Multiple sequence alignment - TraesCS1B01G186100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G186100 chr1B 100.000 4083 0 0 1 4083 332809250 332805168 0.000000e+00 7540
1 TraesCS1B01G186100 chr1D 93.329 3463 157 38 537 3952 241235281 241238716 0.000000e+00 5048
2 TraesCS1B01G186100 chr1D 87.791 516 43 9 1 503 241234773 241235281 1.640000e-163 586
3 TraesCS1B01G186100 chr1A 92.345 2051 79 26 537 2533 306117703 306119729 0.000000e+00 2846
4 TraesCS1B01G186100 chr1A 94.705 1341 47 10 2561 3880 306119729 306121066 0.000000e+00 2061
5 TraesCS1B01G186100 chr1A 88.538 253 24 3 251 503 306117456 306117703 6.630000e-78 302
6 TraesCS1B01G186100 chr1A 83.594 256 29 6 1 252 306116844 306117090 1.140000e-55 228
7 TraesCS1B01G186100 chr1A 93.684 95 6 0 3201 3295 498694264 498694170 4.250000e-30 143
8 TraesCS1B01G186100 chrUn 93.684 95 6 0 3201 3295 380590999 380590905 4.250000e-30 143
9 TraesCS1B01G186100 chrUn 93.684 95 6 0 3201 3295 395675553 395675459 4.250000e-30 143
10 TraesCS1B01G186100 chrUn 93.684 95 6 0 3201 3295 453336062 453335968 4.250000e-30 143
11 TraesCS1B01G186100 chr7D 93.684 95 6 0 3201 3295 203496964 203497058 4.250000e-30 143
12 TraesCS1B01G186100 chr6D 93.684 95 6 0 3201 3295 124514489 124514583 4.250000e-30 143
13 TraesCS1B01G186100 chr4D 93.684 95 6 0 3201 3295 123332435 123332529 4.250000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G186100 chr1B 332805168 332809250 4082 True 7540.00 7540 100.0000 1 4083 1 chr1B.!!$R1 4082
1 TraesCS1B01G186100 chr1D 241234773 241238716 3943 False 2817.00 5048 90.5600 1 3952 2 chr1D.!!$F1 3951
2 TraesCS1B01G186100 chr1A 306116844 306121066 4222 False 1359.25 2846 89.7955 1 3880 4 chr1A.!!$F1 3879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 194 0.178068 CGGGATCCGGTTGATTCTGT 59.822 55.0 11.10 0.00 44.15 3.41 F
1372 1803 0.250727 CTCCTCCCCTCTCTAGAGCG 60.251 65.0 15.35 8.94 40.75 5.03 F
2387 2829 0.036306 TCCCTTCCTTTTCAGTCGGC 59.964 55.0 0.00 0.00 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2062 2504 1.316706 GCTGAGCTCTCCTACGGTGT 61.317 60.0 16.19 0.0 0.00 4.16 R
2877 3345 0.033504 GACAGGAACGCCAGTCTTCA 59.966 55.0 0.00 0.0 44.71 3.02 R
4044 4526 0.033109 GCAGGGAAGGTAAAGCCCAT 60.033 55.0 0.00 0.0 44.55 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 8.631480 TTCCAAGGTTTTATTTAGGAGTCTTC 57.369 34.615 0.00 0.00 0.00 2.87
62 64 5.286267 AGGAGTCTTCGAGTTTGGTTTTA 57.714 39.130 0.00 0.00 0.00 1.52
68 70 5.295045 GTCTTCGAGTTTGGTTTTAGGACAA 59.705 40.000 0.00 0.00 0.00 3.18
70 72 4.515361 TCGAGTTTGGTTTTAGGACAACA 58.485 39.130 0.00 0.00 0.00 3.33
83 88 0.595095 GACAACAAGGCTGCCTTCTG 59.405 55.000 30.24 28.26 42.67 3.02
89 94 0.324091 AAGGCTGCCTTCTGGGAATG 60.324 55.000 27.70 0.00 40.17 2.67
94 99 2.295885 CTGCCTTCTGGGAATGATGTC 58.704 52.381 0.00 0.00 37.23 3.06
112 117 2.275318 GTCCTCCTCGCTCTTTCATTG 58.725 52.381 0.00 0.00 0.00 2.82
116 121 2.675348 CTCCTCGCTCTTTCATTGTTCC 59.325 50.000 0.00 0.00 0.00 3.62
121 126 2.223144 CGCTCTTTCATTGTTCCGTTGA 59.777 45.455 0.00 0.00 0.00 3.18
189 194 0.178068 CGGGATCCGGTTGATTCTGT 59.822 55.000 11.10 0.00 44.15 3.41
198 203 2.224079 CGGTTGATTCTGTGTTCCAGTG 59.776 50.000 0.00 0.00 42.19 3.66
234 239 1.606350 GCTGACGTTCGTGGTCTTCG 61.606 60.000 1.74 0.00 35.45 3.79
244 249 1.937899 CGTGGTCTTCGGAGTTTTTGT 59.062 47.619 0.00 0.00 0.00 2.83
323 695 6.479990 TCCTAGTATGCATCGATGACTTTTTG 59.520 38.462 29.20 12.36 0.00 2.44
334 706 4.499040 CGATGACTTTTTGTTCGTTGCTTT 59.501 37.500 0.00 0.00 0.00 3.51
413 795 5.384063 CATCGAGTTATGCTCATACCTCT 57.616 43.478 11.08 2.19 44.33 3.69
449 831 1.630878 AGGAAGAAGATTTCGGCACCT 59.369 47.619 0.00 0.00 34.02 4.00
456 838 4.524328 AGAAGATTTCGGCACCTCAAAATT 59.476 37.500 0.00 0.00 34.02 1.82
497 879 4.141228 TCTGGGTGGGTGTGTTTGTAAATA 60.141 41.667 0.00 0.00 0.00 1.40
502 884 5.010213 GGTGGGTGTGTTTGTAAATACATGT 59.990 40.000 2.69 2.69 41.09 3.21
503 885 6.461788 GGTGGGTGTGTTTGTAAATACATGTT 60.462 38.462 2.30 0.00 41.09 2.71
504 886 6.981559 GTGGGTGTGTTTGTAAATACATGTTT 59.018 34.615 2.30 0.00 41.09 2.83
505 887 7.492994 GTGGGTGTGTTTGTAAATACATGTTTT 59.507 33.333 2.30 7.40 41.09 2.43
506 888 8.041323 TGGGTGTGTTTGTAAATACATGTTTTT 58.959 29.630 16.78 16.78 41.09 1.94
531 913 8.528044 TTTTAGGGAAGTTTGTAAAGACATGT 57.472 30.769 0.00 0.00 34.86 3.21
532 914 7.504924 TTAGGGAAGTTTGTAAAGACATGTG 57.495 36.000 1.15 0.00 34.86 3.21
533 915 5.690865 AGGGAAGTTTGTAAAGACATGTGA 58.309 37.500 1.15 0.00 34.86 3.58
534 916 5.531287 AGGGAAGTTTGTAAAGACATGTGAC 59.469 40.000 1.15 0.00 34.86 3.67
535 917 5.298276 GGGAAGTTTGTAAAGACATGTGACA 59.702 40.000 1.15 0.00 34.86 3.58
560 942 7.446106 TGACACTTAATATATGGTCTTGGGT 57.554 36.000 0.00 0.00 0.00 4.51
605 990 2.472414 TAAAGCGAACCGGGCCACAT 62.472 55.000 6.32 0.00 0.00 3.21
896 1298 2.367894 TCAGCCAATGATCTAGAGCCTG 59.632 50.000 5.36 5.28 31.12 4.85
952 1354 4.477975 CCGGTCACCGTCTCGCTC 62.478 72.222 16.87 0.00 46.80 5.03
1111 1542 4.162690 CCTCCGGAGAAAGCCCCG 62.163 72.222 33.39 9.44 44.94 5.73
1187 1618 4.015406 CAGTGGTGGCTGGCGGTA 62.015 66.667 0.00 0.00 33.11 4.02
1195 1626 0.397187 TGGCTGGCGGTAGTGTAAAA 59.603 50.000 0.00 0.00 0.00 1.52
1197 1628 1.084289 GCTGGCGGTAGTGTAAAAGG 58.916 55.000 0.00 0.00 0.00 3.11
1294 1725 2.035237 TTGTCAGGTCGGGTGTCACC 62.035 60.000 14.13 14.13 37.60 4.02
1372 1803 0.250727 CTCCTCCCCTCTCTAGAGCG 60.251 65.000 15.35 8.94 40.75 5.03
1392 1823 4.215965 GCGAAATGCGTTGAACTTCTTAA 58.784 39.130 0.00 0.00 43.41 1.85
1555 1988 9.294030 GATAAACCAATAATGCAGAAACTCAAG 57.706 33.333 0.00 0.00 0.00 3.02
1610 2043 7.455008 GGACCAGAGGATAGGATTTGATACTTA 59.545 40.741 0.00 0.00 0.00 2.24
1615 2048 9.453830 AGAGGATAGGATTTGATACTTACCTTT 57.546 33.333 0.00 0.00 31.06 3.11
1985 2427 3.827817 TCAGAGGGGTCTTCTTCTACA 57.172 47.619 0.00 0.00 0.00 2.74
2062 2504 1.939934 CTTGTGCTCTTGTTTGACCGA 59.060 47.619 0.00 0.00 0.00 4.69
2108 2550 6.796785 ATATTGCAAAGATTTGGGCTACTT 57.203 33.333 1.71 0.00 38.57 2.24
2119 2561 3.857157 TGGGCTACTTTGACAGTTTCT 57.143 42.857 0.00 0.00 36.88 2.52
2174 2616 4.767928 AGAATCTACCTCCCAATAGTAGCG 59.232 45.833 0.00 0.00 34.70 4.26
2326 2768 3.325425 TCTTGGGTGTCATTCCTTTACGA 59.675 43.478 0.00 0.00 0.00 3.43
2380 2822 2.294449 AGCCTTGTCCCTTCCTTTTC 57.706 50.000 0.00 0.00 0.00 2.29
2381 2823 1.499007 AGCCTTGTCCCTTCCTTTTCA 59.501 47.619 0.00 0.00 0.00 2.69
2382 2824 1.889170 GCCTTGTCCCTTCCTTTTCAG 59.111 52.381 0.00 0.00 0.00 3.02
2383 2825 2.753168 GCCTTGTCCCTTCCTTTTCAGT 60.753 50.000 0.00 0.00 0.00 3.41
2384 2826 3.149981 CCTTGTCCCTTCCTTTTCAGTC 58.850 50.000 0.00 0.00 0.00 3.51
2385 2827 2.543777 TGTCCCTTCCTTTTCAGTCG 57.456 50.000 0.00 0.00 0.00 4.18
2387 2829 0.036306 TCCCTTCCTTTTCAGTCGGC 59.964 55.000 0.00 0.00 0.00 5.54
2388 2830 0.036875 CCCTTCCTTTTCAGTCGGCT 59.963 55.000 0.00 0.00 0.00 5.52
2389 2831 1.443802 CCTTCCTTTTCAGTCGGCTC 58.556 55.000 0.00 0.00 0.00 4.70
2390 2832 1.270839 CCTTCCTTTTCAGTCGGCTCA 60.271 52.381 0.00 0.00 0.00 4.26
2391 2833 2.072298 CTTCCTTTTCAGTCGGCTCAG 58.928 52.381 0.00 0.00 0.00 3.35
2460 2903 1.757682 TTGTGCCACCGAAGAAGTTT 58.242 45.000 0.00 0.00 0.00 2.66
2469 2912 4.684242 CCACCGAAGAAGTTTTTATTTGGC 59.316 41.667 1.78 0.00 41.04 4.52
2549 2992 2.158682 TGCATACGCCCAAACCTGATAT 60.159 45.455 0.00 0.00 37.32 1.63
2552 2995 0.916086 ACGCCCAAACCTGATATCCA 59.084 50.000 0.00 0.00 0.00 3.41
2557 3005 4.141959 CGCCCAAACCTGATATCCAATTTT 60.142 41.667 0.00 0.00 0.00 1.82
2642 3090 1.955778 CCACTTTGCACTCCATGTTGA 59.044 47.619 0.00 0.00 0.00 3.18
2697 3145 4.035909 GTCTTAAACGGTGTGTGGATTTGT 59.964 41.667 0.00 0.00 0.00 2.83
2735 3183 5.416013 GTCTGTATTTTTCTTTCCAGAGGGG 59.584 44.000 0.00 0.00 38.37 4.79
2813 3261 9.944376 ATGTGATTTTACTCTTGTGTGTACTAT 57.056 29.630 0.00 0.00 0.00 2.12
2822 3270 8.294954 ACTCTTGTGTGTACTATGCTATTAGT 57.705 34.615 0.00 0.00 36.43 2.24
2823 3271 8.191446 ACTCTTGTGTGTACTATGCTATTAGTG 58.809 37.037 0.00 0.00 34.35 2.74
2875 3343 1.469940 CGAGGAGCATTTAGTGTCGCT 60.470 52.381 0.00 0.00 37.44 4.93
2877 3345 1.276421 AGGAGCATTTAGTGTCGCTGT 59.724 47.619 0.00 0.00 34.12 4.40
3023 3491 6.837568 AGGGAATGATGCAGAGAAATTATGTT 59.162 34.615 0.00 0.00 0.00 2.71
3111 3579 8.893563 AAGTGGGTGATTTTTCCTATTCAATA 57.106 30.769 0.00 0.00 0.00 1.90
3173 3641 6.958767 AGGCAAAGATAGTTTACAGGTACAT 58.041 36.000 0.00 0.00 0.00 2.29
3320 3797 7.066307 TCATGTAGCATAATGGTATGACTGT 57.934 36.000 0.00 0.00 39.72 3.55
3442 3919 0.241481 GGTGTGAGACGAGTGTCCTC 59.759 60.000 0.00 0.00 46.74 3.71
3500 3977 6.870439 GTGGAGGAAATACTTGTAAGTACGTT 59.130 38.462 6.63 4.84 43.67 3.99
3502 3979 7.599998 TGGAGGAAATACTTGTAAGTACGTTTC 59.400 37.037 15.75 15.75 43.67 2.78
3504 3981 9.846248 GAGGAAATACTTGTAAGTACGTTTCTA 57.154 33.333 19.73 0.00 43.67 2.10
3644 4123 3.443681 ACTTGTGCTTGTTAGTTGCTGTT 59.556 39.130 0.00 0.00 0.00 3.16
3755 4235 2.350522 AGATGTGATGTGGCGAAGAAC 58.649 47.619 0.00 0.00 0.00 3.01
3760 4240 2.094894 GTGATGTGGCGAAGAACTCATG 59.905 50.000 0.00 0.00 0.00 3.07
3791 4271 9.149225 CTTAGATGATCTTGCCATATTCTACAC 57.851 37.037 0.00 0.00 0.00 2.90
3869 4351 6.014584 GTGATTTCCTTTTGGGACTTGGTAAT 60.015 38.462 0.00 0.00 45.03 1.89
3880 4362 4.222810 GGGACTTGGTAATGATGCCTTTTT 59.777 41.667 0.00 0.00 31.58 1.94
3906 4388 2.287829 CCCCCGTATATCAGGAGGC 58.712 63.158 0.00 0.00 0.00 4.70
3907 4389 0.544357 CCCCCGTATATCAGGAGGCA 60.544 60.000 0.00 0.00 0.00 4.75
3910 4392 2.093447 CCCCGTATATCAGGAGGCAATC 60.093 54.545 0.00 0.00 0.00 2.67
3911 4393 2.417379 CCCGTATATCAGGAGGCAATCG 60.417 54.545 0.00 0.00 0.00 3.34
3912 4394 2.492088 CCGTATATCAGGAGGCAATCGA 59.508 50.000 0.00 0.00 0.00 3.59
3914 4396 4.382040 CCGTATATCAGGAGGCAATCGAAT 60.382 45.833 0.00 0.00 0.00 3.34
3927 4409 3.369756 GCAATCGAATGTAACCGAGTTCA 59.630 43.478 1.83 0.00 38.25 3.18
3933 4415 3.678056 ATGTAACCGAGTTCAGCTTCA 57.322 42.857 0.00 0.00 0.00 3.02
3938 4420 1.373497 CGAGTTCAGCTTCACGCCT 60.373 57.895 0.00 0.00 40.39 5.52
3943 4425 0.966179 TTCAGCTTCACGCCTAGACA 59.034 50.000 0.00 0.00 40.39 3.41
3966 4448 8.674263 ACATTCTTGTCTAGATCAATTCCATC 57.326 34.615 0.00 0.00 31.54 3.51
3967 4449 7.718753 ACATTCTTGTCTAGATCAATTCCATCC 59.281 37.037 0.00 0.00 31.54 3.51
3968 4450 7.443302 TTCTTGTCTAGATCAATTCCATCCT 57.557 36.000 0.00 0.00 31.54 3.24
3969 4451 6.824553 TCTTGTCTAGATCAATTCCATCCTG 58.175 40.000 0.00 0.00 0.00 3.86
3970 4452 6.612863 TCTTGTCTAGATCAATTCCATCCTGA 59.387 38.462 0.00 0.00 0.00 3.86
3971 4453 6.166984 TGTCTAGATCAATTCCATCCTGAC 57.833 41.667 0.00 0.00 0.00 3.51
3972 4454 5.901853 TGTCTAGATCAATTCCATCCTGACT 59.098 40.000 0.00 0.00 30.48 3.41
3973 4455 6.041409 TGTCTAGATCAATTCCATCCTGACTC 59.959 42.308 0.00 0.00 30.48 3.36
3974 4456 4.333913 AGATCAATTCCATCCTGACTCG 57.666 45.455 0.00 0.00 0.00 4.18
3975 4457 2.988010 TCAATTCCATCCTGACTCGG 57.012 50.000 0.00 0.00 0.00 4.63
3976 4458 2.466846 TCAATTCCATCCTGACTCGGA 58.533 47.619 0.00 0.00 37.50 4.55
3977 4459 2.837591 TCAATTCCATCCTGACTCGGAA 59.162 45.455 0.00 0.00 41.57 4.30
3978 4460 3.263170 TCAATTCCATCCTGACTCGGAAA 59.737 43.478 0.00 0.00 40.75 3.13
3979 4461 2.762535 TTCCATCCTGACTCGGAAAC 57.237 50.000 0.00 0.00 36.49 2.78
3980 4462 1.938585 TCCATCCTGACTCGGAAACT 58.061 50.000 0.00 0.00 36.49 2.66
3981 4463 2.257207 TCCATCCTGACTCGGAAACTT 58.743 47.619 0.00 0.00 36.49 2.66
3982 4464 2.637872 TCCATCCTGACTCGGAAACTTT 59.362 45.455 0.00 0.00 36.49 2.66
3983 4465 3.072476 TCCATCCTGACTCGGAAACTTTT 59.928 43.478 0.00 0.00 36.49 2.27
3984 4466 4.285003 TCCATCCTGACTCGGAAACTTTTA 59.715 41.667 0.00 0.00 36.49 1.52
3985 4467 4.631813 CCATCCTGACTCGGAAACTTTTAG 59.368 45.833 0.00 0.00 36.49 1.85
3986 4468 5.479306 CATCCTGACTCGGAAACTTTTAGA 58.521 41.667 0.00 0.00 36.49 2.10
3987 4469 5.540400 TCCTGACTCGGAAACTTTTAGAA 57.460 39.130 0.00 0.00 0.00 2.10
3988 4470 5.920903 TCCTGACTCGGAAACTTTTAGAAA 58.079 37.500 0.00 0.00 0.00 2.52
3989 4471 6.531021 TCCTGACTCGGAAACTTTTAGAAAT 58.469 36.000 0.00 0.00 0.00 2.17
3990 4472 6.426937 TCCTGACTCGGAAACTTTTAGAAATG 59.573 38.462 0.00 0.00 0.00 2.32
3991 4473 6.426937 CCTGACTCGGAAACTTTTAGAAATGA 59.573 38.462 0.00 0.00 0.00 2.57
3992 4474 7.119846 CCTGACTCGGAAACTTTTAGAAATGAT 59.880 37.037 0.00 0.00 0.00 2.45
3993 4475 8.029642 TGACTCGGAAACTTTTAGAAATGATC 57.970 34.615 0.00 0.00 0.00 2.92
3994 4476 7.878127 TGACTCGGAAACTTTTAGAAATGATCT 59.122 33.333 0.00 0.00 42.48 2.75
3995 4477 8.622948 ACTCGGAAACTTTTAGAAATGATCTT 57.377 30.769 0.00 0.00 39.71 2.40
3996 4478 9.720769 ACTCGGAAACTTTTAGAAATGATCTTA 57.279 29.630 0.00 0.00 39.71 2.10
4013 4495 9.927081 AATGATCTTATATTATGGGATGGAACC 57.073 33.333 0.00 0.00 0.00 3.62
4014 4496 8.461685 TGATCTTATATTATGGGATGGAACCA 57.538 34.615 0.00 0.00 43.22 3.67
4015 4497 8.899765 TGATCTTATATTATGGGATGGAACCAA 58.100 33.333 0.00 0.00 42.17 3.67
4016 4498 9.753674 GATCTTATATTATGGGATGGAACCAAA 57.246 33.333 0.00 0.00 42.17 3.28
4018 4500 9.586732 TCTTATATTATGGGATGGAACCAAAAG 57.413 33.333 0.00 0.00 42.17 2.27
4019 4501 8.719645 TTATATTATGGGATGGAACCAAAAGG 57.280 34.615 0.00 0.00 42.17 3.11
4020 4502 4.683766 TTATGGGATGGAACCAAAAGGA 57.316 40.909 0.00 0.00 42.17 3.36
4021 4503 2.603075 TGGGATGGAACCAAAAGGAG 57.397 50.000 0.00 0.00 34.44 3.69
4022 4504 1.786441 TGGGATGGAACCAAAAGGAGT 59.214 47.619 0.00 0.00 34.44 3.85
4023 4505 2.990284 TGGGATGGAACCAAAAGGAGTA 59.010 45.455 0.00 0.00 34.44 2.59
4024 4506 3.010138 TGGGATGGAACCAAAAGGAGTAG 59.990 47.826 0.00 0.00 34.44 2.57
4025 4507 3.621558 GGATGGAACCAAAAGGAGTAGG 58.378 50.000 0.00 0.00 0.00 3.18
4026 4508 3.621558 GATGGAACCAAAAGGAGTAGGG 58.378 50.000 0.00 0.00 0.00 3.53
4027 4509 2.708759 TGGAACCAAAAGGAGTAGGGA 58.291 47.619 0.00 0.00 0.00 4.20
4028 4510 3.057586 TGGAACCAAAAGGAGTAGGGAA 58.942 45.455 0.00 0.00 0.00 3.97
4029 4511 3.181437 TGGAACCAAAAGGAGTAGGGAAC 60.181 47.826 0.00 0.00 0.00 3.62
4037 4519 3.437746 GAGTAGGGAACTCGTTGGC 57.562 57.895 0.00 0.00 45.05 4.52
4038 4520 0.458025 GAGTAGGGAACTCGTTGGCG 60.458 60.000 0.00 0.00 45.05 5.69
4039 4521 0.896940 AGTAGGGAACTCGTTGGCGA 60.897 55.000 0.00 0.00 45.79 5.54
4040 4522 0.735287 GTAGGGAACTCGTTGGCGAC 60.735 60.000 0.00 0.00 42.81 5.19
4049 4531 3.810896 GTTGGCGACGGAATGGGC 61.811 66.667 0.00 0.00 0.00 5.36
4050 4532 4.028490 TTGGCGACGGAATGGGCT 62.028 61.111 0.00 0.00 32.23 5.19
4051 4533 3.561120 TTGGCGACGGAATGGGCTT 62.561 57.895 0.00 0.00 32.23 4.35
4052 4534 2.750237 GGCGACGGAATGGGCTTT 60.750 61.111 0.00 0.00 0.00 3.51
4053 4535 1.450669 GGCGACGGAATGGGCTTTA 60.451 57.895 0.00 0.00 0.00 1.85
4054 4536 1.712018 GGCGACGGAATGGGCTTTAC 61.712 60.000 0.00 0.00 0.00 2.01
4055 4537 1.712018 GCGACGGAATGGGCTTTACC 61.712 60.000 0.00 0.00 37.93 2.85
4056 4538 0.107848 CGACGGAATGGGCTTTACCT 60.108 55.000 0.00 0.00 39.10 3.08
4057 4539 1.677820 CGACGGAATGGGCTTTACCTT 60.678 52.381 0.00 0.00 39.10 3.50
4058 4540 2.014857 GACGGAATGGGCTTTACCTTC 58.985 52.381 0.00 0.00 39.10 3.46
4059 4541 1.340697 ACGGAATGGGCTTTACCTTCC 60.341 52.381 0.00 0.00 39.10 3.46
4060 4542 1.776662 GGAATGGGCTTTACCTTCCC 58.223 55.000 0.00 0.00 40.47 3.97
4061 4543 1.288037 GGAATGGGCTTTACCTTCCCT 59.712 52.381 0.00 0.00 40.69 4.20
4062 4544 2.379005 GAATGGGCTTTACCTTCCCTG 58.621 52.381 0.00 0.00 40.69 4.45
4063 4545 0.033109 ATGGGCTTTACCTTCCCTGC 60.033 55.000 0.00 0.00 40.69 4.85
4064 4546 1.140134 TGGGCTTTACCTTCCCTGCT 61.140 55.000 0.00 0.00 40.69 4.24
4065 4547 0.681243 GGGCTTTACCTTCCCTGCTG 60.681 60.000 0.00 0.00 39.10 4.41
4066 4548 1.315981 GGCTTTACCTTCCCTGCTGC 61.316 60.000 0.00 0.00 34.51 5.25
4067 4549 0.322906 GCTTTACCTTCCCTGCTGCT 60.323 55.000 0.00 0.00 0.00 4.24
4068 4550 1.457346 CTTTACCTTCCCTGCTGCTG 58.543 55.000 0.00 0.00 0.00 4.41
4069 4551 0.609131 TTTACCTTCCCTGCTGCTGC 60.609 55.000 8.89 8.89 40.20 5.25
4070 4552 1.492133 TTACCTTCCCTGCTGCTGCT 61.492 55.000 17.00 0.00 40.48 4.24
4071 4553 2.189191 TACCTTCCCTGCTGCTGCTG 62.189 60.000 17.00 15.58 40.48 4.41
4072 4554 3.441290 CTTCCCTGCTGCTGCTGC 61.441 66.667 22.51 22.51 40.48 5.25
4073 4555 3.921936 CTTCCCTGCTGCTGCTGCT 62.922 63.158 27.67 0.00 40.48 4.24
4074 4556 4.717313 TCCCTGCTGCTGCTGCTG 62.717 66.667 27.67 25.97 40.48 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 51 4.886247 TGTTGTCCTAAAACCAAACTCG 57.114 40.909 0.00 0.00 0.00 4.18
62 64 0.538287 GAAGGCAGCCTTGTTGTCCT 60.538 55.000 32.31 4.21 44.82 3.85
68 70 1.719063 TTCCCAGAAGGCAGCCTTGT 61.719 55.000 32.31 25.25 44.82 3.16
83 88 0.250081 GCGAGGAGGACATCATTCCC 60.250 60.000 0.00 0.00 36.12 3.97
89 94 1.478510 TGAAAGAGCGAGGAGGACATC 59.521 52.381 0.00 0.00 0.00 3.06
94 99 2.393271 ACAATGAAAGAGCGAGGAGG 57.607 50.000 0.00 0.00 0.00 4.30
187 192 2.338809 AGAAGGATCCACTGGAACACA 58.661 47.619 15.82 0.00 34.34 3.72
189 194 2.978978 TCAAGAAGGATCCACTGGAACA 59.021 45.455 15.82 0.00 34.34 3.18
198 203 3.876320 GTCAGCTGAATCAAGAAGGATCC 59.124 47.826 20.19 2.48 0.00 3.36
413 795 1.715785 TCCTCATGTATCCATCGGCA 58.284 50.000 0.00 0.00 0.00 5.69
505 887 8.973182 ACATGTCTTTACAAACTTCCCTAAAAA 58.027 29.630 0.00 0.00 39.58 1.94
506 888 8.410141 CACATGTCTTTACAAACTTCCCTAAAA 58.590 33.333 0.00 0.00 39.58 1.52
507 889 7.776030 TCACATGTCTTTACAAACTTCCCTAAA 59.224 33.333 0.00 0.00 39.58 1.85
508 890 7.227910 GTCACATGTCTTTACAAACTTCCCTAA 59.772 37.037 0.00 0.00 39.58 2.69
509 891 6.708949 GTCACATGTCTTTACAAACTTCCCTA 59.291 38.462 0.00 0.00 39.58 3.53
510 892 5.531287 GTCACATGTCTTTACAAACTTCCCT 59.469 40.000 0.00 0.00 39.58 4.20
511 893 5.298276 TGTCACATGTCTTTACAAACTTCCC 59.702 40.000 0.00 0.00 39.58 3.97
512 894 6.371809 TGTCACATGTCTTTACAAACTTCC 57.628 37.500 0.00 0.00 39.58 3.46
513 895 7.587757 GTCATGTCACATGTCTTTACAAACTTC 59.412 37.037 17.51 0.00 39.58 3.01
514 896 7.066887 TGTCATGTCACATGTCTTTACAAACTT 59.933 33.333 17.51 0.00 39.58 2.66
515 897 6.542005 TGTCATGTCACATGTCTTTACAAACT 59.458 34.615 17.51 0.00 39.58 2.66
516 898 6.632834 GTGTCATGTCACATGTCTTTACAAAC 59.367 38.462 17.51 5.68 39.58 2.93
517 899 6.542005 AGTGTCATGTCACATGTCTTTACAAA 59.458 34.615 22.25 0.00 40.37 2.83
518 900 6.054941 AGTGTCATGTCACATGTCTTTACAA 58.945 36.000 22.25 0.00 40.37 2.41
519 901 5.610398 AGTGTCATGTCACATGTCTTTACA 58.390 37.500 22.25 10.98 40.37 2.41
520 902 6.545504 AAGTGTCATGTCACATGTCTTTAC 57.454 37.500 22.25 8.47 40.37 2.01
521 903 8.846943 ATTAAGTGTCATGTCACATGTCTTTA 57.153 30.769 22.25 13.50 40.37 1.85
522 904 7.750229 ATTAAGTGTCATGTCACATGTCTTT 57.250 32.000 22.25 12.40 40.37 2.52
526 908 9.276590 CCATATATTAAGTGTCATGTCACATGT 57.723 33.333 22.25 11.16 40.37 3.21
527 909 9.276590 ACCATATATTAAGTGTCATGTCACATG 57.723 33.333 22.25 11.96 40.37 3.21
528 910 9.494271 GACCATATATTAAGTGTCATGTCACAT 57.506 33.333 22.25 14.48 40.37 3.21
529 911 8.704668 AGACCATATATTAAGTGTCATGTCACA 58.295 33.333 22.25 4.56 40.37 3.58
530 912 9.547753 AAGACCATATATTAAGTGTCATGTCAC 57.452 33.333 14.28 14.28 38.46 3.67
531 913 9.546428 CAAGACCATATATTAAGTGTCATGTCA 57.454 33.333 0.00 0.00 0.00 3.58
532 914 8.993121 CCAAGACCATATATTAAGTGTCATGTC 58.007 37.037 0.00 0.00 0.00 3.06
533 915 7.939039 CCCAAGACCATATATTAAGTGTCATGT 59.061 37.037 0.00 0.00 0.00 3.21
534 916 7.939039 ACCCAAGACCATATATTAAGTGTCATG 59.061 37.037 0.00 0.00 0.00 3.07
535 917 8.045720 ACCCAAGACCATATATTAAGTGTCAT 57.954 34.615 0.00 0.00 0.00 3.06
576 958 4.260620 CCCGGTTCGCTTTATCTACATTTG 60.261 45.833 0.00 0.00 0.00 2.32
605 990 6.995686 TGTTTGCCAAGTTTCTCTCTACATTA 59.004 34.615 0.00 0.00 0.00 1.90
826 1228 2.181521 GCGAACGTGGGGTTGTTCA 61.182 57.895 6.00 0.00 43.59 3.18
875 1277 2.687297 AGGCTCTAGATCATTGGCTGA 58.313 47.619 4.45 0.00 38.53 4.26
998 1401 1.360551 CAGACGAGCGTCCCCATAG 59.639 63.158 18.28 0.24 45.59 2.23
1112 1543 2.894565 GATCAGCAGCAGCATCGCC 61.895 63.158 3.17 0.00 45.49 5.54
1187 1618 3.167414 AGGCCGGCCTTTTACACT 58.833 55.556 42.84 19.01 45.70 3.55
1372 1803 4.617223 GGCTTAAGAAGTTCAACGCATTTC 59.383 41.667 6.67 0.00 0.00 2.17
1379 1810 3.890128 GCACTGGCTTAAGAAGTTCAAC 58.110 45.455 6.67 0.00 36.96 3.18
1401 1832 2.179267 CACAGCTCAGCTACGCGA 59.821 61.111 15.93 0.00 36.40 5.87
1452 1883 5.680619 ACGCTCCATAACTTCCATATTTCA 58.319 37.500 0.00 0.00 0.00 2.69
1672 2106 7.440523 AAACTCTAATGACACCTTTCACATC 57.559 36.000 0.00 0.00 0.00 3.06
1708 2146 2.158755 ACAACTGTTGTTCTCCCTCTGG 60.159 50.000 19.85 0.00 42.22 3.86
1985 2427 2.967076 CGCAACAGCAGTCACCGT 60.967 61.111 0.00 0.00 0.00 4.83
2062 2504 1.316706 GCTGAGCTCTCCTACGGTGT 61.317 60.000 16.19 0.00 0.00 4.16
2108 2550 7.217200 AGCTTGTAGAACATAGAAACTGTCAA 58.783 34.615 0.00 0.00 0.00 3.18
2119 2561 6.020971 TCGACTTCAAGCTTGTAGAACATA 57.979 37.500 32.17 16.33 31.10 2.29
2174 2616 2.352960 GGTTAGCAACATAGACAGCAGC 59.647 50.000 0.00 0.00 0.00 5.25
2290 2732 2.301346 CCCAAGAGATACATTGCCCAC 58.699 52.381 0.00 0.00 0.00 4.61
2326 2768 1.517832 GCTCCTGCTGTCCATACGT 59.482 57.895 0.00 0.00 36.03 3.57
2380 2822 2.337583 TCGAAATTTCTGAGCCGACTG 58.662 47.619 15.92 0.00 0.00 3.51
2381 2823 2.743636 TCGAAATTTCTGAGCCGACT 57.256 45.000 15.92 0.00 0.00 4.18
2382 2824 5.463724 AGATTATCGAAATTTCTGAGCCGAC 59.536 40.000 15.92 7.40 0.00 4.79
2383 2825 5.601662 AGATTATCGAAATTTCTGAGCCGA 58.398 37.500 15.92 8.09 0.00 5.54
2384 2826 5.914085 AGATTATCGAAATTTCTGAGCCG 57.086 39.130 15.92 2.69 0.00 5.52
2385 2827 6.909357 CACAAGATTATCGAAATTTCTGAGCC 59.091 38.462 15.92 1.81 0.00 4.70
2388 2830 9.992910 CAATCACAAGATTATCGAAATTTCTGA 57.007 29.630 15.92 14.14 42.46 3.27
2389 2831 9.992910 TCAATCACAAGATTATCGAAATTTCTG 57.007 29.630 15.92 9.61 42.46 3.02
2450 2893 7.384932 AGGAATTGCCAAATAAAAACTTCTTCG 59.615 33.333 0.00 0.00 40.02 3.79
2469 2912 7.910441 ACAAAAAGGATATGCAAAGGAATTG 57.090 32.000 0.00 0.00 42.21 2.32
2653 3101 7.595819 AGACAGTCCTGAATTTAGAGGATAG 57.404 40.000 0.40 1.74 40.55 2.08
2735 3183 5.172205 AGCTTTCCATCTTTACTTCGAGTC 58.828 41.667 0.00 0.00 0.00 3.36
2813 3261 6.584185 TGTCAGTACTGAACACTAATAGCA 57.416 37.500 26.74 13.37 41.85 3.49
2875 3343 0.249868 CAGGAACGCCAGTCTTCACA 60.250 55.000 0.00 0.00 36.29 3.58
2877 3345 0.033504 GACAGGAACGCCAGTCTTCA 59.966 55.000 0.00 0.00 44.71 3.02
2966 3434 6.178239 ACGGTGAATAATGACTTTTACTGC 57.822 37.500 0.00 0.00 0.00 4.40
3023 3491 0.249120 ATCACATTCCTTGCGTCGGA 59.751 50.000 0.00 0.00 0.00 4.55
3111 3579 3.682718 CGGCAAACTAGGTTCCATGATCT 60.683 47.826 0.00 0.00 0.00 2.75
3173 3641 9.569167 CTCAAAATATCGAACTAGTCAGTAACA 57.431 33.333 0.00 0.00 33.48 2.41
3279 3748 8.081633 TGCTACATGAACCTTATTTGAACAAAG 58.918 33.333 0.00 0.00 33.32 2.77
3320 3797 6.201425 AGTTTAAACTGAAGATACGTTTCGCA 59.799 34.615 19.94 0.00 37.98 5.10
3422 3899 1.081376 GGACACTCGTCTCACACCG 60.081 63.158 0.00 0.00 42.21 4.94
3566 4045 1.965643 TGCAGCAAAAAGAATGCCTCT 59.034 42.857 0.00 0.00 44.91 3.69
3567 4046 2.029649 TCTGCAGCAAAAAGAATGCCTC 60.030 45.455 9.47 0.00 44.91 4.70
3644 4123 2.878406 GAGCCTACTTTGCAAGTCACAA 59.122 45.455 0.00 0.00 41.77 3.33
3658 4137 8.198109 TGAAAGATAAACTACATCAGAGCCTAC 58.802 37.037 0.00 0.00 0.00 3.18
3755 4235 5.466058 GCAAGATCATCTAAGTCCACATGAG 59.534 44.000 0.00 0.00 0.00 2.90
3760 4240 4.142609 TGGCAAGATCATCTAAGTCCAC 57.857 45.455 0.00 0.00 0.00 4.02
3894 4376 5.745312 ACATTCGATTGCCTCCTGATATA 57.255 39.130 7.21 0.00 0.00 0.86
3895 4377 4.630644 ACATTCGATTGCCTCCTGATAT 57.369 40.909 7.21 0.00 0.00 1.63
3896 4378 5.297547 GTTACATTCGATTGCCTCCTGATA 58.702 41.667 7.21 0.00 0.00 2.15
3897 4379 4.130118 GTTACATTCGATTGCCTCCTGAT 58.870 43.478 7.21 0.00 0.00 2.90
3899 4381 2.614057 GGTTACATTCGATTGCCTCCTG 59.386 50.000 7.21 0.00 0.00 3.86
3900 4382 2.741878 CGGTTACATTCGATTGCCTCCT 60.742 50.000 7.21 0.00 0.00 3.69
3901 4383 1.597663 CGGTTACATTCGATTGCCTCC 59.402 52.381 7.21 6.28 0.00 4.30
3902 4384 2.540101 CTCGGTTACATTCGATTGCCTC 59.460 50.000 7.21 0.00 34.77 4.70
3905 4387 3.369756 TGAACTCGGTTACATTCGATTGC 59.630 43.478 7.21 0.00 34.77 3.56
3906 4388 4.492570 GCTGAACTCGGTTACATTCGATTG 60.493 45.833 5.78 5.78 34.77 2.67
3907 4389 3.617263 GCTGAACTCGGTTACATTCGATT 59.383 43.478 0.00 0.00 34.77 3.34
3910 4392 2.607187 AGCTGAACTCGGTTACATTCG 58.393 47.619 0.00 0.00 0.00 3.34
3911 4393 3.994392 TGAAGCTGAACTCGGTTACATTC 59.006 43.478 0.00 0.00 0.00 2.67
3912 4394 3.746492 GTGAAGCTGAACTCGGTTACATT 59.254 43.478 0.00 0.00 0.00 2.71
3914 4396 2.750948 GTGAAGCTGAACTCGGTTACA 58.249 47.619 0.00 0.00 0.00 2.41
3927 4409 6.366817 ACAAGAATGTCTAGGCGTGAAGCT 62.367 45.833 0.00 0.00 40.11 3.74
3943 4425 7.937942 CAGGATGGAATTGATCTAGACAAGAAT 59.062 37.037 0.00 0.00 37.89 2.40
3952 4434 4.281941 CCGAGTCAGGATGGAATTGATCTA 59.718 45.833 0.00 0.00 36.16 1.98
3953 4435 3.070734 CCGAGTCAGGATGGAATTGATCT 59.929 47.826 0.00 0.00 36.16 2.75
3954 4436 3.070159 TCCGAGTCAGGATGGAATTGATC 59.930 47.826 0.31 0.00 34.92 2.92
3955 4437 3.041211 TCCGAGTCAGGATGGAATTGAT 58.959 45.455 0.31 0.00 34.92 2.57
3956 4438 2.466846 TCCGAGTCAGGATGGAATTGA 58.533 47.619 0.31 0.00 34.92 2.57
3957 4439 2.988010 TCCGAGTCAGGATGGAATTG 57.012 50.000 0.31 0.00 34.92 2.32
3958 4440 3.264450 AGTTTCCGAGTCAGGATGGAATT 59.736 43.478 4.84 0.00 40.02 2.17
3959 4441 2.840651 AGTTTCCGAGTCAGGATGGAAT 59.159 45.455 4.84 0.00 40.02 3.01
3960 4442 2.257207 AGTTTCCGAGTCAGGATGGAA 58.743 47.619 4.84 0.00 40.48 3.53
3961 4443 1.938585 AGTTTCCGAGTCAGGATGGA 58.061 50.000 4.84 0.00 40.48 3.41
3962 4444 2.770164 AAGTTTCCGAGTCAGGATGG 57.230 50.000 4.84 0.00 40.48 3.51
3963 4445 5.479306 TCTAAAAGTTTCCGAGTCAGGATG 58.521 41.667 4.84 0.00 40.48 3.51
3964 4446 5.740290 TCTAAAAGTTTCCGAGTCAGGAT 57.260 39.130 4.84 0.00 40.48 3.24
3965 4447 5.540400 TTCTAAAAGTTTCCGAGTCAGGA 57.460 39.130 0.31 0.31 38.79 3.86
3966 4448 6.426937 TCATTTCTAAAAGTTTCCGAGTCAGG 59.573 38.462 0.00 0.00 0.00 3.86
3967 4449 7.421530 TCATTTCTAAAAGTTTCCGAGTCAG 57.578 36.000 0.00 0.00 0.00 3.51
3968 4450 7.878127 AGATCATTTCTAAAAGTTTCCGAGTCA 59.122 33.333 0.00 0.00 30.96 3.41
3969 4451 8.257830 AGATCATTTCTAAAAGTTTCCGAGTC 57.742 34.615 0.00 0.00 30.96 3.36
3970 4452 8.622948 AAGATCATTTCTAAAAGTTTCCGAGT 57.377 30.769 0.00 0.00 33.05 4.18
3987 4469 9.927081 GGTTCCATCCCATAATATAAGATCATT 57.073 33.333 0.00 0.00 0.00 2.57
3988 4470 9.072460 TGGTTCCATCCCATAATATAAGATCAT 57.928 33.333 0.00 0.00 0.00 2.45
3989 4471 8.461685 TGGTTCCATCCCATAATATAAGATCA 57.538 34.615 0.00 0.00 0.00 2.92
3990 4472 9.753674 TTTGGTTCCATCCCATAATATAAGATC 57.246 33.333 0.00 0.00 0.00 2.75
3992 4474 9.586732 CTTTTGGTTCCATCCCATAATATAAGA 57.413 33.333 0.00 0.00 0.00 2.10
3993 4475 8.806146 CCTTTTGGTTCCATCCCATAATATAAG 58.194 37.037 0.00 0.00 34.07 1.73
3994 4476 8.515351 TCCTTTTGGTTCCATCCCATAATATAA 58.485 33.333 0.00 0.00 41.38 0.98
3995 4477 8.063053 TCCTTTTGGTTCCATCCCATAATATA 57.937 34.615 0.00 0.00 41.38 0.86
3996 4478 6.932753 TCCTTTTGGTTCCATCCCATAATAT 58.067 36.000 0.00 0.00 41.38 1.28
3997 4479 6.068498 ACTCCTTTTGGTTCCATCCCATAATA 60.068 38.462 0.00 0.00 41.38 0.98
3998 4480 5.211201 CTCCTTTTGGTTCCATCCCATAAT 58.789 41.667 0.00 0.00 41.38 1.28
3999 4481 4.045334 ACTCCTTTTGGTTCCATCCCATAA 59.955 41.667 0.00 0.00 41.38 1.90
4000 4482 3.596046 ACTCCTTTTGGTTCCATCCCATA 59.404 43.478 0.00 0.00 41.38 2.74
4001 4483 2.383338 ACTCCTTTTGGTTCCATCCCAT 59.617 45.455 0.00 0.00 41.38 4.00
4002 4484 1.786441 ACTCCTTTTGGTTCCATCCCA 59.214 47.619 0.00 0.00 41.38 4.37
4003 4485 2.604912 ACTCCTTTTGGTTCCATCCC 57.395 50.000 0.00 0.00 41.38 3.85
4004 4486 3.621558 CCTACTCCTTTTGGTTCCATCC 58.378 50.000 0.00 0.00 41.38 3.51
4005 4487 3.265995 TCCCTACTCCTTTTGGTTCCATC 59.734 47.826 0.00 0.00 41.38 3.51
4006 4488 3.265489 TCCCTACTCCTTTTGGTTCCAT 58.735 45.455 0.00 0.00 41.38 3.41
4007 4489 2.708759 TCCCTACTCCTTTTGGTTCCA 58.291 47.619 0.00 0.00 41.38 3.53
4008 4490 3.074094 AGTTCCCTACTCCTTTTGGTTCC 59.926 47.826 0.00 0.00 41.38 3.62
4009 4491 4.325119 GAGTTCCCTACTCCTTTTGGTTC 58.675 47.826 0.00 0.00 46.30 3.62
4010 4492 4.368565 GAGTTCCCTACTCCTTTTGGTT 57.631 45.455 0.00 0.00 46.30 3.67
4020 4502 0.896940 TCGCCAACGAGTTCCCTACT 60.897 55.000 0.00 0.00 45.12 2.57
4021 4503 1.588082 TCGCCAACGAGTTCCCTAC 59.412 57.895 0.00 0.00 45.12 3.18
4022 4504 4.100479 TCGCCAACGAGTTCCCTA 57.900 55.556 0.00 0.00 45.12 3.53
4032 4514 3.810896 GCCCATTCCGTCGCCAAC 61.811 66.667 0.00 0.00 0.00 3.77
4033 4515 3.561120 AAGCCCATTCCGTCGCCAA 62.561 57.895 0.00 0.00 0.00 4.52
4034 4516 2.186602 TAAAGCCCATTCCGTCGCCA 62.187 55.000 0.00 0.00 0.00 5.69
4035 4517 1.450669 TAAAGCCCATTCCGTCGCC 60.451 57.895 0.00 0.00 0.00 5.54
4036 4518 1.712018 GGTAAAGCCCATTCCGTCGC 61.712 60.000 0.00 0.00 0.00 5.19
4037 4519 0.107848 AGGTAAAGCCCATTCCGTCG 60.108 55.000 0.00 0.00 38.26 5.12
4038 4520 2.014857 GAAGGTAAAGCCCATTCCGTC 58.985 52.381 0.00 0.00 38.26 4.79
4039 4521 1.340697 GGAAGGTAAAGCCCATTCCGT 60.341 52.381 0.00 0.00 38.26 4.69
4040 4522 1.389555 GGAAGGTAAAGCCCATTCCG 58.610 55.000 0.00 0.00 38.26 4.30
4041 4523 1.288037 AGGGAAGGTAAAGCCCATTCC 59.712 52.381 0.00 0.00 44.55 3.01
4042 4524 2.379005 CAGGGAAGGTAAAGCCCATTC 58.621 52.381 0.00 0.00 44.55 2.67
4043 4525 1.619704 GCAGGGAAGGTAAAGCCCATT 60.620 52.381 0.00 0.00 44.55 3.16
4044 4526 0.033109 GCAGGGAAGGTAAAGCCCAT 60.033 55.000 0.00 0.00 44.55 4.00
4045 4527 1.140134 AGCAGGGAAGGTAAAGCCCA 61.140 55.000 0.00 0.00 44.55 5.36
4046 4528 0.681243 CAGCAGGGAAGGTAAAGCCC 60.681 60.000 0.00 0.00 42.37 5.19
4047 4529 1.315981 GCAGCAGGGAAGGTAAAGCC 61.316 60.000 0.00 0.00 37.58 4.35
4048 4530 0.322906 AGCAGCAGGGAAGGTAAAGC 60.323 55.000 0.00 0.00 0.00 3.51
4049 4531 1.457346 CAGCAGCAGGGAAGGTAAAG 58.543 55.000 0.00 0.00 0.00 1.85
4050 4532 0.609131 GCAGCAGCAGGGAAGGTAAA 60.609 55.000 0.00 0.00 41.58 2.01
4051 4533 1.002134 GCAGCAGCAGGGAAGGTAA 60.002 57.895 0.00 0.00 41.58 2.85
4052 4534 1.920325 AGCAGCAGCAGGGAAGGTA 60.920 57.895 3.17 0.00 45.49 3.08
4053 4535 3.255397 AGCAGCAGCAGGGAAGGT 61.255 61.111 3.17 0.00 45.49 3.50
4054 4536 2.750637 CAGCAGCAGCAGGGAAGG 60.751 66.667 3.17 0.00 45.49 3.46
4055 4537 3.441290 GCAGCAGCAGCAGGGAAG 61.441 66.667 4.63 0.00 45.49 3.46
4056 4538 3.962694 AGCAGCAGCAGCAGGGAA 61.963 61.111 12.92 0.00 45.49 3.97
4057 4539 4.717313 CAGCAGCAGCAGCAGGGA 62.717 66.667 12.92 0.00 45.49 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.