Multiple sequence alignment - TraesCS1B01G185000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G185000 chr1B 100.000 8574 0 0 1 8574 332088937 332080364 0.000000e+00 15834.0
1 TraesCS1B01G185000 chr1B 74.595 185 39 8 6792 6971 633055391 633055210 3.320000e-09 75.0
2 TraesCS1B01G185000 chr1A 96.072 2546 73 13 3409 5945 307036029 307038556 0.000000e+00 4122.0
3 TraesCS1B01G185000 chr1A 95.034 1450 38 14 996 2421 307033755 307035194 0.000000e+00 2248.0
4 TraesCS1B01G185000 chr1A 95.272 973 45 1 6757 7729 307039810 307040781 0.000000e+00 1541.0
5 TraesCS1B01G185000 chr1A 92.689 807 31 15 2607 3411 307035216 307035996 0.000000e+00 1138.0
6 TraesCS1B01G185000 chr1A 89.180 610 36 8 7725 8334 307041003 307041582 0.000000e+00 734.0
7 TraesCS1B01G185000 chr1A 89.981 519 38 4 6243 6761 307039107 307039611 0.000000e+00 658.0
8 TraesCS1B01G185000 chr1A 86.444 568 49 9 1 544 307032074 307032637 1.590000e-166 597.0
9 TraesCS1B01G185000 chr1A 88.571 210 14 1 5941 6140 307038895 307039104 6.650000e-61 246.0
10 TraesCS1B01G185000 chr1A 96.454 141 3 2 2473 2612 486045767 486045906 1.860000e-56 231.0
11 TraesCS1B01G185000 chr1A 89.305 187 5 8 781 964 307033580 307033754 4.030000e-53 220.0
12 TraesCS1B01G185000 chr1A 88.961 154 16 1 8418 8571 307041774 307041926 1.140000e-43 189.0
13 TraesCS1B01G185000 chr1A 95.181 83 3 1 8339 8421 307041652 307041733 6.980000e-26 130.0
14 TraesCS1B01G185000 chr1D 93.876 1731 60 17 784 2481 246066767 246068484 0.000000e+00 2567.0
15 TraesCS1B01G185000 chr1D 96.107 976 34 2 6757 7729 246075308 246076282 0.000000e+00 1589.0
16 TraesCS1B01G185000 chr1D 95.628 915 35 3 5033 5945 246070804 246071715 0.000000e+00 1463.0
17 TraesCS1B01G185000 chr1D 95.466 816 26 6 4170 4982 246070002 246070809 0.000000e+00 1291.0
18 TraesCS1B01G185000 chr1D 92.840 810 41 9 2605 3411 246068483 246069278 0.000000e+00 1158.0
19 TraesCS1B01G185000 chr1D 95.035 705 25 2 3409 4113 246069311 246070005 0.000000e+00 1099.0
20 TraesCS1B01G185000 chr1D 88.443 848 69 8 5941 6761 246071806 246072651 0.000000e+00 996.0
21 TraesCS1B01G185000 chr1D 88.665 547 54 6 1 544 246059901 246060442 0.000000e+00 660.0
22 TraesCS1B01G185000 chr1D 87.467 383 23 11 7725 8101 246076506 246076869 1.330000e-112 418.0
23 TraesCS1B01G185000 chr1D 93.991 233 8 2 8106 8338 246077429 246077655 1.770000e-91 348.0
24 TraesCS1B01G185000 chr1D 98.246 57 1 0 8365 8421 246079262 246079318 5.480000e-17 100.0
25 TraesCS1B01G185000 chr2D 96.503 143 5 0 2480 2622 128458603 128458745 4.000000e-58 237.0
26 TraesCS1B01G185000 chr2D 90.588 85 8 0 5067 5151 548076793 548076877 7.030000e-21 113.0
27 TraesCS1B01G185000 chr2D 86.047 86 12 0 4025 4110 633198345 633198430 9.160000e-15 93.5
28 TraesCS1B01G185000 chr4B 95.890 146 3 2 2479 2624 63765823 63765681 5.180000e-57 233.0
29 TraesCS1B01G185000 chr4B 91.011 89 7 1 4129 4217 61303665 61303578 1.510000e-22 119.0
30 TraesCS1B01G185000 chr4B 87.778 90 11 0 4129 4218 492223542 492223453 1.180000e-18 106.0
31 TraesCS1B01G185000 chr6A 97.080 137 4 0 2471 2607 595074367 595074231 1.860000e-56 231.0
32 TraesCS1B01G185000 chr6A 88.235 85 10 0 5065 5149 88080388 88080304 1.520000e-17 102.0
33 TraesCS1B01G185000 chr6A 88.235 85 6 3 5065 5149 409430728 409430648 1.970000e-16 99.0
34 TraesCS1B01G185000 chr2B 96.403 139 4 1 2473 2610 173442716 173442854 2.410000e-55 228.0
35 TraesCS1B01G185000 chr2B 86.047 86 12 0 4025 4110 776398956 776399041 9.160000e-15 93.5
36 TraesCS1B01G185000 chr2A 95.775 142 4 2 2467 2607 638330126 638330266 2.410000e-55 228.0
37 TraesCS1B01G185000 chr2A 86.047 86 12 0 4025 4110 759306900 759306815 9.160000e-15 93.5
38 TraesCS1B01G185000 chr7A 94.558 147 7 1 2477 2623 31552606 31552461 8.660000e-55 226.0
39 TraesCS1B01G185000 chr7A 96.000 75 3 0 4404 4478 716394632 716394706 1.170000e-23 122.0
40 TraesCS1B01G185000 chr7A 81.522 92 14 3 6785 6874 285432105 285432015 1.190000e-08 73.1
41 TraesCS1B01G185000 chr7A 100.000 28 0 0 4129 4156 517579032 517579059 1.600000e-02 52.8
42 TraesCS1B01G185000 chr4A 94.558 147 6 2 2478 2622 692357971 692357825 8.660000e-55 226.0
43 TraesCS1B01G185000 chr3A 94.558 147 7 1 2477 2623 481867661 481867516 8.660000e-55 226.0
44 TraesCS1B01G185000 chr3A 94.872 78 4 0 4397 4474 40352503 40352426 1.170000e-23 122.0
45 TraesCS1B01G185000 chr7D 94.253 87 3 2 4398 4482 184573437 184573351 1.940000e-26 132.0
46 TraesCS1B01G185000 chr7D 97.333 75 1 1 4401 4474 5307739 5307665 9.040000e-25 126.0
47 TraesCS1B01G185000 chr7D 93.976 83 3 2 4399 4479 184573353 184573435 3.250000e-24 124.0
48 TraesCS1B01G185000 chr7D 88.000 100 6 2 4390 4483 627316412 627316511 7.030000e-21 113.0
49 TraesCS1B01G185000 chr4D 94.048 84 2 3 4394 4475 15786188 15786270 3.250000e-24 124.0
50 TraesCS1B01G185000 chr5D 91.765 85 6 1 4398 4482 63616065 63615982 5.440000e-22 117.0
51 TraesCS1B01G185000 chr5D 94.203 69 4 0 5065 5133 256458043 256458111 1.180000e-18 106.0
52 TraesCS1B01G185000 chr3D 77.143 210 40 7 6766 6972 39369598 39369394 1.960000e-21 115.0
53 TraesCS1B01G185000 chr3D 73.596 178 36 11 6802 6973 362044131 362044303 3.340000e-04 58.4
54 TraesCS1B01G185000 chr6D 84.000 125 9 6 4129 4244 263940893 263941015 9.100000e-20 110.0
55 TraesCS1B01G185000 chr6D 88.235 85 10 0 5065 5149 71537508 71537424 1.520000e-17 102.0
56 TraesCS1B01G185000 chr6D 92.647 68 5 0 4150 4217 319255328 319255395 1.970000e-16 99.0
57 TraesCS1B01G185000 chr6D 85.714 56 7 1 6790 6844 338893335 338893280 3.340000e-04 58.4
58 TraesCS1B01G185000 chr6B 90.588 85 4 1 5065 5149 471675228 471675148 9.100000e-20 110.0
59 TraesCS1B01G185000 chr6B 83.871 124 9 6 4130 4244 404990391 404990512 3.270000e-19 108.0
60 TraesCS1B01G185000 chr6B 88.235 85 10 0 5065 5149 146149432 146149348 1.520000e-17 102.0
61 TraesCS1B01G185000 chr7B 87.755 98 4 6 4125 4215 286834644 286834740 3.270000e-19 108.0
62 TraesCS1B01G185000 chr3B 78.453 181 26 9 6789 6969 73696255 73696088 1.180000e-18 106.0
63 TraesCS1B01G185000 chr5B 88.312 77 6 3 5992 6065 531785342 531785266 1.190000e-13 89.8
64 TraesCS1B01G185000 chr5B 96.078 51 2 0 5992 6042 531772020 531771970 5.520000e-12 84.2
65 TraesCS1B01G185000 chrUn 83.721 86 14 0 4129 4214 300898718 300898633 1.980000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G185000 chr1B 332080364 332088937 8573 True 15834.000000 15834 100.000000 1 8574 1 chr1B.!!$R1 8573
1 TraesCS1B01G185000 chr1A 307032074 307041926 9852 False 1074.818182 4122 91.517273 1 8571 11 chr1A.!!$F2 8570
2 TraesCS1B01G185000 chr1D 246066767 246079318 12551 False 1102.900000 2567 93.709900 784 8421 10 chr1D.!!$F2 7637
3 TraesCS1B01G185000 chr1D 246059901 246060442 541 False 660.000000 660 88.665000 1 544 1 chr1D.!!$F1 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 1530 0.892063 TGCGTACATGGAGCACTGTA 59.108 50.000 7.72 0.00 35.81 2.74 F
1596 2382 0.465705 ACTATCATGCTCCGTGTGGG 59.534 55.000 0.00 0.00 35.24 4.61 F
1607 2393 1.202604 TCCGTGTGGGTCTGAAGTTTC 60.203 52.381 0.00 0.00 37.00 2.78 F
2497 3291 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13 F
2501 3295 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
2502 3296 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24 F
4120 4959 0.940991 GCGTCGGTAAGTGTTTCCGT 60.941 55.000 4.88 0.00 43.94 4.69 F
4786 5625 1.271856 TATCACCCTCGGACTTTGCA 58.728 50.000 0.00 0.00 0.00 4.08 F
6530 7750 0.234365 GTATCCTCGTACGCGGACTC 59.766 60.000 27.95 19.13 38.89 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2479 3273 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
2482 3276 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
2590 3384 0.179026 CATCTACTCCCTCCGTCCGA 60.179 60.000 0.00 0.00 0.00 4.55 R
4455 5294 1.787676 ACTACTCCCTCCGTCCCATAT 59.212 52.381 0.00 0.00 0.00 1.78 R
4546 5385 8.461222 TGAGAAACAATAATTAGCTTCCATGTG 58.539 33.333 0.00 0.00 0.00 3.21 R
4739 5578 3.119919 GCAAAGAAGATGTCAAGCAGAGG 60.120 47.826 0.00 0.00 0.00 3.69 R
5971 7164 1.137479 TGACCCGTTTATCCACGATCC 59.863 52.381 0.00 0.00 43.15 3.36 R
6547 7778 0.039180 TCCTCCTAGCTGACGTTGGA 59.961 55.000 0.00 0.00 0.00 3.53 R
8327 13015 0.106708 TTCTCAGCTCACCACCACAC 59.893 55.000 0.00 0.00 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.165270 CCTCGGGTCAAATCACAACC 58.835 55.000 0.00 0.00 0.00 3.77
58 59 4.634883 GGCCTAGTAGTTAGTTTCCTTTGC 59.365 45.833 0.00 0.00 0.00 3.68
491 518 7.500807 AAGAATGTTCAAACGTGTGTTTAAC 57.499 32.000 5.45 3.79 46.33 2.01
528 555 5.904941 AGTCAGAAAATGTTCAATGTGCAA 58.095 33.333 0.00 0.00 36.09 4.08
766 1344 8.738199 TTTTGAGAGAGTACGTAATGTAACTG 57.262 34.615 0.00 0.00 34.07 3.16
769 1347 7.303261 TGAGAGAGTACGTAATGTAACTGTTG 58.697 38.462 0.00 0.00 34.07 3.33
770 1348 7.173735 TGAGAGAGTACGTAATGTAACTGTTGA 59.826 37.037 0.00 0.00 34.07 3.18
771 1349 7.303998 AGAGAGTACGTAATGTAACTGTTGAC 58.696 38.462 0.00 0.00 34.07 3.18
772 1350 6.082338 AGAGTACGTAATGTAACTGTTGACG 58.918 40.000 0.00 7.56 34.07 4.35
775 1353 3.182972 ACGTAATGTAACTGTTGACGTGC 59.817 43.478 2.69 0.00 40.24 5.34
777 1355 1.860676 ATGTAACTGTTGACGTGCGT 58.139 45.000 2.69 0.00 0.00 5.24
778 1356 2.488639 TGTAACTGTTGACGTGCGTA 57.511 45.000 2.69 0.00 0.00 4.42
779 1357 2.118683 TGTAACTGTTGACGTGCGTAC 58.881 47.619 2.69 0.00 0.00 3.67
792 1530 0.892063 TGCGTACATGGAGCACTGTA 59.108 50.000 7.72 0.00 35.81 2.74
793 1531 1.135112 TGCGTACATGGAGCACTGTAG 60.135 52.381 7.72 0.00 35.81 2.74
794 1532 1.560923 CGTACATGGAGCACTGTAGC 58.439 55.000 0.00 0.00 0.00 3.58
842 1580 3.963428 AGTTTCTGTCTCGCAATAGGT 57.037 42.857 0.00 0.00 0.00 3.08
858 1596 2.903404 GGTGGGACCTCCTAGACAG 58.097 63.158 2.25 0.00 34.73 3.51
936 1701 3.274288 GAATCTGAATTCCGGAGCAGTT 58.726 45.455 22.45 17.54 36.12 3.16
937 1702 2.386661 TCTGAATTCCGGAGCAGTTC 57.613 50.000 22.45 17.20 0.00 3.01
938 1703 1.002366 CTGAATTCCGGAGCAGTTCG 58.998 55.000 17.88 9.19 0.00 3.95
939 1704 1.019278 TGAATTCCGGAGCAGTTCGC 61.019 55.000 3.34 0.00 42.91 4.70
941 1706 3.682292 ATTCCGGAGCAGTTCGCCC 62.682 63.158 3.34 0.00 44.04 6.13
944 1709 3.764466 CGGAGCAGTTCGCCCTCT 61.764 66.667 0.00 0.00 44.04 3.69
945 1710 2.185608 GGAGCAGTTCGCCCTCTC 59.814 66.667 0.00 0.00 44.04 3.20
964 1732 2.282251 ACTCCCACTCGCGACAGA 60.282 61.111 3.71 0.00 0.00 3.41
1208 1976 0.944311 CTCAAGGTAACGCGTGCACT 60.944 55.000 14.98 8.43 46.39 4.40
1355 2123 2.579878 GACCGAGTCCATCTGTCCA 58.420 57.895 0.00 0.00 36.46 4.02
1356 2124 1.115467 GACCGAGTCCATCTGTCCAT 58.885 55.000 0.00 0.00 36.46 3.41
1420 2188 1.837051 AGTTCCACCACCTGCGAGA 60.837 57.895 0.00 0.00 0.00 4.04
1435 2203 2.094700 TGCGAGAATGTGACCTAGTGTC 60.095 50.000 4.84 4.84 44.72 3.67
1579 2365 8.329502 AGAAGATGGGTAGCTTAAATGTTTACT 58.670 33.333 0.00 0.00 31.57 2.24
1596 2382 0.465705 ACTATCATGCTCCGTGTGGG 59.534 55.000 0.00 0.00 35.24 4.61
1607 2393 1.202604 TCCGTGTGGGTCTGAAGTTTC 60.203 52.381 0.00 0.00 37.00 2.78
1629 2415 2.869801 GTTTGGCTTTGGCAGGTAAAAC 59.130 45.455 0.00 0.00 39.75 2.43
1742 2534 9.528018 TGTCAGGAAATTAACAAGAAAAATGAC 57.472 29.630 0.00 0.00 33.28 3.06
1774 2566 2.632028 TCTGAATGGAGGAGCTAGCATC 59.368 50.000 18.83 11.52 0.00 3.91
2009 2801 8.038944 TCAGAATACACTAATTACACCAGGTTC 58.961 37.037 0.00 0.00 0.00 3.62
2261 3055 6.235231 TCTTGGATAGATACCAAACAGGAC 57.765 41.667 0.00 0.00 45.05 3.85
2266 3060 5.104900 GGATAGATACCAAACAGGACACAGT 60.105 44.000 0.00 0.00 41.22 3.55
2321 3115 6.202516 TGAAGTTTCAATTTTCAGGTCGTT 57.797 33.333 0.00 0.00 33.55 3.85
2336 3130 1.336755 GTCGTTTTGGATGTTGGCTGT 59.663 47.619 0.00 0.00 0.00 4.40
2399 3193 4.807834 GCCACTCGGGTAACTTAAGTAATC 59.192 45.833 8.92 2.57 39.65 1.75
2440 3234 9.401873 CACTTATGTGTTGCCAATGATATTATG 57.598 33.333 0.62 0.00 39.24 1.90
2451 3245 9.247126 TGCCAATGATATTATGAAATTTGAACG 57.753 29.630 0.00 0.00 0.00 3.95
2479 3273 8.090788 TGCTTTCTAAGTGTCCCTTTCTATAT 57.909 34.615 0.00 0.00 34.46 0.86
2480 3274 9.209048 TGCTTTCTAAGTGTCCCTTTCTATATA 57.791 33.333 0.00 0.00 34.46 0.86
2481 3275 9.478768 GCTTTCTAAGTGTCCCTTTCTATATAC 57.521 37.037 0.00 0.00 34.46 1.47
2484 3278 8.937207 TCTAAGTGTCCCTTTCTATATACTCC 57.063 38.462 0.00 0.00 34.46 3.85
2485 3279 6.997942 AAGTGTCCCTTTCTATATACTCCC 57.002 41.667 0.00 0.00 0.00 4.30
2486 3280 6.296435 AGTGTCCCTTTCTATATACTCCCT 57.704 41.667 0.00 0.00 0.00 4.20
2487 3281 6.316513 AGTGTCCCTTTCTATATACTCCCTC 58.683 44.000 0.00 0.00 0.00 4.30
2488 3282 5.481122 GTGTCCCTTTCTATATACTCCCTCC 59.519 48.000 0.00 0.00 0.00 4.30
2489 3283 4.705991 GTCCCTTTCTATATACTCCCTCCG 59.294 50.000 0.00 0.00 0.00 4.63
2490 3284 4.356190 TCCCTTTCTATATACTCCCTCCGT 59.644 45.833 0.00 0.00 0.00 4.69
2491 3285 4.705991 CCCTTTCTATATACTCCCTCCGTC 59.294 50.000 0.00 0.00 0.00 4.79
2492 3286 4.705991 CCTTTCTATATACTCCCTCCGTCC 59.294 50.000 0.00 0.00 0.00 4.79
2493 3287 3.623906 TCTATATACTCCCTCCGTCCG 57.376 52.381 0.00 0.00 0.00 4.79
2494 3288 2.238144 TCTATATACTCCCTCCGTCCGG 59.762 54.545 0.00 0.00 0.00 5.14
2495 3289 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
2496 3290 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
2497 3291 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2498 3292 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2499 3293 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2500 3294 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2501 3295 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2502 3296 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2503 3297 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2504 3298 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2505 3299 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2506 3300 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2507 3301 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
2508 3302 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
2509 3303 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
2510 3304 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
2511 3305 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
2512 3306 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2513 3307 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
2514 3308 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2515 3309 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
2516 3310 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
2517 3311 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
2518 3312 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
2524 3318 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
2525 3319 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
2526 3320 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
2527 3321 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
2528 3322 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
2529 3323 6.902416 TCATCAAAATGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 33.42 3.06
2530 3324 8.064389 TCATCAAAATGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 33.42 2.29
2531 3325 8.873144 CATCAAAATGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
2532 3326 8.477419 TCAAAATGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
2533 3327 8.288812 TCAAAATGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
2534 3328 9.586732 CAAAATGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
2535 3329 9.813826 AAAATGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
2536 3330 8.757307 AATGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
2537 3331 7.554959 TGGATAAAAGGGGATGTATCTAGAC 57.445 40.000 0.00 0.00 0.00 2.59
2538 3332 6.210784 TGGATAAAAGGGGATGTATCTAGACG 59.789 42.308 0.00 0.00 0.00 4.18
2539 3333 6.210984 GGATAAAAGGGGATGTATCTAGACGT 59.789 42.308 0.00 0.00 0.00 4.34
2540 3334 7.395489 GGATAAAAGGGGATGTATCTAGACGTA 59.605 40.741 0.00 0.00 0.00 3.57
2541 3335 8.896722 ATAAAAGGGGATGTATCTAGACGTAT 57.103 34.615 0.00 0.00 0.00 3.06
2542 3336 7.613551 AAAAGGGGATGTATCTAGACGTATT 57.386 36.000 0.00 0.00 0.00 1.89
2543 3337 7.613551 AAAGGGGATGTATCTAGACGTATTT 57.386 36.000 0.00 0.00 0.00 1.40
2544 3338 7.613551 AAGGGGATGTATCTAGACGTATTTT 57.386 36.000 0.00 0.00 0.00 1.82
2545 3339 8.716674 AAGGGGATGTATCTAGACGTATTTTA 57.283 34.615 0.00 0.00 0.00 1.52
2546 3340 8.350852 AGGGGATGTATCTAGACGTATTTTAG 57.649 38.462 0.00 0.00 0.00 1.85
2547 3341 7.949006 AGGGGATGTATCTAGACGTATTTTAGT 59.051 37.037 0.00 0.00 0.00 2.24
2548 3342 8.583296 GGGGATGTATCTAGACGTATTTTAGTT 58.417 37.037 0.00 0.00 0.00 2.24
2549 3343 9.623350 GGGATGTATCTAGACGTATTTTAGTTC 57.377 37.037 0.00 0.00 0.00 3.01
2557 3351 9.117183 TCTAGACGTATTTTAGTTCTAGATGCA 57.883 33.333 0.00 0.00 32.48 3.96
2558 3352 9.900710 CTAGACGTATTTTAGTTCTAGATGCAT 57.099 33.333 0.00 0.00 0.00 3.96
2559 3353 8.804688 AGACGTATTTTAGTTCTAGATGCATC 57.195 34.615 19.37 19.37 0.00 3.91
2560 3354 8.634444 AGACGTATTTTAGTTCTAGATGCATCT 58.366 33.333 30.85 30.85 40.86 2.90
2561 3355 8.804688 ACGTATTTTAGTTCTAGATGCATCTC 57.195 34.615 31.92 17.75 38.32 2.75
2562 3356 8.634444 ACGTATTTTAGTTCTAGATGCATCTCT 58.366 33.333 31.92 23.41 38.32 3.10
2563 3357 9.469807 CGTATTTTAGTTCTAGATGCATCTCTT 57.530 33.333 31.92 12.27 38.32 2.85
2570 3364 8.900983 AGTTCTAGATGCATCTCTTTTTATCC 57.099 34.615 31.92 11.52 38.32 2.59
2571 3365 8.489489 AGTTCTAGATGCATCTCTTTTTATCCA 58.511 33.333 31.92 10.19 38.32 3.41
2572 3366 9.282569 GTTCTAGATGCATCTCTTTTTATCCAT 57.717 33.333 31.92 6.97 38.32 3.41
2573 3367 9.857656 TTCTAGATGCATCTCTTTTTATCCATT 57.142 29.630 31.92 6.52 38.32 3.16
2574 3368 9.857656 TCTAGATGCATCTCTTTTTATCCATTT 57.142 29.630 31.92 5.86 38.32 2.32
2577 3371 8.974238 AGATGCATCTCTTTTTATCCATTTTGA 58.026 29.630 23.75 0.00 29.30 2.69
2578 3372 9.760077 GATGCATCTCTTTTTATCCATTTTGAT 57.240 29.630 19.70 0.00 0.00 2.57
2579 3373 8.936070 TGCATCTCTTTTTATCCATTTTGATG 57.064 30.769 0.00 0.00 0.00 3.07
2580 3374 8.751242 TGCATCTCTTTTTATCCATTTTGATGA 58.249 29.630 0.00 0.00 32.05 2.92
2581 3375 9.028185 GCATCTCTTTTTATCCATTTTGATGAC 57.972 33.333 0.00 0.00 32.05 3.06
2585 3379 9.918630 CTCTTTTTATCCATTTTGATGACAAGT 57.081 29.630 0.00 0.00 37.32 3.16
2592 3386 8.915871 ATCCATTTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
2593 3387 7.312154 TCCATTTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
2594 3388 7.175816 TCCATTTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
2595 3389 7.273381 CCATTTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
2596 3390 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2597 3391 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2598 3392 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2599 3393 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2600 3394 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2601 3395 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2602 3396 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2603 3397 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2623 3417 7.793036 AGGGAGTAGATGTTAAGTATGTTTCC 58.207 38.462 0.00 0.00 0.00 3.13
2719 3514 8.969260 ATTCACACTAAGCAGATATTGATCAA 57.031 30.769 11.26 11.26 34.17 2.57
2779 3574 3.715628 AGCTGTCCATTTGTGAACAAC 57.284 42.857 0.00 0.00 35.28 3.32
2937 3733 6.342338 ACCATAAGATCTATTGTACCCGTC 57.658 41.667 0.00 0.00 0.00 4.79
2945 3741 3.761218 TCTATTGTACCCGTCGTTTACCA 59.239 43.478 0.00 0.00 0.00 3.25
2969 3766 8.157476 CCAAATACTAGTAGCCTCCATGTTTAT 58.843 37.037 8.85 0.00 0.00 1.40
2970 3767 8.993121 CAAATACTAGTAGCCTCCATGTTTATG 58.007 37.037 8.85 0.00 0.00 1.90
2971 3768 7.857404 ATACTAGTAGCCTCCATGTTTATGT 57.143 36.000 8.85 0.00 32.21 2.29
3015 3812 5.346551 TCTTTCATTCGATTGCAGCAATTTG 59.653 36.000 21.73 16.65 33.90 2.32
3044 3841 7.851963 CCTTTCTTTTGCAATAAAACACATGTG 59.148 33.333 24.25 24.25 0.00 3.21
3082 3886 7.121463 TGTGTAATAATACGGGTTCATTTTGCT 59.879 33.333 0.00 0.00 34.60 3.91
3095 3899 2.600470 TTTTGCTTGAGGGTTGCAAG 57.400 45.000 0.00 0.00 45.52 4.01
3149 3953 7.724951 TCATTTTATGATGTGGATGGCAGATTA 59.275 33.333 0.00 0.00 33.59 1.75
3254 4058 3.163467 GCGTTACAGGTATATCCTCCCT 58.837 50.000 0.00 0.00 46.24 4.20
3295 4099 6.403866 TGGTTGAGATTGCAAAACTACAAT 57.596 33.333 1.71 0.00 39.16 2.71
3330 4134 3.305516 GCTGCACCCCAACCCTTG 61.306 66.667 0.00 0.00 0.00 3.61
3704 4543 5.168647 ACCATTTCATCACCATTTGCATT 57.831 34.783 0.00 0.00 0.00 3.56
3817 4656 7.406104 AGCATCCTTAAACTTCTATTTGAGGT 58.594 34.615 8.42 0.00 42.91 3.85
3818 4657 7.890655 AGCATCCTTAAACTTCTATTTGAGGTT 59.109 33.333 8.42 0.00 45.20 3.50
3923 4762 5.488561 TGAATGGATGGGCTATATGCTTCTA 59.511 40.000 0.00 0.00 42.39 2.10
4120 4959 0.940991 GCGTCGGTAAGTGTTTCCGT 60.941 55.000 4.88 0.00 43.94 4.69
4148 4987 4.472108 TGTTACTCCCTCCGTTCCATATTT 59.528 41.667 0.00 0.00 0.00 1.40
4218 5057 9.574577 TTAATATGGAATGGAGGGAGTATGTAT 57.425 33.333 0.00 0.00 0.00 2.29
4392 5231 7.129109 AGTTCGTTGTCCTTTGTATATGTTG 57.871 36.000 0.00 0.00 0.00 3.33
4440 5279 7.771361 TCCCATAATATAAGAGCGTTTTTGTCA 59.229 33.333 0.00 0.00 0.00 3.58
4546 5385 5.237561 GCCAATAGCTTCCTAAGTTAGCTTC 59.762 44.000 4.22 0.00 42.30 3.86
4739 5578 5.673337 TTGTTGCTGAACTGTGTATTCTC 57.327 39.130 0.00 0.00 32.79 2.87
4755 5594 4.840716 ATTCTCCTCTGCTTGACATCTT 57.159 40.909 0.00 0.00 0.00 2.40
4786 5625 1.271856 TATCACCCTCGGACTTTGCA 58.728 50.000 0.00 0.00 0.00 4.08
4815 5654 2.755650 AGTTCCTGTTTGTGTAGCTCG 58.244 47.619 0.00 0.00 0.00 5.03
5282 6127 5.491070 TGTGGGATGTTTCTGTTGATAGAG 58.509 41.667 0.00 0.00 0.00 2.43
5326 6171 6.325804 AGAAAACCCACTATATAAGGCGTACT 59.674 38.462 0.00 0.00 0.00 2.73
5477 6323 5.544562 GGTAATAGCATCTCTTTAGGGTCCT 59.455 44.000 0.00 0.00 0.00 3.85
5793 6641 2.401720 GCGAAAGAAAACAGCACAATCG 59.598 45.455 0.00 0.00 0.00 3.34
5825 6673 9.965824 ACAGTTGTACTCCTTGAATTATTTTTG 57.034 29.630 0.00 0.00 0.00 2.44
6070 7290 6.630444 AACGATAGCTAGATAAACGGAGAA 57.370 37.500 17.43 0.00 42.67 2.87
6115 7335 2.234296 CCTGTCCCTTCCCCTTGCT 61.234 63.158 0.00 0.00 0.00 3.91
6151 7371 2.092699 GGTAGTACTCCTCCGTGTAGGT 60.093 54.545 0.00 0.00 41.99 3.08
6185 7405 4.395583 GGGTCGTCGTCGTCGCTT 62.396 66.667 7.01 0.00 35.90 4.68
6321 7541 1.005340 CGCTCAGACTCTTTGATGCC 58.995 55.000 0.00 0.00 0.00 4.40
6373 7593 3.842923 CGCCCCGCATCTGTCTCT 61.843 66.667 0.00 0.00 0.00 3.10
6377 7597 2.580815 CCGCATCTGTCTCTGCCA 59.419 61.111 0.00 0.00 34.89 4.92
6427 7647 2.297315 CGGGAGCTGCTTCTATGTATCA 59.703 50.000 8.06 0.00 0.00 2.15
6442 7662 2.124903 GTATCAATCGACGCGGACATT 58.875 47.619 12.47 1.51 0.00 2.71
6463 7683 1.315690 CGTAGATGCGGGAGGAACTA 58.684 55.000 0.00 0.00 41.55 2.24
6523 7743 2.291465 TCAATTCGGGTATCCTCGTACG 59.709 50.000 9.53 9.53 0.00 3.67
6524 7744 0.595095 ATTCGGGTATCCTCGTACGC 59.405 55.000 11.24 0.00 35.04 4.42
6526 7746 2.641559 GGGTATCCTCGTACGCGG 59.358 66.667 18.18 18.18 38.89 6.46
6527 7747 1.893808 GGGTATCCTCGTACGCGGA 60.894 63.158 27.61 27.61 38.89 5.54
6528 7748 1.281049 GGTATCCTCGTACGCGGAC 59.719 63.158 27.95 17.02 38.89 4.79
6529 7749 1.162800 GGTATCCTCGTACGCGGACT 61.163 60.000 27.95 18.59 38.89 3.85
6530 7750 0.234365 GTATCCTCGTACGCGGACTC 59.766 60.000 27.95 19.13 38.89 3.36
6531 7751 0.882042 TATCCTCGTACGCGGACTCC 60.882 60.000 27.95 0.00 38.89 3.85
6554 7785 2.742372 GGCACGAGCATCCAACGT 60.742 61.111 7.26 0.00 44.61 3.99
6556 7787 2.027073 GCACGAGCATCCAACGTCA 61.027 57.895 0.00 0.00 41.58 4.35
6671 7902 3.240134 ATTGCGTCGCCAGACCACT 62.240 57.895 15.88 0.00 44.28 4.00
6833 10728 1.864669 CCACATATGGGCTGGGTTTT 58.135 50.000 7.80 0.00 43.04 2.43
6840 10735 2.123033 GGCTGGGTTTTGGGGTGT 60.123 61.111 0.00 0.00 0.00 4.16
6865 10760 2.522436 CCCGGACGTATAGGGCCA 60.522 66.667 17.37 0.00 38.51 5.36
7074 10972 3.317711 TCGCCAGAAATTCAAGAAGCAAA 59.682 39.130 0.00 0.00 0.00 3.68
7108 11006 7.125507 ACCCTTGGATGTCAATATGCAAAATTA 59.874 33.333 0.00 0.00 37.82 1.40
7246 11144 4.638304 TCCTTTTCGCTTAGGTATATGGC 58.362 43.478 0.00 0.00 33.15 4.40
7306 11205 4.508861 CCACAAGAATGCTGTTCTTTTTGG 59.491 41.667 18.14 18.14 36.69 3.28
7441 11340 6.899393 TTGCCTGAAATATTTGTGAGTCTT 57.101 33.333 5.17 0.00 0.00 3.01
7511 11410 7.973388 TCACTTTGAAGTTTGATGTAACTTTGG 59.027 33.333 0.00 0.00 45.68 3.28
7518 11417 6.314917 AGTTTGATGTAACTTTGGATCCCTT 58.685 36.000 9.90 0.00 34.81 3.95
7625 11524 8.251026 TGTTATAGATAGGTGCAAATCTATCGG 58.749 37.037 21.72 0.00 42.01 4.18
7632 11531 2.032178 GTGCAAATCTATCGGTTCCTGC 59.968 50.000 0.00 0.00 0.00 4.85
7687 11586 0.674895 GCATTCTGACTGAAGCGGGT 60.675 55.000 0.00 0.00 38.18 5.28
7729 11628 5.756195 TCAACATATGCTGCCATTTAGTC 57.244 39.130 1.58 0.00 32.85 2.59
7730 11629 4.273235 TCAACATATGCTGCCATTTAGTCG 59.727 41.667 1.58 0.00 32.85 4.18
7743 11870 6.653320 TGCCATTTAGTCGTCTTTTCTTACAT 59.347 34.615 0.00 0.00 0.00 2.29
7816 11943 1.314534 TGACATTCATGCGGCCCTTG 61.315 55.000 0.00 0.00 0.00 3.61
7821 11948 2.361610 CATGCGGCCCTTGGAGTT 60.362 61.111 0.00 0.00 0.00 3.01
7891 12018 8.699130 TCATCTGACAGTGTCAACATATTATCT 58.301 33.333 25.41 0.00 42.26 1.98
7912 12039 5.122519 TCTCAGTTGTGTATGTTTGCTTCA 58.877 37.500 0.00 0.00 0.00 3.02
7929 12056 5.177326 TGCTTCAATGTTGCAAAAAGAAGT 58.823 33.333 24.55 0.00 34.90 3.01
7930 12057 5.063691 TGCTTCAATGTTGCAAAAAGAAGTG 59.936 36.000 24.55 10.77 34.90 3.16
7931 12058 5.502869 GCTTCAATGTTGCAAAAAGAAGTGG 60.503 40.000 24.55 10.56 34.90 4.00
7932 12059 5.083533 TCAATGTTGCAAAAAGAAGTGGT 57.916 34.783 0.00 0.00 0.00 4.16
7933 12060 6.214191 TCAATGTTGCAAAAAGAAGTGGTA 57.786 33.333 0.00 0.00 0.00 3.25
7934 12061 6.272318 TCAATGTTGCAAAAAGAAGTGGTAG 58.728 36.000 0.00 0.00 0.00 3.18
7935 12062 4.647424 TGTTGCAAAAAGAAGTGGTAGG 57.353 40.909 0.00 0.00 0.00 3.18
7936 12063 3.181480 TGTTGCAAAAAGAAGTGGTAGGC 60.181 43.478 0.00 0.00 0.00 3.93
7937 12064 2.660572 TGCAAAAAGAAGTGGTAGGCA 58.339 42.857 0.00 0.00 0.00 4.75
7938 12065 3.027412 TGCAAAAAGAAGTGGTAGGCAA 58.973 40.909 0.00 0.00 0.00 4.52
7939 12066 3.449018 TGCAAAAAGAAGTGGTAGGCAAA 59.551 39.130 0.00 0.00 0.00 3.68
7940 12067 4.081420 TGCAAAAAGAAGTGGTAGGCAAAA 60.081 37.500 0.00 0.00 0.00 2.44
7941 12068 4.873259 GCAAAAAGAAGTGGTAGGCAAAAA 59.127 37.500 0.00 0.00 0.00 1.94
7942 12069 5.006649 GCAAAAAGAAGTGGTAGGCAAAAAG 59.993 40.000 0.00 0.00 0.00 2.27
7943 12070 6.337356 CAAAAAGAAGTGGTAGGCAAAAAGA 58.663 36.000 0.00 0.00 0.00 2.52
8029 12156 4.922206 TGGAGATTTTGTAGGAGTTGCAT 58.078 39.130 0.00 0.00 0.00 3.96
8030 12157 5.324409 TGGAGATTTTGTAGGAGTTGCATT 58.676 37.500 0.00 0.00 0.00 3.56
8081 12214 7.615365 TCAAAGGGCAATTCTGTAATATTCTGT 59.385 33.333 0.00 0.00 0.00 3.41
8083 12216 7.961326 AGGGCAATTCTGTAATATTCTGTTT 57.039 32.000 0.00 0.00 0.00 2.83
8193 12881 9.000486 GGATTAAGTTATCATTACAACCCTAGC 58.000 37.037 0.00 0.00 0.00 3.42
8198 12886 3.965379 TCATTACAACCCTAGCGAACA 57.035 42.857 0.00 0.00 0.00 3.18
8199 12887 3.592059 TCATTACAACCCTAGCGAACAC 58.408 45.455 0.00 0.00 0.00 3.32
8200 12888 3.259876 TCATTACAACCCTAGCGAACACT 59.740 43.478 0.00 0.00 0.00 3.55
8201 12889 4.463539 TCATTACAACCCTAGCGAACACTA 59.536 41.667 0.00 0.00 0.00 2.74
8202 12890 4.870123 TTACAACCCTAGCGAACACTAA 57.130 40.909 0.00 0.00 0.00 2.24
8349 13112 2.028112 TGTGGTGGTGAGCTGAGAATAC 60.028 50.000 0.00 0.00 0.00 1.89
8351 13114 3.447586 GTGGTGGTGAGCTGAGAATACTA 59.552 47.826 0.00 0.00 0.00 1.82
8401 14669 1.656095 CGAGCTGAACTTTTAGGCGAG 59.344 52.381 0.00 0.00 0.00 5.03
8429 14741 6.720112 ATCAATGGTTGGATTTGGTCATAG 57.280 37.500 0.00 0.00 0.00 2.23
8451 14763 8.916654 CATAGAACGATTCGAAGCATTATAACT 58.083 33.333 14.56 0.45 34.02 2.24
8489 14801 9.941325 AAGAAAGCTACATATAGGATGAAGATG 57.059 33.333 0.00 0.00 0.00 2.90
8490 14802 8.040132 AGAAAGCTACATATAGGATGAAGATGC 58.960 37.037 0.00 0.00 0.00 3.91
8494 14806 5.474578 ACATATAGGATGAAGATGCGTGT 57.525 39.130 0.00 0.00 0.00 4.49
8495 14807 5.858381 ACATATAGGATGAAGATGCGTGTT 58.142 37.500 0.00 0.00 0.00 3.32
8532 14844 1.927210 CCGTTCGATCCATTGCGAG 59.073 57.895 0.00 0.00 37.85 5.03
8536 14848 3.049912 CGTTCGATCCATTGCGAGATAA 58.950 45.455 0.00 0.00 37.85 1.75
8571 14883 3.305539 GCTGATGAAGTTTGCAACATGGA 60.306 43.478 0.00 0.00 0.00 3.41
8572 14884 4.619863 GCTGATGAAGTTTGCAACATGGAT 60.620 41.667 0.00 0.00 0.00 3.41
8573 14885 5.063180 TGATGAAGTTTGCAACATGGATC 57.937 39.130 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 0.677288 CGACCCACTACAGGTTGTGA 59.323 55.000 14.14 0.00 37.88 3.58
23 24 0.683504 ACTAGGCCGACCCACTACAG 60.684 60.000 0.00 0.00 36.11 2.74
194 206 4.809815 ATTGCCCAAACAAATTTTGACG 57.190 36.364 15.81 3.71 32.27 4.35
500 527 7.416817 CACATTGAACATTTTCTGACTACACA 58.583 34.615 0.00 0.00 32.36 3.72
506 533 6.774354 ATTGCACATTGAACATTTTCTGAC 57.226 33.333 0.00 0.00 32.36 3.51
681 1259 8.854614 AGTCTTACATTTCTTTACAGAGCAAT 57.145 30.769 0.00 0.00 0.00 3.56
682 1260 8.677148 AAGTCTTACATTTCTTTACAGAGCAA 57.323 30.769 0.00 0.00 0.00 3.91
683 1261 8.677148 AAAGTCTTACATTTCTTTACAGAGCA 57.323 30.769 0.00 0.00 0.00 4.26
684 1262 8.994170 AGAAAGTCTTACATTTCTTTACAGAGC 58.006 33.333 0.00 0.00 41.77 4.09
761 1339 2.488639 TGTACGCACGTCAACAGTTA 57.511 45.000 0.00 0.00 0.00 2.24
766 1344 0.713883 CTCCATGTACGCACGTCAAC 59.286 55.000 0.00 0.00 0.00 3.18
769 1347 1.445410 TGCTCCATGTACGCACGTC 60.445 57.895 0.00 0.00 0.00 4.34
770 1348 1.736645 GTGCTCCATGTACGCACGT 60.737 57.895 13.19 0.00 43.63 4.49
771 1349 3.081133 GTGCTCCATGTACGCACG 58.919 61.111 13.19 0.00 43.63 5.34
775 1353 1.135112 TGCTACAGTGCTCCATGTACG 60.135 52.381 0.00 0.00 36.37 3.67
777 1355 1.134699 GCTGCTACAGTGCTCCATGTA 60.135 52.381 0.00 0.00 33.43 2.29
778 1356 0.392193 GCTGCTACAGTGCTCCATGT 60.392 55.000 0.00 0.00 33.43 3.21
779 1357 0.392060 TGCTGCTACAGTGCTCCATG 60.392 55.000 0.00 0.00 33.43 3.66
820 1558 5.168569 CACCTATTGCGAGACAGAAACTAA 58.831 41.667 0.00 0.00 0.00 2.24
821 1559 4.381612 CCACCTATTGCGAGACAGAAACTA 60.382 45.833 0.00 0.00 0.00 2.24
842 1580 0.335361 GGACTGTCTAGGAGGTCCCA 59.665 60.000 7.85 0.00 41.48 4.37
849 1587 2.043115 ACCATGTCTGGACTGTCTAGGA 59.957 50.000 19.28 8.43 46.37 2.94
850 1588 2.461695 ACCATGTCTGGACTGTCTAGG 58.538 52.381 19.28 7.89 46.37 3.02
851 1589 4.438880 CGTTACCATGTCTGGACTGTCTAG 60.439 50.000 14.32 14.32 46.37 2.43
852 1590 3.442625 CGTTACCATGTCTGGACTGTCTA 59.557 47.826 7.85 0.00 46.37 2.59
853 1591 2.231478 CGTTACCATGTCTGGACTGTCT 59.769 50.000 7.85 0.00 46.37 3.41
854 1592 2.607187 CGTTACCATGTCTGGACTGTC 58.393 52.381 0.00 0.00 46.37 3.51
855 1593 1.275291 CCGTTACCATGTCTGGACTGT 59.725 52.381 0.00 0.00 46.37 3.55
856 1594 1.405526 CCCGTTACCATGTCTGGACTG 60.406 57.143 0.00 0.00 46.37 3.51
857 1595 0.902531 CCCGTTACCATGTCTGGACT 59.097 55.000 0.00 0.00 46.37 3.85
858 1596 0.743345 GCCCGTTACCATGTCTGGAC 60.743 60.000 0.00 0.00 46.37 4.02
936 1701 3.992641 TGGGAGTGGAGAGGGCGA 61.993 66.667 0.00 0.00 0.00 5.54
937 1702 3.775654 GTGGGAGTGGAGAGGGCG 61.776 72.222 0.00 0.00 0.00 6.13
938 1703 2.284995 AGTGGGAGTGGAGAGGGC 60.285 66.667 0.00 0.00 0.00 5.19
939 1704 2.055042 CGAGTGGGAGTGGAGAGGG 61.055 68.421 0.00 0.00 0.00 4.30
941 1706 2.888863 GCGAGTGGGAGTGGAGAG 59.111 66.667 0.00 0.00 0.00 3.20
942 1707 3.062466 CGCGAGTGGGAGTGGAGA 61.062 66.667 0.00 0.00 0.00 3.71
944 1709 3.371063 GTCGCGAGTGGGAGTGGA 61.371 66.667 10.24 0.00 37.78 4.02
945 1710 3.633094 CTGTCGCGAGTGGGAGTGG 62.633 68.421 10.24 0.00 37.78 4.00
1060 1828 3.873026 GAGATCCCATGCCGCCGAG 62.873 68.421 0.00 0.00 0.00 4.63
1208 1976 4.997395 GGAGAATTGAGAAAGTGTGTGCTA 59.003 41.667 0.00 0.00 0.00 3.49
1296 2064 5.135383 AGTAAACAAAACCCTAACTCCACC 58.865 41.667 0.00 0.00 0.00 4.61
1348 2116 2.016393 GCGACGATCCCATGGACAGA 62.016 60.000 15.22 1.77 32.98 3.41
1349 2117 1.592669 GCGACGATCCCATGGACAG 60.593 63.158 15.22 4.06 32.98 3.51
1350 2118 2.499205 GCGACGATCCCATGGACA 59.501 61.111 15.22 0.00 32.98 4.02
1351 2119 2.280186 GGCGACGATCCCATGGAC 60.280 66.667 15.22 3.31 32.98 4.02
1352 2120 2.099652 GATGGCGACGATCCCATGGA 62.100 60.000 15.22 0.00 41.74 3.41
1353 2121 1.669115 GATGGCGACGATCCCATGG 60.669 63.158 4.14 4.14 41.74 3.66
1354 2122 2.023771 CGATGGCGACGATCCCATG 61.024 63.158 9.81 0.00 41.74 3.66
1355 2123 2.200337 TCGATGGCGACGATCCCAT 61.200 57.895 0.00 1.46 44.25 4.00
1356 2124 2.831284 TCGATGGCGACGATCCCA 60.831 61.111 0.00 0.00 42.51 4.37
1379 2147 3.990959 AAGGAACCTCAGACATCCTTC 57.009 47.619 0.18 0.00 46.70 3.46
1446 2230 3.056465 AGCCCTAACTATGCGAGCTTATC 60.056 47.826 0.00 0.00 0.00 1.75
1579 2365 0.464036 GACCCACACGGAGCATGATA 59.536 55.000 0.00 0.00 34.64 2.15
1596 2382 3.692791 AAGCCAAACGAAACTTCAGAC 57.307 42.857 0.00 0.00 0.00 3.51
1607 2393 0.671251 TTACCTGCCAAAGCCAAACG 59.329 50.000 0.00 0.00 38.69 3.60
1629 2415 5.104374 GTGATTCAAACAGTGGCCATAATG 58.896 41.667 9.72 11.55 0.00 1.90
1742 2534 3.185188 CCTCCATTCAGAATAATGACGCG 59.815 47.826 3.53 3.53 38.84 6.01
1774 2566 2.203401 CATTTGGGCAACAACAGTGTG 58.797 47.619 0.00 0.00 39.19 3.82
1980 2772 7.923344 CCTGGTGTAATTAGTGTATTCTGAGAG 59.077 40.741 0.00 0.00 0.00 3.20
2009 2801 6.019640 CACCAACACAACATAAAGCTCAAAAG 60.020 38.462 0.00 0.00 0.00 2.27
2261 3055 8.184192 AGTTAATTGAGTGAACAGAAAACTGTG 58.816 33.333 3.65 0.00 37.66 3.66
2266 3060 9.119418 TCATGAGTTAATTGAGTGAACAGAAAA 57.881 29.630 0.00 0.00 0.00 2.29
2321 3115 0.758310 TGCCACAGCCAACATCCAAA 60.758 50.000 0.00 0.00 38.69 3.28
2336 3130 0.394938 TAGAAAGAACGCCAGTGCCA 59.605 50.000 0.00 0.00 0.00 4.92
2440 3234 7.112148 CACTTAGAAAGCAGACGTTCAAATTTC 59.888 37.037 0.00 0.00 36.82 2.17
2451 3245 3.686916 AGGGACACTTAGAAAGCAGAC 57.313 47.619 0.00 0.00 0.00 3.51
2479 3273 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2480 3274 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2481 3275 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2482 3276 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2483 3277 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2484 3278 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2485 3279 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2486 3280 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
2487 3281 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2488 3282 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2489 3283 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2490 3284 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
2491 3285 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
2492 3286 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
2498 3292 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
2499 3293 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
2500 3294 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
2501 3295 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
2502 3296 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
2503 3297 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
2504 3298 6.902416 ACATCCCCTTTTATCCATTTTGATGA 59.098 34.615 0.00 0.00 32.39 2.92
2505 3299 7.128234 ACATCCCCTTTTATCCATTTTGATG 57.872 36.000 0.00 0.00 33.80 3.07
2506 3300 9.093458 GATACATCCCCTTTTATCCATTTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
2507 3301 8.288812 AGATACATCCCCTTTTATCCATTTTGA 58.711 33.333 0.00 0.00 0.00 2.69
2508 3302 8.482852 AGATACATCCCCTTTTATCCATTTTG 57.517 34.615 0.00 0.00 0.00 2.44
2509 3303 9.813826 CTAGATACATCCCCTTTTATCCATTTT 57.186 33.333 0.00 0.00 0.00 1.82
2510 3304 9.182642 TCTAGATACATCCCCTTTTATCCATTT 57.817 33.333 0.00 0.00 0.00 2.32
2511 3305 8.606830 GTCTAGATACATCCCCTTTTATCCATT 58.393 37.037 0.00 0.00 0.00 3.16
2512 3306 7.093289 CGTCTAGATACATCCCCTTTTATCCAT 60.093 40.741 0.00 0.00 0.00 3.41
2513 3307 6.210784 CGTCTAGATACATCCCCTTTTATCCA 59.789 42.308 0.00 0.00 0.00 3.41
2514 3308 6.210984 ACGTCTAGATACATCCCCTTTTATCC 59.789 42.308 0.00 0.00 0.00 2.59
2515 3309 7.229581 ACGTCTAGATACATCCCCTTTTATC 57.770 40.000 0.00 0.00 0.00 1.75
2516 3310 8.896722 ATACGTCTAGATACATCCCCTTTTAT 57.103 34.615 0.00 0.00 0.00 1.40
2517 3311 8.716674 AATACGTCTAGATACATCCCCTTTTA 57.283 34.615 0.00 0.00 0.00 1.52
2518 3312 7.613551 AATACGTCTAGATACATCCCCTTTT 57.386 36.000 0.00 0.00 0.00 2.27
2519 3313 7.613551 AAATACGTCTAGATACATCCCCTTT 57.386 36.000 0.00 0.00 0.00 3.11
2520 3314 7.613551 AAAATACGTCTAGATACATCCCCTT 57.386 36.000 0.00 0.00 0.00 3.95
2521 3315 7.949006 ACTAAAATACGTCTAGATACATCCCCT 59.051 37.037 0.00 0.00 0.00 4.79
2522 3316 8.120140 ACTAAAATACGTCTAGATACATCCCC 57.880 38.462 0.00 0.00 0.00 4.81
2523 3317 9.623350 GAACTAAAATACGTCTAGATACATCCC 57.377 37.037 0.00 0.00 0.00 3.85
2531 3325 9.117183 TGCATCTAGAACTAAAATACGTCTAGA 57.883 33.333 10.27 10.27 38.94 2.43
2532 3326 9.900710 ATGCATCTAGAACTAAAATACGTCTAG 57.099 33.333 0.00 0.00 0.00 2.43
2533 3327 9.894783 GATGCATCTAGAACTAAAATACGTCTA 57.105 33.333 19.70 0.00 0.00 2.59
2534 3328 8.634444 AGATGCATCTAGAACTAAAATACGTCT 58.366 33.333 27.73 0.00 34.85 4.18
2535 3329 8.804688 AGATGCATCTAGAACTAAAATACGTC 57.195 34.615 27.73 0.00 34.85 4.34
2536 3330 8.634444 AGAGATGCATCTAGAACTAAAATACGT 58.366 33.333 28.78 0.75 37.25 3.57
2537 3331 9.469807 AAGAGATGCATCTAGAACTAAAATACG 57.530 33.333 28.78 0.00 37.25 3.06
2544 3338 9.988815 GGATAAAAAGAGATGCATCTAGAACTA 57.011 33.333 28.78 17.06 37.25 2.24
2545 3339 8.489489 TGGATAAAAAGAGATGCATCTAGAACT 58.511 33.333 28.78 18.25 37.25 3.01
2546 3340 8.668510 TGGATAAAAAGAGATGCATCTAGAAC 57.331 34.615 28.78 16.26 37.25 3.01
2547 3341 9.857656 AATGGATAAAAAGAGATGCATCTAGAA 57.142 29.630 28.78 11.82 37.25 2.10
2548 3342 9.857656 AAATGGATAAAAAGAGATGCATCTAGA 57.142 29.630 28.78 10.98 37.25 2.43
2551 3345 8.974238 TCAAAATGGATAAAAAGAGATGCATCT 58.026 29.630 29.09 29.09 40.50 2.90
2552 3346 9.760077 ATCAAAATGGATAAAAAGAGATGCATC 57.240 29.630 19.37 19.37 33.50 3.91
2553 3347 9.542462 CATCAAAATGGATAAAAAGAGATGCAT 57.458 29.630 0.00 0.00 35.84 3.96
2554 3348 8.751242 TCATCAAAATGGATAAAAAGAGATGCA 58.249 29.630 0.00 0.00 33.42 3.96
2555 3349 9.028185 GTCATCAAAATGGATAAAAAGAGATGC 57.972 33.333 0.00 0.00 33.42 3.91
2559 3353 9.918630 ACTTGTCATCAAAATGGATAAAAAGAG 57.081 29.630 0.00 0.00 33.42 2.85
2567 3361 7.975616 CCGAAAATACTTGTCATCAAAATGGAT 59.024 33.333 0.00 0.00 33.42 3.41
2568 3362 7.175816 TCCGAAAATACTTGTCATCAAAATGGA 59.824 33.333 0.00 0.00 33.42 3.41
2569 3363 7.273381 GTCCGAAAATACTTGTCATCAAAATGG 59.727 37.037 0.00 0.00 33.42 3.16
2570 3364 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
2571 3365 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2572 3366 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2573 3367 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2574 3368 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2575 3369 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2576 3370 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2577 3371 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2578 3372 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2579 3373 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2580 3374 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2581 3375 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2582 3376 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2583 3377 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2584 3378 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2585 3379 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
2586 3380 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
2587 3381 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
2588 3382 0.329261 TCTACTCCCTCCGTCCGAAA 59.671 55.000 0.00 0.00 0.00 3.46
2589 3383 0.549950 ATCTACTCCCTCCGTCCGAA 59.450 55.000 0.00 0.00 0.00 4.30
2590 3384 0.179026 CATCTACTCCCTCCGTCCGA 60.179 60.000 0.00 0.00 0.00 4.55
2591 3385 0.465824 ACATCTACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
2592 3386 1.777941 AACATCTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
2593 3387 3.952967 ACTTAACATCTACTCCCTCCGTC 59.047 47.826 0.00 0.00 0.00 4.79
2594 3388 3.978610 ACTTAACATCTACTCCCTCCGT 58.021 45.455 0.00 0.00 0.00 4.69
2595 3389 5.535406 ACATACTTAACATCTACTCCCTCCG 59.465 44.000 0.00 0.00 0.00 4.63
2596 3390 6.980416 ACATACTTAACATCTACTCCCTCC 57.020 41.667 0.00 0.00 0.00 4.30
2597 3391 7.927092 GGAAACATACTTAACATCTACTCCCTC 59.073 40.741 0.00 0.00 0.00 4.30
2598 3392 7.402071 TGGAAACATACTTAACATCTACTCCCT 59.598 37.037 0.00 0.00 33.40 4.20
2599 3393 7.562135 TGGAAACATACTTAACATCTACTCCC 58.438 38.462 0.00 0.00 33.40 4.30
2600 3394 9.614792 ATTGGAAACATACTTAACATCTACTCC 57.385 33.333 0.00 0.00 42.32 3.85
2661 3456 7.390718 AGCGACCAACTTATACAGAAAGAAAAT 59.609 33.333 0.00 0.00 0.00 1.82
2853 3649 9.774742 CTTTTTAAATGACTATCTGGTGCTAAC 57.225 33.333 0.00 0.00 0.00 2.34
2937 3733 5.981915 GGAGGCTACTAGTATTTGGTAAACG 59.018 44.000 2.33 0.00 0.00 3.60
2945 3741 8.714906 ACATAAACATGGAGGCTACTAGTATTT 58.285 33.333 2.33 0.79 0.00 1.40
2969 3766 6.808829 AGATGATTCAAAGCACAGAAAAACA 58.191 32.000 0.00 0.00 0.00 2.83
2970 3767 7.704789 AAGATGATTCAAAGCACAGAAAAAC 57.295 32.000 0.00 0.00 0.00 2.43
2971 3768 7.980662 TGAAAGATGATTCAAAGCACAGAAAAA 59.019 29.630 0.00 0.00 36.42 1.94
3015 3812 4.819088 TGTTTTATTGCAAAAGAAAGGGCC 59.181 37.500 1.71 0.00 0.00 5.80
3044 3841 8.380644 CCGTATTATTACACAGCAATATAGCAC 58.619 37.037 0.00 0.00 36.85 4.40
3082 3886 2.733956 AGAACAACTTGCAACCCTCAA 58.266 42.857 0.00 0.00 0.00 3.02
3254 4058 7.343316 TCTCAACCATAAAGGAAAAACCAAGAA 59.657 33.333 0.00 0.00 41.22 2.52
3295 4099 8.463607 GGGTGCAGCACTAGTTTATTAAATTAA 58.536 33.333 24.75 0.00 34.40 1.40
3330 4134 4.058817 AGCTTTCAAGTAGCACACAGTAC 58.941 43.478 0.00 0.00 41.11 2.73
3462 4301 7.708998 AGAAATTGCAAAAGCATTTCACAAAT 58.291 26.923 19.37 1.88 37.28 2.32
3538 4377 5.333299 TGAAGGAAATGGAATCAGCATTG 57.667 39.130 0.00 0.00 0.00 2.82
3661 4500 4.176271 GTTATGACAGAAATGGCAAAGGC 58.824 43.478 0.00 0.00 40.13 4.35
3817 4656 6.567701 GCAGTCAAGTTCCATAACGATGAAAA 60.568 38.462 0.00 0.00 40.73 2.29
3818 4657 5.106712 GCAGTCAAGTTCCATAACGATGAAA 60.107 40.000 0.00 0.00 40.73 2.69
3823 4662 3.678056 AGCAGTCAAGTTCCATAACGA 57.322 42.857 0.00 0.00 40.73 3.85
3953 4792 7.450074 AGTGATGTGTTGAATAAGTCCAACTA 58.550 34.615 0.00 0.00 42.16 2.24
4020 4859 2.628178 TCCCCAGCATACTCTACAATCG 59.372 50.000 0.00 0.00 0.00 3.34
4120 4959 4.286549 TGGAACGGAGGGAGTAACATTTTA 59.713 41.667 0.00 0.00 0.00 1.52
4148 4987 6.684686 ACTTTGTACTTAATCAGCGACACTA 58.315 36.000 0.00 0.00 0.00 2.74
4203 5042 7.226441 CAAATCATTGATACATACTCCCTCCA 58.774 38.462 0.00 0.00 38.94 3.86
4218 5057 6.897706 TCAATGTCTCAACCAAATCATTGA 57.102 33.333 12.31 12.31 44.40 2.57
4392 5231 5.009510 GGACGGAGGGAGTAGTTATTAAGAC 59.990 48.000 0.00 0.00 0.00 3.01
4440 5279 6.204108 CCGTCCCATATTATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4446 5285 4.141914 CCCTCCGTCCCATATTATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
4451 5290 4.687262 ACTCCCTCCGTCCCATATTATA 57.313 45.455 0.00 0.00 0.00 0.98
4455 5294 1.787676 ACTACTCCCTCCGTCCCATAT 59.212 52.381 0.00 0.00 0.00 1.78
4546 5385 8.461222 TGAGAAACAATAATTAGCTTCCATGTG 58.539 33.333 0.00 0.00 0.00 3.21
4739 5578 3.119919 GCAAAGAAGATGTCAAGCAGAGG 60.120 47.826 0.00 0.00 0.00 3.69
4755 5594 3.609853 GAGGGTGATATGTGTGCAAAGA 58.390 45.455 0.00 0.00 0.00 2.52
4841 5680 8.893727 CAAGGGATCCAGTAAGTTGTATTAAAG 58.106 37.037 15.23 0.00 0.00 1.85
4986 5827 6.601613 TGAATATGTTTCACCATGTTCTACCC 59.398 38.462 10.56 0.00 41.11 3.69
5027 5871 7.119262 TCAGTAGAAACCTAGCTGCAAATTTAC 59.881 37.037 1.02 0.00 0.00 2.01
5028 5872 7.165485 TCAGTAGAAACCTAGCTGCAAATTTA 58.835 34.615 1.02 0.00 0.00 1.40
5029 5873 6.003950 TCAGTAGAAACCTAGCTGCAAATTT 58.996 36.000 1.02 0.00 0.00 1.82
5030 5874 5.560724 TCAGTAGAAACCTAGCTGCAAATT 58.439 37.500 1.02 0.00 0.00 1.82
5031 5875 5.165961 TCAGTAGAAACCTAGCTGCAAAT 57.834 39.130 1.02 0.00 0.00 2.32
5032 5876 4.617253 TCAGTAGAAACCTAGCTGCAAA 57.383 40.909 1.02 0.00 0.00 3.68
5033 5877 4.826274 ATCAGTAGAAACCTAGCTGCAA 57.174 40.909 1.02 0.00 0.00 4.08
5034 5878 6.485830 AATATCAGTAGAAACCTAGCTGCA 57.514 37.500 1.02 0.00 0.00 4.41
5035 5879 8.307483 TCATAATATCAGTAGAAACCTAGCTGC 58.693 37.037 0.00 0.00 0.00 5.25
5102 5946 9.950496 ATAAGATGTTTTAGAGACTTGTGTCAT 57.050 29.630 0.92 0.00 45.20 3.06
5326 6171 8.877195 AGTAAGAATCTAGGTAACACTTTTCCA 58.123 33.333 0.00 0.00 41.41 3.53
5459 6305 2.839228 ACAGGACCCTAAAGAGATGCT 58.161 47.619 0.00 0.00 0.00 3.79
5477 6323 2.286713 CCGACGAAAATGCAACTCAACA 60.287 45.455 0.00 0.00 0.00 3.33
5748 6596 7.589587 CGCATGTCTTCAGTAACTCTATAGAAG 59.410 40.741 3.57 1.21 35.13 2.85
5825 6673 3.924686 CCATGCAGATGAAAAAGACAAGC 59.075 43.478 0.00 0.00 0.00 4.01
5971 7164 1.137479 TGACCCGTTTATCCACGATCC 59.863 52.381 0.00 0.00 43.15 3.36
5977 7170 6.005198 ACAAAACTTATGACCCGTTTATCCA 58.995 36.000 0.00 0.00 31.25 3.41
6070 7290 3.083997 GGTGATGTCCGGCTCCCT 61.084 66.667 0.00 0.00 0.00 4.20
6115 7335 1.147191 ACTACCTCCACTCCTGTGACA 59.853 52.381 0.00 0.00 46.55 3.58
6168 7388 4.395583 AAGCGACGACGACGACCC 62.396 66.667 22.94 5.86 42.66 4.46
6172 7392 3.512452 CGACAAGCGACGACGACG 61.512 66.667 15.13 15.13 44.57 5.12
6175 7395 4.104633 GCACGACAAGCGACGACG 62.105 66.667 2.12 2.12 44.57 5.12
6205 7425 1.152881 GCGGGCATCATCCCTTCTT 60.153 57.895 0.00 0.00 44.30 2.52
6255 7475 3.126879 CGAAAGCGGCATGGCTCA 61.127 61.111 18.09 0.00 43.93 4.26
6421 7641 0.452585 TGTCCGCGTCGATTGATACA 59.547 50.000 4.92 0.00 0.00 2.29
6427 7647 3.089784 GCAATGTCCGCGTCGATT 58.910 55.556 4.92 0.00 0.00 3.34
6442 7662 2.055633 TTCCTCCCGCATCTACGCA 61.056 57.895 0.00 0.00 0.00 5.24
6463 7683 2.685380 CCGAGGGCAGAGGAGGTT 60.685 66.667 0.00 0.00 0.00 3.50
6547 7778 0.039180 TCCTCCTAGCTGACGTTGGA 59.961 55.000 0.00 0.00 0.00 3.53
6601 7832 2.780094 CCGCTGCAGATCCGTCTCT 61.780 63.158 20.43 0.00 30.42 3.10
6642 7873 3.071459 GACGCAATGCAGTCGACCG 62.071 63.158 13.01 9.25 0.00 4.79
6671 7902 2.284625 AGCTCCATGTCGTCCCCA 60.285 61.111 0.00 0.00 0.00 4.96
6718 7949 2.825836 GTCAGCATTGCCCTCCGG 60.826 66.667 4.70 0.00 0.00 5.14
6732 7963 1.578206 CGACGAGGAGCTCACAGTCA 61.578 60.000 24.34 0.00 0.00 3.41
6770 10665 4.111967 TCTGCCACGTCAGATCCA 57.888 55.556 2.98 0.00 38.11 3.41
6865 10760 1.454539 CAACCGGACCCCTCAAACT 59.545 57.895 9.46 0.00 0.00 2.66
6929 10827 4.763355 ACCCCTCATATTGCTCCTATACA 58.237 43.478 0.00 0.00 0.00 2.29
7108 11006 7.066887 CCTTTTTCTTTTTATTGCTTGGGTTGT 59.933 33.333 0.00 0.00 0.00 3.32
7265 11164 5.149973 TGTGGATGTTAGCAATGCAATTT 57.850 34.783 8.35 0.00 31.22 1.82
7306 11205 8.394121 CAAATAAGTAAAGGAGAGTCTGCATTC 58.606 37.037 14.66 3.24 0.00 2.67
7441 11340 4.947388 GGATAACACCAAACCAGAGCAATA 59.053 41.667 0.00 0.00 0.00 1.90
7502 11401 5.535030 ACAGACAAAAGGGATCCAAAGTTAC 59.465 40.000 15.23 0.00 0.00 2.50
7511 11410 2.508526 ACTGCACAGACAAAAGGGATC 58.491 47.619 4.31 0.00 0.00 3.36
7518 11417 2.698274 TCTCCAGTACTGCACAGACAAA 59.302 45.455 17.86 0.00 0.00 2.83
7604 11503 6.295123 GGAACCGATAGATTTGCACCTATCTA 60.295 42.308 19.40 16.16 39.19 1.98
7657 11556 4.828939 TCAGTCAGAATGCTCCAAAATTGT 59.171 37.500 0.00 0.00 34.76 2.71
7687 11586 6.127310 TGTTGATCAATTTGCCATCATGATGA 60.127 34.615 32.71 16.08 41.20 2.92
7729 11628 8.491152 CATGGCTATCTAATGTAAGAAAAGACG 58.509 37.037 0.00 0.00 0.00 4.18
7730 11629 8.286097 GCATGGCTATCTAATGTAAGAAAAGAC 58.714 37.037 0.00 0.00 0.00 3.01
7743 11870 6.359804 AGAAACAATCTGCATGGCTATCTAA 58.640 36.000 0.00 0.00 36.88 2.10
7816 11943 9.654663 ATCTTAGTCTGTTATTACAACAACTCC 57.345 33.333 7.66 0.00 32.92 3.85
7850 11977 3.118665 TCAGATGATGATTTCACAGCCGA 60.119 43.478 0.00 0.00 37.11 5.54
7891 12018 5.826601 TTGAAGCAAACATACACAACTGA 57.173 34.783 0.00 0.00 0.00 3.41
7912 12039 5.600696 CCTACCACTTCTTTTTGCAACATT 58.399 37.500 0.00 0.00 0.00 2.71
7929 12056 3.306472 ACCACTTCTTTTTGCCTACCA 57.694 42.857 0.00 0.00 0.00 3.25
7930 12057 4.395625 ACTACCACTTCTTTTTGCCTACC 58.604 43.478 0.00 0.00 0.00 3.18
7931 12058 6.877322 TGATACTACCACTTCTTTTTGCCTAC 59.123 38.462 0.00 0.00 0.00 3.18
7932 12059 7.011499 TGATACTACCACTTCTTTTTGCCTA 57.989 36.000 0.00 0.00 0.00 3.93
7933 12060 5.876357 TGATACTACCACTTCTTTTTGCCT 58.124 37.500 0.00 0.00 0.00 4.75
7934 12061 6.430000 TCTTGATACTACCACTTCTTTTTGCC 59.570 38.462 0.00 0.00 0.00 4.52
7935 12062 7.435068 TCTTGATACTACCACTTCTTTTTGC 57.565 36.000 0.00 0.00 0.00 3.68
7990 12117 3.071023 TCTCCAGGTAAACTTCCACACAG 59.929 47.826 0.00 0.00 0.00 3.66
8046 12173 2.435938 GCCCTTTGATCGACCGCA 60.436 61.111 0.00 0.00 0.00 5.69
8325 13013 3.349006 CAGCTCACCACCACACGC 61.349 66.667 0.00 0.00 0.00 5.34
8326 13014 1.665916 CTCAGCTCACCACCACACG 60.666 63.158 0.00 0.00 0.00 4.49
8327 13015 0.106708 TTCTCAGCTCACCACCACAC 59.893 55.000 0.00 0.00 0.00 3.82
8328 13016 1.059098 ATTCTCAGCTCACCACCACA 58.941 50.000 0.00 0.00 0.00 4.17
8329 13017 2.234908 AGTATTCTCAGCTCACCACCAC 59.765 50.000 0.00 0.00 0.00 4.16
8330 13018 2.540383 AGTATTCTCAGCTCACCACCA 58.460 47.619 0.00 0.00 0.00 4.17
8332 13020 4.116238 GCTTAGTATTCTCAGCTCACCAC 58.884 47.826 0.00 0.00 37.77 4.16
8333 13021 3.133003 GGCTTAGTATTCTCAGCTCACCA 59.867 47.826 5.63 0.00 39.87 4.17
8335 13023 4.664150 AGGCTTAGTATTCTCAGCTCAC 57.336 45.455 5.63 0.00 39.87 3.51
8336 13024 5.450453 ACTAGGCTTAGTATTCTCAGCTCA 58.550 41.667 6.74 0.00 39.87 4.26
8349 13112 8.582433 GCTTAGTAATTTCTGACTAGGCTTAG 57.418 38.462 11.13 0.48 43.93 2.18
8421 14689 3.119280 TGCTTCGAATCGTTCTATGACCA 60.119 43.478 1.52 0.00 0.00 4.02
8422 14690 3.444916 TGCTTCGAATCGTTCTATGACC 58.555 45.455 1.52 0.00 0.00 4.02
8423 14691 5.643339 AATGCTTCGAATCGTTCTATGAC 57.357 39.130 1.52 0.00 0.00 3.06
8429 14741 7.161829 TCAGTTATAATGCTTCGAATCGTTC 57.838 36.000 9.58 0.00 0.00 3.95
8466 14778 6.815641 CGCATCTTCATCCTATATGTAGCTTT 59.184 38.462 0.00 0.00 0.00 3.51
8467 14779 6.071108 ACGCATCTTCATCCTATATGTAGCTT 60.071 38.462 0.00 0.00 0.00 3.74
8468 14780 5.420421 ACGCATCTTCATCCTATATGTAGCT 59.580 40.000 0.00 0.00 0.00 3.32
8471 14783 6.590234 ACACGCATCTTCATCCTATATGTA 57.410 37.500 0.00 0.00 0.00 2.29
8478 14790 1.742761 CCAACACGCATCTTCATCCT 58.257 50.000 0.00 0.00 0.00 3.24
8485 14797 2.742372 GTCGGCCAACACGCATCT 60.742 61.111 2.24 0.00 0.00 2.90
8490 14802 4.619227 ACCCAGTCGGCCAACACG 62.619 66.667 2.24 0.00 33.26 4.49
8519 14831 3.384668 ACTGTTATCTCGCAATGGATCG 58.615 45.455 0.00 0.00 0.00 3.69
8532 14844 4.662468 TCAGCTGGATCAGACTGTTATC 57.338 45.455 15.13 0.00 37.13 1.75
8536 14848 2.464782 TCATCAGCTGGATCAGACTGT 58.535 47.619 15.13 0.00 37.13 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.