Multiple sequence alignment - TraesCS1B01G187700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G187700 chr1B 100.000 2568 0 0 1 2568 335977780 335975213 0.000000e+00 4743.0
1 TraesCS1B01G187700 chr1B 94.118 153 9 0 667 819 66488948 66488796 1.540000e-57 233.0
2 TraesCS1B01G187700 chr1D 93.515 956 33 11 881 1816 238328357 238329303 0.000000e+00 1395.0
3 TraesCS1B01G187700 chr1D 95.007 721 26 5 1856 2568 238329408 238330126 0.000000e+00 1123.0
4 TraesCS1B01G187700 chr1D 92.344 209 13 2 1 209 238328055 238328260 6.950000e-76 294.0
5 TraesCS1B01G187700 chr1D 95.146 103 5 0 574 676 238328260 238328362 2.040000e-36 163.0
6 TraesCS1B01G187700 chr1A 89.375 960 48 18 881 1799 301894041 301894987 0.000000e+00 1158.0
7 TraesCS1B01G187700 chr1A 95.291 722 25 6 1853 2568 301895978 301896696 0.000000e+00 1136.0
8 TraesCS1B01G187700 chr1A 96.364 110 4 0 563 672 301893933 301894042 5.640000e-42 182.0
9 TraesCS1B01G187700 chr1A 92.857 56 4 0 1 56 301893414 301893469 5.890000e-12 82.4
10 TraesCS1B01G187700 chr3D 89.911 337 28 4 231 562 379244460 379244795 1.830000e-116 429.0
11 TraesCS1B01G187700 chr3D 94.156 154 9 0 666 819 238999409 238999562 4.270000e-58 235.0
12 TraesCS1B01G187700 chr3D 92.424 66 5 0 820 885 528190585 528190520 7.560000e-16 95.3
13 TraesCS1B01G187700 chr4A 87.647 340 35 5 230 562 717760981 717761320 3.100000e-104 388.0
14 TraesCS1B01G187700 chr4A 84.393 346 47 5 230 569 34269508 34269852 1.470000e-87 333.0
15 TraesCS1B01G187700 chr2B 87.963 324 34 3 230 548 23918416 23918093 6.710000e-101 377.0
16 TraesCS1B01G187700 chr2B 84.706 340 44 6 230 562 138085547 138085209 1.470000e-87 333.0
17 TraesCS1B01G187700 chr2B 94.268 157 8 1 663 819 53410877 53410722 3.300000e-59 239.0
18 TraesCS1B01G187700 chr2B 95.238 63 3 0 822 884 651205733 651205671 1.630000e-17 100.0
19 TraesCS1B01G187700 chr5D 86.136 339 36 7 231 563 268552579 268552912 3.140000e-94 355.0
20 TraesCS1B01G187700 chr5D 92.857 70 5 0 820 889 365349734 365349803 4.520000e-18 102.0
21 TraesCS1B01G187700 chr6B 85.131 343 42 7 231 565 222319767 222319426 2.450000e-90 342.0
22 TraesCS1B01G187700 chr6B 95.973 149 6 0 671 819 699977449 699977597 2.550000e-60 243.0
23 TraesCS1B01G187700 chr6B 94.156 154 9 0 666 819 469042121 469041968 4.270000e-58 235.0
24 TraesCS1B01G187700 chr5B 85.417 336 37 9 236 562 121301188 121301520 3.170000e-89 339.0
25 TraesCS1B01G187700 chr4B 84.164 341 45 7 231 563 597763410 597763071 3.190000e-84 322.0
26 TraesCS1B01G187700 chr4B 95.302 149 7 0 671 819 63753841 63753989 1.190000e-58 237.0
27 TraesCS1B01G187700 chr4B 95.238 63 3 0 822 884 442069600 442069538 1.630000e-17 100.0
28 TraesCS1B01G187700 chr4B 90.411 73 5 2 820 890 98363160 98363088 7.560000e-16 95.3
29 TraesCS1B01G187700 chr4D 94.737 152 8 0 668 819 230542547 230542698 1.190000e-58 237.0
30 TraesCS1B01G187700 chr4D 93.846 65 4 0 820 884 417357422 417357486 5.850000e-17 99.0
31 TraesCS1B01G187700 chr7B 91.617 167 10 3 654 819 316400947 316400784 7.150000e-56 228.0
32 TraesCS1B01G187700 chr7B 82.258 186 27 5 638 819 339609292 339609475 3.420000e-34 156.0
33 TraesCS1B01G187700 chr2D 93.464 153 10 0 667 819 56541160 56541008 7.150000e-56 228.0
34 TraesCS1B01G187700 chr5A 85.185 162 18 5 662 819 633991882 633991723 7.350000e-36 161.0
35 TraesCS1B01G187700 chr7D 82.258 186 27 5 638 819 296501043 296501226 3.420000e-34 156.0
36 TraesCS1B01G187700 chr7D 95.238 63 3 0 820 882 141292770 141292832 1.630000e-17 100.0
37 TraesCS1B01G187700 chr7A 95.455 66 3 0 820 885 492528724 492528659 3.490000e-19 106.0
38 TraesCS1B01G187700 chr7A 95.385 65 3 0 820 884 246344272 246344208 1.260000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G187700 chr1B 335975213 335977780 2567 True 4743.00 4743 100.00000 1 2568 1 chr1B.!!$R2 2567
1 TraesCS1B01G187700 chr1D 238328055 238330126 2071 False 743.75 1395 94.00300 1 2568 4 chr1D.!!$F1 2567
2 TraesCS1B01G187700 chr1A 301893414 301896696 3282 False 639.60 1158 93.47175 1 2568 4 chr1A.!!$F1 2567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
245 554 0.106868 TCGCGGAAGTGGATCCTCTA 60.107 55.0 16.52 0.0 43.13 2.43 F
1315 1630 0.672401 CTGCCCGGTCGAAGCTTTAA 60.672 55.0 0.00 0.0 0.00 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1531 1870 0.178068 TCCGGTAAGCATTCCTCTGC 59.822 55.0 0.0 0.0 42.62 4.26 R
2249 3547 0.742990 CGCGGCACTCCCTTATCAAA 60.743 55.0 0.0 0.0 0.00 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 1.470285 GCGTGAAGGTAATGTAGCCGA 60.470 52.381 0.00 0.00 0.00 5.54
44 45 3.044235 TGTAGCCGATCATAGCATTGG 57.956 47.619 0.00 0.00 0.00 3.16
94 400 4.043750 CACTGCTTGTTGGTTGTGTAATG 58.956 43.478 0.00 0.00 0.00 1.90
139 445 3.012518 GTGGCTGCTGATTGTCATAACT 58.987 45.455 0.00 0.00 0.00 2.24
201 510 5.183530 TGGAGAAGGTCACAATGATGAAT 57.816 39.130 0.00 0.00 0.00 2.57
209 518 4.418392 GTCACAATGATGAATCAACTGGC 58.582 43.478 0.00 0.00 40.69 4.85
212 521 2.684374 CAATGATGAATCAACTGGCGGA 59.316 45.455 0.00 0.00 40.69 5.54
213 522 1.737838 TGATGAATCAACTGGCGGAC 58.262 50.000 0.00 0.00 33.08 4.79
214 523 1.003003 TGATGAATCAACTGGCGGACA 59.997 47.619 0.00 0.00 33.08 4.02
215 524 1.398390 GATGAATCAACTGGCGGACAC 59.602 52.381 0.00 0.00 0.00 3.67
216 525 0.948623 TGAATCAACTGGCGGACACG 60.949 55.000 0.00 0.00 44.63 4.49
227 536 2.126189 GGACACGCCGTACACCTC 60.126 66.667 0.00 0.00 0.00 3.85
228 537 2.503375 GACACGCCGTACACCTCG 60.503 66.667 0.00 0.00 0.00 4.63
229 538 4.712425 ACACGCCGTACACCTCGC 62.712 66.667 0.00 0.00 0.00 5.03
235 544 2.564975 CGTACACCTCGCGGAAGT 59.435 61.111 6.13 2.76 0.00 3.01
236 545 1.800315 CGTACACCTCGCGGAAGTG 60.800 63.158 18.26 18.26 44.62 3.16
237 546 1.445582 GTACACCTCGCGGAAGTGG 60.446 63.158 21.95 12.92 43.13 4.00
238 547 1.604308 TACACCTCGCGGAAGTGGA 60.604 57.895 21.95 14.58 43.13 4.02
239 548 0.968901 TACACCTCGCGGAAGTGGAT 60.969 55.000 21.95 9.53 43.13 3.41
240 549 1.519455 CACCTCGCGGAAGTGGATC 60.519 63.158 6.13 0.00 43.13 3.36
241 550 2.107141 CCTCGCGGAAGTGGATCC 59.893 66.667 6.13 4.20 43.13 3.36
242 551 2.427245 CCTCGCGGAAGTGGATCCT 61.427 63.158 14.23 0.00 43.13 3.24
243 552 1.066587 CTCGCGGAAGTGGATCCTC 59.933 63.158 14.23 9.81 43.13 3.71
244 553 1.379977 TCGCGGAAGTGGATCCTCT 60.380 57.895 14.23 12.34 43.13 3.69
245 554 0.106868 TCGCGGAAGTGGATCCTCTA 60.107 55.000 16.52 0.00 43.13 2.43
246 555 0.744874 CGCGGAAGTGGATCCTCTAA 59.255 55.000 16.52 0.00 37.34 2.10
247 556 1.536284 CGCGGAAGTGGATCCTCTAAC 60.536 57.143 16.52 13.01 37.34 2.34
248 557 1.480954 GCGGAAGTGGATCCTCTAACA 59.519 52.381 16.52 0.00 37.34 2.41
249 558 2.103263 GCGGAAGTGGATCCTCTAACAT 59.897 50.000 16.52 1.06 37.34 2.71
250 559 3.722147 CGGAAGTGGATCCTCTAACATG 58.278 50.000 16.52 7.20 37.34 3.21
251 560 3.384789 CGGAAGTGGATCCTCTAACATGA 59.615 47.826 16.52 0.00 37.34 3.07
252 561 4.141937 CGGAAGTGGATCCTCTAACATGAA 60.142 45.833 16.52 0.00 37.34 2.57
253 562 5.363939 GGAAGTGGATCCTCTAACATGAAG 58.636 45.833 16.52 0.00 36.50 3.02
254 563 5.363939 GAAGTGGATCCTCTAACATGAAGG 58.636 45.833 16.52 0.63 0.00 3.46
255 564 4.624913 AGTGGATCCTCTAACATGAAGGA 58.375 43.478 14.73 6.54 0.00 3.36
256 565 4.653341 AGTGGATCCTCTAACATGAAGGAG 59.347 45.833 14.73 3.27 31.64 3.69
257 566 3.969976 TGGATCCTCTAACATGAAGGAGG 59.030 47.826 14.23 19.03 44.69 4.30
263 572 6.934048 CCTCTAACATGAAGGAGGAAAATC 57.066 41.667 19.84 0.00 45.79 2.17
264 573 6.418101 CCTCTAACATGAAGGAGGAAAATCA 58.582 40.000 19.84 0.00 45.79 2.57
265 574 7.059156 CCTCTAACATGAAGGAGGAAAATCAT 58.941 38.462 19.84 0.00 45.79 2.45
266 575 7.228308 CCTCTAACATGAAGGAGGAAAATCATC 59.772 40.741 19.84 0.00 45.79 2.92
267 576 7.865820 TCTAACATGAAGGAGGAAAATCATCT 58.134 34.615 0.00 0.00 30.39 2.90
268 577 8.992349 TCTAACATGAAGGAGGAAAATCATCTA 58.008 33.333 0.00 0.00 30.39 1.98
269 578 9.618890 CTAACATGAAGGAGGAAAATCATCTAA 57.381 33.333 0.00 0.00 30.39 2.10
270 579 8.517062 AACATGAAGGAGGAAAATCATCTAAG 57.483 34.615 0.00 0.00 30.39 2.18
271 580 6.545298 ACATGAAGGAGGAAAATCATCTAAGC 59.455 38.462 0.00 0.00 30.39 3.09
272 581 6.319048 TGAAGGAGGAAAATCATCTAAGCT 57.681 37.500 0.00 0.00 0.00 3.74
273 582 7.437713 TGAAGGAGGAAAATCATCTAAGCTA 57.562 36.000 0.00 0.00 0.00 3.32
274 583 7.275920 TGAAGGAGGAAAATCATCTAAGCTAC 58.724 38.462 0.00 0.00 0.00 3.58
275 584 6.814954 AGGAGGAAAATCATCTAAGCTACA 57.185 37.500 0.00 0.00 0.00 2.74
276 585 7.200434 AGGAGGAAAATCATCTAAGCTACAA 57.800 36.000 0.00 0.00 0.00 2.41
277 586 7.810260 AGGAGGAAAATCATCTAAGCTACAAT 58.190 34.615 0.00 0.00 0.00 2.71
278 587 8.277918 AGGAGGAAAATCATCTAAGCTACAATT 58.722 33.333 0.00 0.00 0.00 2.32
279 588 8.563732 GGAGGAAAATCATCTAAGCTACAATTC 58.436 37.037 0.00 0.00 0.00 2.17
280 589 9.336171 GAGGAAAATCATCTAAGCTACAATTCT 57.664 33.333 0.00 0.00 0.00 2.40
281 590 9.336171 AGGAAAATCATCTAAGCTACAATTCTC 57.664 33.333 0.00 0.00 0.00 2.87
282 591 9.336171 GGAAAATCATCTAAGCTACAATTCTCT 57.664 33.333 0.00 0.00 0.00 3.10
290 599 9.825109 ATCTAAGCTACAATTCTCTAACTTTCC 57.175 33.333 0.00 0.00 0.00 3.13
291 600 9.036980 TCTAAGCTACAATTCTCTAACTTTCCT 57.963 33.333 0.00 0.00 0.00 3.36
292 601 9.308318 CTAAGCTACAATTCTCTAACTTTCCTC 57.692 37.037 0.00 0.00 0.00 3.71
293 602 6.645306 AGCTACAATTCTCTAACTTTCCTCC 58.355 40.000 0.00 0.00 0.00 4.30
294 603 6.442244 AGCTACAATTCTCTAACTTTCCTCCT 59.558 38.462 0.00 0.00 0.00 3.69
295 604 7.037945 AGCTACAATTCTCTAACTTTCCTCCTT 60.038 37.037 0.00 0.00 0.00 3.36
296 605 7.279090 GCTACAATTCTCTAACTTTCCTCCTTC 59.721 40.741 0.00 0.00 0.00 3.46
297 606 7.079451 ACAATTCTCTAACTTTCCTCCTTCA 57.921 36.000 0.00 0.00 0.00 3.02
298 607 6.937465 ACAATTCTCTAACTTTCCTCCTTCAC 59.063 38.462 0.00 0.00 0.00 3.18
299 608 6.943899 ATTCTCTAACTTTCCTCCTTCACT 57.056 37.500 0.00 0.00 0.00 3.41
300 609 6.749036 TTCTCTAACTTTCCTCCTTCACTT 57.251 37.500 0.00 0.00 0.00 3.16
301 610 6.347859 TCTCTAACTTTCCTCCTTCACTTC 57.652 41.667 0.00 0.00 0.00 3.01
302 611 5.246429 TCTCTAACTTTCCTCCTTCACTTCC 59.754 44.000 0.00 0.00 0.00 3.46
303 612 4.905456 TCTAACTTTCCTCCTTCACTTCCA 59.095 41.667 0.00 0.00 0.00 3.53
304 613 4.731313 AACTTTCCTCCTTCACTTCCAT 57.269 40.909 0.00 0.00 0.00 3.41
305 614 5.843019 AACTTTCCTCCTTCACTTCCATA 57.157 39.130 0.00 0.00 0.00 2.74
306 615 6.394345 AACTTTCCTCCTTCACTTCCATAT 57.606 37.500 0.00 0.00 0.00 1.78
307 616 5.749462 ACTTTCCTCCTTCACTTCCATATG 58.251 41.667 0.00 0.00 0.00 1.78
308 617 5.488919 ACTTTCCTCCTTCACTTCCATATGA 59.511 40.000 3.65 0.00 0.00 2.15
309 618 6.159398 ACTTTCCTCCTTCACTTCCATATGAT 59.841 38.462 3.65 0.00 0.00 2.45
310 619 6.581388 TTCCTCCTTCACTTCCATATGATT 57.419 37.500 3.65 0.00 0.00 2.57
311 620 7.690454 TTCCTCCTTCACTTCCATATGATTA 57.310 36.000 3.65 0.00 0.00 1.75
312 621 7.690454 TCCTCCTTCACTTCCATATGATTAA 57.310 36.000 3.65 0.00 0.00 1.40
313 622 7.509546 TCCTCCTTCACTTCCATATGATTAAC 58.490 38.462 3.65 0.00 0.00 2.01
314 623 6.425114 CCTCCTTCACTTCCATATGATTAACG 59.575 42.308 3.65 0.00 0.00 3.18
315 624 5.758296 TCCTTCACTTCCATATGATTAACGC 59.242 40.000 3.65 0.00 0.00 4.84
316 625 5.760253 CCTTCACTTCCATATGATTAACGCT 59.240 40.000 3.65 0.00 0.00 5.07
317 626 6.929049 CCTTCACTTCCATATGATTAACGCTA 59.071 38.462 3.65 0.00 0.00 4.26
318 627 7.441157 CCTTCACTTCCATATGATTAACGCTAA 59.559 37.037 3.65 0.00 0.00 3.09
319 628 8.725405 TTCACTTCCATATGATTAACGCTAAA 57.275 30.769 3.65 0.00 0.00 1.85
320 629 8.725405 TCACTTCCATATGATTAACGCTAAAA 57.275 30.769 3.65 0.00 0.00 1.52
321 630 9.337396 TCACTTCCATATGATTAACGCTAAAAT 57.663 29.630 3.65 0.00 0.00 1.82
322 631 9.385902 CACTTCCATATGATTAACGCTAAAATG 57.614 33.333 3.65 0.00 0.00 2.32
323 632 9.337396 ACTTCCATATGATTAACGCTAAAATGA 57.663 29.630 3.65 0.00 0.00 2.57
324 633 9.599322 CTTCCATATGATTAACGCTAAAATGAC 57.401 33.333 3.65 0.00 0.00 3.06
325 634 8.902540 TCCATATGATTAACGCTAAAATGACT 57.097 30.769 3.65 0.00 0.00 3.41
326 635 9.337396 TCCATATGATTAACGCTAAAATGACTT 57.663 29.630 3.65 0.00 0.00 3.01
327 636 9.385902 CCATATGATTAACGCTAAAATGACTTG 57.614 33.333 3.65 0.00 0.00 3.16
331 640 9.722056 ATGATTAACGCTAAAATGACTTGAATC 57.278 29.630 0.00 0.00 0.00 2.52
332 641 8.726068 TGATTAACGCTAAAATGACTTGAATCA 58.274 29.630 0.00 0.00 0.00 2.57
333 642 9.554724 GATTAACGCTAAAATGACTTGAATCAA 57.445 29.630 0.00 0.00 30.82 2.57
335 644 9.906660 TTAACGCTAAAATGACTTGAATCAATT 57.093 25.926 0.00 0.00 30.82 2.32
336 645 8.816640 AACGCTAAAATGACTTGAATCAATTT 57.183 26.923 0.00 0.00 36.10 1.82
337 646 8.231304 ACGCTAAAATGACTTGAATCAATTTG 57.769 30.769 0.00 0.00 33.65 2.32
338 647 7.148755 ACGCTAAAATGACTTGAATCAATTTGC 60.149 33.333 0.00 0.00 33.65 3.68
339 648 7.148771 CGCTAAAATGACTTGAATCAATTTGCA 60.149 33.333 0.00 0.00 33.65 4.08
340 649 8.497554 GCTAAAATGACTTGAATCAATTTGCAA 58.502 29.630 0.00 0.00 33.65 4.08
440 749 9.610705 TTTATTTACCAACAGTAACTGTGTACA 57.389 29.630 0.00 0.00 44.62 2.90
441 750 9.610705 TTATTTACCAACAGTAACTGTGTACAA 57.389 29.630 0.00 0.00 44.62 2.41
442 751 8.685838 ATTTACCAACAGTAACTGTGTACAAT 57.314 30.769 0.00 0.00 44.62 2.71
443 752 9.781633 ATTTACCAACAGTAACTGTGTACAATA 57.218 29.630 0.00 0.00 44.62 1.90
444 753 8.592105 TTACCAACAGTAACTGTGTACAATAC 57.408 34.615 0.00 0.00 44.62 1.89
445 754 5.993441 ACCAACAGTAACTGTGTACAATACC 59.007 40.000 0.00 0.00 44.62 2.73
446 755 6.183361 ACCAACAGTAACTGTGTACAATACCT 60.183 38.462 0.00 0.00 44.62 3.08
447 756 7.015487 ACCAACAGTAACTGTGTACAATACCTA 59.985 37.037 0.00 0.00 44.62 3.08
448 757 7.330208 CCAACAGTAACTGTGTACAATACCTAC 59.670 40.741 0.00 0.00 44.62 3.18
449 758 7.771927 ACAGTAACTGTGTACAATACCTACT 57.228 36.000 0.00 0.00 43.63 2.57
450 759 8.186709 ACAGTAACTGTGTACAATACCTACTT 57.813 34.615 0.00 0.00 43.63 2.24
451 760 9.300681 ACAGTAACTGTGTACAATACCTACTTA 57.699 33.333 0.00 0.00 43.63 2.24
473 782 9.525409 ACTTAAATAGATAATACAACGTTCGCT 57.475 29.630 0.00 0.00 0.00 4.93
476 785 8.861033 AAATAGATAATACAACGTTCGCTACA 57.139 30.769 0.00 0.00 0.00 2.74
477 786 8.503486 AATAGATAATACAACGTTCGCTACAG 57.497 34.615 0.00 0.00 0.00 2.74
478 787 5.888105 AGATAATACAACGTTCGCTACAGT 58.112 37.500 0.00 0.00 0.00 3.55
479 788 7.019774 AGATAATACAACGTTCGCTACAGTA 57.980 36.000 0.00 0.00 0.00 2.74
480 789 7.646314 AGATAATACAACGTTCGCTACAGTAT 58.354 34.615 0.00 0.00 0.00 2.12
481 790 7.802251 AGATAATACAACGTTCGCTACAGTATC 59.198 37.037 0.00 0.00 0.00 2.24
482 791 2.872370 ACAACGTTCGCTACAGTATCC 58.128 47.619 0.00 0.00 0.00 2.59
483 792 1.844357 CAACGTTCGCTACAGTATCCG 59.156 52.381 0.00 0.00 0.00 4.18
484 793 1.089920 ACGTTCGCTACAGTATCCGT 58.910 50.000 0.00 0.00 0.00 4.69
485 794 1.202110 ACGTTCGCTACAGTATCCGTG 60.202 52.381 0.00 0.00 0.00 4.94
486 795 1.063027 CGTTCGCTACAGTATCCGTGA 59.937 52.381 1.98 0.00 0.00 4.35
487 796 2.448219 GTTCGCTACAGTATCCGTGAC 58.552 52.381 1.98 0.36 0.00 3.67
488 797 2.034104 TCGCTACAGTATCCGTGACT 57.966 50.000 1.98 0.00 0.00 3.41
489 798 2.362736 TCGCTACAGTATCCGTGACTT 58.637 47.619 1.98 0.00 0.00 3.01
490 799 2.751259 TCGCTACAGTATCCGTGACTTT 59.249 45.455 1.98 0.00 0.00 2.66
491 800 3.192001 TCGCTACAGTATCCGTGACTTTT 59.808 43.478 1.98 0.00 0.00 2.27
492 801 3.546670 CGCTACAGTATCCGTGACTTTTC 59.453 47.826 0.00 0.00 0.00 2.29
493 802 4.674623 CGCTACAGTATCCGTGACTTTTCT 60.675 45.833 0.00 0.00 0.00 2.52
494 803 5.169295 GCTACAGTATCCGTGACTTTTCTT 58.831 41.667 0.00 0.00 0.00 2.52
495 804 5.638234 GCTACAGTATCCGTGACTTTTCTTT 59.362 40.000 0.00 0.00 0.00 2.52
496 805 6.147328 GCTACAGTATCCGTGACTTTTCTTTT 59.853 38.462 0.00 0.00 0.00 2.27
497 806 6.937436 ACAGTATCCGTGACTTTTCTTTTT 57.063 33.333 0.00 0.00 0.00 1.94
520 829 9.757227 TTTTTATTTTACACTAGCTTGCATTGT 57.243 25.926 0.00 0.00 0.00 2.71
523 832 5.545658 TTTACACTAGCTTGCATTGTAGC 57.454 39.130 0.00 0.00 37.66 3.58
525 834 3.679389 ACACTAGCTTGCATTGTAGCTT 58.321 40.909 15.41 0.00 45.03 3.74
526 835 4.832248 ACACTAGCTTGCATTGTAGCTTA 58.168 39.130 15.41 2.45 45.03 3.09
527 836 4.872691 ACACTAGCTTGCATTGTAGCTTAG 59.127 41.667 15.41 12.41 45.03 2.18
528 837 4.272018 CACTAGCTTGCATTGTAGCTTAGG 59.728 45.833 15.41 9.16 45.03 2.69
529 838 3.356529 AGCTTGCATTGTAGCTTAGGT 57.643 42.857 4.77 0.00 45.03 3.08
530 839 3.012518 AGCTTGCATTGTAGCTTAGGTG 58.987 45.455 4.77 0.00 45.03 4.00
531 840 3.009723 GCTTGCATTGTAGCTTAGGTGA 58.990 45.455 0.00 0.00 34.57 4.02
532 841 3.181506 GCTTGCATTGTAGCTTAGGTGAC 60.182 47.826 0.00 0.00 34.57 3.67
533 842 3.981071 TGCATTGTAGCTTAGGTGACT 57.019 42.857 0.00 0.00 39.04 3.41
534 843 4.286297 TGCATTGTAGCTTAGGTGACTT 57.714 40.909 0.00 0.00 37.36 3.01
535 844 4.651778 TGCATTGTAGCTTAGGTGACTTT 58.348 39.130 0.00 0.00 37.36 2.66
536 845 4.695455 TGCATTGTAGCTTAGGTGACTTTC 59.305 41.667 0.00 0.00 37.36 2.62
537 846 4.095036 GCATTGTAGCTTAGGTGACTTTCC 59.905 45.833 0.00 0.00 43.67 3.13
538 847 5.491982 CATTGTAGCTTAGGTGACTTTCCT 58.508 41.667 0.00 0.00 43.67 3.36
539 848 4.803098 TGTAGCTTAGGTGACTTTCCTC 57.197 45.455 0.00 0.00 43.67 3.71
540 849 3.514309 TGTAGCTTAGGTGACTTTCCTCC 59.486 47.826 0.00 0.00 43.67 4.30
541 850 1.909986 AGCTTAGGTGACTTTCCTCCC 59.090 52.381 0.00 0.00 43.67 4.30
542 851 1.628846 GCTTAGGTGACTTTCCTCCCA 59.371 52.381 0.00 0.00 43.67 4.37
543 852 2.239907 GCTTAGGTGACTTTCCTCCCAT 59.760 50.000 0.00 0.00 43.67 4.00
544 853 3.878778 CTTAGGTGACTTTCCTCCCATG 58.121 50.000 0.00 0.00 43.67 3.66
545 854 1.747444 AGGTGACTTTCCTCCCATGT 58.253 50.000 0.00 0.00 37.44 3.21
546 855 1.630878 AGGTGACTTTCCTCCCATGTC 59.369 52.381 0.00 0.00 37.44 3.06
547 856 1.351017 GGTGACTTTCCTCCCATGTCA 59.649 52.381 0.00 0.00 35.62 3.58
548 857 2.616510 GGTGACTTTCCTCCCATGTCAG 60.617 54.545 0.00 0.00 38.16 3.51
549 858 2.303022 GTGACTTTCCTCCCATGTCAGA 59.697 50.000 0.00 0.00 38.16 3.27
550 859 2.568956 TGACTTTCCTCCCATGTCAGAG 59.431 50.000 0.00 0.00 33.45 3.35
556 865 1.798626 CTCCCATGTCAGAGGATCCA 58.201 55.000 15.82 0.00 33.66 3.41
557 866 1.415659 CTCCCATGTCAGAGGATCCAC 59.584 57.143 15.82 8.01 33.66 4.02
558 867 1.008815 TCCCATGTCAGAGGATCCACT 59.991 52.381 15.82 10.73 33.66 4.00
559 868 1.842562 CCCATGTCAGAGGATCCACTT 59.157 52.381 15.82 0.00 33.66 3.16
560 869 2.158842 CCCATGTCAGAGGATCCACTTC 60.159 54.545 15.82 9.10 33.66 3.01
561 870 2.158842 CCATGTCAGAGGATCCACTTCC 60.159 54.545 15.82 6.23 33.66 3.46
572 881 1.961277 CCACTTCCACACCTCGCAC 60.961 63.158 0.00 0.00 0.00 5.34
578 887 2.100631 CCACACCTCGCACGGATTC 61.101 63.158 0.00 0.00 0.00 2.52
670 979 9.630098 CAAGTTGCTTGTCAAAATTACTGATAT 57.370 29.630 1.06 0.00 36.79 1.63
676 985 9.937175 GCTTGTCAAAATTACTGATATACTTCC 57.063 33.333 0.00 0.00 0.00 3.46
684 993 9.543783 AAATTACTGATATACTTCCTTCGTTCC 57.456 33.333 0.00 0.00 0.00 3.62
685 994 7.893124 TTACTGATATACTTCCTTCGTTCCT 57.107 36.000 0.00 0.00 0.00 3.36
686 995 8.985315 TTACTGATATACTTCCTTCGTTCCTA 57.015 34.615 0.00 0.00 0.00 2.94
687 996 7.893124 ACTGATATACTTCCTTCGTTCCTAA 57.107 36.000 0.00 0.00 0.00 2.69
688 997 8.302515 ACTGATATACTTCCTTCGTTCCTAAA 57.697 34.615 0.00 0.00 0.00 1.85
689 998 8.925338 ACTGATATACTTCCTTCGTTCCTAAAT 58.075 33.333 0.00 0.00 0.00 1.40
697 1006 8.979534 ACTTCCTTCGTTCCTAAATATAAGTCT 58.020 33.333 0.00 0.00 0.00 3.24
698 1007 9.819267 CTTCCTTCGTTCCTAAATATAAGTCTT 57.181 33.333 0.00 0.00 0.00 3.01
700 1009 9.595823 TCCTTCGTTCCTAAATATAAGTCTTTG 57.404 33.333 0.00 0.00 0.00 2.77
701 1010 8.827677 CCTTCGTTCCTAAATATAAGTCTTTGG 58.172 37.037 0.00 0.00 0.00 3.28
702 1011 9.595823 CTTCGTTCCTAAATATAAGTCTTTGGA 57.404 33.333 0.00 0.00 0.00 3.53
703 1012 9.595823 TTCGTTCCTAAATATAAGTCTTTGGAG 57.404 33.333 0.00 0.00 0.00 3.86
704 1013 8.974238 TCGTTCCTAAATATAAGTCTTTGGAGA 58.026 33.333 0.00 0.00 0.00 3.71
705 1014 9.250624 CGTTCCTAAATATAAGTCTTTGGAGAG 57.749 37.037 0.00 0.00 31.07 3.20
723 1032 9.958180 TTTGGAGAGATTTCACTATAAATCACA 57.042 29.630 10.86 3.35 44.70 3.58
728 1037 9.698309 AGAGATTTCACTATAAATCACATACGG 57.302 33.333 10.86 0.00 44.70 4.02
729 1038 9.692749 GAGATTTCACTATAAATCACATACGGA 57.307 33.333 10.86 0.00 44.70 4.69
732 1041 7.652300 TTCACTATAAATCACATACGGATGC 57.348 36.000 7.78 0.00 36.43 3.91
733 1042 6.754193 TCACTATAAATCACATACGGATGCA 58.246 36.000 7.78 0.00 36.43 3.96
734 1043 7.386059 TCACTATAAATCACATACGGATGCAT 58.614 34.615 7.78 0.00 36.43 3.96
735 1044 7.331687 TCACTATAAATCACATACGGATGCATG 59.668 37.037 7.78 0.00 36.43 4.06
736 1045 7.118245 CACTATAAATCACATACGGATGCATGT 59.882 37.037 7.78 0.00 36.43 3.21
737 1046 8.311109 ACTATAAATCACATACGGATGCATGTA 58.689 33.333 7.78 0.83 36.43 2.29
738 1047 5.929697 AAATCACATACGGATGCATGTAG 57.070 39.130 7.78 0.00 36.43 2.74
739 1048 4.871933 ATCACATACGGATGCATGTAGA 57.128 40.909 7.78 0.00 36.43 2.59
740 1049 4.871933 TCACATACGGATGCATGTAGAT 57.128 40.909 7.78 0.00 36.43 1.98
741 1050 4.559153 TCACATACGGATGCATGTAGATG 58.441 43.478 7.78 5.33 36.43 2.90
757 1066 8.877808 CATGTAGATGCATTTTAGAGTGTAGA 57.122 34.615 0.00 0.00 0.00 2.59
758 1067 9.486497 CATGTAGATGCATTTTAGAGTGTAGAT 57.514 33.333 0.00 0.00 0.00 1.98
760 1069 9.534565 TGTAGATGCATTTTAGAGTGTAGATTC 57.465 33.333 0.00 0.00 0.00 2.52
761 1070 9.534565 GTAGATGCATTTTAGAGTGTAGATTCA 57.465 33.333 0.00 0.00 0.00 2.57
762 1071 8.430801 AGATGCATTTTAGAGTGTAGATTCAC 57.569 34.615 0.00 0.00 38.46 3.18
773 1082 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
774 1083 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
775 1084 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
776 1085 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
777 1086 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
778 1087 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
779 1088 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
780 1089 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
781 1090 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
782 1091 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
783 1092 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
784 1093 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
785 1094 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
786 1095 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
787 1096 4.481368 TTTTGCTCCGTATGTAGTCCAT 57.519 40.909 0.00 0.00 37.58 3.41
788 1097 5.601583 TTTTGCTCCGTATGTAGTCCATA 57.398 39.130 0.00 0.00 34.86 2.74
789 1098 4.848562 TTGCTCCGTATGTAGTCCATAG 57.151 45.455 0.00 0.00 36.71 2.23
790 1099 3.828921 TGCTCCGTATGTAGTCCATAGT 58.171 45.455 0.00 0.00 36.71 2.12
791 1100 3.568430 TGCTCCGTATGTAGTCCATAGTG 59.432 47.826 0.00 0.00 36.71 2.74
792 1101 3.819337 GCTCCGTATGTAGTCCATAGTGA 59.181 47.826 0.00 0.00 36.71 3.41
793 1102 4.277672 GCTCCGTATGTAGTCCATAGTGAA 59.722 45.833 0.00 0.00 36.71 3.18
794 1103 5.221185 GCTCCGTATGTAGTCCATAGTGAAA 60.221 44.000 0.00 0.00 36.71 2.69
795 1104 6.516860 GCTCCGTATGTAGTCCATAGTGAAAT 60.517 42.308 0.00 0.00 36.71 2.17
796 1105 6.978338 TCCGTATGTAGTCCATAGTGAAATC 58.022 40.000 0.00 0.00 36.71 2.17
797 1106 6.776116 TCCGTATGTAGTCCATAGTGAAATCT 59.224 38.462 0.00 0.00 36.71 2.40
798 1107 7.040617 TCCGTATGTAGTCCATAGTGAAATCTC 60.041 40.741 0.00 0.00 36.71 2.75
799 1108 7.040340 CCGTATGTAGTCCATAGTGAAATCTCT 60.040 40.741 0.00 0.00 36.71 3.10
800 1109 8.018520 CGTATGTAGTCCATAGTGAAATCTCTC 58.981 40.741 0.00 0.00 36.71 3.20
801 1110 6.716934 TGTAGTCCATAGTGAAATCTCTCC 57.283 41.667 0.00 0.00 0.00 3.71
802 1111 6.194967 TGTAGTCCATAGTGAAATCTCTCCA 58.805 40.000 0.00 0.00 0.00 3.86
803 1112 6.667848 TGTAGTCCATAGTGAAATCTCTCCAA 59.332 38.462 0.00 0.00 0.00 3.53
804 1113 6.627087 AGTCCATAGTGAAATCTCTCCAAA 57.373 37.500 0.00 0.00 0.00 3.28
805 1114 6.648192 AGTCCATAGTGAAATCTCTCCAAAG 58.352 40.000 0.00 0.00 0.00 2.77
806 1115 6.441924 AGTCCATAGTGAAATCTCTCCAAAGA 59.558 38.462 0.00 0.00 0.00 2.52
807 1116 6.536941 GTCCATAGTGAAATCTCTCCAAAGAC 59.463 42.308 0.00 0.00 0.00 3.01
808 1117 6.441924 TCCATAGTGAAATCTCTCCAAAGACT 59.558 38.462 0.00 0.00 0.00 3.24
809 1118 7.038017 TCCATAGTGAAATCTCTCCAAAGACTT 60.038 37.037 0.00 0.00 0.00 3.01
810 1119 8.260818 CCATAGTGAAATCTCTCCAAAGACTTA 58.739 37.037 0.00 0.00 0.00 2.24
811 1120 9.829507 CATAGTGAAATCTCTCCAAAGACTTAT 57.170 33.333 0.00 0.00 0.00 1.73
821 1130 8.204836 TCTCTCCAAAGACTTATATTTAGGTGC 58.795 37.037 0.00 0.00 0.00 5.01
822 1131 8.090788 TCTCCAAAGACTTATATTTAGGTGCT 57.909 34.615 0.00 0.00 0.00 4.40
823 1132 8.204836 TCTCCAAAGACTTATATTTAGGTGCTC 58.795 37.037 0.00 0.00 0.00 4.26
824 1133 7.280356 TCCAAAGACTTATATTTAGGTGCTCC 58.720 38.462 0.00 0.00 0.00 4.70
825 1134 7.054124 CCAAAGACTTATATTTAGGTGCTCCA 58.946 38.462 7.70 0.00 35.89 3.86
826 1135 7.721399 CCAAAGACTTATATTTAGGTGCTCCAT 59.279 37.037 7.70 0.00 35.89 3.41
827 1136 9.778741 CAAAGACTTATATTTAGGTGCTCCATA 57.221 33.333 7.70 0.00 35.89 2.74
829 1138 9.950496 AAGACTTATATTTAGGTGCTCCATATG 57.050 33.333 7.70 0.00 35.89 1.78
830 1139 9.105844 AGACTTATATTTAGGTGCTCCATATGT 57.894 33.333 7.70 4.35 35.89 2.29
835 1144 5.546621 TTTAGGTGCTCCATATGTAGTCC 57.453 43.478 7.70 3.20 35.89 3.85
836 1145 3.046283 AGGTGCTCCATATGTAGTCCA 57.954 47.619 7.70 0.00 35.89 4.02
837 1146 3.591789 AGGTGCTCCATATGTAGTCCAT 58.408 45.455 7.70 0.00 35.33 3.41
838 1147 4.752063 AGGTGCTCCATATGTAGTCCATA 58.248 43.478 7.70 0.00 40.27 2.74
839 1148 4.774726 AGGTGCTCCATATGTAGTCCATAG 59.225 45.833 7.70 0.00 39.36 2.23
840 1149 4.528596 GGTGCTCCATATGTAGTCCATAGT 59.471 45.833 1.24 0.00 39.36 2.12
841 1150 5.473931 GTGCTCCATATGTAGTCCATAGTG 58.526 45.833 1.24 0.00 39.36 2.74
842 1151 5.243954 GTGCTCCATATGTAGTCCATAGTGA 59.756 44.000 1.24 0.00 39.36 3.41
843 1152 5.838521 TGCTCCATATGTAGTCCATAGTGAA 59.161 40.000 1.24 0.00 39.36 3.18
844 1153 6.326323 TGCTCCATATGTAGTCCATAGTGAAA 59.674 38.462 1.24 0.00 39.36 2.69
845 1154 7.016563 TGCTCCATATGTAGTCCATAGTGAAAT 59.983 37.037 1.24 0.00 39.36 2.17
846 1155 7.547370 GCTCCATATGTAGTCCATAGTGAAATC 59.453 40.741 1.24 0.00 39.36 2.17
847 1156 8.727100 TCCATATGTAGTCCATAGTGAAATCT 57.273 34.615 1.24 0.00 39.36 2.40
848 1157 8.807118 TCCATATGTAGTCCATAGTGAAATCTC 58.193 37.037 1.24 0.00 39.36 2.75
849 1158 8.811017 CCATATGTAGTCCATAGTGAAATCTCT 58.189 37.037 1.24 0.00 39.36 3.10
852 1161 7.718334 TGTAGTCCATAGTGAAATCTCTTCA 57.282 36.000 0.00 0.00 0.00 3.02
853 1162 8.134202 TGTAGTCCATAGTGAAATCTCTTCAA 57.866 34.615 0.00 0.00 0.00 2.69
854 1163 8.593679 TGTAGTCCATAGTGAAATCTCTTCAAA 58.406 33.333 0.00 0.00 0.00 2.69
855 1164 9.092876 GTAGTCCATAGTGAAATCTCTTCAAAG 57.907 37.037 0.00 0.00 0.00 2.77
856 1165 7.911651 AGTCCATAGTGAAATCTCTTCAAAGA 58.088 34.615 0.00 0.00 0.00 2.52
857 1166 7.821846 AGTCCATAGTGAAATCTCTTCAAAGAC 59.178 37.037 0.00 0.00 0.00 3.01
858 1167 7.821846 GTCCATAGTGAAATCTCTTCAAAGACT 59.178 37.037 0.00 0.00 0.00 3.24
859 1168 8.378565 TCCATAGTGAAATCTCTTCAAAGACTT 58.621 33.333 0.00 0.00 0.00 3.01
860 1169 9.658799 CCATAGTGAAATCTCTTCAAAGACTTA 57.341 33.333 0.00 0.00 0.00 2.24
876 1185 8.705594 TCAAAGACTTATATTTAGGGACAGAGG 58.294 37.037 0.00 0.00 0.00 3.69
877 1186 7.619512 AAGACTTATATTTAGGGACAGAGGG 57.380 40.000 0.00 0.00 0.00 4.30
878 1187 6.935036 AGACTTATATTTAGGGACAGAGGGA 58.065 40.000 0.00 0.00 0.00 4.20
879 1188 7.013834 AGACTTATATTTAGGGACAGAGGGAG 58.986 42.308 0.00 0.00 0.00 4.30
980 1291 2.483876 CAAAAGAGAGCTCCACGTTCA 58.516 47.619 10.93 0.00 0.00 3.18
1231 1545 1.976112 TACGCCATGTACACCTGCA 59.024 52.632 0.00 0.00 0.00 4.41
1238 1552 0.771127 ATGTACACCTGCACCACCTT 59.229 50.000 0.00 0.00 0.00 3.50
1314 1629 1.079405 CTGCCCGGTCGAAGCTTTA 60.079 57.895 0.00 0.00 0.00 1.85
1315 1630 0.672401 CTGCCCGGTCGAAGCTTTAA 60.672 55.000 0.00 0.00 0.00 1.52
1327 1662 6.349363 GGTCGAAGCTTTAATTTGGTCTGAAT 60.349 38.462 0.00 0.00 0.00 2.57
1501 1840 4.660938 AAGGCCGGGTTGCAGGTC 62.661 66.667 2.18 0.00 0.00 3.85
1531 1870 2.894565 CGAGGGCTACTACTCCGCG 61.895 68.421 0.00 0.00 37.50 6.46
1610 1949 2.391389 GGCTTCTTCACTTCGCCGG 61.391 63.158 0.00 0.00 0.00 6.13
1695 2046 2.753043 CTGCGCTCCAAATGGCCT 60.753 61.111 9.73 0.00 34.44 5.19
1697 2048 3.880846 GCGCTCCAAATGGCCTCG 61.881 66.667 3.32 0.00 34.44 4.63
1712 2063 3.958147 TGGCCTCGAATAACAGTATCTCA 59.042 43.478 3.32 0.00 0.00 3.27
1730 2082 6.949352 ATCTCATAAAAATCTGCGGATGTT 57.051 33.333 9.28 7.01 31.18 2.71
1775 2127 7.224949 GCAGTTTCAGACTAACAGATATTACCC 59.775 40.741 0.00 0.00 36.65 3.69
1811 2523 1.528129 CTGAAGGGCCAACTTCTCAC 58.472 55.000 18.91 0.00 45.49 3.51
1821 2859 3.123621 GCCAACTTCTCACTGTTATGTCG 59.876 47.826 0.00 0.00 0.00 4.35
1830 2868 5.863935 TCTCACTGTTATGTCGATTTCACAG 59.136 40.000 13.30 13.30 38.09 3.66
1838 2876 4.678509 TGTCGATTTCACAGGCATTAAC 57.321 40.909 0.00 0.00 0.00 2.01
1840 2878 2.675844 TCGATTTCACAGGCATTAACCG 59.324 45.455 0.00 0.00 33.69 4.44
1841 2879 2.675844 CGATTTCACAGGCATTAACCGA 59.324 45.455 0.00 0.00 33.69 4.69
1843 2881 4.552767 CGATTTCACAGGCATTAACCGATC 60.553 45.833 0.00 0.00 33.69 3.69
1845 2883 1.557371 TCACAGGCATTAACCGATCCA 59.443 47.619 0.00 0.00 33.69 3.41
1846 2884 1.942657 CACAGGCATTAACCGATCCAG 59.057 52.381 0.00 0.00 33.69 3.86
1848 2886 0.839946 AGGCATTAACCGATCCAGCT 59.160 50.000 0.00 0.00 33.69 4.24
1850 2888 2.024414 GGCATTAACCGATCCAGCTTT 58.976 47.619 0.00 0.00 0.00 3.51
1851 2889 2.223572 GGCATTAACCGATCCAGCTTTG 60.224 50.000 0.00 0.00 0.00 2.77
1919 3209 5.557136 CGAACTGCGCAGAATAATCTTAAGG 60.557 44.000 42.03 13.22 32.03 2.69
1921 3211 5.053145 ACTGCGCAGAATAATCTTAAGGAG 58.947 41.667 42.03 12.10 32.03 3.69
2110 3401 5.981315 TGCAGGTACGCACTAAATATAAGAC 59.019 40.000 0.00 0.00 36.86 3.01
2168 3459 3.067106 GACAGTTCAGGCATTTCGAAGA 58.933 45.455 0.00 0.00 0.00 2.87
2174 3465 2.079158 CAGGCATTTCGAAGAGCTTGA 58.921 47.619 22.75 0.00 38.43 3.02
2180 3471 4.152402 GCATTTCGAAGAGCTTGAGTACAA 59.848 41.667 14.39 0.00 38.43 2.41
2249 3547 2.753029 GGCACTTGGCTGAGGACT 59.247 61.111 0.00 0.00 44.01 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 3.508402 TGTGTTCTTGCGATCTACTACCA 59.492 43.478 0.00 0.00 0.00 3.25
53 54 4.559251 CAGTGTGTTCTTGCGATCTACTAC 59.441 45.833 0.00 0.00 0.00 2.73
54 55 4.733850 CAGTGTGTTCTTGCGATCTACTA 58.266 43.478 0.00 0.00 0.00 1.82
55 56 3.579709 CAGTGTGTTCTTGCGATCTACT 58.420 45.455 0.00 0.00 0.00 2.57
71 72 1.544724 ACACAACCAACAAGCAGTGT 58.455 45.000 0.00 0.00 44.64 3.55
94 400 0.106894 CTAGTGATTTCCTCCGGGGC 59.893 60.000 0.00 0.00 34.39 5.80
212 521 4.712425 GCGAGGTGTACGGCGTGT 62.712 66.667 24.86 0.00 0.00 4.49
225 534 1.066587 GAGGATCCACTTCCGCGAG 59.933 63.158 15.82 0.00 40.94 5.03
226 535 0.106868 TAGAGGATCCACTTCCGCGA 60.107 55.000 17.39 0.00 40.20 5.87
227 536 0.744874 TTAGAGGATCCACTTCCGCG 59.255 55.000 17.39 0.00 40.20 6.46
228 537 1.480954 TGTTAGAGGATCCACTTCCGC 59.519 52.381 17.39 6.12 40.94 5.54
229 538 3.384789 TCATGTTAGAGGATCCACTTCCG 59.615 47.826 17.39 2.77 40.94 4.30
230 539 5.359194 TTCATGTTAGAGGATCCACTTCC 57.641 43.478 17.39 8.65 33.66 3.46
231 540 5.129485 TCCTTCATGTTAGAGGATCCACTTC 59.871 44.000 17.39 11.20 33.66 3.01
232 541 5.032846 TCCTTCATGTTAGAGGATCCACTT 58.967 41.667 17.39 2.46 33.66 3.16
233 542 4.624913 TCCTTCATGTTAGAGGATCCACT 58.375 43.478 16.41 16.41 33.66 4.00
234 543 4.954875 CTCCTTCATGTTAGAGGATCCAC 58.045 47.826 15.82 8.01 33.66 4.02
240 549 6.418101 TGATTTTCCTCCTTCATGTTAGAGG 58.582 40.000 16.66 16.66 46.11 3.69
241 550 7.992033 AGATGATTTTCCTCCTTCATGTTAGAG 59.008 37.037 0.00 0.00 0.00 2.43
242 551 7.865820 AGATGATTTTCCTCCTTCATGTTAGA 58.134 34.615 0.00 0.00 0.00 2.10
243 552 9.618890 TTAGATGATTTTCCTCCTTCATGTTAG 57.381 33.333 0.00 0.00 0.00 2.34
244 553 9.618890 CTTAGATGATTTTCCTCCTTCATGTTA 57.381 33.333 0.00 0.00 0.00 2.41
245 554 7.067981 GCTTAGATGATTTTCCTCCTTCATGTT 59.932 37.037 0.00 0.00 0.00 2.71
246 555 6.545298 GCTTAGATGATTTTCCTCCTTCATGT 59.455 38.462 0.00 0.00 0.00 3.21
247 556 6.771749 AGCTTAGATGATTTTCCTCCTTCATG 59.228 38.462 0.00 0.00 0.00 3.07
248 557 6.909076 AGCTTAGATGATTTTCCTCCTTCAT 58.091 36.000 0.00 0.00 0.00 2.57
249 558 6.319048 AGCTTAGATGATTTTCCTCCTTCA 57.681 37.500 0.00 0.00 0.00 3.02
250 559 7.275920 TGTAGCTTAGATGATTTTCCTCCTTC 58.724 38.462 0.00 0.00 0.00 3.46
251 560 7.200434 TGTAGCTTAGATGATTTTCCTCCTT 57.800 36.000 0.00 0.00 0.00 3.36
252 561 6.814954 TGTAGCTTAGATGATTTTCCTCCT 57.185 37.500 0.00 0.00 0.00 3.69
253 562 8.457238 AATTGTAGCTTAGATGATTTTCCTCC 57.543 34.615 0.00 0.00 0.00 4.30
254 563 9.336171 AGAATTGTAGCTTAGATGATTTTCCTC 57.664 33.333 0.00 0.00 0.00 3.71
255 564 9.336171 GAGAATTGTAGCTTAGATGATTTTCCT 57.664 33.333 0.00 0.00 0.00 3.36
256 565 9.336171 AGAGAATTGTAGCTTAGATGATTTTCC 57.664 33.333 0.00 0.00 0.00 3.13
264 573 9.825109 GGAAAGTTAGAGAATTGTAGCTTAGAT 57.175 33.333 0.00 0.00 0.00 1.98
265 574 9.036980 AGGAAAGTTAGAGAATTGTAGCTTAGA 57.963 33.333 0.00 0.00 0.00 2.10
266 575 9.308318 GAGGAAAGTTAGAGAATTGTAGCTTAG 57.692 37.037 0.00 0.00 0.00 2.18
267 576 8.258708 GGAGGAAAGTTAGAGAATTGTAGCTTA 58.741 37.037 0.00 0.00 0.00 3.09
268 577 7.037945 AGGAGGAAAGTTAGAGAATTGTAGCTT 60.038 37.037 0.00 0.00 0.00 3.74
269 578 6.442244 AGGAGGAAAGTTAGAGAATTGTAGCT 59.558 38.462 0.00 0.00 0.00 3.32
270 579 6.645306 AGGAGGAAAGTTAGAGAATTGTAGC 58.355 40.000 0.00 0.00 0.00 3.58
271 580 8.314751 TGAAGGAGGAAAGTTAGAGAATTGTAG 58.685 37.037 0.00 0.00 0.00 2.74
272 581 8.095169 GTGAAGGAGGAAAGTTAGAGAATTGTA 58.905 37.037 0.00 0.00 0.00 2.41
273 582 6.937465 GTGAAGGAGGAAAGTTAGAGAATTGT 59.063 38.462 0.00 0.00 0.00 2.71
274 583 7.164803 AGTGAAGGAGGAAAGTTAGAGAATTG 58.835 38.462 0.00 0.00 0.00 2.32
275 584 7.323052 AGTGAAGGAGGAAAGTTAGAGAATT 57.677 36.000 0.00 0.00 0.00 2.17
276 585 6.943899 AGTGAAGGAGGAAAGTTAGAGAAT 57.056 37.500 0.00 0.00 0.00 2.40
277 586 6.239629 GGAAGTGAAGGAGGAAAGTTAGAGAA 60.240 42.308 0.00 0.00 0.00 2.87
278 587 5.246429 GGAAGTGAAGGAGGAAAGTTAGAGA 59.754 44.000 0.00 0.00 0.00 3.10
279 588 5.012148 TGGAAGTGAAGGAGGAAAGTTAGAG 59.988 44.000 0.00 0.00 0.00 2.43
280 589 4.905456 TGGAAGTGAAGGAGGAAAGTTAGA 59.095 41.667 0.00 0.00 0.00 2.10
281 590 5.228945 TGGAAGTGAAGGAGGAAAGTTAG 57.771 43.478 0.00 0.00 0.00 2.34
282 591 5.843019 ATGGAAGTGAAGGAGGAAAGTTA 57.157 39.130 0.00 0.00 0.00 2.24
283 592 4.731313 ATGGAAGTGAAGGAGGAAAGTT 57.269 40.909 0.00 0.00 0.00 2.66
284 593 5.488919 TCATATGGAAGTGAAGGAGGAAAGT 59.511 40.000 2.13 0.00 0.00 2.66
285 594 5.994250 TCATATGGAAGTGAAGGAGGAAAG 58.006 41.667 2.13 0.00 0.00 2.62
286 595 6.581388 ATCATATGGAAGTGAAGGAGGAAA 57.419 37.500 2.13 0.00 0.00 3.13
287 596 6.581388 AATCATATGGAAGTGAAGGAGGAA 57.419 37.500 2.13 0.00 0.00 3.36
288 597 7.509546 GTTAATCATATGGAAGTGAAGGAGGA 58.490 38.462 2.13 0.00 0.00 3.71
289 598 6.425114 CGTTAATCATATGGAAGTGAAGGAGG 59.575 42.308 2.13 0.00 0.00 4.30
290 599 6.073548 GCGTTAATCATATGGAAGTGAAGGAG 60.074 42.308 2.13 0.00 0.00 3.69
291 600 5.758296 GCGTTAATCATATGGAAGTGAAGGA 59.242 40.000 2.13 0.00 0.00 3.36
292 601 5.760253 AGCGTTAATCATATGGAAGTGAAGG 59.240 40.000 2.13 0.00 0.00 3.46
293 602 6.851222 AGCGTTAATCATATGGAAGTGAAG 57.149 37.500 2.13 0.00 0.00 3.02
294 603 8.725405 TTTAGCGTTAATCATATGGAAGTGAA 57.275 30.769 2.13 0.00 0.00 3.18
295 604 8.725405 TTTTAGCGTTAATCATATGGAAGTGA 57.275 30.769 2.13 0.00 0.00 3.41
296 605 9.385902 CATTTTAGCGTTAATCATATGGAAGTG 57.614 33.333 2.13 0.00 0.00 3.16
297 606 9.337396 TCATTTTAGCGTTAATCATATGGAAGT 57.663 29.630 2.13 0.00 0.00 3.01
298 607 9.599322 GTCATTTTAGCGTTAATCATATGGAAG 57.401 33.333 2.13 0.00 0.00 3.46
299 608 9.337396 AGTCATTTTAGCGTTAATCATATGGAA 57.663 29.630 2.13 0.00 0.00 3.53
300 609 8.902540 AGTCATTTTAGCGTTAATCATATGGA 57.097 30.769 2.13 0.00 0.00 3.41
301 610 9.385902 CAAGTCATTTTAGCGTTAATCATATGG 57.614 33.333 2.13 0.00 0.00 2.74
305 614 9.722056 GATTCAAGTCATTTTAGCGTTAATCAT 57.278 29.630 0.00 0.00 0.00 2.45
306 615 8.726068 TGATTCAAGTCATTTTAGCGTTAATCA 58.274 29.630 0.00 0.00 0.00 2.57
307 616 9.554724 TTGATTCAAGTCATTTTAGCGTTAATC 57.445 29.630 0.00 0.00 0.00 1.75
309 618 9.906660 AATTGATTCAAGTCATTTTAGCGTTAA 57.093 25.926 5.21 0.00 0.00 2.01
310 619 9.906660 AAATTGATTCAAGTCATTTTAGCGTTA 57.093 25.926 5.21 0.00 32.79 3.18
311 620 8.702438 CAAATTGATTCAAGTCATTTTAGCGTT 58.298 29.630 5.21 0.00 32.79 4.84
312 621 7.148755 GCAAATTGATTCAAGTCATTTTAGCGT 60.149 33.333 5.21 0.00 32.79 5.07
313 622 7.148771 TGCAAATTGATTCAAGTCATTTTAGCG 60.149 33.333 5.21 0.00 33.85 4.26
314 623 8.020861 TGCAAATTGATTCAAGTCATTTTAGC 57.979 30.769 5.21 7.29 32.79 3.09
414 723 9.610705 TGTACACAGTTACTGTTGGTAAATAAA 57.389 29.630 16.06 0.00 42.59 1.40
415 724 9.610705 TTGTACACAGTTACTGTTGGTAAATAA 57.389 29.630 16.06 9.06 42.59 1.40
416 725 9.781633 ATTGTACACAGTTACTGTTGGTAAATA 57.218 29.630 16.06 5.61 42.59 1.40
417 726 8.685838 ATTGTACACAGTTACTGTTGGTAAAT 57.314 30.769 16.06 13.37 42.59 1.40
418 727 9.044150 GTATTGTACACAGTTACTGTTGGTAAA 57.956 33.333 16.06 8.35 42.59 2.01
419 728 7.656948 GGTATTGTACACAGTTACTGTTGGTAA 59.343 37.037 16.06 9.43 42.59 2.85
420 729 7.015487 AGGTATTGTACACAGTTACTGTTGGTA 59.985 37.037 16.06 12.73 42.59 3.25
421 730 5.993441 GGTATTGTACACAGTTACTGTTGGT 59.007 40.000 16.06 13.73 42.59 3.67
422 731 6.228258 AGGTATTGTACACAGTTACTGTTGG 58.772 40.000 16.06 8.24 42.59 3.77
423 732 8.086522 AGTAGGTATTGTACACAGTTACTGTTG 58.913 37.037 16.06 13.23 42.59 3.33
424 733 8.186709 AGTAGGTATTGTACACAGTTACTGTT 57.813 34.615 16.06 9.87 42.59 3.16
425 734 7.771927 AGTAGGTATTGTACACAGTTACTGT 57.228 36.000 12.76 12.76 46.51 3.55
447 756 9.525409 AGCGAACGTTGTATTATCTATTTAAGT 57.475 29.630 5.00 0.00 0.00 2.24
450 759 9.949174 TGTAGCGAACGTTGTATTATCTATTTA 57.051 29.630 5.00 0.00 0.00 1.40
451 760 8.861033 TGTAGCGAACGTTGTATTATCTATTT 57.139 30.769 5.00 0.00 0.00 1.40
452 761 8.133627 ACTGTAGCGAACGTTGTATTATCTATT 58.866 33.333 5.00 0.00 0.00 1.73
453 762 7.646314 ACTGTAGCGAACGTTGTATTATCTAT 58.354 34.615 5.00 0.00 0.00 1.98
454 763 7.019774 ACTGTAGCGAACGTTGTATTATCTA 57.980 36.000 5.00 0.00 0.00 1.98
455 764 5.888105 ACTGTAGCGAACGTTGTATTATCT 58.112 37.500 5.00 0.00 0.00 1.98
456 765 7.060403 GGATACTGTAGCGAACGTTGTATTATC 59.940 40.741 5.00 1.26 0.00 1.75
457 766 6.860023 GGATACTGTAGCGAACGTTGTATTAT 59.140 38.462 5.00 0.00 0.00 1.28
458 767 6.201517 GGATACTGTAGCGAACGTTGTATTA 58.798 40.000 5.00 0.00 0.00 0.98
459 768 5.039333 GGATACTGTAGCGAACGTTGTATT 58.961 41.667 5.00 0.00 0.00 1.89
460 769 4.604976 GGATACTGTAGCGAACGTTGTAT 58.395 43.478 5.00 5.15 0.00 2.29
461 770 3.485711 CGGATACTGTAGCGAACGTTGTA 60.486 47.826 5.00 0.00 0.00 2.41
462 771 2.730090 CGGATACTGTAGCGAACGTTGT 60.730 50.000 5.00 0.00 0.00 3.32
463 772 1.844357 CGGATACTGTAGCGAACGTTG 59.156 52.381 5.00 0.00 0.00 4.10
464 773 1.470098 ACGGATACTGTAGCGAACGTT 59.530 47.619 0.00 0.00 0.00 3.99
465 774 1.089920 ACGGATACTGTAGCGAACGT 58.910 50.000 0.00 0.00 0.00 3.99
466 775 1.063027 TCACGGATACTGTAGCGAACG 59.937 52.381 0.00 0.00 0.00 3.95
467 776 2.097142 AGTCACGGATACTGTAGCGAAC 59.903 50.000 0.00 0.00 0.00 3.95
468 777 2.362736 AGTCACGGATACTGTAGCGAA 58.637 47.619 0.00 0.00 0.00 4.70
469 778 2.034104 AGTCACGGATACTGTAGCGA 57.966 50.000 0.00 0.00 0.00 4.93
470 779 2.846039 AAGTCACGGATACTGTAGCG 57.154 50.000 0.00 0.00 0.00 4.26
471 780 4.745649 AGAAAAGTCACGGATACTGTAGC 58.254 43.478 0.00 0.00 0.00 3.58
472 781 7.653767 AAAAGAAAAGTCACGGATACTGTAG 57.346 36.000 0.00 0.00 0.00 2.74
474 783 6.937436 AAAAAGAAAAGTCACGGATACTGT 57.063 33.333 0.00 0.00 0.00 3.55
494 803 9.757227 ACAATGCAAGCTAGTGTAAAATAAAAA 57.243 25.926 0.00 0.00 0.00 1.94
497 806 8.181573 GCTACAATGCAAGCTAGTGTAAAATAA 58.818 33.333 0.75 0.00 35.80 1.40
498 807 7.693952 GCTACAATGCAAGCTAGTGTAAAATA 58.306 34.615 0.75 0.00 35.80 1.40
499 808 6.555315 GCTACAATGCAAGCTAGTGTAAAAT 58.445 36.000 0.75 0.00 35.80 1.82
500 809 5.938322 GCTACAATGCAAGCTAGTGTAAAA 58.062 37.500 0.75 0.00 35.80 1.52
501 810 5.545658 GCTACAATGCAAGCTAGTGTAAA 57.454 39.130 0.75 0.00 35.80 2.01
510 819 3.009723 TCACCTAAGCTACAATGCAAGC 58.990 45.455 0.00 0.00 39.08 4.01
511 820 4.256920 AGTCACCTAAGCTACAATGCAAG 58.743 43.478 0.00 0.00 34.99 4.01
512 821 4.286297 AGTCACCTAAGCTACAATGCAA 57.714 40.909 0.00 0.00 34.99 4.08
513 822 3.981071 AGTCACCTAAGCTACAATGCA 57.019 42.857 0.00 0.00 34.99 3.96
514 823 4.095036 GGAAAGTCACCTAAGCTACAATGC 59.905 45.833 0.00 0.00 0.00 3.56
515 824 5.491982 AGGAAAGTCACCTAAGCTACAATG 58.508 41.667 0.00 0.00 35.84 2.82
516 825 5.338463 GGAGGAAAGTCACCTAAGCTACAAT 60.338 44.000 0.00 0.00 37.93 2.71
517 826 4.020485 GGAGGAAAGTCACCTAAGCTACAA 60.020 45.833 0.00 0.00 37.93 2.41
518 827 3.514309 GGAGGAAAGTCACCTAAGCTACA 59.486 47.826 0.00 0.00 37.93 2.74
519 828 3.118702 GGGAGGAAAGTCACCTAAGCTAC 60.119 52.174 0.00 0.00 37.93 3.58
520 829 3.105283 GGGAGGAAAGTCACCTAAGCTA 58.895 50.000 0.00 0.00 37.93 3.32
521 830 1.909986 GGGAGGAAAGTCACCTAAGCT 59.090 52.381 0.00 0.00 37.93 3.74
522 831 1.628846 TGGGAGGAAAGTCACCTAAGC 59.371 52.381 0.00 0.00 37.93 3.09
523 832 3.264450 ACATGGGAGGAAAGTCACCTAAG 59.736 47.826 0.00 0.00 37.93 2.18
524 833 3.256704 ACATGGGAGGAAAGTCACCTAA 58.743 45.455 0.00 0.00 37.93 2.69
525 834 2.838202 GACATGGGAGGAAAGTCACCTA 59.162 50.000 0.00 0.00 37.93 3.08
526 835 1.630878 GACATGGGAGGAAAGTCACCT 59.369 52.381 0.00 0.00 40.80 4.00
527 836 1.351017 TGACATGGGAGGAAAGTCACC 59.649 52.381 0.00 0.00 34.59 4.02
528 837 2.303022 TCTGACATGGGAGGAAAGTCAC 59.697 50.000 0.00 0.00 35.57 3.67
529 838 2.568956 CTCTGACATGGGAGGAAAGTCA 59.431 50.000 0.00 0.00 37.61 3.41
530 839 3.258971 CTCTGACATGGGAGGAAAGTC 57.741 52.381 0.00 0.00 0.00 3.01
537 846 1.415659 GTGGATCCTCTGACATGGGAG 59.584 57.143 14.23 1.71 32.28 4.30
538 847 1.008815 AGTGGATCCTCTGACATGGGA 59.991 52.381 15.52 0.00 0.00 4.37
539 848 1.504912 AGTGGATCCTCTGACATGGG 58.495 55.000 15.52 0.00 0.00 4.00
540 849 2.158842 GGAAGTGGATCCTCTGACATGG 60.159 54.545 16.89 0.00 36.50 3.66
541 850 2.502947 TGGAAGTGGATCCTCTGACATG 59.497 50.000 16.89 0.00 40.35 3.21
542 851 2.503356 GTGGAAGTGGATCCTCTGACAT 59.497 50.000 16.89 1.22 40.35 3.06
543 852 1.902508 GTGGAAGTGGATCCTCTGACA 59.097 52.381 16.89 15.01 40.35 3.58
544 853 1.902508 TGTGGAAGTGGATCCTCTGAC 59.097 52.381 16.89 13.59 40.35 3.51
545 854 1.902508 GTGTGGAAGTGGATCCTCTGA 59.097 52.381 16.89 2.13 40.35 3.27
546 855 1.065854 GGTGTGGAAGTGGATCCTCTG 60.066 57.143 16.89 0.00 40.35 3.35
547 856 1.203364 AGGTGTGGAAGTGGATCCTCT 60.203 52.381 14.23 12.34 40.35 3.69
548 857 1.208293 GAGGTGTGGAAGTGGATCCTC 59.792 57.143 14.23 9.81 40.35 3.71
549 858 1.280457 GAGGTGTGGAAGTGGATCCT 58.720 55.000 14.23 0.00 40.35 3.24
550 859 0.108138 CGAGGTGTGGAAGTGGATCC 60.108 60.000 4.20 4.20 40.10 3.36
551 860 0.741221 GCGAGGTGTGGAAGTGGATC 60.741 60.000 0.00 0.00 0.00 3.36
552 861 1.296715 GCGAGGTGTGGAAGTGGAT 59.703 57.895 0.00 0.00 0.00 3.41
553 862 2.137528 TGCGAGGTGTGGAAGTGGA 61.138 57.895 0.00 0.00 0.00 4.02
554 863 1.961277 GTGCGAGGTGTGGAAGTGG 60.961 63.158 0.00 0.00 0.00 4.00
555 864 2.310233 CGTGCGAGGTGTGGAAGTG 61.310 63.158 0.00 0.00 0.00 3.16
556 865 2.029073 CGTGCGAGGTGTGGAAGT 59.971 61.111 0.00 0.00 0.00 3.01
557 866 2.507110 ATCCGTGCGAGGTGTGGAAG 62.507 60.000 0.00 0.00 31.42 3.46
558 867 2.107041 AATCCGTGCGAGGTGTGGAA 62.107 55.000 0.00 0.00 31.42 3.53
559 868 2.501223 GAATCCGTGCGAGGTGTGGA 62.501 60.000 0.00 0.00 0.00 4.02
560 869 2.047274 AATCCGTGCGAGGTGTGG 60.047 61.111 0.00 0.00 0.00 4.17
561 870 1.079819 AGAATCCGTGCGAGGTGTG 60.080 57.895 0.00 0.00 0.00 3.82
572 881 1.818060 TGGGTGAATTTGCAGAATCCG 59.182 47.619 0.00 0.00 0.00 4.18
578 887 0.523072 CCTCGTGGGTGAATTTGCAG 59.477 55.000 0.00 0.00 0.00 4.41
671 980 8.979534 AGACTTATATTTAGGAACGAAGGAAGT 58.020 33.333 0.00 0.00 0.00 3.01
672 981 9.819267 AAGACTTATATTTAGGAACGAAGGAAG 57.181 33.333 0.00 0.00 0.00 3.46
674 983 9.595823 CAAAGACTTATATTTAGGAACGAAGGA 57.404 33.333 0.00 0.00 0.00 3.36
675 984 8.827677 CCAAAGACTTATATTTAGGAACGAAGG 58.172 37.037 0.00 0.00 0.00 3.46
676 985 9.595823 TCCAAAGACTTATATTTAGGAACGAAG 57.404 33.333 0.00 0.00 0.00 3.79
677 986 9.595823 CTCCAAAGACTTATATTTAGGAACGAA 57.404 33.333 0.00 0.00 0.00 3.85
678 987 8.974238 TCTCCAAAGACTTATATTTAGGAACGA 58.026 33.333 0.00 0.00 0.00 3.85
679 988 9.250624 CTCTCCAAAGACTTATATTTAGGAACG 57.749 37.037 0.00 0.00 0.00 3.95
697 1006 9.958180 TGTGATTTATAGTGAAATCTCTCCAAA 57.042 29.630 9.56 0.00 43.40 3.28
702 1011 9.698309 CCGTATGTGATTTATAGTGAAATCTCT 57.302 33.333 9.56 0.00 43.40 3.10
703 1012 9.692749 TCCGTATGTGATTTATAGTGAAATCTC 57.307 33.333 9.56 7.06 43.40 2.75
706 1015 8.721478 GCATCCGTATGTGATTTATAGTGAAAT 58.279 33.333 0.00 0.00 35.38 2.17
707 1016 7.713073 TGCATCCGTATGTGATTTATAGTGAAA 59.287 33.333 0.00 0.00 35.38 2.69
708 1017 7.213678 TGCATCCGTATGTGATTTATAGTGAA 58.786 34.615 0.00 0.00 35.38 3.18
709 1018 6.754193 TGCATCCGTATGTGATTTATAGTGA 58.246 36.000 0.00 0.00 35.38 3.41
710 1019 7.118245 ACATGCATCCGTATGTGATTTATAGTG 59.882 37.037 0.00 0.00 45.46 2.74
711 1020 7.161404 ACATGCATCCGTATGTGATTTATAGT 58.839 34.615 0.00 0.00 45.46 2.12
712 1021 7.601073 ACATGCATCCGTATGTGATTTATAG 57.399 36.000 0.00 0.00 45.46 1.31
713 1022 8.527810 TCTACATGCATCCGTATGTGATTTATA 58.472 33.333 0.00 0.00 46.45 0.98
714 1023 7.386059 TCTACATGCATCCGTATGTGATTTAT 58.614 34.615 0.00 0.00 46.45 1.40
715 1024 6.754193 TCTACATGCATCCGTATGTGATTTA 58.246 36.000 0.00 0.00 46.45 1.40
716 1025 5.610398 TCTACATGCATCCGTATGTGATTT 58.390 37.500 0.00 0.00 46.45 2.17
717 1026 5.213891 TCTACATGCATCCGTATGTGATT 57.786 39.130 0.00 0.00 46.45 2.57
718 1027 4.871933 TCTACATGCATCCGTATGTGAT 57.128 40.909 0.00 0.00 46.45 3.06
719 1028 4.559153 CATCTACATGCATCCGTATGTGA 58.441 43.478 0.00 3.37 46.45 3.58
720 1029 4.916099 CATCTACATGCATCCGTATGTG 57.084 45.455 0.00 0.00 46.45 3.21
732 1041 8.877808 TCTACACTCTAAAATGCATCTACATG 57.122 34.615 0.00 0.00 0.00 3.21
734 1043 9.534565 GAATCTACACTCTAAAATGCATCTACA 57.465 33.333 0.00 0.00 0.00 2.74
735 1044 9.534565 TGAATCTACACTCTAAAATGCATCTAC 57.465 33.333 0.00 0.00 0.00 2.59
736 1045 9.534565 GTGAATCTACACTCTAAAATGCATCTA 57.465 33.333 0.00 0.00 37.73 1.98
737 1046 8.263640 AGTGAATCTACACTCTAAAATGCATCT 58.736 33.333 0.00 0.00 46.36 2.90
738 1047 8.430801 AGTGAATCTACACTCTAAAATGCATC 57.569 34.615 0.00 0.00 46.36 3.91
751 1060 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
752 1061 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
753 1062 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
754 1063 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
755 1064 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
756 1065 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
757 1066 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
758 1067 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
759 1068 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
760 1069 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
761 1070 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
762 1071 4.508124 GGACTACATACGGAGCAAAATGAG 59.492 45.833 0.00 0.00 0.00 2.90
763 1072 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
764 1073 4.188462 TGGACTACATACGGAGCAAAATG 58.812 43.478 0.00 0.00 0.00 2.32
765 1074 4.481368 TGGACTACATACGGAGCAAAAT 57.519 40.909 0.00 0.00 0.00 1.82
766 1075 3.965379 TGGACTACATACGGAGCAAAA 57.035 42.857 0.00 0.00 0.00 2.44
767 1076 4.647853 ACTATGGACTACATACGGAGCAAA 59.352 41.667 0.00 0.00 41.03 3.68
768 1077 4.037565 CACTATGGACTACATACGGAGCAA 59.962 45.833 0.00 0.00 41.03 3.91
769 1078 3.568430 CACTATGGACTACATACGGAGCA 59.432 47.826 0.00 0.00 41.03 4.26
770 1079 3.819337 TCACTATGGACTACATACGGAGC 59.181 47.826 0.00 0.00 41.03 4.70
771 1080 6.387041 TTTCACTATGGACTACATACGGAG 57.613 41.667 0.00 0.00 41.03 4.63
772 1081 6.776116 AGATTTCACTATGGACTACATACGGA 59.224 38.462 0.00 0.00 41.03 4.69
773 1082 6.982852 AGATTTCACTATGGACTACATACGG 58.017 40.000 0.00 0.00 41.03 4.02
774 1083 7.877003 AGAGATTTCACTATGGACTACATACG 58.123 38.462 0.00 0.00 41.03 3.06
775 1084 8.301002 GGAGAGATTTCACTATGGACTACATAC 58.699 40.741 0.00 0.00 41.03 2.39
776 1085 8.004801 TGGAGAGATTTCACTATGGACTACATA 58.995 37.037 0.00 0.00 41.03 2.29
777 1086 6.841229 TGGAGAGATTTCACTATGGACTACAT 59.159 38.462 0.00 0.00 43.68 2.29
778 1087 6.194967 TGGAGAGATTTCACTATGGACTACA 58.805 40.000 0.00 0.00 0.00 2.74
779 1088 6.716934 TGGAGAGATTTCACTATGGACTAC 57.283 41.667 0.00 0.00 0.00 2.73
780 1089 7.619698 TCTTTGGAGAGATTTCACTATGGACTA 59.380 37.037 0.00 0.00 0.00 2.59
781 1090 6.441924 TCTTTGGAGAGATTTCACTATGGACT 59.558 38.462 0.00 0.00 0.00 3.85
782 1091 6.536941 GTCTTTGGAGAGATTTCACTATGGAC 59.463 42.308 0.00 0.00 31.07 4.02
783 1092 6.441924 AGTCTTTGGAGAGATTTCACTATGGA 59.558 38.462 0.00 0.00 31.07 3.41
784 1093 6.648192 AGTCTTTGGAGAGATTTCACTATGG 58.352 40.000 0.00 0.00 31.07 2.74
785 1094 9.829507 ATAAGTCTTTGGAGAGATTTCACTATG 57.170 33.333 0.00 0.00 31.07 2.23
795 1104 8.204836 GCACCTAAATATAAGTCTTTGGAGAGA 58.795 37.037 0.00 0.00 31.07 3.10
796 1105 8.207545 AGCACCTAAATATAAGTCTTTGGAGAG 58.792 37.037 0.00 0.00 31.07 3.20
797 1106 8.090788 AGCACCTAAATATAAGTCTTTGGAGA 57.909 34.615 0.00 0.00 0.00 3.71
798 1107 7.442666 GGAGCACCTAAATATAAGTCTTTGGAG 59.557 40.741 0.00 0.00 0.00 3.86
799 1108 7.092623 TGGAGCACCTAAATATAAGTCTTTGGA 60.093 37.037 0.71 0.00 37.04 3.53
800 1109 7.054124 TGGAGCACCTAAATATAAGTCTTTGG 58.946 38.462 0.71 0.00 37.04 3.28
801 1110 8.682936 ATGGAGCACCTAAATATAAGTCTTTG 57.317 34.615 0.71 0.00 37.04 2.77
803 1112 9.950496 CATATGGAGCACCTAAATATAAGTCTT 57.050 33.333 0.71 0.00 37.04 3.01
804 1113 9.105844 ACATATGGAGCACCTAAATATAAGTCT 57.894 33.333 7.80 0.00 37.04 3.24
809 1118 8.978472 GGACTACATATGGAGCACCTAAATATA 58.022 37.037 15.30 0.00 37.04 0.86
810 1119 7.457852 TGGACTACATATGGAGCACCTAAATAT 59.542 37.037 23.59 1.26 37.04 1.28
811 1120 6.785466 TGGACTACATATGGAGCACCTAAATA 59.215 38.462 23.59 8.26 37.04 1.40
812 1121 5.606749 TGGACTACATATGGAGCACCTAAAT 59.393 40.000 23.59 2.52 37.04 1.40
813 1122 4.966168 TGGACTACATATGGAGCACCTAAA 59.034 41.667 23.59 8.80 37.04 1.85
814 1123 4.552674 TGGACTACATATGGAGCACCTAA 58.447 43.478 23.59 9.33 37.04 2.69
815 1124 4.193240 TGGACTACATATGGAGCACCTA 57.807 45.455 23.59 12.93 37.04 3.08
816 1125 3.046283 TGGACTACATATGGAGCACCT 57.954 47.619 23.59 4.75 37.04 4.00
817 1126 4.528596 ACTATGGACTACATATGGAGCACC 59.471 45.833 15.30 17.66 41.07 5.01
818 1127 5.243954 TCACTATGGACTACATATGGAGCAC 59.756 44.000 15.30 8.56 41.07 4.40
819 1128 5.393866 TCACTATGGACTACATATGGAGCA 58.606 41.667 15.30 6.30 41.07 4.26
820 1129 5.984695 TCACTATGGACTACATATGGAGC 57.015 43.478 15.30 7.75 41.07 4.70
821 1130 8.811017 AGATTTCACTATGGACTACATATGGAG 58.189 37.037 13.77 13.77 41.07 3.86
822 1131 8.727100 AGATTTCACTATGGACTACATATGGA 57.273 34.615 7.80 0.00 41.07 3.41
823 1132 8.811017 AGAGATTTCACTATGGACTACATATGG 58.189 37.037 7.80 0.00 41.07 2.74
826 1135 9.421399 TGAAGAGATTTCACTATGGACTACATA 57.579 33.333 0.00 0.00 41.03 2.29
827 1136 8.311395 TGAAGAGATTTCACTATGGACTACAT 57.689 34.615 0.00 0.00 43.68 2.29
828 1137 7.718334 TGAAGAGATTTCACTATGGACTACA 57.282 36.000 0.00 0.00 0.00 2.74
829 1138 9.092876 CTTTGAAGAGATTTCACTATGGACTAC 57.907 37.037 0.00 0.00 0.00 2.73
830 1139 9.035890 TCTTTGAAGAGATTTCACTATGGACTA 57.964 33.333 0.00 0.00 0.00 2.59
831 1140 7.821846 GTCTTTGAAGAGATTTCACTATGGACT 59.178 37.037 0.00 0.00 35.32 3.85
832 1141 7.821846 AGTCTTTGAAGAGATTTCACTATGGAC 59.178 37.037 0.00 0.00 35.32 4.02
833 1142 7.911651 AGTCTTTGAAGAGATTTCACTATGGA 58.088 34.615 0.00 0.00 35.32 3.41
834 1143 8.558973 AAGTCTTTGAAGAGATTTCACTATGG 57.441 34.615 0.00 0.00 35.32 2.74
850 1159 8.705594 CCTCTGTCCCTAAATATAAGTCTTTGA 58.294 37.037 0.00 0.00 0.00 2.69
851 1160 7.934120 CCCTCTGTCCCTAAATATAAGTCTTTG 59.066 40.741 0.00 0.00 0.00 2.77
852 1161 7.849904 TCCCTCTGTCCCTAAATATAAGTCTTT 59.150 37.037 0.00 0.00 0.00 2.52
853 1162 7.371043 TCCCTCTGTCCCTAAATATAAGTCTT 58.629 38.462 0.00 0.00 0.00 3.01
854 1163 6.935036 TCCCTCTGTCCCTAAATATAAGTCT 58.065 40.000 0.00 0.00 0.00 3.24
855 1164 6.783482 ACTCCCTCTGTCCCTAAATATAAGTC 59.217 42.308 0.00 0.00 0.00 3.01
856 1165 6.694611 ACTCCCTCTGTCCCTAAATATAAGT 58.305 40.000 0.00 0.00 0.00 2.24
857 1166 7.951245 ACTACTCCCTCTGTCCCTAAATATAAG 59.049 40.741 0.00 0.00 0.00 1.73
858 1167 7.834046 ACTACTCCCTCTGTCCCTAAATATAA 58.166 38.462 0.00 0.00 0.00 0.98
859 1168 7.417811 ACTACTCCCTCTGTCCCTAAATATA 57.582 40.000 0.00 0.00 0.00 0.86
860 1169 6.296435 ACTACTCCCTCTGTCCCTAAATAT 57.704 41.667 0.00 0.00 0.00 1.28
861 1170 5.745988 ACTACTCCCTCTGTCCCTAAATA 57.254 43.478 0.00 0.00 0.00 1.40
862 1171 4.628661 ACTACTCCCTCTGTCCCTAAAT 57.371 45.455 0.00 0.00 0.00 1.40
863 1172 4.045590 AGAACTACTCCCTCTGTCCCTAAA 59.954 45.833 0.00 0.00 0.00 1.85
864 1173 3.596956 AGAACTACTCCCTCTGTCCCTAA 59.403 47.826 0.00 0.00 0.00 2.69
865 1174 3.053544 CAGAACTACTCCCTCTGTCCCTA 60.054 52.174 0.00 0.00 33.39 3.53
866 1175 2.004589 AGAACTACTCCCTCTGTCCCT 58.995 52.381 0.00 0.00 0.00 4.20
867 1176 2.104170 CAGAACTACTCCCTCTGTCCC 58.896 57.143 0.00 0.00 33.39 4.46
868 1177 2.810164 ACAGAACTACTCCCTCTGTCC 58.190 52.381 0.00 0.00 45.12 4.02
871 1180 2.808919 TGGACAGAACTACTCCCTCTG 58.191 52.381 0.00 0.00 41.93 3.35
872 1181 3.436243 CTTGGACAGAACTACTCCCTCT 58.564 50.000 0.00 0.00 0.00 3.69
873 1182 2.093921 GCTTGGACAGAACTACTCCCTC 60.094 54.545 0.00 0.00 0.00 4.30
874 1183 1.903183 GCTTGGACAGAACTACTCCCT 59.097 52.381 0.00 0.00 0.00 4.20
875 1184 1.623811 TGCTTGGACAGAACTACTCCC 59.376 52.381 0.00 0.00 0.00 4.30
876 1185 3.402628 TTGCTTGGACAGAACTACTCC 57.597 47.619 0.00 0.00 0.00 3.85
877 1186 5.106515 GGAAATTGCTTGGACAGAACTACTC 60.107 44.000 0.00 0.00 0.00 2.59
878 1187 4.762251 GGAAATTGCTTGGACAGAACTACT 59.238 41.667 0.00 0.00 0.00 2.57
879 1188 4.082733 GGGAAATTGCTTGGACAGAACTAC 60.083 45.833 0.00 0.00 0.00 2.73
953 1264 3.985925 GTGGAGCTCTCTTTTGCAATTTG 59.014 43.478 14.64 0.00 0.00 2.32
980 1291 2.711922 GCTCGTCACGGATGGGAGT 61.712 63.158 0.00 0.00 32.52 3.85
1231 1545 4.021925 GGCGCAGAGGAAGGTGGT 62.022 66.667 10.83 0.00 0.00 4.16
1238 1552 2.364186 TGATGGAGGCGCAGAGGA 60.364 61.111 10.83 0.00 0.00 3.71
1314 1629 2.493278 CGCCAGGAATTCAGACCAAATT 59.507 45.455 7.93 0.00 0.00 1.82
1315 1630 2.094675 CGCCAGGAATTCAGACCAAAT 58.905 47.619 7.93 0.00 0.00 2.32
1495 1834 4.760047 ATGGTGGCGTCGACCTGC 62.760 66.667 10.58 8.51 34.26 4.85
1501 1840 4.873129 CCCTCGATGGTGGCGTCG 62.873 72.222 0.00 0.00 39.11 5.12
1531 1870 0.178068 TCCGGTAAGCATTCCTCTGC 59.822 55.000 0.00 0.00 42.62 4.26
1610 1949 1.131504 TGAACTCAACAACCGCACAAC 59.868 47.619 0.00 0.00 0.00 3.32
1617 1956 7.595311 AGAAAACAATTTGAACTCAACAACC 57.405 32.000 2.79 0.00 35.28 3.77
1651 1990 7.555554 ACATAAGCTCAGCTCTCATGTAAATTT 59.444 33.333 16.17 0.00 38.25 1.82
1666 2005 3.359194 AGCGCAGACATAAGCTCAG 57.641 52.632 11.47 0.00 34.48 3.35
1712 2063 8.050778 TGAGTAAAACATCCGCAGATTTTTAT 57.949 30.769 10.49 0.78 32.47 1.40
1730 2082 9.624697 GAAACTGCAACATCATAAATGAGTAAA 57.375 29.630 0.00 0.00 40.64 2.01
1798 2150 3.412386 ACATAACAGTGAGAAGTTGGCC 58.588 45.455 0.00 0.00 0.00 5.36
1799 2151 3.123621 CGACATAACAGTGAGAAGTTGGC 59.876 47.826 0.00 0.00 0.00 4.52
1811 2523 3.684305 TGCCTGTGAAATCGACATAACAG 59.316 43.478 9.04 9.04 35.82 3.16
1821 2859 4.261197 GGATCGGTTAATGCCTGTGAAATC 60.261 45.833 0.00 0.00 0.00 2.17
1830 2868 1.680338 AAGCTGGATCGGTTAATGCC 58.320 50.000 0.00 0.00 0.00 4.40
1838 2876 1.737793 GTTGTACCAAAGCTGGATCGG 59.262 52.381 0.00 0.00 46.92 4.18
1840 2878 5.392057 GCTAAAGTTGTACCAAAGCTGGATC 60.392 44.000 0.00 0.00 46.92 3.36
1841 2879 4.459337 GCTAAAGTTGTACCAAAGCTGGAT 59.541 41.667 0.00 0.00 46.92 3.41
1845 2883 7.703058 ATATTGCTAAAGTTGTACCAAAGCT 57.297 32.000 0.00 0.00 0.00 3.74
1879 3167 3.058708 CAGTTCGCATCAACTGTTCATGT 60.059 43.478 6.28 0.00 45.66 3.21
1904 3194 7.987458 TGGTACTTGCTCCTTAAGATTATTCTG 59.013 37.037 3.36 0.00 30.72 3.02
1919 3209 2.072298 CACTGAAGCTGGTACTTGCTC 58.928 52.381 12.13 7.81 37.78 4.26
1921 3211 0.519077 GCACTGAAGCTGGTACTTGC 59.481 55.000 0.00 0.00 0.00 4.01
1971 3261 6.239036 GCTGTTTAATATCCTCCCATGTTTCC 60.239 42.308 0.00 0.00 0.00 3.13
2174 3465 5.426504 CTCTCTGATTTCCATGCTTGTACT 58.573 41.667 0.00 0.00 0.00 2.73
2180 3471 3.280295 CAAGCTCTCTGATTTCCATGCT 58.720 45.455 0.00 0.00 0.00 3.79
2209 3500 5.239525 CCCAGCTCCTTTTAATCTATTTCCG 59.760 44.000 0.00 0.00 0.00 4.30
2249 3547 0.742990 CGCGGCACTCCCTTATCAAA 60.743 55.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.