938 57.895 0.00 0.00 36.66 2.32
119 120 0.955428 TTGCTTGAGCGAGCCGATTT 60.955 50.000 7.23 0.00 45.83 2.17
120 121 0.955428 TTTGCTTGAGCGAGCCGATT 60.955 50.000 7.23 0.00 45.83 3.34
121 122 0.745845 ATTTGCTTGAGCGAGCCGAT 60.746 50.000 7.23 0.00 45.83 4.18
122 123 1.375908 ATTTGCTTGAGCGAGCCGA 60.376 52.632 7.23 0.00 45.83 5.54
123 124 1.226211 CATTTGCTTGAGCGAGCCG 60.226 57.895 7.23 0.00 45.83 5.52
124 125 0.098376 CTCATTTGCTTGAGCGAGCC 59.902 55.000 7.23 0.00 45.83 4.70
125 126 0.098376 CCTCATTTGCTTGAGCGAGC 59.902 55.000 2.72 2.72 45.83 5.03
126 127 1.730501 TCCTCATTTGCTTGAGCGAG 58.269 50.000 6.42 0.00 45.83 5.03
127 128 2.183478 TTCCTCATTTGCTTGAGCGA 57.817 45.000 6.42 0.00 45.83 4.93
128 129 2.995466 TTTCCTCATTTGCTTGAGCG 57.005 45.000 6.42 0.00 45.83 5.03
129 130 3.431233 GCTTTTTCCTCATTTGCTTGAGC 59.569 43.478 0.00 0.00 41.50 4.26
130 131 4.684703 CAGCTTTTTCCTCATTTGCTTGAG 59.315 41.667 5.29 5.29 42.31 3.02
131 132 4.341806 TCAGCTTTTTCCTCATTTGCTTGA 59.658 37.500 0.00 0.00 0.00 3.02
132 133 4.624015 TCAGCTTTTTCCTCATTTGCTTG 58.376 39.130 0.00 0.00 0.00 4.01
133 134 4.942761 TCAGCTTTTTCCTCATTTGCTT 57.057 36.364 0.00 0.00 0.00 3.91
134 135 4.942761 TTCAGCTTTTTCCTCATTTGCT 57.057 36.364 0.00 0.00 0.00 3.91
135 136 5.525012 AGTTTTCAGCTTTTTCCTCATTTGC 59.475 36.000 0.00 0.00 0.00 3.68
136 137 6.510638 GCAGTTTTCAGCTTTTTCCTCATTTG 60.511 38.462 0.00 0.00 0.00 2.32
137 138 5.525012 GCAGTTTTCAGCTTTTTCCTCATTT 59.475 36.000 0.00 0.00 0.00 2.32
138 139 5.052481 GCAGTTTTCAGCTTTTTCCTCATT 58.948 37.500 0.00 0.00 0.00 2.57
139 140 4.099881 TGCAGTTTTCAGCTTTTTCCTCAT 59.900 37.500 0.00 0.00 33.40 2.90
140 141 3.446873 TGCAGTTTTCAGCTTTTTCCTCA 59.553 39.130 0.00 0.00 33.40 3.86
141 142 4.045636 TGCAGTTTTCAGCTTTTTCCTC 57.954 40.909 0.00 0.00 33.40 3.71
142 143 3.181472 CCTGCAGTTTTCAGCTTTTTCCT 60.181 43.478 13.81 0.00 33.40 3.36
143 144 3.126073 CCTGCAGTTTTCAGCTTTTTCC 58.874 45.455 13.81 0.00 33.40 3.13
144 145 2.541346 GCCTGCAGTTTTCAGCTTTTTC 59.459 45.455 13.81 0.00 33.40 2.29
145 146 2.093553 TGCCTGCAGTTTTCAGCTTTTT 60.094 40.909 13.81 0.00 33.40 1.94
146 147 1.481772 TGCCTGCAGTTTTCAGCTTTT 59.518 42.857 13.81 0.00 33.40 2.27
147 148 1.113788 TGCCTGCAGTTTTCAGCTTT 58.886 45.000 13.81 0.00 33.40 3.51
148 149 1.113788 TTGCCTGCAGTTTTCAGCTT 58.886 45.000 13.81 0.00 33.40 3.74
149 150 0.386838 GTTGCCTGCAGTTTTCAGCT 59.613 50.000 13.81 0.00 33.40 4.24
150 151 0.936297 CGTTGCCTGCAGTTTTCAGC 60.936 55.000 13.81 8.22 0.00 4.26
151 152 0.662619 TCGTTGCCTGCAGTTTTCAG 59.337 50.000 13.81 0.00 0.00 3.02
152 153 0.662619 CTCGTTGCCTGCAGTTTTCA 59.337 50.000 13.81 2.06 0.00 2.69
153 154 0.944386 TCTCGTTGCCTGCAGTTTTC 59.056 50.000 13.81 0.00 0.00 2.29
154 155 0.663153 GTCTCGTTGCCTGCAGTTTT 59.337 50.000 13.81 0.00 0.00 2.43
155 156 0.463654 TGTCTCGTTGCCTGCAGTTT 60.464 50.000 13.81 0.00 0.00 2.66
156 157 0.463654 TTGTCTCGTTGCCTGCAGTT 60.464 50.000 13.81 0.00 0.00 3.16
157 158 0.882042 CTTGTCTCGTTGCCTGCAGT 60.882 55.000 13.81 0.00 0.00 4.40
158 159 1.864862 CTTGTCTCGTTGCCTGCAG 59.135 57.895 6.78 6.78 0.00 4.41
159 160 2.253758 GCTTGTCTCGTTGCCTGCA 61.254 57.895 0.00 0.00 0.00 4.41
160 161 1.963338 AGCTTGTCTCGTTGCCTGC 60.963 57.895 0.00 0.00 0.00 4.85
161 162 1.572085 CCAGCTTGTCTCGTTGCCTG 61.572 60.000 0.00 0.00 0.00 4.85
162 163 1.302033 CCAGCTTGTCTCGTTGCCT 60.302 57.895 0.00 0.00 0.00 4.75
163 164 2.970974 GCCAGCTTGTCTCGTTGCC 61.971 63.158 0.00 0.00 0.00 4.52
164 165 2.558313 GCCAGCTTGTCTCGTTGC 59.442 61.111 0.00 0.00 0.00 4.17
165 166 2.671177 CGGCCAGCTTGTCTCGTTG 61.671 63.158 2.24 0.00 0.00 4.10
166 167 2.357517 CGGCCAGCTTGTCTCGTT 60.358 61.111 2.24 0.00 0.00 3.85
167 168 3.288308 CTCGGCCAGCTTGTCTCGT 62.288 63.158 2.24 0.00 0.00 4.18
168 169 2.507992 CTCGGCCAGCTTGTCTCG 60.508 66.667 2.24 0.00 0.00 4.04
169 170 2.125350 CCTCGGCCAGCTTGTCTC 60.125 66.667 2.24 0.00 0.00 3.36
170 171 2.217038 TTCCTCGGCCAGCTTGTCT 61.217 57.895 2.24 0.00 0.00 3.41
171 172 2.035442 GTTCCTCGGCCAGCTTGTC 61.035 63.158 2.24 0.00 0.00 3.18
172 173 2.032681 GTTCCTCGGCCAGCTTGT 59.967 61.111 2.24 0.00 0.00 3.16
173 174 2.747855 GGTTCCTCGGCCAGCTTG 60.748 66.667 2.24 0.00 0.00 4.01
174 175 2.351924 TTTGGTTCCTCGGCCAGCTT 62.352 55.000 2.24 0.00 36.00 3.74
175 176 2.829384 TTTGGTTCCTCGGCCAGCT 61.829 57.895 2.24 0.00 36.00 4.24
176 177 2.282180 TTTGGTTCCTCGGCCAGC 60.282 61.111 2.24 0.00 36.00 4.85
177 178 1.971695 GGTTTGGTTCCTCGGCCAG 60.972 63.158 2.24 0.00 36.00 4.85
178 179 2.114411 GGTTTGGTTCCTCGGCCA 59.886 61.111 2.24 0.00 0.00 5.36
179 180 2.675423 GGGTTTGGTTCCTCGGCC 60.675 66.667 0.00 0.00 0.00 6.13
180 181 1.674651 GAGGGTTTGGTTCCTCGGC 60.675 63.158 0.00 0.00 39.95 5.54
181 182 4.716003 GAGGGTTTGGTTCCTCGG 57.284 61.111 0.00 0.00 39.95 4.63
184 185 0.853530 AAGCAGAGGGTTTGGTTCCT 59.146 50.000 0.00 0.00 31.10 3.36
185 186 1.704641 AAAGCAGAGGGTTTGGTTCC 58.295 50.000 0.00 0.00 42.72 3.62
186 187 3.457234 CAAAAAGCAGAGGGTTTGGTTC 58.543 45.455 0.00 0.00 43.48 3.62
187 188 2.419990 GCAAAAAGCAGAGGGTTTGGTT 60.420 45.455 0.00 0.00 43.48 3.67
188 189 1.138859 GCAAAAAGCAGAGGGTTTGGT 59.861 47.619 0.00 0.00 43.48 3.67
189 190 1.869774 GCAAAAAGCAGAGGGTTTGG 58.130 50.000 0.00 0.00 43.48 3.28
219 220 2.985282 TTCCTGGGCAAGCGCTTG 60.985 61.111 39.20 39.20 43.14 4.01
220 221 2.985847 GTTCCTGGGCAAGCGCTT 60.986 61.111 18.98 18.98 38.60 4.68
223 224 2.199652 TTTGGTTCCTGGGCAAGCG 61.200 57.895 0.00 0.00 0.00 4.68
224 225 1.367471 GTTTGGTTCCTGGGCAAGC 59.633 57.895 0.00 0.00 0.00 4.01
225 226 1.106944 ACGTTTGGTTCCTGGGCAAG 61.107 55.000 0.00 0.00 0.00 4.01
226 227 1.076632 ACGTTTGGTTCCTGGGCAA 60.077 52.632 0.00 0.00 0.00 4.52
227 228 1.826054 CACGTTTGGTTCCTGGGCA 60.826 57.895 0.00 0.00 0.00 5.36
228 229 3.039134 CACGTTTGGTTCCTGGGC 58.961 61.111 0.00 0.00 0.00 5.36
229 230 2.561037 GGCACGTTTGGTTCCTGGG 61.561 63.158 0.00 0.00 0.00 4.45
230 231 2.561037 GGGCACGTTTGGTTCCTGG 61.561 63.158 0.00 0.00 31.90 4.45
231 232 2.561037 GGGGCACGTTTGGTTCCTG 61.561 63.158 0.00 0.00 31.90 3.86
232 233 2.203437 GGGGCACGTTTGGTTCCT 60.203 61.111 0.00 0.00 31.90 3.36
233 234 2.519780 TGGGGCACGTTTGGTTCC 60.520 61.111 0.00 0.00 0.00 3.62
234 235 1.388837 AACTGGGGCACGTTTGGTTC 61.389 55.000 0.00 0.00 0.00 3.62
235 236 1.380650 AACTGGGGCACGTTTGGTT 60.381 52.632 0.00 0.00 0.00 3.67
236 237 2.124693 CAACTGGGGCACGTTTGGT 61.125 57.895 0.00 0.00 0.00 3.67
237 238 2.727544 CAACTGGGGCACGTTTGG 59.272 61.111 0.00 0.00 0.00 3.28
238 239 2.027460 GCAACTGGGGCACGTTTG 59.973 61.111 0.00 0.00 0.00 2.93
239 240 2.123897 AGCAACTGGGGCACGTTT 60.124 55.556 0.00 0.00 0.00 3.60
240 241 2.594592 GAGCAACTGGGGCACGTT 60.595 61.111 0.00 0.00 0.00 3.99
241 242 3.872603 TGAGCAACTGGGGCACGT 61.873 61.111 0.00 0.00 0.00 4.49
242 243 3.357079 GTGAGCAACTGGGGCACG 61.357 66.667 0.00 0.00 0.00 5.34
243 244 3.357079 CGTGAGCAACTGGGGCAC 61.357 66.667 0.00 0.00 0.00 5.01
299 307 3.191162 TGTTCAGGCGAAATCAATCAAGG 59.809 43.478 0.00 0.00 31.43 3.61
363 371 6.864342 ACGATTAAGAGCTAGCTTTTACTGA 58.136 36.000 23.39 12.40 0.00 3.41
503 516 3.279116 GCACAAGCTCACGCCACA 61.279 61.111 0.00 0.00 37.91 4.17
792 815 7.010830 GTCTGACGTAAAAAGACACTTTTACCT 59.989 37.037 9.38 3.06 43.92 3.08
811 834 6.183360 GGTTAATAACGGTGTTAAGTCTGACG 60.183 42.308 2.29 0.00 0.00 4.35
831 854 4.710324 ACACTTCCGTCAGATTTGGTTAA 58.290 39.130 0.00 0.00 0.00 2.01
834 857 2.104111 TGACACTTCCGTCAGATTTGGT 59.896 45.455 0.00 0.00 40.94 3.67
935 959 5.100811 AGGAATTCCTTATTTGGCCCTTTT 58.899 37.500 21.89 0.00 46.09 2.27
957 981 3.679083 CGAGGGCTAGTTTAGTTTGGGAG 60.679 52.174 0.00 0.00 0.00 4.30
958 982 2.235402 CGAGGGCTAGTTTAGTTTGGGA 59.765 50.000 0.00 0.00 0.00 4.37
959 983 2.235402 TCGAGGGCTAGTTTAGTTTGGG 59.765 50.000 0.00 0.00 0.00 4.12
1213 1239 5.278808 GGATTAAAGGAAGAAAGCAAACGGT 60.279 40.000 0.00 0.00 0.00 4.83
1283 1309 4.327885 CGAGAGGAATGCGTAGGC 57.672 61.111 0.00 0.00 40.52 3.93
1402 1428 5.317733 ACAAAATGTCGTTCCTTCAAACA 57.682 34.783 0.00 0.00 0.00 2.83
1792 2220 5.696724 CCTCTGTCTCAAAATGTAAGACGTT 59.303 40.000 0.00 0.00 41.84 3.99
1797 2225 5.799213 ACTCCCTCTGTCTCAAAATGTAAG 58.201 41.667 0.00 0.00 0.00 2.34
1867 2295 7.093156 CCATCTAGTCCCATGCAATCTCTAATA 60.093 40.741 0.00 0.00 0.00 0.98
1899 2327 4.875544 ACCGAACAATATGAATTCCACG 57.124 40.909 2.27 0.00 0.00 4.94
2010 2438 5.712084 AGCATATCAATCAGCCTATCCAT 57.288 39.130 0.00 0.00 0.00 3.41
2104 2532 7.724061 TGAAATATAGGGAAAGGAATTGTAGCC 59.276 37.037 0.00 0.00 0.00 3.93
2179 2607 2.938451 CGAAGCACATATGAGCCAAAGA 59.062 45.455 19.79 0.00 31.86 2.52
2259 2697 9.726438 ACTTTAAGTAGCTAATCAAATGTCACT 57.274 29.630 0.00 0.00 0.00 3.41
2290 2728 8.021973 GCAAATTTGATAGCTCATAAGGATCTG 58.978 37.037 22.31 0.00 0.00 2.90
2330 2768 5.635280 CACACTTCGAACACTCTCAACATAT 59.365 40.000 0.00 0.00 0.00 1.78
2342 2780 1.686355 ATTTGGGCACACTTCGAACA 58.314 45.000 0.00 0.00 0.00 3.18
2363 2801 5.220416 GGCATACTAATAAAATCTAGCCGCG 60.220 44.000 0.00 0.00 0.00 6.46
2683 3121 3.393426 AACAAATGGGAGATGGATGCT 57.607 42.857 0.00 0.00 0.00 3.79
2707 3145 7.851228 TCTGCCAGTTCTTCATAATCTTTCTA 58.149 34.615 0.00 0.00 0.00 2.10
2933 3375 7.472334 AATAATTGCCTTCAGAACATCAGTT 57.528 32.000 0.00 0.00 41.64 3.16
2986 3428 0.394352 ATTTCTCGGTGGCCACATCC 60.394 55.000 35.78 19.22 0.00 3.51
3037 3479 7.390027 ACTGTATAGAACAAGAGATTTGTGCT 58.610 34.615 5.88 5.88 41.08 4.40
3096 3538 7.414222 AATGTCCATATTCTTGCACTGATTT 57.586 32.000 0.00 0.00 0.00 2.17
3259 3709 6.183360 GGTGGCTTCAGTCTTATTGTTGTATC 60.183 42.308 0.00 0.00 0.00 2.24
3304 3755 7.568738 TCCCTTCATCAATTGGATAGAAGTAGA 59.431 37.037 19.14 15.13 38.31 2.59
3310 3761 6.520021 ACATCCCTTCATCAATTGGATAGA 57.480 37.500 5.42 0.00 34.12 1.98
3333 3784 4.562767 TGGTATTAGGCCCAGACTATCAA 58.437 43.478 0.00 0.00 0.00 2.57
3512 3970 0.731417 GCAAGGTAGATGCAGCAGTG 59.269 55.000 4.07 0.00 43.29 3.66
3672 4130 0.823356 TGGCTTCTTTGGTGGAGCAC 60.823 55.000 0.00 0.00 0.00 4.40
3673 4131 0.106268 TTGGCTTCTTTGGTGGAGCA 60.106 50.000 0.00 0.00 0.00 4.26
3798 4257 0.033503 CCAACCCCACCCAATACTCC 60.034 60.000 0.00 0.00 0.00 3.85
3799 4258 0.033503 CCCAACCCCACCCAATACTC 60.034 60.000 0.00 0.00 0.00 2.59
3882 4344 1.078988 GGTATTCGGTCGTTGGCCA 60.079 57.895 0.00 0.00 0.00 5.36
3933 4399 3.660111 GTGCACAGGTTGTCGGGC 61.660 66.667 13.17 0.00 0.00 6.13
4120 4594 2.814604 CGCACGGGATCCATCTCA 59.185 61.111 15.23 0.00 0.00 3.27
4170 4644 0.101219 TCTGTGACGGCGATCTGATG 59.899 55.000 16.62 0.00 0.00 3.07
4340 4821 4.148825 GAGGTCGCAGTGGCCGAT 62.149 66.667 0.00 0.00 36.38 4.18
4374 4855 0.818296 ATATCCTCGCCCAGATACGC 59.182 55.000 0.00 0.00 0.00 4.42
4377 4858 2.457598 GTGGATATCCTCGCCCAGATA 58.542 52.381 22.35 0.00 36.82 1.98
4571 5059 4.457496 CGGCTGCAGATGGGTCGT 62.457 66.667 20.43 0.00 0.00 4.34
5199 5687 4.845307 CCCCTCCTCCCCTTCCCC 62.845 77.778 0.00 0.00 0.00 4.81
5200 5688 4.845307 CCCCCTCCTCCCCTTCCC 62.845 77.778 0.00 0.00 0.00 3.97
5201 5689 3.707189 TCCCCCTCCTCCCCTTCC 61.707 72.222 0.00 0.00 0.00 3.46
5202 5690 2.367107 GTCCCCCTCCTCCCCTTC 60.367 72.222 0.00 0.00 0.00 3.46
5203 5691 4.416601 CGTCCCCCTCCTCCCCTT 62.417 72.222 0.00 0.00 0.00 3.95
5207 5695 4.153330 TAGCCGTCCCCCTCCTCC 62.153 72.222 0.00 0.00 0.00 4.30
5208 5696 2.522193 CTAGCCGTCCCCCTCCTC 60.522 72.222 0.00 0.00 0.00 3.71
5209 5697 4.862823 GCTAGCCGTCCCCCTCCT 62.863 72.222 2.29 0.00 0.00 3.69
5217 5705 4.577246 CTCCTGCCGCTAGCCGTC 62.577 72.222 9.66 0.00 42.71 4.79
5220 5708 4.537433 CACCTCCTGCCGCTAGCC 62.537 72.222 9.66 0.00 42.71 3.93
5221 5709 4.537433 CCACCTCCTGCCGCTAGC 62.537 72.222 4.06 4.06 44.14 3.42
5222 5710 4.537433 GCCACCTCCTGCCGCTAG 62.537 72.222 0.00 0.00 0.00 3.42
5270 5758 4.736631 GAAACTTGCGCCCGCGTC 62.737 66.667 4.18 3.91 45.51 5.19
5272 5760 2.999363 AAAAGAAACTTGCGCCCGCG 62.999 55.000 4.18 4.36 45.51 6.46
5273 5761 0.039888 TAAAAGAAACTTGCGCCCGC 60.040 50.000 4.18 5.60 42.35 6.13
5274 5762 2.095466 TGATAAAAGAAACTTGCGCCCG 60.095 45.455 4.18 0.00 0.00 6.13
5275 5763 3.569250 TGATAAAAGAAACTTGCGCCC 57.431 42.857 4.18 0.00 0.00 6.13
5276 5764 5.062183 GGAATTGATAAAAGAAACTTGCGCC 59.938 40.000 4.18 0.00 0.00 6.53
5277 5765 5.633182 TGGAATTGATAAAAGAAACTTGCGC 59.367 36.000 0.00 0.00 0.00 6.09
5278 5766 7.636259 TTGGAATTGATAAAAGAAACTTGCG 57.364 32.000 0.00 0.00 0.00 4.85
5279 5767 9.868389 CTTTTGGAATTGATAAAAGAAACTTGC 57.132 29.630 10.59 0.00 41.55 4.01
5301 5789 7.054751 AGAAAGTAACTGCAGGTACTTCTTTT 58.945 34.615 42.47 32.08 34.60 2.27
5662 8359 5.476599 AGCATATAGTTGCAACACCTTTTGA 59.523 36.000 30.11 7.71 45.23 2.69
5910 8607 4.696877 CACAAACTCAACATATCAGAGGCA 59.303 41.667 0.00 0.00 33.76 4.75
5932 8629 1.177895 TTTTCGGGAGCTGCATTGCA 61.178 50.000 11.50 11.50 36.92 4.08
6869 9567 2.355209 GCTCAGTCTCTTTGGTTAGGGG 60.355 54.545 0.00 0.00 0.00 4.79
6937 9635 1.077357 AGGACCGAGCTCGTCTCAT 60.077 57.895 32.41 21.22 41.98 2.90
7017 9715 2.937959 GATCTCCTCTCCCGCCTGGT 62.938 65.000 0.00 0.00 34.77 4.00
7025 9723 1.460273 GCAGGACCGATCTCCTCTCC 61.460 65.000 0.49 0.00 38.77 3.71
7169 9870 2.048127 GCGGCTGGACTTCTTCGT 60.048 61.111 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.