Multiple sequence alignment - TraesCS1B01G187900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G187900 chr1B 100.000 3417 0 0 641 4057 336202986 336206402 0.000000e+00 6311.0
1 TraesCS1B01G187900 chr1B 100.000 195 0 0 1 195 336202346 336202540 1.070000e-95 361.0
2 TraesCS1B01G187900 chr1B 100.000 50 0 0 3727 3776 93178057 93178008 4.320000e-15 93.5
3 TraesCS1B01G187900 chr1B 96.364 55 1 1 3724 3777 443998876 443998822 5.590000e-14 89.8
4 TraesCS1B01G187900 chr1B 94.340 53 3 0 3631 3683 31943102 31943154 9.350000e-12 82.4
5 TraesCS1B01G187900 chr1A 92.528 2998 137 37 641 3606 301783768 301780826 0.000000e+00 4215.0
6 TraesCS1B01G187900 chr1A 94.898 196 8 2 1 195 301784086 301783892 5.090000e-79 305.0
7 TraesCS1B01G187900 chr1A 79.186 221 21 15 3284 3479 301780951 301780731 3.290000e-26 130.0
8 TraesCS1B01G187900 chr1A 98.077 52 1 0 3726 3777 62951472 62951421 1.550000e-14 91.6
9 TraesCS1B01G187900 chr1A 98.039 51 1 0 3727 3777 299261001 299260951 5.590000e-14 89.8
10 TraesCS1B01G187900 chr1A 95.918 49 1 1 3683 3730 1209575 1209527 1.210000e-10 78.7
11 TraesCS1B01G187900 chr1D 94.365 2733 91 27 644 3357 238076567 238073879 0.000000e+00 4135.0
12 TraesCS1B01G187900 chr1D 94.898 196 8 2 1 195 238076883 238076689 5.090000e-79 305.0
13 TraesCS1B01G187900 chr1D 85.714 175 17 4 3815 3984 238073385 238073214 1.160000e-40 178.0
14 TraesCS1B01G187900 chr1D 98.039 51 1 0 3727 3777 433947475 433947425 5.590000e-14 89.8
15 TraesCS1B01G187900 chr1D 97.297 37 0 1 3780 3815 238073640 238073604 1.220000e-05 62.1
16 TraesCS1B01G187900 chr2B 86.458 96 9 3 3630 3725 557353425 557353334 7.170000e-18 102.0
17 TraesCS1B01G187900 chr2B 100.000 51 0 0 3727 3777 168651444 168651494 1.200000e-15 95.3
18 TraesCS1B01G187900 chr2B 92.593 54 3 1 3684 3737 70880706 70880758 4.350000e-10 76.8
19 TraesCS1B01G187900 chr2B 95.349 43 2 0 3683 3725 590087206 590087164 7.280000e-08 69.4
20 TraesCS1B01G187900 chr5A 98.077 52 1 0 3726 3777 110661480 110661531 1.550000e-14 91.6
21 TraesCS1B01G187900 chr5B 83.810 105 5 4 3634 3731 65533654 65533555 5.590000e-14 89.8
22 TraesCS1B01G187900 chr5B 96.226 53 2 0 3631 3683 437905492 437905440 2.010000e-13 87.9
23 TraesCS1B01G187900 chr4A 94.737 57 3 0 3317 3373 708594416 708594472 5.590000e-14 89.8
24 TraesCS1B01G187900 chr3D 98.039 51 1 0 3727 3777 157363264 157363314 5.590000e-14 89.8
25 TraesCS1B01G187900 chr3D 97.872 47 1 0 3683 3729 26587755 26587709 9.350000e-12 82.4
26 TraesCS1B01G187900 chr3B 100.000 48 0 0 3727 3774 50952202 50952249 5.590000e-14 89.8
27 TraesCS1B01G187900 chr3B 94.340 53 3 0 3631 3683 424788639 424788587 9.350000e-12 82.4
28 TraesCS1B01G187900 chr3B 100.000 28 0 0 3631 3658 6047759 6047786 7.000000e-03 52.8
29 TraesCS1B01G187900 chr7B 94.340 53 3 0 3631 3683 713437649 713437701 9.350000e-12 82.4
30 TraesCS1B01G187900 chr6B 94.340 53 3 0 3631 3683 222886789 222886841 9.350000e-12 82.4
31 TraesCS1B01G187900 chr2D 94.340 53 3 0 3631 3683 419675579 419675527 9.350000e-12 82.4
32 TraesCS1B01G187900 chr7D 95.918 49 1 1 3683 3731 43122496 43122449 1.210000e-10 78.7
33 TraesCS1B01G187900 chr2A 95.918 49 1 1 3683 3730 611312119 611312071 1.210000e-10 78.7
34 TraesCS1B01G187900 chr6D 89.831 59 4 1 3667 3725 271605291 271605235 1.560000e-09 75.0
35 TraesCS1B01G187900 chr7A 89.286 56 4 1 3670 3725 396622833 396622886 7.280000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G187900 chr1B 336202346 336206402 4056 False 3336.000 6311 100.000000 1 4057 2 chr1B.!!$F2 4056
1 TraesCS1B01G187900 chr1A 301780731 301784086 3355 True 1550.000 4215 88.870667 1 3606 3 chr1A.!!$R4 3605
2 TraesCS1B01G187900 chr1D 238073214 238076883 3669 True 1170.025 4135 93.068500 1 3984 4 chr1D.!!$R2 3983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 856 0.737715 GATCTCAAGTGCGGCGACTT 60.738 55.0 12.98 14.71 36.58 3.01 F
1523 1526 0.463654 AGTGCTCTGTCAAACCGCAA 60.464 50.0 0.00 0.00 31.77 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 1700 0.324943 GTTACTTGCCTCAGAGCCCA 59.675 55.0 0.0 0.0 0.0 5.36 R
3451 3503 0.095417 GAAGCATCACTCGTTTCCGC 59.905 55.0 0.0 0.0 0.0 5.54 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 90 4.147322 CGCCGCCGTGTTGACATC 62.147 66.667 0.00 0.00 0.00 3.06
767 769 3.259123 ACCGTCCGTGTTAGGTTCTATTT 59.741 43.478 0.00 0.00 32.17 1.40
849 851 2.301577 ACTAAGATCTCAAGTGCGGC 57.698 50.000 9.32 0.00 0.00 6.53
853 855 1.153745 GATCTCAAGTGCGGCGACT 60.154 57.895 12.98 8.76 0.00 4.18
854 856 0.737715 GATCTCAAGTGCGGCGACTT 60.738 55.000 12.98 14.71 36.58 3.01
900 903 1.202818 AGAGTTGCAAGGAGGGACAAC 60.203 52.381 0.00 0.00 42.08 3.32
968 971 1.573108 AGAGAGGCGGATTTGAAGGA 58.427 50.000 0.00 0.00 0.00 3.36
1212 1215 1.064166 CACCTCAAGGGGAATCTGCAT 60.064 52.381 0.29 0.00 42.67 3.96
1391 1394 1.188863 GACTTTGCAGGGAATGGCAT 58.811 50.000 0.00 0.00 40.17 4.40
1468 1471 3.433343 TCATTCAGTGGTGCAAATGGAT 58.567 40.909 6.68 0.00 31.53 3.41
1523 1526 0.463654 AGTGCTCTGTCAAACCGCAA 60.464 50.000 0.00 0.00 31.77 4.85
1528 1531 2.666619 GCTCTGTCAAACCGCAATGAAG 60.667 50.000 0.00 0.00 0.00 3.02
1697 1700 2.462723 GGTAGGAGAAGAAGCCTCACT 58.537 52.381 0.00 0.00 35.73 3.41
1711 1714 1.834856 CTCACTGGGCTCTGAGGCAA 61.835 60.000 29.13 19.70 43.44 4.52
1963 1966 1.525175 TACTGGTTCCCCAACAGGTT 58.475 50.000 0.00 0.00 41.27 3.50
1981 1984 3.760684 AGGTTCCTCATGCAATCTTCAAC 59.239 43.478 0.00 0.00 0.00 3.18
2013 2016 2.102252 GTCCAGCAAGTCTATGAGGAGG 59.898 54.545 0.00 0.00 30.04 4.30
2176 2179 5.163693 GGGGTTAGTAATTCCAAACATCGTG 60.164 44.000 7.32 0.00 0.00 4.35
2178 2181 6.072342 GGGTTAGTAATTCCAAACATCGTGTT 60.072 38.462 0.00 0.00 43.41 3.32
2187 2191 4.272504 TCCAAACATCGTGTTGTCTTTCTC 59.727 41.667 4.51 0.00 40.14 2.87
2209 2213 2.760634 TCATGAAGGCAAAGCGAGTA 57.239 45.000 0.00 0.00 0.00 2.59
2220 2224 6.171213 AGGCAAAGCGAGTACTAATTACTTT 58.829 36.000 0.00 0.00 41.48 2.66
2221 2225 7.325694 AGGCAAAGCGAGTACTAATTACTTTA 58.674 34.615 0.00 0.00 41.48 1.85
2224 2228 8.654215 GCAAAGCGAGTACTAATTACTTTACTT 58.346 33.333 0.00 0.00 41.48 2.24
2262 2269 8.056407 ACAGAAAGAAAATACCATTAGGAAGC 57.944 34.615 0.00 0.00 38.69 3.86
2264 2271 8.401709 CAGAAAGAAAATACCATTAGGAAGCTC 58.598 37.037 0.00 0.00 38.69 4.09
2265 2272 8.332487 AGAAAGAAAATACCATTAGGAAGCTCT 58.668 33.333 0.00 0.00 38.69 4.09
2285 2292 6.828785 AGCTCTGGTCTTCAAAAAGTCTTTTA 59.171 34.615 10.94 0.00 32.85 1.52
2286 2293 7.503902 AGCTCTGGTCTTCAAAAAGTCTTTTAT 59.496 33.333 10.94 0.00 32.85 1.40
2287 2294 7.592903 GCTCTGGTCTTCAAAAAGTCTTTTATG 59.407 37.037 10.94 11.06 32.85 1.90
2288 2295 8.746052 TCTGGTCTTCAAAAAGTCTTTTATGA 57.254 30.769 10.94 12.85 32.85 2.15
2289 2296 8.840321 TCTGGTCTTCAAAAAGTCTTTTATGAG 58.160 33.333 10.94 8.92 32.85 2.90
2290 2297 8.519799 TGGTCTTCAAAAAGTCTTTTATGAGT 57.480 30.769 10.94 0.00 32.85 3.41
2291 2298 9.621629 TGGTCTTCAAAAAGTCTTTTATGAGTA 57.378 29.630 10.94 6.70 32.85 2.59
2292 2299 9.880064 GGTCTTCAAAAAGTCTTTTATGAGTAC 57.120 33.333 10.94 14.71 32.85 2.73
2299 2306 9.832445 AAAAAGTCTTTTATGAGTACAGAGACA 57.168 29.630 10.94 0.00 32.85 3.41
2300 2307 9.832445 AAAAGTCTTTTATGAGTACAGAGACAA 57.168 29.630 8.86 0.00 0.00 3.18
2301 2308 9.482627 AAAGTCTTTTATGAGTACAGAGACAAG 57.517 33.333 0.00 0.00 0.00 3.16
2302 2309 8.410673 AGTCTTTTATGAGTACAGAGACAAGA 57.589 34.615 0.00 0.00 0.00 3.02
2303 2310 9.030452 AGTCTTTTATGAGTACAGAGACAAGAT 57.970 33.333 0.00 0.00 0.00 2.40
2304 2311 9.296400 GTCTTTTATGAGTACAGAGACAAGATC 57.704 37.037 0.00 0.00 0.00 2.75
2431 2453 2.464157 GCCTTCAGCTGTGACTACTT 57.536 50.000 14.67 0.00 38.99 2.24
2447 2469 6.856426 GTGACTACTTGGCTAAACATGTTTTC 59.144 38.462 27.66 18.86 34.23 2.29
2448 2470 6.016610 TGACTACTTGGCTAAACATGTTTTCC 60.017 38.462 27.66 25.60 34.23 3.13
2450 2472 3.323691 ACTTGGCTAAACATGTTTTCCCC 59.676 43.478 27.66 22.76 34.23 4.81
2451 2473 2.252714 TGGCTAAACATGTTTTCCCCC 58.747 47.619 27.66 20.68 34.23 5.40
2530 2552 0.180642 ATGAGGTGCTGGCTGATCAG 59.819 55.000 18.84 18.84 37.79 2.90
2605 2627 6.753913 AAGAGCAGAATAATGTCCATCCTA 57.246 37.500 0.00 0.00 0.00 2.94
2752 2774 8.573035 GTGTGAATAAAATGGTCCTGAAAACTA 58.427 33.333 0.00 0.00 0.00 2.24
2776 2798 5.463061 AGATTTGTTTTTGCAGATGTTTCGG 59.537 36.000 0.00 0.00 0.00 4.30
2791 2813 2.450609 TTCGGTACAAGCTGAAGTCC 57.549 50.000 0.00 0.00 0.00 3.85
2911 2933 8.362464 AGGTATCATCAGTTACACTCTTACAA 57.638 34.615 0.00 0.00 0.00 2.41
2925 2947 2.367567 TCTTACAACGAGCTCCCTTTGT 59.632 45.455 20.69 20.69 36.23 2.83
2971 2993 3.407424 TGGATCTGAACTCACCACAAG 57.593 47.619 0.00 0.00 0.00 3.16
3271 3313 3.569701 CAGGTACAATCCAGCAAAACTGT 59.430 43.478 0.00 0.00 45.68 3.55
3277 3319 4.278419 ACAATCCAGCAAAACTGTTAGACC 59.722 41.667 0.00 0.00 45.68 3.85
3278 3320 3.569194 TCCAGCAAAACTGTTAGACCA 57.431 42.857 0.00 0.00 45.68 4.02
3321 3363 1.522668 TACATGTTGCACTGCTCACC 58.477 50.000 2.30 0.00 0.00 4.02
3391 3441 4.496673 GCTTGGTGTATTCGTGTTGTCAAA 60.497 41.667 0.00 0.00 0.00 2.69
3401 3451 2.258755 GTGTTGTCAAACTGGTTGTGC 58.741 47.619 5.20 0.98 38.47 4.57
3403 3453 2.495270 TGTTGTCAAACTGGTTGTGCAT 59.505 40.909 5.20 0.00 38.47 3.96
3408 3458 6.832520 TGTCAAACTGGTTGTGCATAATAT 57.167 33.333 5.20 0.00 38.47 1.28
3425 3475 9.134055 TGCATAATATTTGATGGTGATTTGAGA 57.866 29.630 0.00 0.00 0.00 3.27
3437 3489 5.244402 TGGTGATTTGAGAAGTGATTGCATT 59.756 36.000 0.00 0.00 0.00 3.56
3438 3490 6.161381 GGTGATTTGAGAAGTGATTGCATTT 58.839 36.000 0.00 0.00 0.00 2.32
3451 3503 5.977725 GTGATTGCATTTGAGATTGGATCAG 59.022 40.000 0.00 0.00 0.00 2.90
3480 3538 5.347342 ACGAGTGATGCTTCTTATCTGAAG 58.653 41.667 0.88 0.00 44.44 3.02
3484 3542 6.945218 AGTGATGCTTCTTATCTGAAGAGTT 58.055 36.000 8.25 0.00 44.40 3.01
3485 3543 8.072321 AGTGATGCTTCTTATCTGAAGAGTTA 57.928 34.615 8.25 0.00 44.40 2.24
3486 3544 8.535335 AGTGATGCTTCTTATCTGAAGAGTTAA 58.465 33.333 8.25 0.00 44.40 2.01
3576 3637 3.599343 ACACTATTTCTGAAGCATCGCA 58.401 40.909 0.00 0.00 0.00 5.10
3600 3661 5.358090 TGGTGTAATCGTGTTGTCAAACTA 58.642 37.500 0.00 0.00 37.19 2.24
3610 3671 5.290158 CGTGTTGTCAAACTACTTGTGTACT 59.710 40.000 0.00 0.00 37.19 2.73
3612 3673 7.514125 CGTGTTGTCAAACTACTTGTGTACTAC 60.514 40.741 0.00 0.00 37.19 2.73
3613 3674 7.490402 GTGTTGTCAAACTACTTGTGTACTACT 59.510 37.037 0.00 0.00 37.19 2.57
3614 3675 7.703621 TGTTGTCAAACTACTTGTGTACTACTC 59.296 37.037 0.00 0.00 37.19 2.59
3615 3676 6.742109 TGTCAAACTACTTGTGTACTACTCC 58.258 40.000 0.00 0.00 36.34 3.85
3616 3677 6.155136 GTCAAACTACTTGTGTACTACTCCC 58.845 44.000 0.00 0.00 36.34 4.30
3617 3678 6.015603 GTCAAACTACTTGTGTACTACTCCCT 60.016 42.308 0.00 0.00 36.34 4.20
3618 3679 6.208204 TCAAACTACTTGTGTACTACTCCCTC 59.792 42.308 0.00 0.00 36.34 4.30
3619 3680 4.598022 ACTACTTGTGTACTACTCCCTCC 58.402 47.826 0.00 0.00 0.00 4.30
3620 3681 2.444421 ACTTGTGTACTACTCCCTCCG 58.556 52.381 0.00 0.00 0.00 4.63
3621 3682 2.224967 ACTTGTGTACTACTCCCTCCGT 60.225 50.000 0.00 0.00 0.00 4.69
3622 3683 2.592102 TGTGTACTACTCCCTCCGTT 57.408 50.000 0.00 0.00 0.00 4.44
3623 3684 2.440409 TGTGTACTACTCCCTCCGTTC 58.560 52.381 0.00 0.00 0.00 3.95
3624 3685 2.040813 TGTGTACTACTCCCTCCGTTCT 59.959 50.000 0.00 0.00 0.00 3.01
3625 3686 3.264193 TGTGTACTACTCCCTCCGTTCTA 59.736 47.826 0.00 0.00 0.00 2.10
3626 3687 4.263462 TGTGTACTACTCCCTCCGTTCTAA 60.263 45.833 0.00 0.00 0.00 2.10
3627 3688 4.702131 GTGTACTACTCCCTCCGTTCTAAA 59.298 45.833 0.00 0.00 0.00 1.85
3628 3689 5.183904 GTGTACTACTCCCTCCGTTCTAAAA 59.816 44.000 0.00 0.00 0.00 1.52
3629 3690 5.954150 TGTACTACTCCCTCCGTTCTAAAAT 59.046 40.000 0.00 0.00 0.00 1.82
3630 3691 7.067494 GTGTACTACTCCCTCCGTTCTAAAATA 59.933 40.741 0.00 0.00 0.00 1.40
3631 3692 7.615365 TGTACTACTCCCTCCGTTCTAAAATAA 59.385 37.037 0.00 0.00 0.00 1.40
3632 3693 6.871844 ACTACTCCCTCCGTTCTAAAATAAC 58.128 40.000 0.00 0.00 0.00 1.89
3633 3694 6.666980 ACTACTCCCTCCGTTCTAAAATAACT 59.333 38.462 0.00 0.00 0.00 2.24
3634 3695 6.370186 ACTCCCTCCGTTCTAAAATAACTT 57.630 37.500 0.00 0.00 0.00 2.66
3635 3696 6.776744 ACTCCCTCCGTTCTAAAATAACTTT 58.223 36.000 0.00 0.00 0.00 2.66
3636 3697 6.653740 ACTCCCTCCGTTCTAAAATAACTTTG 59.346 38.462 0.00 0.00 0.00 2.77
3637 3698 6.536447 TCCCTCCGTTCTAAAATAACTTTGT 58.464 36.000 0.00 0.00 0.00 2.83
3638 3699 7.678837 TCCCTCCGTTCTAAAATAACTTTGTA 58.321 34.615 0.00 0.00 0.00 2.41
3639 3700 7.603784 TCCCTCCGTTCTAAAATAACTTTGTAC 59.396 37.037 0.00 0.00 0.00 2.90
3640 3701 7.605309 CCCTCCGTTCTAAAATAACTTTGTACT 59.395 37.037 0.00 0.00 0.00 2.73
3641 3702 9.643693 CCTCCGTTCTAAAATAACTTTGTACTA 57.356 33.333 0.00 0.00 0.00 1.82
3676 3737 9.657419 ACAAAATTGGATCATCTATTTTGGAAC 57.343 29.630 25.54 0.00 45.43 3.62
3677 3738 9.656040 CAAAATTGGATCATCTATTTTGGAACA 57.344 29.630 19.93 0.00 41.13 3.18
3678 3739 9.880157 AAAATTGGATCATCTATTTTGGAACAG 57.120 29.630 9.05 0.00 42.39 3.16
3679 3740 8.827832 AATTGGATCATCTATTTTGGAACAGA 57.172 30.769 0.00 0.00 42.39 3.41
3680 3741 7.870509 TTGGATCATCTATTTTGGAACAGAG 57.129 36.000 0.00 0.00 42.39 3.35
3681 3742 6.359804 TGGATCATCTATTTTGGAACAGAGG 58.640 40.000 0.00 0.00 42.39 3.69
3682 3743 5.767168 GGATCATCTATTTTGGAACAGAGGG 59.233 44.000 0.00 0.00 42.39 4.30
3683 3744 5.779241 TCATCTATTTTGGAACAGAGGGT 57.221 39.130 0.00 0.00 42.39 4.34
3684 3745 6.139679 TCATCTATTTTGGAACAGAGGGTT 57.860 37.500 0.00 0.00 42.39 4.11
3685 3746 7.265599 TCATCTATTTTGGAACAGAGGGTTA 57.734 36.000 0.00 0.00 42.39 2.85
3686 3747 7.695055 TCATCTATTTTGGAACAGAGGGTTAA 58.305 34.615 0.00 0.00 42.39 2.01
3687 3748 8.336235 TCATCTATTTTGGAACAGAGGGTTAAT 58.664 33.333 0.00 0.00 42.39 1.40
3688 3749 9.627123 CATCTATTTTGGAACAGAGGGTTAATA 57.373 33.333 0.00 0.00 42.39 0.98
3689 3750 9.628500 ATCTATTTTGGAACAGAGGGTTAATAC 57.372 33.333 0.00 0.00 42.39 1.89
3690 3751 8.607713 TCTATTTTGGAACAGAGGGTTAATACA 58.392 33.333 0.00 0.00 42.39 2.29
3691 3752 9.238368 CTATTTTGGAACAGAGGGTTAATACAA 57.762 33.333 0.00 0.00 42.39 2.41
3692 3753 7.899648 TTTTGGAACAGAGGGTTAATACAAA 57.100 32.000 0.00 0.00 42.39 2.83
3693 3754 7.519032 TTTGGAACAGAGGGTTAATACAAAG 57.481 36.000 0.00 0.00 42.39 2.77
3694 3755 6.195600 TGGAACAGAGGGTTAATACAAAGT 57.804 37.500 0.00 0.00 40.63 2.66
3695 3756 6.607019 TGGAACAGAGGGTTAATACAAAGTT 58.393 36.000 0.00 0.00 40.63 2.66
3696 3757 6.488683 TGGAACAGAGGGTTAATACAAAGTTG 59.511 38.462 0.00 0.00 40.63 3.16
3697 3758 6.072119 GGAACAGAGGGTTAATACAAAGTTGG 60.072 42.308 0.00 0.00 40.63 3.77
3698 3759 5.321927 ACAGAGGGTTAATACAAAGTTGGG 58.678 41.667 0.00 0.00 0.00 4.12
3699 3760 5.163023 ACAGAGGGTTAATACAAAGTTGGGT 60.163 40.000 0.00 0.00 0.00 4.51
3700 3761 5.414765 CAGAGGGTTAATACAAAGTTGGGTC 59.585 44.000 0.00 0.00 0.00 4.46
3701 3762 5.073965 AGAGGGTTAATACAAAGTTGGGTCA 59.926 40.000 0.00 0.00 0.00 4.02
3702 3763 5.899278 AGGGTTAATACAAAGTTGGGTCAT 58.101 37.500 0.00 0.00 0.00 3.06
3703 3764 5.949952 AGGGTTAATACAAAGTTGGGTCATC 59.050 40.000 0.00 0.00 0.00 2.92
3704 3765 5.949952 GGGTTAATACAAAGTTGGGTCATCT 59.050 40.000 0.00 0.00 0.00 2.90
3705 3766 7.037153 AGGGTTAATACAAAGTTGGGTCATCTA 60.037 37.037 0.00 0.00 0.00 1.98
3706 3767 7.778382 GGGTTAATACAAAGTTGGGTCATCTAT 59.222 37.037 0.00 0.00 0.00 1.98
3707 3768 9.185680 GGTTAATACAAAGTTGGGTCATCTATT 57.814 33.333 0.00 0.00 0.00 1.73
3713 3774 8.934023 ACAAAGTTGGGTCATCTATTTTAGAA 57.066 30.769 0.00 0.00 38.50 2.10
3714 3775 8.793592 ACAAAGTTGGGTCATCTATTTTAGAAC 58.206 33.333 0.00 0.00 38.50 3.01
3715 3776 7.611213 AAGTTGGGTCATCTATTTTAGAACG 57.389 36.000 0.00 0.00 38.50 3.95
3716 3777 6.113411 AGTTGGGTCATCTATTTTAGAACGG 58.887 40.000 0.00 0.00 38.50 4.44
3717 3778 5.943349 TGGGTCATCTATTTTAGAACGGA 57.057 39.130 0.00 0.00 38.50 4.69
3718 3779 5.914033 TGGGTCATCTATTTTAGAACGGAG 58.086 41.667 0.00 0.00 38.50 4.63
3719 3780 5.163343 TGGGTCATCTATTTTAGAACGGAGG 60.163 44.000 0.00 0.00 38.50 4.30
3720 3781 5.298347 GGTCATCTATTTTAGAACGGAGGG 58.702 45.833 0.00 0.00 38.50 4.30
3721 3782 5.070047 GGTCATCTATTTTAGAACGGAGGGA 59.930 44.000 0.00 0.00 38.50 4.20
3722 3783 6.217294 GTCATCTATTTTAGAACGGAGGGAG 58.783 44.000 0.00 0.00 38.50 4.30
3723 3784 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
3724 3785 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
3725 3786 7.562454 TCATCTATTTTAGAACGGAGGGAGTAA 59.438 37.037 0.00 0.00 38.50 2.24
3726 3787 7.909485 TCTATTTTAGAACGGAGGGAGTAAT 57.091 36.000 0.00 0.00 0.00 1.89
3727 3788 7.723324 TCTATTTTAGAACGGAGGGAGTAATG 58.277 38.462 0.00 0.00 0.00 1.90
3728 3789 5.750352 TTTTAGAACGGAGGGAGTAATGT 57.250 39.130 0.00 0.00 0.00 2.71
3729 3790 5.750352 TTTAGAACGGAGGGAGTAATGTT 57.250 39.130 0.00 0.00 0.00 2.71
3730 3791 3.611766 AGAACGGAGGGAGTAATGTTG 57.388 47.619 0.00 0.00 0.00 3.33
3731 3792 2.007608 GAACGGAGGGAGTAATGTTGC 58.992 52.381 0.00 0.00 0.00 4.17
3732 3793 0.981183 ACGGAGGGAGTAATGTTGCA 59.019 50.000 0.00 0.00 0.00 4.08
3733 3794 1.349688 ACGGAGGGAGTAATGTTGCAA 59.650 47.619 0.00 0.00 0.00 4.08
3734 3795 2.224670 ACGGAGGGAGTAATGTTGCAAA 60.225 45.455 0.00 0.00 0.00 3.68
3746 3807 2.844122 GTTGCAAACTCTTGTCCGTT 57.156 45.000 0.00 0.00 45.32 4.44
3747 3808 3.145212 GTTGCAAACTCTTGTCCGTTT 57.855 42.857 0.00 0.00 45.32 3.60
3748 3809 3.105937 GTTGCAAACTCTTGTCCGTTTC 58.894 45.455 0.00 0.00 45.32 2.78
3749 3810 1.673920 TGCAAACTCTTGTCCGTTTCC 59.326 47.619 0.00 0.00 34.79 3.13
3750 3811 1.947456 GCAAACTCTTGTCCGTTTCCT 59.053 47.619 0.00 0.00 34.79 3.36
3751 3812 2.357952 GCAAACTCTTGTCCGTTTCCTT 59.642 45.455 0.00 0.00 34.79 3.36
3752 3813 3.548214 GCAAACTCTTGTCCGTTTCCTTC 60.548 47.826 0.00 0.00 34.79 3.46
3753 3814 3.840124 AACTCTTGTCCGTTTCCTTCT 57.160 42.857 0.00 0.00 0.00 2.85
3754 3815 3.840124 ACTCTTGTCCGTTTCCTTCTT 57.160 42.857 0.00 0.00 0.00 2.52
3755 3816 4.950205 ACTCTTGTCCGTTTCCTTCTTA 57.050 40.909 0.00 0.00 0.00 2.10
3756 3817 5.286267 ACTCTTGTCCGTTTCCTTCTTAA 57.714 39.130 0.00 0.00 0.00 1.85
3757 3818 5.866207 ACTCTTGTCCGTTTCCTTCTTAAT 58.134 37.500 0.00 0.00 0.00 1.40
3758 3819 5.932883 ACTCTTGTCCGTTTCCTTCTTAATC 59.067 40.000 0.00 0.00 0.00 1.75
3759 3820 5.860611 TCTTGTCCGTTTCCTTCTTAATCA 58.139 37.500 0.00 0.00 0.00 2.57
3760 3821 6.292923 TCTTGTCCGTTTCCTTCTTAATCAA 58.707 36.000 0.00 0.00 0.00 2.57
3761 3822 6.940298 TCTTGTCCGTTTCCTTCTTAATCAAT 59.060 34.615 0.00 0.00 0.00 2.57
3762 3823 6.494893 TGTCCGTTTCCTTCTTAATCAATG 57.505 37.500 0.00 0.00 0.00 2.82
3763 3824 5.414454 TGTCCGTTTCCTTCTTAATCAATGG 59.586 40.000 0.00 0.00 0.00 3.16
3764 3825 5.646360 GTCCGTTTCCTTCTTAATCAATGGA 59.354 40.000 0.00 0.00 0.00 3.41
3765 3826 6.318900 GTCCGTTTCCTTCTTAATCAATGGAT 59.681 38.462 0.00 0.00 33.08 3.41
3766 3827 6.318648 TCCGTTTCCTTCTTAATCAATGGATG 59.681 38.462 0.00 0.00 32.92 3.51
3767 3828 6.318648 CCGTTTCCTTCTTAATCAATGGATGA 59.681 38.462 0.00 0.00 43.67 2.92
3768 3829 7.412853 CGTTTCCTTCTTAATCAATGGATGAG 58.587 38.462 0.00 0.00 42.53 2.90
3769 3830 7.467811 CGTTTCCTTCTTAATCAATGGATGAGG 60.468 40.741 0.00 0.00 42.53 3.86
3770 3831 5.380043 TCCTTCTTAATCAATGGATGAGGC 58.620 41.667 0.00 0.00 42.53 4.70
3771 3832 5.103982 TCCTTCTTAATCAATGGATGAGGCA 60.104 40.000 0.00 0.00 42.53 4.75
3772 3833 5.595542 CCTTCTTAATCAATGGATGAGGCAA 59.404 40.000 0.00 0.00 42.53 4.52
3773 3834 6.097270 CCTTCTTAATCAATGGATGAGGCAAA 59.903 38.462 0.00 0.00 42.53 3.68
3774 3835 6.704289 TCTTAATCAATGGATGAGGCAAAG 57.296 37.500 0.00 0.00 42.53 2.77
3775 3836 3.814005 AATCAATGGATGAGGCAAAGC 57.186 42.857 0.00 0.00 42.53 3.51
3776 3837 2.519771 TCAATGGATGAGGCAAAGCT 57.480 45.000 0.00 0.00 33.04 3.74
3777 3838 3.650281 TCAATGGATGAGGCAAAGCTA 57.350 42.857 0.00 0.00 33.04 3.32
3778 3839 3.548770 TCAATGGATGAGGCAAAGCTAG 58.451 45.455 0.00 0.00 33.04 3.42
3779 3840 3.054139 TCAATGGATGAGGCAAAGCTAGT 60.054 43.478 0.00 0.00 33.04 2.57
3780 3841 2.408271 TGGATGAGGCAAAGCTAGTG 57.592 50.000 0.00 0.00 0.00 2.74
3781 3842 1.630369 TGGATGAGGCAAAGCTAGTGT 59.370 47.619 0.00 0.00 0.00 3.55
3782 3843 2.040278 TGGATGAGGCAAAGCTAGTGTT 59.960 45.455 0.00 0.00 0.00 3.32
3821 4103 7.218963 GTGATTTGAGGAATGATTTTTCTACGC 59.781 37.037 0.00 0.00 0.00 4.42
3824 4106 6.757897 TGAGGAATGATTTTTCTACGCAAT 57.242 33.333 0.00 0.00 0.00 3.56
3852 4134 4.187056 GCGCTAGCGAAAGAGGTT 57.813 55.556 39.52 0.00 42.83 3.50
3860 4142 4.036971 GCTAGCGAAAGAGGTTGAGAGATA 59.963 45.833 0.00 0.00 0.00 1.98
3866 4148 6.390721 CGAAAGAGGTTGAGAGATAGAACAA 58.609 40.000 0.00 0.00 0.00 2.83
3879 4166 5.285651 AGATAGAACAATCTCTTAGCGCAC 58.714 41.667 11.47 0.00 37.10 5.34
3890 4177 2.995939 TCTTAGCGCACTGATCTGTTTG 59.004 45.455 11.47 0.00 0.00 2.93
3899 4186 4.629200 GCACTGATCTGTTTGGAGAAGTAG 59.371 45.833 1.95 0.00 0.00 2.57
3901 4188 6.572509 GCACTGATCTGTTTGGAGAAGTAGTA 60.573 42.308 1.95 0.00 0.00 1.82
3902 4189 7.032580 CACTGATCTGTTTGGAGAAGTAGTAG 58.967 42.308 1.95 0.00 0.00 2.57
3903 4190 6.722129 ACTGATCTGTTTGGAGAAGTAGTAGT 59.278 38.462 0.00 0.00 0.00 2.73
3904 4191 7.889073 ACTGATCTGTTTGGAGAAGTAGTAGTA 59.111 37.037 0.00 0.00 0.00 1.82
3912 4199 9.074443 GTTTGGAGAAGTAGTAGTAATTTCTCG 57.926 37.037 18.07 0.00 42.80 4.04
3913 4200 7.934855 TGGAGAAGTAGTAGTAATTTCTCGT 57.065 36.000 18.07 0.00 42.80 4.18
3942 4229 4.569761 TCGTAAGCATATGTGGAGAGAC 57.430 45.455 4.29 0.00 37.18 3.36
3971 4258 3.738982 TGAAATGAGGTTTCTCGCTTCA 58.261 40.909 2.67 0.00 45.22 3.02
3978 4265 4.398044 TGAGGTTTCTCGCTTCAAACTTTT 59.602 37.500 0.00 0.00 42.79 2.27
3980 4267 4.398044 AGGTTTCTCGCTTCAAACTTTTCA 59.602 37.500 0.00 0.00 33.70 2.69
3984 4271 5.811399 TCTCGCTTCAAACTTTTCAAAGA 57.189 34.783 6.29 0.00 39.31 2.52
3985 4272 6.189677 TCTCGCTTCAAACTTTTCAAAGAA 57.810 33.333 6.29 0.00 39.31 2.52
3986 4273 6.616947 TCTCGCTTCAAACTTTTCAAAGAAA 58.383 32.000 6.29 0.00 39.31 2.52
3987 4274 7.087639 TCTCGCTTCAAACTTTTCAAAGAAAA 58.912 30.769 6.29 5.00 39.31 2.29
3988 4275 7.596995 TCTCGCTTCAAACTTTTCAAAGAAAAA 59.403 29.630 6.29 0.00 39.31 1.94
3989 4276 8.250538 TCGCTTCAAACTTTTCAAAGAAAAAT 57.749 26.923 6.29 0.00 39.31 1.82
3990 4277 8.379902 TCGCTTCAAACTTTTCAAAGAAAAATC 58.620 29.630 6.29 0.00 39.31 2.17
3991 4278 7.635973 CGCTTCAAACTTTTCAAAGAAAAATCC 59.364 33.333 6.29 0.00 39.31 3.01
3992 4279 8.450180 GCTTCAAACTTTTCAAAGAAAAATCCA 58.550 29.630 6.29 0.00 39.31 3.41
3993 4280 9.977762 CTTCAAACTTTTCAAAGAAAAATCCAG 57.022 29.630 6.29 0.00 39.31 3.86
3994 4281 9.717942 TTCAAACTTTTCAAAGAAAAATCCAGA 57.282 25.926 6.29 0.31 39.31 3.86
3995 4282 9.369904 TCAAACTTTTCAAAGAAAAATCCAGAG 57.630 29.630 6.29 0.00 39.31 3.35
3996 4283 8.606602 CAAACTTTTCAAAGAAAAATCCAGAGG 58.393 33.333 6.29 0.00 39.31 3.69
3997 4284 6.820335 ACTTTTCAAAGAAAAATCCAGAGGG 58.180 36.000 6.29 0.00 39.31 4.30
3998 4285 6.611236 ACTTTTCAAAGAAAAATCCAGAGGGA 59.389 34.615 6.29 0.00 42.52 4.20
3999 4286 7.125659 ACTTTTCAAAGAAAAATCCAGAGGGAA 59.874 33.333 6.29 0.00 42.04 3.97
4000 4287 7.986889 CTTTTCAAAGAAAAATCCAGAGGGAAA 59.013 33.333 6.41 0.00 41.76 3.13
4006 4293 4.330056 TCCAGAGGGAAACAGGCA 57.670 55.556 0.00 0.00 41.32 4.75
4007 4294 2.550787 TCCAGAGGGAAACAGGCAA 58.449 52.632 0.00 0.00 41.32 4.52
4008 4295 0.850100 TCCAGAGGGAAACAGGCAAA 59.150 50.000 0.00 0.00 41.32 3.68
4009 4296 1.216678 TCCAGAGGGAAACAGGCAAAA 59.783 47.619 0.00 0.00 41.32 2.44
4010 4297 1.615392 CCAGAGGGAAACAGGCAAAAG 59.385 52.381 0.00 0.00 35.59 2.27
4011 4298 2.586425 CAGAGGGAAACAGGCAAAAGA 58.414 47.619 0.00 0.00 0.00 2.52
4012 4299 2.555757 CAGAGGGAAACAGGCAAAAGAG 59.444 50.000 0.00 0.00 0.00 2.85
4013 4300 2.443255 AGAGGGAAACAGGCAAAAGAGA 59.557 45.455 0.00 0.00 0.00 3.10
4014 4301 2.554462 GAGGGAAACAGGCAAAAGAGAC 59.446 50.000 0.00 0.00 0.00 3.36
4015 4302 2.091885 AGGGAAACAGGCAAAAGAGACA 60.092 45.455 0.00 0.00 0.00 3.41
4016 4303 2.294512 GGGAAACAGGCAAAAGAGACAG 59.705 50.000 0.00 0.00 0.00 3.51
4017 4304 3.214328 GGAAACAGGCAAAAGAGACAGA 58.786 45.455 0.00 0.00 0.00 3.41
4018 4305 3.251972 GGAAACAGGCAAAAGAGACAGAG 59.748 47.826 0.00 0.00 0.00 3.35
4019 4306 2.557920 ACAGGCAAAAGAGACAGAGG 57.442 50.000 0.00 0.00 0.00 3.69
4020 4307 2.050144 ACAGGCAAAAGAGACAGAGGA 58.950 47.619 0.00 0.00 0.00 3.71
4021 4308 2.439507 ACAGGCAAAAGAGACAGAGGAA 59.560 45.455 0.00 0.00 0.00 3.36
4022 4309 3.117888 ACAGGCAAAAGAGACAGAGGAAA 60.118 43.478 0.00 0.00 0.00 3.13
4023 4310 3.885297 CAGGCAAAAGAGACAGAGGAAAA 59.115 43.478 0.00 0.00 0.00 2.29
4024 4311 3.885901 AGGCAAAAGAGACAGAGGAAAAC 59.114 43.478 0.00 0.00 0.00 2.43
4025 4312 3.632145 GGCAAAAGAGACAGAGGAAAACA 59.368 43.478 0.00 0.00 0.00 2.83
4026 4313 4.097892 GGCAAAAGAGACAGAGGAAAACAA 59.902 41.667 0.00 0.00 0.00 2.83
4027 4314 5.277047 GCAAAAGAGACAGAGGAAAACAAG 58.723 41.667 0.00 0.00 0.00 3.16
4028 4315 5.066505 GCAAAAGAGACAGAGGAAAACAAGA 59.933 40.000 0.00 0.00 0.00 3.02
4029 4316 6.404734 GCAAAAGAGACAGAGGAAAACAAGAA 60.405 38.462 0.00 0.00 0.00 2.52
4030 4317 6.685527 AAAGAGACAGAGGAAAACAAGAAC 57.314 37.500 0.00 0.00 0.00 3.01
4031 4318 5.359194 AGAGACAGAGGAAAACAAGAACA 57.641 39.130 0.00 0.00 0.00 3.18
4032 4319 5.745227 AGAGACAGAGGAAAACAAGAACAA 58.255 37.500 0.00 0.00 0.00 2.83
4033 4320 6.180472 AGAGACAGAGGAAAACAAGAACAAA 58.820 36.000 0.00 0.00 0.00 2.83
4034 4321 6.659242 AGAGACAGAGGAAAACAAGAACAAAA 59.341 34.615 0.00 0.00 0.00 2.44
4035 4322 6.856895 AGACAGAGGAAAACAAGAACAAAAG 58.143 36.000 0.00 0.00 0.00 2.27
4036 4323 5.965922 ACAGAGGAAAACAAGAACAAAAGG 58.034 37.500 0.00 0.00 0.00 3.11
4037 4324 4.805719 CAGAGGAAAACAAGAACAAAAGGC 59.194 41.667 0.00 0.00 0.00 4.35
4038 4325 4.119862 GAGGAAAACAAGAACAAAAGGCC 58.880 43.478 0.00 0.00 0.00 5.19
4039 4326 2.863740 GGAAAACAAGAACAAAAGGCCG 59.136 45.455 0.00 0.00 0.00 6.13
4040 4327 2.595124 AAACAAGAACAAAAGGCCGG 57.405 45.000 0.00 0.00 0.00 6.13
4041 4328 0.104120 AACAAGAACAAAAGGCCGGC 59.896 50.000 21.18 21.18 0.00 6.13
4042 4329 1.371635 CAAGAACAAAAGGCCGGCG 60.372 57.895 22.54 8.77 0.00 6.46
4043 4330 1.527380 AAGAACAAAAGGCCGGCGA 60.527 52.632 22.54 0.00 0.00 5.54
4044 4331 1.515521 AAGAACAAAAGGCCGGCGAG 61.516 55.000 22.54 10.48 0.00 5.03
4045 4332 2.978018 GAACAAAAGGCCGGCGAGG 61.978 63.158 22.54 10.50 44.97 4.63
4046 4333 3.785122 AACAAAAGGCCGGCGAGGT 62.785 57.895 22.54 11.20 43.70 3.85
4047 4334 2.983592 CAAAAGGCCGGCGAGGTT 60.984 61.111 22.54 8.98 43.70 3.50
4048 4335 2.983592 AAAAGGCCGGCGAGGTTG 60.984 61.111 22.54 0.00 43.70 3.77
4055 4342 2.509336 CGGCGAGGTTGCTGGTAG 60.509 66.667 0.00 0.00 37.59 3.18
4056 4343 2.663196 GGCGAGGTTGCTGGTAGT 59.337 61.111 0.00 0.00 34.52 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
767 769 5.628130 AGAGACTGTAACTGGTAGTACACA 58.372 41.667 2.06 0.00 0.00 3.72
900 903 1.490574 CAAGACTACCTCCTCCCTGG 58.509 60.000 0.00 0.00 37.10 4.45
968 971 1.046472 TCGAGTCACCACCACCAGTT 61.046 55.000 0.00 0.00 0.00 3.16
1391 1394 3.390967 TCTCAACCTTGATGTCACCTCAA 59.609 43.478 0.00 0.00 36.46 3.02
1468 1471 4.141846 GGCAGAAGATCTACCATTCAGACA 60.142 45.833 0.00 0.00 30.09 3.41
1523 1526 2.203070 GCGGACCATCGGCTTCAT 60.203 61.111 1.48 0.00 39.30 2.57
1528 1531 0.814010 ATAACAAGCGGACCATCGGC 60.814 55.000 0.44 0.44 42.20 5.54
1697 1700 0.324943 GTTACTTGCCTCAGAGCCCA 59.675 55.000 0.00 0.00 0.00 5.36
1711 1714 9.520515 AAAACCAGATTGTTCATAGATGTTACT 57.479 29.630 0.00 0.00 0.00 2.24
1963 1966 4.259356 CTGAGTTGAAGATTGCATGAGGA 58.741 43.478 0.00 0.00 0.00 3.71
1981 1984 2.045536 GCTGGACAAGGGGCTGAG 60.046 66.667 0.00 0.00 0.00 3.35
2176 2179 5.009010 TGCCTTCATGAAAGAGAAAGACAAC 59.991 40.000 9.88 0.00 37.12 3.32
2178 2181 4.717877 TGCCTTCATGAAAGAGAAAGACA 58.282 39.130 9.88 0.00 37.12 3.41
2187 2191 2.227388 ACTCGCTTTGCCTTCATGAAAG 59.773 45.455 9.88 4.49 34.52 2.62
2262 2269 8.840321 TCATAAAAGACTTTTTGAAGACCAGAG 58.160 33.333 17.92 0.00 37.12 3.35
2264 2271 8.624776 ACTCATAAAAGACTTTTTGAAGACCAG 58.375 33.333 17.92 10.41 37.12 4.00
2265 2272 8.519799 ACTCATAAAAGACTTTTTGAAGACCA 57.480 30.769 17.92 0.00 37.12 4.02
2285 2292 5.954752 TCCAAGATCTTGTCTCTGTACTCAT 59.045 40.000 29.03 0.00 38.85 2.90
2286 2293 5.325239 TCCAAGATCTTGTCTCTGTACTCA 58.675 41.667 29.03 0.00 38.85 3.41
2287 2294 5.906113 TCCAAGATCTTGTCTCTGTACTC 57.094 43.478 29.03 0.00 38.85 2.59
2288 2295 5.777732 AGTTCCAAGATCTTGTCTCTGTACT 59.222 40.000 29.03 19.71 38.85 2.73
2289 2296 6.031751 AGTTCCAAGATCTTGTCTCTGTAC 57.968 41.667 29.03 18.15 38.85 2.90
2290 2297 6.127980 CGTAGTTCCAAGATCTTGTCTCTGTA 60.128 42.308 29.03 12.97 38.85 2.74
2291 2298 5.336055 CGTAGTTCCAAGATCTTGTCTCTGT 60.336 44.000 29.03 13.81 38.85 3.41
2292 2299 5.098893 CGTAGTTCCAAGATCTTGTCTCTG 58.901 45.833 29.03 16.22 38.85 3.35
2293 2300 4.767928 ACGTAGTTCCAAGATCTTGTCTCT 59.232 41.667 29.03 23.61 37.78 3.10
2294 2301 5.061920 ACGTAGTTCCAAGATCTTGTCTC 57.938 43.478 29.03 19.14 37.78 3.36
2429 2451 3.306710 GGGGGAAAACATGTTTAGCCAAG 60.307 47.826 29.44 0.00 32.23 3.61
2431 2453 2.252714 GGGGGAAAACATGTTTAGCCA 58.747 47.619 29.44 0.00 32.23 4.75
2450 2472 4.098501 GTGAAATAGATGAAAAGCCTGGGG 59.901 45.833 0.00 0.00 0.00 4.96
2451 2473 4.706476 TGTGAAATAGATGAAAAGCCTGGG 59.294 41.667 0.00 0.00 0.00 4.45
2530 2552 3.194116 TGCTCTTTCCCATCTTTGCAATC 59.806 43.478 0.00 0.00 0.00 2.67
2752 2774 5.463061 CCGAAACATCTGCAAAAACAAATCT 59.537 36.000 0.00 0.00 0.00 2.40
2758 2780 4.602995 TGTACCGAAACATCTGCAAAAAC 58.397 39.130 0.00 0.00 0.00 2.43
2776 2798 3.232213 TCGATGGACTTCAGCTTGTAC 57.768 47.619 0.00 0.00 0.00 2.90
2911 2933 0.179018 AGCAAACAAAGGGAGCTCGT 60.179 50.000 7.83 0.00 0.00 4.18
2925 2947 1.742831 ACTCGTCAGCAAAACAGCAAA 59.257 42.857 0.00 0.00 36.85 3.68
2971 2993 3.665745 ACAAAGGGAATGTGAATGTGC 57.334 42.857 0.00 0.00 0.00 4.57
3096 3118 1.156645 CGGCTCTGGCAGAATAGCAC 61.157 60.000 23.41 14.23 40.87 4.40
3097 3119 1.144716 CGGCTCTGGCAGAATAGCA 59.855 57.895 23.41 0.80 40.87 3.49
3098 3120 0.462759 AACGGCTCTGGCAGAATAGC 60.463 55.000 19.29 17.69 40.87 2.97
3271 3313 7.795534 TTATGGTTACTACAACCTGGTCTAA 57.204 36.000 0.00 0.00 40.88 2.10
3391 3441 6.380846 ACCATCAAATATTATGCACAACCAGT 59.619 34.615 0.00 0.00 0.00 4.00
3408 3458 7.372714 CAATCACTTCTCAAATCACCATCAAA 58.627 34.615 0.00 0.00 0.00 2.69
3425 3475 5.988310 TCCAATCTCAAATGCAATCACTT 57.012 34.783 0.00 0.00 0.00 3.16
3437 3489 3.009723 GTTTCCGCTGATCCAATCTCAA 58.990 45.455 0.00 0.00 0.00 3.02
3438 3490 2.632377 GTTTCCGCTGATCCAATCTCA 58.368 47.619 0.00 0.00 0.00 3.27
3451 3503 0.095417 GAAGCATCACTCGTTTCCGC 59.905 55.000 0.00 0.00 0.00 5.54
3500 3560 1.441515 CGTGAGCAGTGCAACATGC 60.442 57.895 19.20 10.91 45.29 4.06
3540 3601 9.337396 CAGAAATAGTGTAGCCATTATAACCAA 57.663 33.333 0.00 0.00 0.00 3.67
3558 3619 3.562973 ACCATGCGATGCTTCAGAAATAG 59.437 43.478 0.08 0.00 0.00 1.73
3569 3630 0.937304 ACGATTACACCATGCGATGC 59.063 50.000 0.00 0.00 0.00 3.91
3576 3637 4.819630 AGTTTGACAACACGATTACACCAT 59.180 37.500 0.00 0.00 35.05 3.55
3600 3661 2.224967 ACGGAGGGAGTAGTACACAAGT 60.225 50.000 2.52 0.00 0.00 3.16
3610 3671 7.486407 AAGTTATTTTAGAACGGAGGGAGTA 57.514 36.000 0.00 0.00 31.85 2.59
3612 3673 6.653740 ACAAAGTTATTTTAGAACGGAGGGAG 59.346 38.462 0.00 0.00 31.85 4.30
3613 3674 6.536447 ACAAAGTTATTTTAGAACGGAGGGA 58.464 36.000 0.00 0.00 31.85 4.20
3614 3675 6.812879 ACAAAGTTATTTTAGAACGGAGGG 57.187 37.500 0.00 0.00 31.85 4.30
3615 3676 8.543862 AGTACAAAGTTATTTTAGAACGGAGG 57.456 34.615 0.00 0.00 31.85 4.30
3650 3711 9.657419 GTTCCAAAATAGATGATCCAATTTTGT 57.343 29.630 25.65 6.24 43.14 2.83
3651 3712 9.656040 TGTTCCAAAATAGATGATCCAATTTTG 57.344 29.630 23.35 23.35 43.77 2.44
3652 3713 9.880157 CTGTTCCAAAATAGATGATCCAATTTT 57.120 29.630 9.17 9.17 33.07 1.82
3653 3714 9.258629 TCTGTTCCAAAATAGATGATCCAATTT 57.741 29.630 0.00 0.00 28.72 1.82
3654 3715 8.827832 TCTGTTCCAAAATAGATGATCCAATT 57.172 30.769 0.00 0.00 28.72 2.32
3655 3716 7.504911 CCTCTGTTCCAAAATAGATGATCCAAT 59.495 37.037 0.00 0.00 32.88 3.16
3656 3717 6.830324 CCTCTGTTCCAAAATAGATGATCCAA 59.170 38.462 0.00 0.00 32.88 3.53
3657 3718 6.359804 CCTCTGTTCCAAAATAGATGATCCA 58.640 40.000 0.00 0.00 32.88 3.41
3658 3719 5.767168 CCCTCTGTTCCAAAATAGATGATCC 59.233 44.000 0.00 0.00 32.88 3.36
3659 3720 6.360618 ACCCTCTGTTCCAAAATAGATGATC 58.639 40.000 0.00 0.00 32.88 2.92
3660 3721 6.332976 ACCCTCTGTTCCAAAATAGATGAT 57.667 37.500 0.00 0.00 32.88 2.45
3661 3722 5.779241 ACCCTCTGTTCCAAAATAGATGA 57.221 39.130 0.00 0.00 32.88 2.92
3662 3723 7.938140 TTAACCCTCTGTTCCAAAATAGATG 57.062 36.000 0.00 0.00 38.42 2.90
3663 3724 9.628500 GTATTAACCCTCTGTTCCAAAATAGAT 57.372 33.333 0.00 0.00 38.42 1.98
3664 3725 8.607713 TGTATTAACCCTCTGTTCCAAAATAGA 58.392 33.333 0.00 0.00 38.42 1.98
3665 3726 8.801882 TGTATTAACCCTCTGTTCCAAAATAG 57.198 34.615 0.00 0.00 38.42 1.73
3666 3727 9.589461 TTTGTATTAACCCTCTGTTCCAAAATA 57.411 29.630 0.00 0.00 38.42 1.40
3667 3728 8.485578 TTTGTATTAACCCTCTGTTCCAAAAT 57.514 30.769 0.00 0.00 38.42 1.82
3668 3729 7.562088 ACTTTGTATTAACCCTCTGTTCCAAAA 59.438 33.333 0.00 0.00 38.42 2.44
3669 3730 7.064229 ACTTTGTATTAACCCTCTGTTCCAAA 58.936 34.615 0.00 0.00 38.42 3.28
3670 3731 6.607019 ACTTTGTATTAACCCTCTGTTCCAA 58.393 36.000 0.00 0.00 38.42 3.53
3671 3732 6.195600 ACTTTGTATTAACCCTCTGTTCCA 57.804 37.500 0.00 0.00 38.42 3.53
3672 3733 6.072119 CCAACTTTGTATTAACCCTCTGTTCC 60.072 42.308 0.00 0.00 38.42 3.62
3673 3734 6.072119 CCCAACTTTGTATTAACCCTCTGTTC 60.072 42.308 0.00 0.00 38.42 3.18
3674 3735 5.773176 CCCAACTTTGTATTAACCCTCTGTT 59.227 40.000 0.00 0.00 41.11 3.16
3675 3736 5.163023 ACCCAACTTTGTATTAACCCTCTGT 60.163 40.000 0.00 0.00 0.00 3.41
3676 3737 5.321927 ACCCAACTTTGTATTAACCCTCTG 58.678 41.667 0.00 0.00 0.00 3.35
3677 3738 5.073965 TGACCCAACTTTGTATTAACCCTCT 59.926 40.000 0.00 0.00 0.00 3.69
3678 3739 5.318630 TGACCCAACTTTGTATTAACCCTC 58.681 41.667 0.00 0.00 0.00 4.30
3679 3740 5.327737 TGACCCAACTTTGTATTAACCCT 57.672 39.130 0.00 0.00 0.00 4.34
3680 3741 5.949952 AGATGACCCAACTTTGTATTAACCC 59.050 40.000 0.00 0.00 0.00 4.11
3681 3742 8.747538 ATAGATGACCCAACTTTGTATTAACC 57.252 34.615 0.00 0.00 0.00 2.85
3688 3749 8.793592 GTTCTAAAATAGATGACCCAACTTTGT 58.206 33.333 0.00 0.00 34.22 2.83
3689 3750 7.962918 CGTTCTAAAATAGATGACCCAACTTTG 59.037 37.037 0.00 0.00 34.22 2.77
3690 3751 7.120726 CCGTTCTAAAATAGATGACCCAACTTT 59.879 37.037 0.00 0.00 34.22 2.66
3691 3752 6.598064 CCGTTCTAAAATAGATGACCCAACTT 59.402 38.462 0.00 0.00 34.22 2.66
3692 3753 6.070424 TCCGTTCTAAAATAGATGACCCAACT 60.070 38.462 0.00 0.00 34.22 3.16
3693 3754 6.110707 TCCGTTCTAAAATAGATGACCCAAC 58.889 40.000 0.00 0.00 34.22 3.77
3694 3755 6.302535 TCCGTTCTAAAATAGATGACCCAA 57.697 37.500 0.00 0.00 34.22 4.12
3695 3756 5.163343 CCTCCGTTCTAAAATAGATGACCCA 60.163 44.000 0.00 0.00 34.22 4.51
3696 3757 5.298347 CCTCCGTTCTAAAATAGATGACCC 58.702 45.833 0.00 0.00 34.22 4.46
3697 3758 5.070047 TCCCTCCGTTCTAAAATAGATGACC 59.930 44.000 0.00 0.00 34.22 4.02
3698 3759 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
3699 3760 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
3700 3761 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
3701 3762 7.909485 TTACTCCCTCCGTTCTAAAATAGAT 57.091 36.000 0.00 0.00 34.22 1.98
3702 3763 7.343833 ACATTACTCCCTCCGTTCTAAAATAGA 59.656 37.037 0.00 0.00 0.00 1.98
3703 3764 7.498443 ACATTACTCCCTCCGTTCTAAAATAG 58.502 38.462 0.00 0.00 0.00 1.73
3704 3765 7.427989 ACATTACTCCCTCCGTTCTAAAATA 57.572 36.000 0.00 0.00 0.00 1.40
3705 3766 6.309389 ACATTACTCCCTCCGTTCTAAAAT 57.691 37.500 0.00 0.00 0.00 1.82
3706 3767 5.750352 ACATTACTCCCTCCGTTCTAAAA 57.250 39.130 0.00 0.00 0.00 1.52
3707 3768 5.484715 CAACATTACTCCCTCCGTTCTAAA 58.515 41.667 0.00 0.00 0.00 1.85
3708 3769 4.622220 GCAACATTACTCCCTCCGTTCTAA 60.622 45.833 0.00 0.00 0.00 2.10
3709 3770 3.118884 GCAACATTACTCCCTCCGTTCTA 60.119 47.826 0.00 0.00 0.00 2.10
3710 3771 2.354805 GCAACATTACTCCCTCCGTTCT 60.355 50.000 0.00 0.00 0.00 3.01
3711 3772 2.007608 GCAACATTACTCCCTCCGTTC 58.992 52.381 0.00 0.00 0.00 3.95
3712 3773 1.349688 TGCAACATTACTCCCTCCGTT 59.650 47.619 0.00 0.00 0.00 4.44
3713 3774 0.981183 TGCAACATTACTCCCTCCGT 59.019 50.000 0.00 0.00 0.00 4.69
3714 3775 2.107950 TTGCAACATTACTCCCTCCG 57.892 50.000 0.00 0.00 0.00 4.63
3715 3776 3.421844 AGTTTGCAACATTACTCCCTCC 58.578 45.455 0.00 0.00 0.00 4.30
3716 3777 4.327680 AGAGTTTGCAACATTACTCCCTC 58.672 43.478 20.30 6.73 38.17 4.30
3717 3778 4.373156 AGAGTTTGCAACATTACTCCCT 57.627 40.909 20.30 5.48 38.17 4.20
3718 3779 4.278419 ACAAGAGTTTGCAACATTACTCCC 59.722 41.667 20.30 3.33 38.17 4.30
3719 3780 5.438761 ACAAGAGTTTGCAACATTACTCC 57.561 39.130 20.30 7.51 38.17 3.85
3720 3781 5.452777 GGACAAGAGTTTGCAACATTACTC 58.547 41.667 17.53 17.53 37.85 2.59
3721 3782 4.024048 CGGACAAGAGTTTGCAACATTACT 60.024 41.667 0.00 0.00 37.85 2.24
3722 3783 4.219033 CGGACAAGAGTTTGCAACATTAC 58.781 43.478 0.00 0.00 37.85 1.89
3723 3784 3.880490 ACGGACAAGAGTTTGCAACATTA 59.120 39.130 0.00 0.00 37.85 1.90
3724 3785 2.687935 ACGGACAAGAGTTTGCAACATT 59.312 40.909 0.00 0.00 37.85 2.71
3725 3786 2.297701 ACGGACAAGAGTTTGCAACAT 58.702 42.857 0.00 0.00 37.85 2.71
3726 3787 1.745232 ACGGACAAGAGTTTGCAACA 58.255 45.000 0.00 0.00 37.85 3.33
3727 3788 2.844122 AACGGACAAGAGTTTGCAAC 57.156 45.000 0.00 0.00 37.85 4.17
3728 3789 2.098443 GGAAACGGACAAGAGTTTGCAA 59.902 45.455 0.00 0.00 44.44 4.08
3729 3790 1.673920 GGAAACGGACAAGAGTTTGCA 59.326 47.619 7.50 0.00 44.44 4.08
3730 3791 1.947456 AGGAAACGGACAAGAGTTTGC 59.053 47.619 4.77 4.77 45.07 3.68
3731 3792 3.877508 AGAAGGAAACGGACAAGAGTTTG 59.122 43.478 0.00 0.00 40.24 2.93
3732 3793 4.152284 AGAAGGAAACGGACAAGAGTTT 57.848 40.909 0.00 0.00 42.50 2.66
3733 3794 3.840124 AGAAGGAAACGGACAAGAGTT 57.160 42.857 0.00 0.00 0.00 3.01
3734 3795 3.840124 AAGAAGGAAACGGACAAGAGT 57.160 42.857 0.00 0.00 0.00 3.24
3735 3796 5.932303 TGATTAAGAAGGAAACGGACAAGAG 59.068 40.000 0.00 0.00 0.00 2.85
3736 3797 5.860611 TGATTAAGAAGGAAACGGACAAGA 58.139 37.500 0.00 0.00 0.00 3.02
3737 3798 6.554334 TTGATTAAGAAGGAAACGGACAAG 57.446 37.500 0.00 0.00 0.00 3.16
3738 3799 6.072175 CCATTGATTAAGAAGGAAACGGACAA 60.072 38.462 0.00 0.00 0.00 3.18
3739 3800 5.414454 CCATTGATTAAGAAGGAAACGGACA 59.586 40.000 0.00 0.00 0.00 4.02
3740 3801 5.646360 TCCATTGATTAAGAAGGAAACGGAC 59.354 40.000 0.00 0.00 0.00 4.79
3741 3802 5.811190 TCCATTGATTAAGAAGGAAACGGA 58.189 37.500 0.00 0.00 0.00 4.69
3742 3803 6.318648 TCATCCATTGATTAAGAAGGAAACGG 59.681 38.462 0.00 0.00 0.00 4.44
3743 3804 7.320443 TCATCCATTGATTAAGAAGGAAACG 57.680 36.000 0.00 0.00 0.00 3.60
3744 3805 7.682981 GCCTCATCCATTGATTAAGAAGGAAAC 60.683 40.741 0.00 0.00 32.72 2.78
3745 3806 6.322201 GCCTCATCCATTGATTAAGAAGGAAA 59.678 38.462 0.00 0.00 32.72 3.13
3746 3807 5.829924 GCCTCATCCATTGATTAAGAAGGAA 59.170 40.000 0.00 0.00 32.72 3.36
3747 3808 5.103982 TGCCTCATCCATTGATTAAGAAGGA 60.104 40.000 0.00 0.00 32.72 3.36
3748 3809 5.135383 TGCCTCATCCATTGATTAAGAAGG 58.865 41.667 0.00 0.00 32.72 3.46
3749 3810 6.704289 TTGCCTCATCCATTGATTAAGAAG 57.296 37.500 0.00 0.00 32.72 2.85
3750 3811 6.406177 GCTTTGCCTCATCCATTGATTAAGAA 60.406 38.462 0.00 0.00 32.72 2.52
3751 3812 5.068198 GCTTTGCCTCATCCATTGATTAAGA 59.932 40.000 0.00 0.00 32.72 2.10
3752 3813 5.068723 AGCTTTGCCTCATCCATTGATTAAG 59.931 40.000 0.00 0.00 32.72 1.85
3753 3814 4.957954 AGCTTTGCCTCATCCATTGATTAA 59.042 37.500 0.00 0.00 32.72 1.40
3754 3815 4.539726 AGCTTTGCCTCATCCATTGATTA 58.460 39.130 0.00 0.00 32.72 1.75
3755 3816 3.371965 AGCTTTGCCTCATCCATTGATT 58.628 40.909 0.00 0.00 32.72 2.57
3756 3817 3.028094 AGCTTTGCCTCATCCATTGAT 57.972 42.857 0.00 0.00 32.72 2.57
3757 3818 2.519771 AGCTTTGCCTCATCCATTGA 57.480 45.000 0.00 0.00 0.00 2.57
3758 3819 3.066342 CACTAGCTTTGCCTCATCCATTG 59.934 47.826 0.00 0.00 0.00 2.82
3759 3820 3.285484 CACTAGCTTTGCCTCATCCATT 58.715 45.455 0.00 0.00 0.00 3.16
3760 3821 2.240667 ACACTAGCTTTGCCTCATCCAT 59.759 45.455 0.00 0.00 0.00 3.41
3761 3822 1.630369 ACACTAGCTTTGCCTCATCCA 59.370 47.619 0.00 0.00 0.00 3.41
3762 3823 2.409948 ACACTAGCTTTGCCTCATCC 57.590 50.000 0.00 0.00 0.00 3.51
3763 3824 3.873952 CCTAACACTAGCTTTGCCTCATC 59.126 47.826 0.00 0.00 0.00 2.92
3764 3825 3.519510 TCCTAACACTAGCTTTGCCTCAT 59.480 43.478 0.00 0.00 0.00 2.90
3765 3826 2.903784 TCCTAACACTAGCTTTGCCTCA 59.096 45.455 0.00 0.00 0.00 3.86
3766 3827 3.611766 TCCTAACACTAGCTTTGCCTC 57.388 47.619 0.00 0.00 0.00 4.70
3767 3828 3.264450 ACATCCTAACACTAGCTTTGCCT 59.736 43.478 0.00 0.00 0.00 4.75
3768 3829 3.610911 ACATCCTAACACTAGCTTTGCC 58.389 45.455 0.00 0.00 0.00 4.52
3769 3830 4.695455 TCAACATCCTAACACTAGCTTTGC 59.305 41.667 0.00 0.00 0.00 3.68
3770 3831 5.163814 GCTCAACATCCTAACACTAGCTTTG 60.164 44.000 0.00 0.00 0.00 2.77
3771 3832 4.938226 GCTCAACATCCTAACACTAGCTTT 59.062 41.667 0.00 0.00 0.00 3.51
3772 3833 4.508662 GCTCAACATCCTAACACTAGCTT 58.491 43.478 0.00 0.00 0.00 3.74
3773 3834 3.429547 CGCTCAACATCCTAACACTAGCT 60.430 47.826 0.00 0.00 0.00 3.32
3774 3835 2.860735 CGCTCAACATCCTAACACTAGC 59.139 50.000 0.00 0.00 0.00 3.42
3775 3836 3.859961 CACGCTCAACATCCTAACACTAG 59.140 47.826 0.00 0.00 0.00 2.57
3776 3837 3.508402 TCACGCTCAACATCCTAACACTA 59.492 43.478 0.00 0.00 0.00 2.74
3777 3838 2.299013 TCACGCTCAACATCCTAACACT 59.701 45.455 0.00 0.00 0.00 3.55
3778 3839 2.683968 TCACGCTCAACATCCTAACAC 58.316 47.619 0.00 0.00 0.00 3.32
3779 3840 3.610040 ATCACGCTCAACATCCTAACA 57.390 42.857 0.00 0.00 0.00 2.41
3780 3841 4.391830 TCAAATCACGCTCAACATCCTAAC 59.608 41.667 0.00 0.00 0.00 2.34
3781 3842 4.574892 TCAAATCACGCTCAACATCCTAA 58.425 39.130 0.00 0.00 0.00 2.69
3782 3843 4.183865 CTCAAATCACGCTCAACATCCTA 58.816 43.478 0.00 0.00 0.00 2.94
3821 4103 3.678662 GCTAGCGCTCTCTGAAAAATTG 58.321 45.455 16.34 0.00 0.00 2.32
3824 4106 1.067846 TCGCTAGCGCTCTCTGAAAAA 60.068 47.619 31.82 7.47 39.59 1.94
3845 4127 7.732222 AGATTGTTCTATCTCTCAACCTCTT 57.268 36.000 0.00 0.00 28.74 2.85
3860 4142 3.056536 TCAGTGCGCTAAGAGATTGTTCT 60.057 43.478 9.73 0.00 33.88 3.01
3866 4148 2.692557 ACAGATCAGTGCGCTAAGAGAT 59.307 45.455 9.73 5.01 0.00 2.75
3875 4157 2.084610 TCTCCAAACAGATCAGTGCG 57.915 50.000 0.00 0.00 0.00 5.34
3879 4166 7.164230 ACTACTACTTCTCCAAACAGATCAG 57.836 40.000 0.00 0.00 0.00 2.90
3890 4177 7.697291 CACACGAGAAATTACTACTACTTCTCC 59.303 40.741 0.00 0.00 39.10 3.71
3899 4186 6.007677 CGAAAAGCACACGAGAAATTACTAC 58.992 40.000 0.00 0.00 0.00 2.73
3901 4188 4.510340 ACGAAAAGCACACGAGAAATTACT 59.490 37.500 0.00 0.00 0.00 2.24
3902 4189 4.769215 ACGAAAAGCACACGAGAAATTAC 58.231 39.130 0.00 0.00 0.00 1.89
3903 4190 6.528014 TTACGAAAAGCACACGAGAAATTA 57.472 33.333 0.00 0.00 0.00 1.40
3904 4191 3.963383 ACGAAAAGCACACGAGAAATT 57.037 38.095 0.00 0.00 0.00 1.82
3966 4253 8.450180 TGGATTTTTCTTTGAAAAGTTTGAAGC 58.550 29.630 2.88 0.00 37.31 3.86
3971 4258 7.770433 CCCTCTGGATTTTTCTTTGAAAAGTTT 59.230 33.333 2.88 0.00 37.31 2.66
3978 4265 5.896678 TGTTTCCCTCTGGATTTTTCTTTGA 59.103 36.000 0.00 0.00 41.40 2.69
3980 4267 5.305386 CCTGTTTCCCTCTGGATTTTTCTTT 59.695 40.000 0.00 0.00 41.40 2.52
3984 4271 2.899900 GCCTGTTTCCCTCTGGATTTTT 59.100 45.455 0.00 0.00 41.40 1.94
3985 4272 2.158325 TGCCTGTTTCCCTCTGGATTTT 60.158 45.455 0.00 0.00 41.40 1.82
3986 4273 1.428912 TGCCTGTTTCCCTCTGGATTT 59.571 47.619 0.00 0.00 41.40 2.17
3987 4274 1.075601 TGCCTGTTTCCCTCTGGATT 58.924 50.000 0.00 0.00 41.40 3.01
3988 4275 1.075601 TTGCCTGTTTCCCTCTGGAT 58.924 50.000 0.00 0.00 41.40 3.41
3989 4276 0.850100 TTTGCCTGTTTCCCTCTGGA 59.150 50.000 0.00 0.00 39.54 3.86
3990 4277 1.615392 CTTTTGCCTGTTTCCCTCTGG 59.385 52.381 0.00 0.00 0.00 3.86
3991 4278 2.555757 CTCTTTTGCCTGTTTCCCTCTG 59.444 50.000 0.00 0.00 0.00 3.35
3992 4279 2.443255 TCTCTTTTGCCTGTTTCCCTCT 59.557 45.455 0.00 0.00 0.00 3.69
3993 4280 2.554462 GTCTCTTTTGCCTGTTTCCCTC 59.446 50.000 0.00 0.00 0.00 4.30
3994 4281 2.091885 TGTCTCTTTTGCCTGTTTCCCT 60.092 45.455 0.00 0.00 0.00 4.20
3995 4282 2.294512 CTGTCTCTTTTGCCTGTTTCCC 59.705 50.000 0.00 0.00 0.00 3.97
3996 4283 3.214328 TCTGTCTCTTTTGCCTGTTTCC 58.786 45.455 0.00 0.00 0.00 3.13
3997 4284 3.251972 CCTCTGTCTCTTTTGCCTGTTTC 59.748 47.826 0.00 0.00 0.00 2.78
3998 4285 3.117888 TCCTCTGTCTCTTTTGCCTGTTT 60.118 43.478 0.00 0.00 0.00 2.83
3999 4286 2.439507 TCCTCTGTCTCTTTTGCCTGTT 59.560 45.455 0.00 0.00 0.00 3.16
4000 4287 2.050144 TCCTCTGTCTCTTTTGCCTGT 58.950 47.619 0.00 0.00 0.00 4.00
4001 4288 2.847327 TCCTCTGTCTCTTTTGCCTG 57.153 50.000 0.00 0.00 0.00 4.85
4002 4289 3.864789 TTTCCTCTGTCTCTTTTGCCT 57.135 42.857 0.00 0.00 0.00 4.75
4003 4290 3.632145 TGTTTTCCTCTGTCTCTTTTGCC 59.368 43.478 0.00 0.00 0.00 4.52
4004 4291 4.900635 TGTTTTCCTCTGTCTCTTTTGC 57.099 40.909 0.00 0.00 0.00 3.68
4005 4292 6.683974 TCTTGTTTTCCTCTGTCTCTTTTG 57.316 37.500 0.00 0.00 0.00 2.44
4006 4293 6.659242 TGTTCTTGTTTTCCTCTGTCTCTTTT 59.341 34.615 0.00 0.00 0.00 2.27
4007 4294 6.180472 TGTTCTTGTTTTCCTCTGTCTCTTT 58.820 36.000 0.00 0.00 0.00 2.52
4008 4295 5.745227 TGTTCTTGTTTTCCTCTGTCTCTT 58.255 37.500 0.00 0.00 0.00 2.85
4009 4296 5.359194 TGTTCTTGTTTTCCTCTGTCTCT 57.641 39.130 0.00 0.00 0.00 3.10
4010 4297 6.436843 TTTGTTCTTGTTTTCCTCTGTCTC 57.563 37.500 0.00 0.00 0.00 3.36
4011 4298 6.127619 CCTTTTGTTCTTGTTTTCCTCTGTCT 60.128 38.462 0.00 0.00 0.00 3.41
4012 4299 6.036470 CCTTTTGTTCTTGTTTTCCTCTGTC 58.964 40.000 0.00 0.00 0.00 3.51
4013 4300 5.624509 GCCTTTTGTTCTTGTTTTCCTCTGT 60.625 40.000 0.00 0.00 0.00 3.41
4014 4301 4.805719 GCCTTTTGTTCTTGTTTTCCTCTG 59.194 41.667 0.00 0.00 0.00 3.35
4015 4302 4.141937 GGCCTTTTGTTCTTGTTTTCCTCT 60.142 41.667 0.00 0.00 0.00 3.69
4016 4303 4.119862 GGCCTTTTGTTCTTGTTTTCCTC 58.880 43.478 0.00 0.00 0.00 3.71
4017 4304 3.430236 CGGCCTTTTGTTCTTGTTTTCCT 60.430 43.478 0.00 0.00 0.00 3.36
4018 4305 2.863740 CGGCCTTTTGTTCTTGTTTTCC 59.136 45.455 0.00 0.00 0.00 3.13
4019 4306 2.863740 CCGGCCTTTTGTTCTTGTTTTC 59.136 45.455 0.00 0.00 0.00 2.29
4020 4307 2.899976 CCGGCCTTTTGTTCTTGTTTT 58.100 42.857 0.00 0.00 0.00 2.43
4021 4308 1.472552 GCCGGCCTTTTGTTCTTGTTT 60.473 47.619 18.11 0.00 0.00 2.83
4022 4309 0.104120 GCCGGCCTTTTGTTCTTGTT 59.896 50.000 18.11 0.00 0.00 2.83
4023 4310 1.739667 GCCGGCCTTTTGTTCTTGT 59.260 52.632 18.11 0.00 0.00 3.16
4024 4311 1.371635 CGCCGGCCTTTTGTTCTTG 60.372 57.895 23.46 0.00 0.00 3.02
4025 4312 1.515521 CTCGCCGGCCTTTTGTTCTT 61.516 55.000 23.46 0.00 0.00 2.52
4026 4313 1.966451 CTCGCCGGCCTTTTGTTCT 60.966 57.895 23.46 0.00 0.00 3.01
4027 4314 2.561373 CTCGCCGGCCTTTTGTTC 59.439 61.111 23.46 0.00 0.00 3.18
4028 4315 2.983592 CCTCGCCGGCCTTTTGTT 60.984 61.111 23.46 0.00 0.00 2.83
4029 4316 3.785122 AACCTCGCCGGCCTTTTGT 62.785 57.895 23.46 8.45 35.61 2.83
4030 4317 2.983592 AACCTCGCCGGCCTTTTG 60.984 61.111 23.46 6.36 35.61 2.44
4031 4318 2.983592 CAACCTCGCCGGCCTTTT 60.984 61.111 23.46 6.10 35.61 2.27
4037 4324 4.077184 TACCAGCAACCTCGCCGG 62.077 66.667 0.00 0.00 35.44 6.13
4038 4325 2.509336 CTACCAGCAACCTCGCCG 60.509 66.667 0.00 0.00 0.00 6.46
4039 4326 2.663196 ACTACCAGCAACCTCGCC 59.337 61.111 0.00 0.00 0.00 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.