Multiple sequence alignment - TraesCS1B01G184500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G184500 chr1B 100.000 5289 0 0 1 5289 331147906 331142618 0.000000e+00 9768.0
1 TraesCS1B01G184500 chr1B 76.773 719 119 35 1243 1943 573215957 573216645 5.040000e-95 359.0
2 TraesCS1B01G184500 chr1B 72.727 605 142 20 60 650 633924346 633924941 1.170000e-41 182.0
3 TraesCS1B01G184500 chr1D 91.575 2920 134 39 821 3690 246936717 246939574 0.000000e+00 3927.0
4 TraesCS1B01G184500 chr1D 90.351 912 65 13 3799 4702 246939677 246940573 0.000000e+00 1175.0
5 TraesCS1B01G184500 chr1D 86.061 825 89 17 3 825 246865805 246866605 0.000000e+00 863.0
6 TraesCS1B01G184500 chr1D 73.096 591 110 34 58 635 363100793 363100239 1.180000e-36 165.0
7 TraesCS1B01G184500 chr1D 76.947 321 45 17 1242 1555 423764013 423764311 7.090000e-34 156.0
8 TraesCS1B01G184500 chr1D 82.734 139 16 7 5154 5289 246940572 246940705 3.350000e-22 117.0
9 TraesCS1B01G184500 chr1D 100.000 37 0 0 3768 3804 104545160 104545196 9.500000e-08 69.4
10 TraesCS1B01G184500 chr1A 91.369 2746 155 51 1981 4707 300859071 300856389 0.000000e+00 3683.0
11 TraesCS1B01G184500 chr1A 89.660 2002 158 24 3 1987 300861064 300859095 0.000000e+00 2505.0
12 TraesCS1B01G184500 chr1A 91.732 254 21 0 4900 5153 334072823 334073076 2.340000e-93 353.0
13 TraesCS1B01G184500 chr1A 79.142 513 79 21 1440 1943 520122993 520123486 3.950000e-86 329.0
14 TraesCS1B01G184500 chr1A 85.124 121 11 2 1243 1357 520122816 520122935 3.350000e-22 117.0
15 TraesCS1B01G184500 chr7B 93.254 252 17 0 4902 5153 743074010 743073759 6.470000e-99 372.0
16 TraesCS1B01G184500 chrUn 92.520 254 19 0 4900 5153 258927619 258927366 1.080000e-96 364.0
17 TraesCS1B01G184500 chr7D 92.520 254 19 0 4900 5153 382006451 382006704 1.080000e-96 364.0
18 TraesCS1B01G184500 chr7D 91.732 254 21 0 4900 5153 382003635 382003888 2.340000e-93 353.0
19 TraesCS1B01G184500 chr6A 92.520 254 19 0 4900 5153 289146381 289146128 1.080000e-96 364.0
20 TraesCS1B01G184500 chr6A 74.707 597 136 15 58 646 592355938 592356527 8.790000e-63 252.0
21 TraesCS1B01G184500 chr6A 86.726 113 15 0 1443 1555 39180723 39180611 5.560000e-25 126.0
22 TraesCS1B01G184500 chr5A 92.520 254 19 0 4900 5153 16615098 16615351 1.080000e-96 364.0
23 TraesCS1B01G184500 chr5A 100.000 40 0 0 3765 3804 510559781 510559742 2.040000e-09 75.0
24 TraesCS1B01G184500 chr5A 93.333 45 2 1 3760 3804 448631279 448631236 1.230000e-06 65.8
25 TraesCS1B01G184500 chr5A 86.885 61 2 5 3744 3802 626817976 626818032 4.420000e-06 63.9
26 TraesCS1B01G184500 chr4D 91.732 254 21 0 4900 5153 123375505 123375252 2.340000e-93 353.0
27 TraesCS1B01G184500 chr4D 76.712 584 115 18 77 649 354115466 354114893 6.650000e-79 305.0
28 TraesCS1B01G184500 chr2D 91.732 254 21 0 4900 5153 635044966 635044713 2.340000e-93 353.0
29 TraesCS1B01G184500 chr6D 74.461 603 119 29 57 649 445756547 445755970 1.480000e-55 228.0
30 TraesCS1B01G184500 chr6D 77.982 327 52 12 1246 1555 34999787 34999464 2.510000e-43 187.0
31 TraesCS1B01G184500 chr6D 100.000 38 0 0 3765 3802 439490792 439490755 2.640000e-08 71.3
32 TraesCS1B01G184500 chr4A 73.935 587 125 23 37 602 34746606 34746027 1.490000e-50 211.0
33 TraesCS1B01G184500 chr4A 77.291 251 43 12 67 309 512186614 512186370 9.240000e-28 135.0
34 TraesCS1B01G184500 chr4A 100.000 38 0 0 3767 3804 45946808 45946845 2.640000e-08 71.3
35 TraesCS1B01G184500 chr4A 88.525 61 1 5 3744 3802 22431094 22431150 9.500000e-08 69.4
36 TraesCS1B01G184500 chr5B 74.533 428 101 6 160 581 139352338 139351913 4.210000e-41 180.0
37 TraesCS1B01G184500 chr5B 76.736 288 56 9 283 567 123024548 123024269 3.300000e-32 150.0
38 TraesCS1B01G184500 chr6B 77.341 331 51 17 1246 1555 72379515 72379188 1.960000e-39 174.0
39 TraesCS1B01G184500 chr6B 95.556 45 2 0 3760 3804 132046231 132046187 7.350000e-09 73.1
40 TraesCS1B01G184500 chr4B 72.542 539 120 23 111 635 571904033 571904557 3.300000e-32 150.0
41 TraesCS1B01G184500 chr4B 87.692 65 8 0 5221 5285 531070720 531070656 5.680000e-10 76.8
42 TraesCS1B01G184500 chr4B 87.692 65 8 0 5221 5285 531071171 531071107 5.680000e-10 76.8
43 TraesCS1B01G184500 chr7A 82.558 86 14 1 550 635 92462418 92462334 2.040000e-09 75.0
44 TraesCS1B01G184500 chr3A 100.000 39 0 0 3766 3804 550547497 550547459 7.350000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G184500 chr1B 331142618 331147906 5288 True 9768.000000 9768 100.0000 1 5289 1 chr1B.!!$R1 5288
1 TraesCS1B01G184500 chr1B 573215957 573216645 688 False 359.000000 359 76.7730 1243 1943 1 chr1B.!!$F1 700
2 TraesCS1B01G184500 chr1D 246936717 246940705 3988 False 1739.666667 3927 88.2200 821 5289 3 chr1D.!!$F4 4468
3 TraesCS1B01G184500 chr1D 246865805 246866605 800 False 863.000000 863 86.0610 3 825 1 chr1D.!!$F2 822
4 TraesCS1B01G184500 chr1A 300856389 300861064 4675 True 3094.000000 3683 90.5145 3 4707 2 chr1A.!!$R1 4704
5 TraesCS1B01G184500 chr1A 520122816 520123486 670 False 223.000000 329 82.1330 1243 1943 2 chr1A.!!$F2 700
6 TraesCS1B01G184500 chr7D 382003635 382006704 3069 False 358.500000 364 92.1260 4900 5153 2 chr7D.!!$F1 253
7 TraesCS1B01G184500 chr6A 592355938 592356527 589 False 252.000000 252 74.7070 58 646 1 chr6A.!!$F1 588
8 TraesCS1B01G184500 chr4D 354114893 354115466 573 True 305.000000 305 76.7120 77 649 1 chr4D.!!$R2 572
9 TraesCS1B01G184500 chr6D 445755970 445756547 577 True 228.000000 228 74.4610 57 649 1 chr6D.!!$R3 592
10 TraesCS1B01G184500 chr4A 34746027 34746606 579 True 211.000000 211 73.9350 37 602 1 chr4A.!!$R1 565


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
313 330 0.809385 GTCTTCGGTGGATCTCACGA 59.191 55.0 7.85 5.46 46.96 4.35 F
1057 1084 0.108615 GCTTTCGCTACTCCTCTGCA 60.109 55.0 0.00 0.00 0.00 4.41 F
1160 1187 0.529378 CGACCAAGTAACGGCCTACT 59.471 55.0 0.00 0.00 33.41 2.57 F
3003 3104 0.319728 TGAGGTGACTGCTTCTCTGC 59.680 55.0 0.00 0.00 44.43 4.26 F
3004 3105 0.319728 GAGGTGACTGCTTCTCTGCA 59.680 55.0 0.00 0.00 44.43 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1623 1677 0.387112 CGCACGTACTCGGTTGGTAA 60.387 55.0 0.00 0.00 41.85 2.85 R
2934 3035 0.109735 CGTAAGACAGCAGCTCGTCA 60.110 55.0 20.41 5.00 43.02 4.35 R
3132 3235 0.312102 GCCAAACAACCAGTGAGCTC 59.688 55.0 6.82 6.82 0.00 4.09 R
3953 4111 0.032515 TCTTCAGCCCGTCCCATCTA 60.033 55.0 0.00 0.00 0.00 1.98 R
4841 5003 0.038618 GCCCAACTTTTCCGCGATTT 60.039 50.0 8.23 0.00 0.00 2.17 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.889995 CCAATTAGGATTTCCCACCTCTTC 59.110 45.833 0.00 0.00 41.22 2.87
117 119 1.372582 CATGAAGGTGTGGTGGATCG 58.627 55.000 0.00 0.00 0.00 3.69
205 216 3.217242 GCTCAGGAAAGCAAGACGA 57.783 52.632 0.00 0.00 42.05 4.20
229 240 2.733227 GCGGCTCACTGAAAATGGAATG 60.733 50.000 0.00 0.00 0.00 2.67
313 330 0.809385 GTCTTCGGTGGATCTCACGA 59.191 55.000 7.85 5.46 46.96 4.35
314 331 1.201647 GTCTTCGGTGGATCTCACGAA 59.798 52.381 14.60 14.60 46.96 3.85
320 337 4.178540 TCGGTGGATCTCACGAAAATTAC 58.821 43.478 7.85 0.00 46.96 1.89
479 498 2.060326 TAGCACGACAACTTTCCGAG 57.940 50.000 0.00 0.00 0.00 4.63
587 607 3.165875 CATCGGTAGGTGGTCTATGGAT 58.834 50.000 0.00 0.00 0.00 3.41
664 684 4.517075 TGAATTGACAAACGTGCTGGAATA 59.483 37.500 0.00 0.00 0.00 1.75
665 685 5.182950 TGAATTGACAAACGTGCTGGAATAT 59.817 36.000 0.00 0.00 0.00 1.28
858 879 9.948964 AGATCAATGATTCGTTGATATTCCATA 57.051 29.630 26.44 4.27 46.18 2.74
864 885 8.141835 TGATTCGTTGATATTCCATACAACAG 57.858 34.615 0.00 0.00 41.44 3.16
881 908 1.829222 ACAGTGGGTTGTCTATACGGG 59.171 52.381 0.00 0.00 0.00 5.28
927 954 3.849951 CGGGATGGGACGGTGAGG 61.850 72.222 0.00 0.00 0.00 3.86
1042 1069 0.110104 ACCTCTGCTTGCTCTGCTTT 59.890 50.000 0.00 0.00 0.00 3.51
1044 1071 0.443088 CTCTGCTTGCTCTGCTTTCG 59.557 55.000 0.00 0.00 0.00 3.46
1047 1074 0.320683 TGCTTGCTCTGCTTTCGCTA 60.321 50.000 0.00 0.00 36.97 4.26
1057 1084 0.108615 GCTTTCGCTACTCCTCTGCA 60.109 55.000 0.00 0.00 0.00 4.41
1154 1181 1.706443 GAAGTCCGACCAAGTAACGG 58.294 55.000 0.00 0.00 46.71 4.44
1157 1184 1.909781 TCCGACCAAGTAACGGCCT 60.910 57.895 0.00 0.00 45.25 5.19
1158 1185 0.611618 TCCGACCAAGTAACGGCCTA 60.612 55.000 0.00 0.00 45.25 3.93
1160 1187 0.529378 CGACCAAGTAACGGCCTACT 59.471 55.000 0.00 0.00 33.41 2.57
1210 1250 6.886459 TCGATCCCAATTTTCTCTCATCTTTT 59.114 34.615 0.00 0.00 0.00 2.27
1369 1418 1.127343 GTCCATCTTCCTCCCCTCTG 58.873 60.000 0.00 0.00 0.00 3.35
1425 1474 5.195001 AGAGCTAATCATCTCGGTCTTTC 57.805 43.478 0.00 0.00 34.66 2.62
1426 1475 4.646945 AGAGCTAATCATCTCGGTCTTTCA 59.353 41.667 0.00 0.00 34.66 2.69
1427 1476 5.304101 AGAGCTAATCATCTCGGTCTTTCAT 59.696 40.000 0.00 0.00 34.66 2.57
1428 1477 5.537188 AGCTAATCATCTCGGTCTTTCATC 58.463 41.667 0.00 0.00 0.00 2.92
1429 1478 5.304101 AGCTAATCATCTCGGTCTTTCATCT 59.696 40.000 0.00 0.00 0.00 2.90
1430 1479 5.988561 GCTAATCATCTCGGTCTTTCATCTT 59.011 40.000 0.00 0.00 0.00 2.40
1431 1480 7.014711 AGCTAATCATCTCGGTCTTTCATCTTA 59.985 37.037 0.00 0.00 0.00 2.10
1432 1481 7.816995 GCTAATCATCTCGGTCTTTCATCTTAT 59.183 37.037 0.00 0.00 0.00 1.73
1433 1482 9.703892 CTAATCATCTCGGTCTTTCATCTTATT 57.296 33.333 0.00 0.00 0.00 1.40
1437 1486 9.481340 TCATCTCGGTCTTTCATCTTATTATTG 57.519 33.333 0.00 0.00 0.00 1.90
1571 1620 1.875488 GGTATCCCTACCACACACCT 58.125 55.000 0.00 0.00 45.88 4.00
1572 1621 2.193993 GGTATCCCTACCACACACCTT 58.806 52.381 0.00 0.00 45.88 3.50
1838 1897 2.357760 GGAAAGTACGCGGCCACA 60.358 61.111 12.47 0.00 0.00 4.17
1978 2037 2.804167 CTGGAGAGCGCACGATCT 59.196 61.111 11.00 11.00 44.17 2.75
1991 2080 2.352814 GCACGATCTAGTGTGTGGAACT 60.353 50.000 11.96 0.00 43.61 3.01
1997 2086 4.271696 TCTAGTGTGTGGAACTGATTGG 57.728 45.455 0.00 0.00 38.04 3.16
2000 2089 1.608590 GTGTGTGGAACTGATTGGTGG 59.391 52.381 0.00 0.00 38.04 4.61
2008 2097 5.925969 GTGGAACTGATTGGTGGTTTAATTG 59.074 40.000 0.00 0.00 0.00 2.32
2058 2151 1.219393 CCTGGAGGTTTCGAGGCTC 59.781 63.158 3.87 3.87 41.58 4.70
2124 2217 5.238583 CACCGTCCTCTTAAATTTCTCAGT 58.761 41.667 0.00 0.00 0.00 3.41
2126 2219 5.701290 ACCGTCCTCTTAAATTTCTCAGTTG 59.299 40.000 0.00 0.00 0.00 3.16
2247 2345 2.357034 GCGACGGTGAAGGAGCAA 60.357 61.111 0.00 0.00 0.00 3.91
2593 2693 1.077787 GGCATCATGAACGGGGTCA 60.078 57.895 0.00 0.00 0.00 4.02
2625 2725 2.948315 GCTCAAGATCATCCCCAAAGAC 59.052 50.000 0.00 0.00 0.00 3.01
2650 2750 2.202878 GAGCCTGCGTCGCCATTA 60.203 61.111 15.88 0.00 0.00 1.90
2746 2847 4.008933 AGGTGGCACGAGCTGTCC 62.009 66.667 12.17 5.23 41.70 4.02
2749 2850 3.381983 TGGCACGAGCTGTCCGAT 61.382 61.111 4.48 0.00 41.70 4.18
2849 2950 5.443283 TGAAAGGATGGATGGATCTTCAAG 58.557 41.667 0.00 0.00 0.00 3.02
2864 2965 8.154203 TGGATCTTCAAGATGTTAAACTGTACA 58.846 33.333 4.06 0.00 34.53 2.90
2865 2966 9.167311 GGATCTTCAAGATGTTAAACTGTACAT 57.833 33.333 4.06 0.00 34.53 2.29
2886 2987 0.726827 TCGATGCAAACGATGGCTTC 59.273 50.000 13.76 0.00 35.75 3.86
2891 2992 1.244019 GCAAACGATGGCTTCTGGGT 61.244 55.000 0.00 0.00 0.00 4.51
2934 3035 3.726557 TTCTGCTTGATCATCCAGGTT 57.273 42.857 17.91 0.00 0.00 3.50
3000 3101 0.972883 AGGTGAGGTGACTGCTTCTC 59.027 55.000 0.00 0.00 44.43 2.87
3001 3102 0.972883 GGTGAGGTGACTGCTTCTCT 59.027 55.000 0.00 0.00 44.43 3.10
3002 3103 1.337635 GGTGAGGTGACTGCTTCTCTG 60.338 57.143 0.00 0.00 44.43 3.35
3003 3104 0.319728 TGAGGTGACTGCTTCTCTGC 59.680 55.000 0.00 0.00 44.43 4.26
3004 3105 0.319728 GAGGTGACTGCTTCTCTGCA 59.680 55.000 0.00 0.00 44.43 4.41
3005 3106 0.761187 AGGTGACTGCTTCTCTGCAA 59.239 50.000 0.00 0.00 42.83 4.08
3006 3107 1.350351 AGGTGACTGCTTCTCTGCAAT 59.650 47.619 0.00 0.00 42.83 3.56
3062 3163 6.560253 ATCTGCATCGTTGTTTTTACTCTT 57.440 33.333 0.00 0.00 0.00 2.85
3072 3173 6.560711 GTTGTTTTTACTCTTTTCCAGCTCA 58.439 36.000 0.00 0.00 0.00 4.26
3137 3240 7.082602 CACATTTAGAATGCCATAATGAGCTC 58.917 38.462 6.82 6.82 32.15 4.09
3185 3288 3.067106 GACTAATGGGCGTATCCACATG 58.933 50.000 0.00 0.00 39.97 3.21
3216 3319 5.770663 TGCTTACTAGAATAGCCCTACTCTG 59.229 44.000 0.00 0.00 44.39 3.35
3217 3320 6.005198 GCTTACTAGAATAGCCCTACTCTGA 58.995 44.000 0.00 0.00 44.39 3.27
3218 3321 6.490721 GCTTACTAGAATAGCCCTACTCTGAA 59.509 42.308 0.00 0.00 44.39 3.02
3219 3322 7.014422 GCTTACTAGAATAGCCCTACTCTGAAA 59.986 40.741 0.00 0.00 44.39 2.69
3220 3323 6.718522 ACTAGAATAGCCCTACTCTGAAAC 57.281 41.667 0.00 0.00 44.39 2.78
3221 3324 6.195700 ACTAGAATAGCCCTACTCTGAAACA 58.804 40.000 0.00 0.00 44.39 2.83
3224 3327 5.426833 AGAATAGCCCTACTCTGAAACACAT 59.573 40.000 0.00 0.00 0.00 3.21
3225 3328 3.618690 AGCCCTACTCTGAAACACATC 57.381 47.619 0.00 0.00 0.00 3.06
3274 3396 2.194271 CAACCGCGATTAGGAGAGAAC 58.806 52.381 8.23 0.00 0.00 3.01
3369 3491 6.463995 TTTTTAAGCTGAATGACAACCACT 57.536 33.333 0.00 0.00 0.00 4.00
3448 3572 6.809897 GCGCAAGTGACAACTCTGTCTTTC 62.810 50.000 0.30 0.00 45.20 2.62
3541 3665 3.367932 CGTCTCACATGTACATGGTCAAC 59.632 47.826 33.32 24.21 42.91 3.18
3542 3666 4.314961 GTCTCACATGTACATGGTCAACA 58.685 43.478 33.32 13.72 42.91 3.33
3543 3667 4.754618 GTCTCACATGTACATGGTCAACAA 59.245 41.667 33.32 13.57 42.91 2.83
3558 3682 3.063997 GTCAACAACACAGTGGAGTGAAG 59.936 47.826 5.31 0.00 42.05 3.02
3569 3693 0.877743 GGAGTGAAGCAAGCCACTTC 59.122 55.000 5.63 4.46 43.02 3.01
3604 3728 3.287312 TGTTGCTTAAACTGCAGATGC 57.713 42.857 23.35 15.94 41.71 3.91
3685 3809 8.594550 ACATATAATTTACTTAGGGCATCGTCT 58.405 33.333 0.00 0.00 0.00 4.18
3753 3911 9.561270 GACTGAGCTTAGTGGAATTTTATTTTC 57.439 33.333 16.95 0.00 0.00 2.29
3775 3933 9.498176 TTTTCTTTACTTGTATTGTACTCCCTC 57.502 33.333 0.00 0.00 0.00 4.30
3776 3934 7.179076 TCTTTACTTGTATTGTACTCCCTCC 57.821 40.000 0.00 0.00 0.00 4.30
3777 3935 6.727231 TCTTTACTTGTATTGTACTCCCTCCA 59.273 38.462 0.00 0.00 0.00 3.86
3778 3936 7.402071 TCTTTACTTGTATTGTACTCCCTCCAT 59.598 37.037 0.00 0.00 0.00 3.41
3779 3937 7.504926 TTACTTGTATTGTACTCCCTCCATT 57.495 36.000 0.00 0.00 0.00 3.16
3780 3938 5.990668 ACTTGTATTGTACTCCCTCCATTC 58.009 41.667 0.00 0.00 0.00 2.67
3781 3939 5.726793 ACTTGTATTGTACTCCCTCCATTCT 59.273 40.000 0.00 0.00 0.00 2.40
3782 3940 6.901300 ACTTGTATTGTACTCCCTCCATTCTA 59.099 38.462 0.00 0.00 0.00 2.10
3783 3941 7.402071 ACTTGTATTGTACTCCCTCCATTCTAA 59.598 37.037 0.00 0.00 0.00 2.10
3784 3942 7.743116 TGTATTGTACTCCCTCCATTCTAAA 57.257 36.000 0.00 0.00 0.00 1.85
3785 3943 8.153221 TGTATTGTACTCCCTCCATTCTAAAA 57.847 34.615 0.00 0.00 0.00 1.52
3786 3944 8.778059 TGTATTGTACTCCCTCCATTCTAAAAT 58.222 33.333 0.00 0.00 0.00 1.82
3789 3947 8.618240 TTGTACTCCCTCCATTCTAAAATAGA 57.382 34.615 0.00 0.00 0.00 1.98
3790 3948 8.798975 TGTACTCCCTCCATTCTAAAATAGAT 57.201 34.615 0.00 0.00 34.22 1.98
3791 3949 8.651389 TGTACTCCCTCCATTCTAAAATAGATG 58.349 37.037 0.00 0.00 34.22 2.90
3792 3950 7.937700 ACTCCCTCCATTCTAAAATAGATGA 57.062 36.000 0.00 0.00 34.22 2.92
3793 3951 7.740805 ACTCCCTCCATTCTAAAATAGATGAC 58.259 38.462 0.00 0.00 34.22 3.06
3794 3952 7.079451 TCCCTCCATTCTAAAATAGATGACC 57.921 40.000 0.00 0.00 34.22 4.02
3795 3953 6.044404 TCCCTCCATTCTAAAATAGATGACCC 59.956 42.308 0.00 0.00 34.22 4.46
3796 3954 6.183361 CCCTCCATTCTAAAATAGATGACCCA 60.183 42.308 0.00 0.00 34.22 4.51
3797 3955 7.290061 CCTCCATTCTAAAATAGATGACCCAA 58.710 38.462 0.00 0.00 34.22 4.12
3810 3968 5.189180 AGATGACCCAACTTTATGAAGCTC 58.811 41.667 0.00 0.00 36.29 4.09
3813 3971 3.335579 ACCCAACTTTATGAAGCTCGAC 58.664 45.455 0.00 0.00 36.29 4.20
3886 4044 0.402121 AAGCCTTTCTCCCTGACCAC 59.598 55.000 0.00 0.00 0.00 4.16
3893 4051 2.704190 TCTCCCTGACCACTTTCTCT 57.296 50.000 0.00 0.00 0.00 3.10
3917 4075 9.684448 TCTAGATTCTTGCAATATTTAGACTCG 57.316 33.333 0.00 0.00 0.00 4.18
3918 4076 7.721286 AGATTCTTGCAATATTTAGACTCGG 57.279 36.000 0.00 0.00 0.00 4.63
3943 4101 7.707104 GCTTGTGCCTCTAAATTATACAATGT 58.293 34.615 0.00 0.00 0.00 2.71
3944 4102 7.857885 GCTTGTGCCTCTAAATTATACAATGTC 59.142 37.037 0.00 0.00 0.00 3.06
3962 4120 6.884836 ACAATGTCCTACTTTTTAGATGGGAC 59.115 38.462 0.00 0.00 41.22 4.46
3990 4148 3.909086 AACTTCCTGAGCCTGCCGC 62.909 63.158 0.00 0.00 37.98 6.53
4104 4262 1.279527 CTTCGTAAGTCGCGGCACAA 61.280 55.000 15.58 0.00 39.67 3.33
4110 4268 2.116736 AAGTCGCGGCACAACACATG 62.117 55.000 15.58 0.00 0.00 3.21
4111 4269 4.024143 TCGCGGCACAACACATGC 62.024 61.111 6.13 0.00 42.62 4.06
4116 4274 4.950744 GCACAACACATGCCACTC 57.049 55.556 0.00 0.00 37.08 3.51
4118 4276 1.081906 CACAACACATGCCACTCGC 60.082 57.895 0.00 0.00 38.31 5.03
4119 4277 2.260869 ACAACACATGCCACTCGCC 61.261 57.895 0.00 0.00 36.24 5.54
4120 4278 3.049674 AACACATGCCACTCGCCG 61.050 61.111 0.00 0.00 36.24 6.46
4174 4332 1.202639 TCGTGTGATCTGTGGTGCTTT 60.203 47.619 0.00 0.00 0.00 3.51
4184 4342 2.914097 GGTGCTTTGCAGGTGCCT 60.914 61.111 0.00 0.00 40.08 4.75
4232 4390 0.463654 TGATCGCTGGCATAACCCAC 60.464 55.000 0.00 0.00 37.83 4.61
4242 4400 0.179073 CATAACCCACTCTCCAGCCG 60.179 60.000 0.00 0.00 0.00 5.52
4249 4407 2.443016 CTCTCCAGCCGGCTAGGT 60.443 66.667 32.30 3.65 43.70 3.08
4250 4408 2.759973 TCTCCAGCCGGCTAGGTG 60.760 66.667 32.30 28.97 43.70 4.00
4251 4409 2.759973 CTCCAGCCGGCTAGGTGA 60.760 66.667 32.30 21.16 43.70 4.02
4267 4428 2.325364 TGAGGAGGAGGACCCGGAT 61.325 63.158 0.73 0.00 40.87 4.18
4421 4583 8.610035 GTCCGTTTTATTCTCCGAATAAAGATT 58.390 33.333 16.61 0.00 34.67 2.40
4445 4607 4.511826 ACACCTTTTAGAGCTTCTTTCACG 59.488 41.667 0.00 0.00 0.00 4.35
4454 4616 5.850614 AGAGCTTCTTTCACGGTTTTAGTA 58.149 37.500 0.00 0.00 0.00 1.82
4525 4687 2.080286 AACATCTCACACAGCGGTAC 57.920 50.000 0.00 0.00 0.00 3.34
4533 4695 1.206578 CACAGCGGTACAAAAGGCG 59.793 57.895 0.00 0.00 0.00 5.52
4545 4707 6.317088 GGTACAAAAGGCGAAAAGGTATAAC 58.683 40.000 0.00 0.00 0.00 1.89
4614 4776 5.294060 CACCAAAAAGCTGTTGCAGTAAAAT 59.706 36.000 5.11 0.00 42.74 1.82
4617 4779 7.550906 ACCAAAAAGCTGTTGCAGTAAAATTTA 59.449 29.630 5.11 0.00 42.74 1.40
4649 4811 4.718940 AAGGTGAATTTTAGGGCATTCG 57.281 40.909 0.00 0.00 32.83 3.34
4653 4815 5.245075 AGGTGAATTTTAGGGCATTCGAAAA 59.755 36.000 0.00 0.00 32.83 2.29
4676 4838 1.067295 TCATCTCCAACAACTGCCCT 58.933 50.000 0.00 0.00 0.00 5.19
4733 4895 3.690460 ACAAATGGTAGAGGCCTTCTTG 58.310 45.455 6.77 5.82 37.36 3.02
4734 4896 3.019564 CAAATGGTAGAGGCCTTCTTGG 58.980 50.000 6.77 0.00 37.36 3.61
4735 4897 1.216990 ATGGTAGAGGCCTTCTTGGG 58.783 55.000 6.77 0.00 37.36 4.12
4736 4898 0.914417 TGGTAGAGGCCTTCTTGGGG 60.914 60.000 6.77 0.00 37.36 4.96
4737 4899 1.636769 GGTAGAGGCCTTCTTGGGGG 61.637 65.000 6.77 0.00 37.36 5.40
4738 4900 0.620700 GTAGAGGCCTTCTTGGGGGA 60.621 60.000 6.77 0.00 37.36 4.81
4739 4901 0.326618 TAGAGGCCTTCTTGGGGGAG 60.327 60.000 6.77 0.00 37.36 4.30
4740 4902 3.342477 AGGCCTTCTTGGGGGAGC 61.342 66.667 0.00 0.00 36.00 4.70
4741 4903 4.803908 GGCCTTCTTGGGGGAGCG 62.804 72.222 0.00 0.00 36.00 5.03
4742 4904 4.035102 GCCTTCTTGGGGGAGCGT 62.035 66.667 0.00 0.00 36.00 5.07
4743 4905 2.757077 CCTTCTTGGGGGAGCGTT 59.243 61.111 0.00 0.00 0.00 4.84
4744 4906 1.675641 CCTTCTTGGGGGAGCGTTG 60.676 63.158 0.00 0.00 0.00 4.10
4745 4907 1.073199 CTTCTTGGGGGAGCGTTGT 59.927 57.895 0.00 0.00 0.00 3.32
4746 4908 1.228124 TTCTTGGGGGAGCGTTGTG 60.228 57.895 0.00 0.00 0.00 3.33
4747 4909 3.365265 CTTGGGGGAGCGTTGTGC 61.365 66.667 0.00 0.00 46.98 4.57
4757 4919 3.636231 CGTTGTGCTCCCCTGGGA 61.636 66.667 16.20 6.36 42.90 4.37
4765 4927 3.607299 TCCCCTGGGAGGAACGGA 61.607 66.667 16.20 0.00 39.76 4.69
4766 4928 3.083997 CCCCTGGGAGGAACGGAG 61.084 72.222 16.20 0.00 37.67 4.63
4767 4929 3.787001 CCCTGGGAGGAACGGAGC 61.787 72.222 7.01 0.00 37.67 4.70
4768 4930 3.787001 CCTGGGAGGAACGGAGCC 61.787 72.222 0.00 0.00 37.67 4.70
4769 4931 4.148825 CTGGGAGGAACGGAGCCG 62.149 72.222 7.48 7.48 46.03 5.52
4772 4934 3.387947 GGAGGAACGGAGCCGGAA 61.388 66.667 5.05 0.00 44.69 4.30
4773 4935 2.660802 GAGGAACGGAGCCGGAAA 59.339 61.111 5.05 0.00 44.69 3.13
4774 4936 1.004200 GAGGAACGGAGCCGGAAAA 60.004 57.895 5.05 0.00 44.69 2.29
4775 4937 0.392595 GAGGAACGGAGCCGGAAAAT 60.393 55.000 5.05 0.00 44.69 1.82
4776 4938 0.676782 AGGAACGGAGCCGGAAAATG 60.677 55.000 5.05 0.00 44.69 2.32
4777 4939 0.675522 GGAACGGAGCCGGAAAATGA 60.676 55.000 5.05 0.00 44.69 2.57
4778 4940 1.161843 GAACGGAGCCGGAAAATGAA 58.838 50.000 5.05 0.00 44.69 2.57
4779 4941 1.538075 GAACGGAGCCGGAAAATGAAA 59.462 47.619 5.05 0.00 44.69 2.69
4780 4942 1.165270 ACGGAGCCGGAAAATGAAAG 58.835 50.000 5.05 0.00 44.69 2.62
4781 4943 1.165270 CGGAGCCGGAAAATGAAAGT 58.835 50.000 5.05 0.00 35.56 2.66
4782 4944 1.130561 CGGAGCCGGAAAATGAAAGTC 59.869 52.381 5.05 0.00 35.56 3.01
4783 4945 1.472878 GGAGCCGGAAAATGAAAGTCC 59.527 52.381 5.05 0.00 0.00 3.85
4784 4946 2.437413 GAGCCGGAAAATGAAAGTCCT 58.563 47.619 5.05 0.00 0.00 3.85
4785 4947 2.820197 GAGCCGGAAAATGAAAGTCCTT 59.180 45.455 5.05 0.00 0.00 3.36
4786 4948 2.820197 AGCCGGAAAATGAAAGTCCTTC 59.180 45.455 5.05 0.00 34.31 3.46
4787 4949 2.414161 GCCGGAAAATGAAAGTCCTTCG 60.414 50.000 5.05 0.00 36.78 3.79
4788 4950 2.414161 CCGGAAAATGAAAGTCCTTCGC 60.414 50.000 0.00 0.00 36.78 4.70
4789 4951 2.724839 CGGAAAATGAAAGTCCTTCGCG 60.725 50.000 0.00 0.00 36.78 5.87
4790 4952 2.225727 GGAAAATGAAAGTCCTTCGCGT 59.774 45.455 5.77 0.00 36.78 6.01
4791 4953 3.304458 GGAAAATGAAAGTCCTTCGCGTT 60.304 43.478 5.77 0.00 36.78 4.84
4792 4954 3.537793 AAATGAAAGTCCTTCGCGTTC 57.462 42.857 5.77 0.59 36.78 3.95
4793 4955 1.068474 ATGAAAGTCCTTCGCGTTCG 58.932 50.000 5.77 0.00 36.78 3.95
4794 4956 0.942410 TGAAAGTCCTTCGCGTTCGG 60.942 55.000 5.77 5.31 36.78 4.30
4795 4957 0.665369 GAAAGTCCTTCGCGTTCGGA 60.665 55.000 5.77 7.88 36.13 4.55
4796 4958 0.666577 AAAGTCCTTCGCGTTCGGAG 60.667 55.000 5.77 0.00 40.99 4.63
4800 4962 2.875485 CTTCGCGTTCGGAGGAGA 59.125 61.111 5.77 0.00 37.67 3.71
4801 4963 1.226435 CTTCGCGTTCGGAGGAGAG 60.226 63.158 5.77 0.00 37.67 3.20
4802 4964 1.645704 CTTCGCGTTCGGAGGAGAGA 61.646 60.000 5.77 0.00 37.67 3.10
4803 4965 1.239296 TTCGCGTTCGGAGGAGAGAA 61.239 55.000 5.77 0.00 36.13 2.87
4804 4966 1.514443 CGCGTTCGGAGGAGAGAAC 60.514 63.158 0.00 0.00 42.23 3.01
4805 4967 1.153804 GCGTTCGGAGGAGAGAACC 60.154 63.158 3.20 0.00 42.57 3.62
4806 4968 1.596895 GCGTTCGGAGGAGAGAACCT 61.597 60.000 3.20 0.00 42.57 3.50
4814 4976 4.921834 GAGAGAACCTCCAAGGCG 57.078 61.111 0.00 0.00 39.63 5.52
4815 4977 1.976112 GAGAGAACCTCCAAGGCGT 59.024 57.895 0.00 0.00 39.63 5.68
4816 4978 0.108567 GAGAGAACCTCCAAGGCGTC 60.109 60.000 0.00 0.00 39.63 5.19
4817 4979 0.832135 AGAGAACCTCCAAGGCGTCA 60.832 55.000 0.00 0.00 39.63 4.35
4818 4980 0.250513 GAGAACCTCCAAGGCGTCAT 59.749 55.000 0.00 0.00 39.63 3.06
4819 4981 1.480954 GAGAACCTCCAAGGCGTCATA 59.519 52.381 0.00 0.00 39.63 2.15
4820 4982 1.207329 AGAACCTCCAAGGCGTCATAC 59.793 52.381 0.00 0.00 39.63 2.39
4821 4983 0.108329 AACCTCCAAGGCGTCATACG 60.108 55.000 0.00 0.00 45.88 3.06
4822 4984 1.255667 ACCTCCAAGGCGTCATACGT 61.256 55.000 0.00 0.00 44.73 3.57
4823 4985 0.108329 CCTCCAAGGCGTCATACGTT 60.108 55.000 0.00 0.00 44.73 3.99
4824 4986 1.135527 CCTCCAAGGCGTCATACGTTA 59.864 52.381 0.00 0.00 44.73 3.18
4825 4987 2.460918 CTCCAAGGCGTCATACGTTAG 58.539 52.381 0.00 0.00 44.73 2.34
4826 4988 1.820519 TCCAAGGCGTCATACGTTAGT 59.179 47.619 0.00 0.00 44.73 2.24
4827 4989 2.159338 TCCAAGGCGTCATACGTTAGTC 60.159 50.000 0.00 0.00 44.73 2.59
4828 4990 2.159282 CCAAGGCGTCATACGTTAGTCT 60.159 50.000 0.00 0.00 44.73 3.24
4829 4991 3.065786 CCAAGGCGTCATACGTTAGTCTA 59.934 47.826 0.00 0.00 44.73 2.59
4830 4992 4.439153 CCAAGGCGTCATACGTTAGTCTAA 60.439 45.833 0.00 0.00 44.73 2.10
4831 4993 5.279384 CAAGGCGTCATACGTTAGTCTAAT 58.721 41.667 0.00 0.00 44.73 1.73
4832 4994 4.856664 AGGCGTCATACGTTAGTCTAATG 58.143 43.478 9.84 9.84 44.73 1.90
4833 4995 4.577693 AGGCGTCATACGTTAGTCTAATGA 59.422 41.667 17.07 4.49 44.73 2.57
4834 4996 5.066893 AGGCGTCATACGTTAGTCTAATGAA 59.933 40.000 17.07 0.00 44.73 2.57
4835 4997 5.745294 GGCGTCATACGTTAGTCTAATGAAA 59.255 40.000 17.07 6.49 44.73 2.69
4836 4998 6.420008 GGCGTCATACGTTAGTCTAATGAAAT 59.580 38.462 17.07 8.22 44.73 2.17
4837 4999 7.358187 GGCGTCATACGTTAGTCTAATGAAATC 60.358 40.741 17.07 4.56 44.73 2.17
4838 5000 7.166970 GCGTCATACGTTAGTCTAATGAAATCA 59.833 37.037 17.07 0.00 44.73 2.57
4839 5001 8.469902 CGTCATACGTTAGTCTAATGAAATCAC 58.530 37.037 17.07 7.16 36.74 3.06
4840 5002 9.297586 GTCATACGTTAGTCTAATGAAATCACA 57.702 33.333 17.07 0.00 0.00 3.58
4841 5003 9.863845 TCATACGTTAGTCTAATGAAATCACAA 57.136 29.630 17.07 0.00 0.00 3.33
4846 5008 9.199184 CGTTAGTCTAATGAAATCACAAAATCG 57.801 33.333 5.99 0.00 0.00 3.34
4847 5009 9.000018 GTTAGTCTAATGAAATCACAAAATCGC 58.000 33.333 0.00 0.00 0.00 4.58
4848 5010 6.250819 AGTCTAATGAAATCACAAAATCGCG 58.749 36.000 0.00 0.00 0.00 5.87
4849 5011 5.452302 GTCTAATGAAATCACAAAATCGCGG 59.548 40.000 6.13 0.00 0.00 6.46
4850 5012 4.433186 AATGAAATCACAAAATCGCGGA 57.567 36.364 6.13 0.00 0.00 5.54
4851 5013 3.906014 TGAAATCACAAAATCGCGGAA 57.094 38.095 6.13 0.00 0.00 4.30
4852 5014 4.230314 TGAAATCACAAAATCGCGGAAA 57.770 36.364 6.13 0.00 0.00 3.13
4853 5015 4.611943 TGAAATCACAAAATCGCGGAAAA 58.388 34.783 6.13 0.00 0.00 2.29
4854 5016 4.679197 TGAAATCACAAAATCGCGGAAAAG 59.321 37.500 6.13 0.00 0.00 2.27
4855 5017 3.915437 ATCACAAAATCGCGGAAAAGT 57.085 38.095 6.13 0.00 0.00 2.66
4856 5018 3.701532 TCACAAAATCGCGGAAAAGTT 57.298 38.095 6.13 0.00 0.00 2.66
4857 5019 3.367607 TCACAAAATCGCGGAAAAGTTG 58.632 40.909 6.13 5.36 0.00 3.16
4858 5020 2.470999 CACAAAATCGCGGAAAAGTTGG 59.529 45.455 6.13 0.00 0.00 3.77
4859 5021 2.058057 CAAAATCGCGGAAAAGTTGGG 58.942 47.619 6.13 0.00 0.00 4.12
4860 5022 0.038618 AAATCGCGGAAAAGTTGGGC 60.039 50.000 6.13 0.00 0.00 5.36
4861 5023 1.175983 AATCGCGGAAAAGTTGGGCA 61.176 50.000 6.13 0.00 0.00 5.36
4862 5024 1.586154 ATCGCGGAAAAGTTGGGCAG 61.586 55.000 6.13 0.00 0.00 4.85
4863 5025 2.650778 GCGGAAAAGTTGGGCAGG 59.349 61.111 0.00 0.00 0.00 4.85
4864 5026 2.931068 GCGGAAAAGTTGGGCAGGG 61.931 63.158 0.00 0.00 0.00 4.45
4865 5027 2.275380 CGGAAAAGTTGGGCAGGGG 61.275 63.158 0.00 0.00 0.00 4.79
4866 5028 1.913262 GGAAAAGTTGGGCAGGGGG 60.913 63.158 0.00 0.00 0.00 5.40
4867 5029 1.152333 GAAAAGTTGGGCAGGGGGT 60.152 57.895 0.00 0.00 0.00 4.95
4868 5030 1.152333 AAAAGTTGGGCAGGGGGTC 60.152 57.895 0.00 0.00 0.00 4.46
4869 5031 1.955458 AAAAGTTGGGCAGGGGGTCA 61.955 55.000 0.00 0.00 0.00 4.02
4870 5032 1.955458 AAAGTTGGGCAGGGGGTCAA 61.955 55.000 0.00 0.00 0.00 3.18
4871 5033 2.600470 GTTGGGCAGGGGGTCAAC 60.600 66.667 0.00 0.00 33.81 3.18
4872 5034 3.106609 TTGGGCAGGGGGTCAACA 61.107 61.111 0.00 0.00 0.00 3.33
4873 5035 3.444818 TTGGGCAGGGGGTCAACAC 62.445 63.158 0.00 0.00 0.00 3.32
4874 5036 4.678743 GGGCAGGGGGTCAACACC 62.679 72.222 0.00 0.00 42.90 4.16
4881 5043 4.717313 GGGTCAACACCGCCCCTC 62.717 72.222 0.00 0.00 44.91 4.30
4882 5044 4.717313 GGTCAACACCGCCCCTCC 62.717 72.222 0.00 0.00 31.06 4.30
4894 5056 2.925170 CCCTCCGGCTGGGGATAG 60.925 72.222 15.09 1.25 45.18 2.08
4895 5057 3.631046 CCTCCGGCTGGGGATAGC 61.631 72.222 15.09 0.00 38.40 2.97
4896 5058 2.525381 CTCCGGCTGGGGATAGCT 60.525 66.667 5.06 0.00 38.40 3.32
4897 5059 2.524394 TCCGGCTGGGGATAGCTC 60.524 66.667 12.87 0.00 43.22 4.09
4898 5060 3.996124 CCGGCTGGGGATAGCTCG 61.996 72.222 2.57 0.00 43.22 5.03
4906 5068 4.708968 GGATAGCTCGGCTCCGCG 62.709 72.222 0.00 0.00 40.44 6.46
4970 7948 2.988684 GCCCCGCATGGTTCACAA 60.989 61.111 0.00 0.00 0.00 3.33
4977 7955 1.334960 CGCATGGTTCACAAGGTTGTC 60.335 52.381 0.00 0.00 39.91 3.18
4995 7973 1.750399 CGGCCTACCAAGCAAGCAT 60.750 57.895 0.00 0.00 34.57 3.79
5043 8021 1.138266 GTGGGCTCCACGCTCTTTATA 59.862 52.381 8.37 0.00 44.95 0.98
5046 8024 2.546162 GGGCTCCACGCTCTTTATACTC 60.546 54.545 0.00 0.00 35.72 2.59
5048 8026 3.243907 GGCTCCACGCTCTTTATACTCAT 60.244 47.826 0.00 0.00 39.13 2.90
5060 8038 7.978975 GCTCTTTATACTCATTGTTCTCTCTGT 59.021 37.037 0.00 0.00 0.00 3.41
5096 8074 7.454694 TCCTATTGCTCTAACCATAAGCTATGA 59.545 37.037 0.00 0.00 38.45 2.15
5108 8086 5.533903 CCATAAGCTATGACAATTCCAGCTT 59.466 40.000 11.42 11.42 44.89 3.74
5128 8106 4.599500 ACCCACTCTGGCCCACCT 62.599 66.667 0.00 0.00 35.79 4.00
5131 8109 1.613630 CCACTCTGGCCCACCTAGT 60.614 63.158 0.00 0.00 36.63 2.57
5133 8111 0.904865 CACTCTGGCCCACCTAGTGA 60.905 60.000 0.00 0.00 45.84 3.41
5153 8131 2.640302 GCCCGAGTGAGCTCAGTGA 61.640 63.158 28.54 0.00 41.71 3.41
5154 8132 1.967535 CCCGAGTGAGCTCAGTGAA 59.032 57.895 28.54 0.00 41.71 3.18
5155 8133 0.318441 CCCGAGTGAGCTCAGTGAAA 59.682 55.000 28.54 0.00 41.71 2.69
5156 8134 1.066573 CCCGAGTGAGCTCAGTGAAAT 60.067 52.381 28.54 0.00 41.71 2.17
5157 8135 2.166459 CCCGAGTGAGCTCAGTGAAATA 59.834 50.000 28.54 0.00 41.71 1.40
5162 8140 6.456181 CCGAGTGAGCTCAGTGAAATAATTTC 60.456 42.308 28.54 8.90 41.71 2.17
5196 8174 9.681692 CATTCAAACATTGTAGAATTCACTTCA 57.318 29.630 8.44 0.00 36.24 3.02
5198 8176 9.515020 TTCAAACATTGTAGAATTCACTTCAAC 57.485 29.630 8.44 0.00 36.24 3.18
5234 8212 8.062065 TCAAAGTTTTGAACATCCAAACTACT 57.938 30.769 9.21 0.00 43.62 2.57
5235 8213 9.179909 TCAAAGTTTTGAACATCCAAACTACTA 57.820 29.630 9.21 0.00 43.62 1.82
5236 8214 9.450807 CAAAGTTTTGAACATCCAAACTACTAG 57.549 33.333 9.21 0.00 40.55 2.57
5237 8215 8.974060 AAGTTTTGAACATCCAAACTACTAGA 57.026 30.769 9.21 0.00 35.95 2.43
5238 8216 9.574516 AAGTTTTGAACATCCAAACTACTAGAT 57.425 29.630 9.21 0.00 35.95 1.98
5239 8217 9.220767 AGTTTTGAACATCCAAACTACTAGATC 57.779 33.333 7.54 0.00 35.95 2.75
5241 8219 8.547967 TTTGAACATCCAAACTACTAGATCAC 57.452 34.615 0.00 0.00 31.73 3.06
5242 8220 6.640518 TGAACATCCAAACTACTAGATCACC 58.359 40.000 0.00 0.00 0.00 4.02
5243 8221 5.615925 ACATCCAAACTACTAGATCACCC 57.384 43.478 0.00 0.00 0.00 4.61
5244 8222 5.281314 ACATCCAAACTACTAGATCACCCT 58.719 41.667 0.00 0.00 0.00 4.34
5246 8224 6.901300 ACATCCAAACTACTAGATCACCCTAA 59.099 38.462 0.00 0.00 0.00 2.69
5247 8225 7.402071 ACATCCAAACTACTAGATCACCCTAAA 59.598 37.037 0.00 0.00 0.00 1.85
5248 8226 7.179076 TCCAAACTACTAGATCACCCTAAAC 57.821 40.000 0.00 0.00 0.00 2.01
5250 8228 7.402071 TCCAAACTACTAGATCACCCTAAACAT 59.598 37.037 0.00 0.00 0.00 2.71
5251 8229 8.047310 CCAAACTACTAGATCACCCTAAACATT 58.953 37.037 0.00 0.00 0.00 2.71
5256 8234 6.885922 ACTAGATCACCCTAAACATTACCAC 58.114 40.000 0.00 0.00 0.00 4.16
5257 8235 4.766375 AGATCACCCTAAACATTACCACG 58.234 43.478 0.00 0.00 0.00 4.94
5258 8236 4.468510 AGATCACCCTAAACATTACCACGA 59.531 41.667 0.00 0.00 0.00 4.35
5260 8238 4.761975 TCACCCTAAACATTACCACGATC 58.238 43.478 0.00 0.00 0.00 3.69
5261 8239 3.554324 CACCCTAAACATTACCACGATCG 59.446 47.826 14.88 14.88 0.00 3.69
5267 8245 2.376109 ACATTACCACGATCGACTCCT 58.624 47.619 24.34 0.00 0.00 3.69
5282 8260 0.613853 CTCCTACGGACAACCTCCCA 60.614 60.000 0.00 0.00 35.21 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.667519 AGTACATGAGGTATTTCGGGAC 57.332 45.455 0.00 0.00 33.76 4.46
1 2 5.698104 TCTAGTACATGAGGTATTTCGGGA 58.302 41.667 0.00 0.00 33.76 5.14
9 10 5.198965 GGAACCACTCTAGTACATGAGGTA 58.801 45.833 16.10 0.00 34.84 3.08
40 41 1.614317 CGCCAAGAAGAGGTGGGAAAT 60.614 52.381 0.00 0.00 35.28 2.17
73 74 2.135664 AAACCACAGAAGACGAGACG 57.864 50.000 0.00 0.00 0.00 4.18
196 207 4.087892 AGCCGCCATCGTCTTGCT 62.088 61.111 0.00 0.00 0.00 3.91
205 216 0.813184 CATTTTCAGTGAGCCGCCAT 59.187 50.000 0.00 0.00 0.00 4.40
229 240 1.668867 GCTAGGCGGGGAGAATCTC 59.331 63.158 0.71 0.71 33.73 2.75
275 289 1.559682 ACACACCTCCACACACTTTCT 59.440 47.619 0.00 0.00 0.00 2.52
313 330 7.090953 TCGAAGACAAACACCAAGTAATTTT 57.909 32.000 0.00 0.00 0.00 1.82
314 331 6.687081 TCGAAGACAAACACCAAGTAATTT 57.313 33.333 0.00 0.00 0.00 1.82
320 337 3.138304 TCCATCGAAGACAAACACCAAG 58.862 45.455 0.00 0.00 42.51 3.61
479 498 5.506815 GGGCAAACCTTGTTTTAGTAGACAC 60.507 44.000 0.00 0.00 35.85 3.67
543 563 1.186200 ACAAGCACTCGAGCCAGATA 58.814 50.000 13.61 0.00 34.23 1.98
548 568 0.243907 TGACTACAAGCACTCGAGCC 59.756 55.000 13.61 3.71 34.23 4.70
719 739 8.251026 CGCATGAAGGACTGGTCTTTATATATA 58.749 37.037 0.00 0.00 0.00 0.86
720 740 7.039011 TCGCATGAAGGACTGGTCTTTATATAT 60.039 37.037 0.00 0.00 0.00 0.86
721 741 6.266786 TCGCATGAAGGACTGGTCTTTATATA 59.733 38.462 0.00 0.00 0.00 0.86
722 742 5.070446 TCGCATGAAGGACTGGTCTTTATAT 59.930 40.000 0.00 0.00 0.00 0.86
723 743 4.404394 TCGCATGAAGGACTGGTCTTTATA 59.596 41.667 0.00 0.00 0.00 0.98
724 744 3.197766 TCGCATGAAGGACTGGTCTTTAT 59.802 43.478 0.00 0.00 0.00 1.40
725 745 2.565391 TCGCATGAAGGACTGGTCTTTA 59.435 45.455 0.00 0.00 0.00 1.85
734 754 4.474226 GATTGGTTATCGCATGAAGGAC 57.526 45.455 0.00 0.00 0.00 3.85
814 835 3.520290 TCTCGTGTTGTTTCTCACTGT 57.480 42.857 0.00 0.00 33.07 3.55
825 846 4.847365 ACGAATCATTGATCTCGTGTTG 57.153 40.909 23.52 7.42 42.54 3.33
828 849 5.648033 ATCAACGAATCATTGATCTCGTG 57.352 39.130 24.23 19.81 41.89 4.35
864 885 4.021981 GGTATACCCGTATAGACAACCCAC 60.022 50.000 11.17 0.00 0.00 4.61
927 954 0.529992 ACAGTCTAAATAGGCGGCGC 60.530 55.000 26.17 26.17 32.01 6.53
1042 1069 1.313772 GAGATGCAGAGGAGTAGCGA 58.686 55.000 0.00 0.00 0.00 4.93
1044 1071 0.678950 GGGAGATGCAGAGGAGTAGC 59.321 60.000 0.00 0.00 0.00 3.58
1047 1074 1.336632 GCAGGGAGATGCAGAGGAGT 61.337 60.000 0.00 0.00 45.77 3.85
1154 1181 0.460987 ATGCAAGCGACAGAGTAGGC 60.461 55.000 0.00 0.00 0.00 3.93
1157 1184 2.095768 GCAAAATGCAAGCGACAGAGTA 60.096 45.455 0.00 0.00 44.26 2.59
1158 1185 1.335324 GCAAAATGCAAGCGACAGAGT 60.335 47.619 0.00 0.00 44.26 3.24
1160 1187 3.477504 GCAAAATGCAAGCGACAGA 57.522 47.368 0.00 0.00 44.26 3.41
1180 1209 4.133078 AGAGAAAATTGGGATCGAGATGC 58.867 43.478 0.00 0.00 0.00 3.91
1369 1418 1.171308 TTCTTGCATGAGAAGCTGGC 58.829 50.000 0.00 0.00 32.19 4.85
1425 1474 5.936956 GCTCCCTGAGACCAATAATAAGATG 59.063 44.000 0.00 0.00 0.00 2.90
1426 1475 5.279708 CGCTCCCTGAGACCAATAATAAGAT 60.280 44.000 0.00 0.00 0.00 2.40
1427 1476 4.039245 CGCTCCCTGAGACCAATAATAAGA 59.961 45.833 0.00 0.00 0.00 2.10
1428 1477 4.202264 ACGCTCCCTGAGACCAATAATAAG 60.202 45.833 0.00 0.00 0.00 1.73
1429 1478 3.709653 ACGCTCCCTGAGACCAATAATAA 59.290 43.478 0.00 0.00 0.00 1.40
1430 1479 3.305720 ACGCTCCCTGAGACCAATAATA 58.694 45.455 0.00 0.00 0.00 0.98
1431 1480 2.103263 GACGCTCCCTGAGACCAATAAT 59.897 50.000 0.00 0.00 0.00 1.28
1432 1481 1.480954 GACGCTCCCTGAGACCAATAA 59.519 52.381 0.00 0.00 0.00 1.40
1433 1482 1.112113 GACGCTCCCTGAGACCAATA 58.888 55.000 0.00 0.00 0.00 1.90
1434 1483 1.901085 GACGCTCCCTGAGACCAAT 59.099 57.895 0.00 0.00 0.00 3.16
1435 1484 2.636412 CGACGCTCCCTGAGACCAA 61.636 63.158 0.00 0.00 0.00 3.67
1436 1485 3.062466 CGACGCTCCCTGAGACCA 61.062 66.667 0.00 0.00 0.00 4.02
1437 1486 3.827898 CCGACGCTCCCTGAGACC 61.828 72.222 0.00 0.00 0.00 3.85
1617 1671 3.378427 ACGTACTCGGTTGGTAAGGTATC 59.622 47.826 0.00 0.00 41.85 2.24
1619 1673 2.487762 CACGTACTCGGTTGGTAAGGTA 59.512 50.000 0.00 0.00 41.85 3.08
1621 1675 1.986698 CACGTACTCGGTTGGTAAGG 58.013 55.000 0.00 0.00 41.85 2.69
1622 1676 1.343506 GCACGTACTCGGTTGGTAAG 58.656 55.000 0.00 0.00 41.85 2.34
1623 1677 0.387112 CGCACGTACTCGGTTGGTAA 60.387 55.000 0.00 0.00 41.85 2.85
1978 2037 3.495983 CCACCAATCAGTTCCACACACTA 60.496 47.826 0.00 0.00 0.00 2.74
1991 2080 4.400884 CCGATCCAATTAAACCACCAATCA 59.599 41.667 0.00 0.00 0.00 2.57
1997 2086 2.490115 TGCACCGATCCAATTAAACCAC 59.510 45.455 0.00 0.00 0.00 4.16
2000 2089 2.423538 AGCTGCACCGATCCAATTAAAC 59.576 45.455 1.02 0.00 0.00 2.01
2171 2269 4.141914 ACCGGGCAGTTTGTTTTCAATTTA 60.142 37.500 6.32 0.00 39.70 1.40
2174 2272 1.760029 ACCGGGCAGTTTGTTTTCAAT 59.240 42.857 6.32 0.00 39.70 2.57
2177 2275 0.741915 TGACCGGGCAGTTTGTTTTC 59.258 50.000 5.41 0.00 0.00 2.29
2538 2638 2.927856 TTGGAGCCGGCTTCCTCA 60.928 61.111 32.08 22.51 0.00 3.86
2593 2693 5.455040 GGATGATCTTGAGCTTCTCCTTGAT 60.455 44.000 0.00 0.00 0.00 2.57
2625 2725 4.363990 ACGCAGGCTCACTCGTGG 62.364 66.667 0.00 0.00 33.71 4.94
2849 2950 8.072238 TGCATCGATATGTACAGTTTAACATC 57.928 34.615 0.33 0.00 37.50 3.06
2864 2965 2.771089 AGCCATCGTTTGCATCGATAT 58.229 42.857 20.99 11.36 44.49 1.63
2865 2966 2.238942 AGCCATCGTTTGCATCGATA 57.761 45.000 20.99 2.39 44.49 2.92
2886 2987 4.899502 AGAGTAAATCAGTCACAACCCAG 58.100 43.478 0.00 0.00 0.00 4.45
2891 2992 5.474578 AGCAGAGAGTAAATCAGTCACAA 57.525 39.130 0.00 0.00 0.00 3.33
2934 3035 0.109735 CGTAAGACAGCAGCTCGTCA 60.110 55.000 20.41 5.00 43.02 4.35
3003 3104 6.192234 AGAGAGTAAAAGCAATGCAGATTG 57.808 37.500 8.35 0.00 41.82 2.67
3004 3105 6.127786 GGAAGAGAGTAAAAGCAATGCAGATT 60.128 38.462 8.35 1.60 0.00 2.40
3005 3106 5.356470 GGAAGAGAGTAAAAGCAATGCAGAT 59.644 40.000 8.35 0.00 0.00 2.90
3006 3107 4.697352 GGAAGAGAGTAAAAGCAATGCAGA 59.303 41.667 8.35 0.00 0.00 4.26
3047 3148 5.578776 AGCTGGAAAAGAGTAAAAACAACG 58.421 37.500 0.00 0.00 0.00 4.10
3048 3149 6.560711 TGAGCTGGAAAAGAGTAAAAACAAC 58.439 36.000 0.00 0.00 0.00 3.32
3049 3150 6.767524 TGAGCTGGAAAAGAGTAAAAACAA 57.232 33.333 0.00 0.00 0.00 2.83
3062 3163 3.440173 CGAGGCTTTTTATGAGCTGGAAA 59.560 43.478 0.00 0.00 40.01 3.13
3072 3173 3.412386 AGCAACTGTCGAGGCTTTTTAT 58.588 40.909 0.00 0.00 31.34 1.40
3119 3222 4.135306 CAGTGAGCTCATTATGGCATTCT 58.865 43.478 21.47 4.95 0.00 2.40
3132 3235 0.312102 GCCAAACAACCAGTGAGCTC 59.688 55.000 6.82 6.82 0.00 4.09
3137 3240 1.204467 ACTTGTGCCAAACAACCAGTG 59.796 47.619 0.00 0.00 43.96 3.66
3216 3319 3.300009 CTTCCGTTTGCAGATGTGTTTC 58.700 45.455 0.00 0.00 0.00 2.78
3217 3320 2.543653 GCTTCCGTTTGCAGATGTGTTT 60.544 45.455 0.00 0.00 0.00 2.83
3218 3321 1.001378 GCTTCCGTTTGCAGATGTGTT 60.001 47.619 0.00 0.00 0.00 3.32
3219 3322 0.593128 GCTTCCGTTTGCAGATGTGT 59.407 50.000 0.00 0.00 0.00 3.72
3220 3323 0.592637 TGCTTCCGTTTGCAGATGTG 59.407 50.000 0.00 0.00 34.84 3.21
3221 3324 0.593128 GTGCTTCCGTTTGCAGATGT 59.407 50.000 0.00 0.00 40.06 3.06
3224 3327 3.744559 GGTGCTTCCGTTTGCAGA 58.255 55.556 0.00 0.00 40.06 4.26
3246 3368 1.859080 CTAATCGCGGTTGCTTACTCC 59.141 52.381 16.41 0.00 39.65 3.85
3420 3542 1.087202 AGTTGTCACTTGCGCGACAA 61.087 50.000 20.12 20.12 46.91 3.18
3442 3564 4.600062 ACCAATACAATCTGGGGAAAGAC 58.400 43.478 0.00 0.00 37.00 3.01
3448 3572 1.488812 TCCGACCAATACAATCTGGGG 59.511 52.381 0.00 0.00 37.00 4.96
3541 3665 1.667236 TGCTTCACTCCACTGTGTTG 58.333 50.000 7.08 1.62 38.90 3.33
3542 3666 2.292267 CTTGCTTCACTCCACTGTGTT 58.708 47.619 7.08 0.00 38.90 3.32
3543 3667 1.959042 CTTGCTTCACTCCACTGTGT 58.041 50.000 7.08 0.00 38.90 3.72
3558 3682 0.670162 TTTCAGCTGAAGTGGCTTGC 59.330 50.000 27.02 0.00 38.03 4.01
3569 3693 1.401530 CAACATGCACGTTTCAGCTG 58.598 50.000 7.63 7.63 0.00 4.24
3659 3783 8.594550 AGACGATGCCCTAAGTAAATTATATGT 58.405 33.333 0.00 0.00 0.00 2.29
3685 3809 1.369692 CGCCCTCTAACCACACACA 59.630 57.895 0.00 0.00 0.00 3.72
3753 3911 6.942976 TGGAGGGAGTACAATACAAGTAAAG 58.057 40.000 0.00 0.00 0.00 1.85
3755 3913 7.402071 AGAATGGAGGGAGTACAATACAAGTAA 59.598 37.037 0.00 0.00 0.00 2.24
3756 3914 6.901300 AGAATGGAGGGAGTACAATACAAGTA 59.099 38.462 0.00 0.00 0.00 2.24
3757 3915 5.726793 AGAATGGAGGGAGTACAATACAAGT 59.273 40.000 0.00 0.00 0.00 3.16
3758 3916 6.240549 AGAATGGAGGGAGTACAATACAAG 57.759 41.667 0.00 0.00 0.00 3.16
3759 3917 7.743116 TTAGAATGGAGGGAGTACAATACAA 57.257 36.000 0.00 0.00 0.00 2.41
3763 3921 9.225682 TCTATTTTAGAATGGAGGGAGTACAAT 57.774 33.333 0.00 0.00 30.37 2.71
3764 3922 8.618240 TCTATTTTAGAATGGAGGGAGTACAA 57.382 34.615 0.00 0.00 30.37 2.41
3765 3923 8.651389 CATCTATTTTAGAATGGAGGGAGTACA 58.349 37.037 0.00 0.00 36.39 2.90
3766 3924 8.871125 TCATCTATTTTAGAATGGAGGGAGTAC 58.129 37.037 4.57 0.00 36.39 2.73
3767 3925 8.871125 GTCATCTATTTTAGAATGGAGGGAGTA 58.129 37.037 4.57 0.00 36.39 2.59
3768 3926 7.202139 GGTCATCTATTTTAGAATGGAGGGAGT 60.202 40.741 4.57 0.00 36.39 3.85
3769 3927 7.164803 GGTCATCTATTTTAGAATGGAGGGAG 58.835 42.308 4.57 0.00 36.39 4.30
3770 3928 6.044404 GGGTCATCTATTTTAGAATGGAGGGA 59.956 42.308 4.57 0.04 36.39 4.20
3771 3929 6.183361 TGGGTCATCTATTTTAGAATGGAGGG 60.183 42.308 4.57 0.00 36.39 4.30
3772 3930 6.841601 TGGGTCATCTATTTTAGAATGGAGG 58.158 40.000 0.00 0.00 36.39 4.30
3773 3931 7.995488 AGTTGGGTCATCTATTTTAGAATGGAG 59.005 37.037 0.00 0.00 36.39 3.86
3774 3932 7.872138 AGTTGGGTCATCTATTTTAGAATGGA 58.128 34.615 0.00 0.00 38.50 3.41
3775 3933 8.525290 AAGTTGGGTCATCTATTTTAGAATGG 57.475 34.615 0.00 0.00 38.50 3.16
3782 3940 8.470002 GCTTCATAAAGTTGGGTCATCTATTTT 58.530 33.333 0.00 0.00 34.79 1.82
3783 3941 7.836183 AGCTTCATAAAGTTGGGTCATCTATTT 59.164 33.333 0.00 0.00 34.79 1.40
3784 3942 7.349598 AGCTTCATAAAGTTGGGTCATCTATT 58.650 34.615 0.00 0.00 34.79 1.73
3785 3943 6.904626 AGCTTCATAAAGTTGGGTCATCTAT 58.095 36.000 0.00 0.00 34.79 1.98
3786 3944 6.313519 AGCTTCATAAAGTTGGGTCATCTA 57.686 37.500 0.00 0.00 34.79 1.98
3787 3945 5.184892 AGCTTCATAAAGTTGGGTCATCT 57.815 39.130 0.00 0.00 34.79 2.90
3788 3946 4.034510 CGAGCTTCATAAAGTTGGGTCATC 59.965 45.833 0.00 0.00 34.79 2.92
3789 3947 3.941483 CGAGCTTCATAAAGTTGGGTCAT 59.059 43.478 0.00 0.00 34.79 3.06
3790 3948 3.007506 TCGAGCTTCATAAAGTTGGGTCA 59.992 43.478 0.00 0.00 34.79 4.02
3791 3949 3.371285 GTCGAGCTTCATAAAGTTGGGTC 59.629 47.826 0.00 0.00 34.79 4.46
3792 3950 3.335579 GTCGAGCTTCATAAAGTTGGGT 58.664 45.455 0.00 0.00 34.79 4.51
3793 3951 2.348666 CGTCGAGCTTCATAAAGTTGGG 59.651 50.000 0.00 0.00 34.79 4.12
3794 3952 2.993899 ACGTCGAGCTTCATAAAGTTGG 59.006 45.455 0.00 0.00 34.79 3.77
3795 3953 3.673338 TCACGTCGAGCTTCATAAAGTTG 59.327 43.478 0.00 0.00 34.79 3.16
3796 3954 3.909430 TCACGTCGAGCTTCATAAAGTT 58.091 40.909 0.00 0.00 34.79 2.66
3797 3955 3.570926 TCACGTCGAGCTTCATAAAGT 57.429 42.857 0.00 0.00 34.79 2.66
3802 3960 1.394917 GCAAATCACGTCGAGCTTCAT 59.605 47.619 0.00 0.00 0.00 2.57
3810 3968 1.006825 TGGTCGAGCAAATCACGTCG 61.007 55.000 16.20 0.00 0.00 5.12
3813 3971 0.443869 CCTTGGTCGAGCAAATCACG 59.556 55.000 28.03 16.93 0.00 4.35
3893 4051 7.385205 GCCGAGTCTAAATATTGCAAGAATCTA 59.615 37.037 4.94 0.00 32.43 1.98
3918 4076 7.707104 ACATTGTATAATTTAGAGGCACAAGC 58.293 34.615 0.00 0.00 41.10 4.01
3935 4093 8.778059 TCCCATCTAAAAAGTAGGACATTGTAT 58.222 33.333 0.00 0.00 0.00 2.29
3939 4097 6.113411 CGTCCCATCTAAAAAGTAGGACATT 58.887 40.000 7.04 0.00 41.93 2.71
3940 4098 5.396436 CCGTCCCATCTAAAAAGTAGGACAT 60.396 44.000 7.04 0.00 41.93 3.06
3942 4100 4.439968 CCGTCCCATCTAAAAAGTAGGAC 58.560 47.826 0.00 0.00 39.13 3.85
3943 4101 3.453353 CCCGTCCCATCTAAAAAGTAGGA 59.547 47.826 0.00 0.00 0.00 2.94
3944 4102 3.805207 CCCGTCCCATCTAAAAAGTAGG 58.195 50.000 0.00 0.00 0.00 3.18
3953 4111 0.032515 TCTTCAGCCCGTCCCATCTA 60.033 55.000 0.00 0.00 0.00 1.98
3962 4120 0.321671 TCAGGAAGTTCTTCAGCCCG 59.678 55.000 13.44 0.00 0.00 6.13
4120 4278 1.136147 CATTCTGTTCGCCAGCAGC 59.864 57.895 0.00 0.00 41.25 5.25
4122 4280 0.534877 ACACATTCTGTTCGCCAGCA 60.535 50.000 0.00 0.00 41.25 4.41
4123 4281 0.593128 AACACATTCTGTTCGCCAGC 59.407 50.000 0.00 0.00 38.94 4.85
4124 4282 3.044986 CAAAACACATTCTGTTCGCCAG 58.955 45.455 0.00 0.00 42.70 4.85
4125 4283 2.797792 GCAAAACACATTCTGTTCGCCA 60.798 45.455 0.00 0.00 42.70 5.69
4126 4284 1.786579 GCAAAACACATTCTGTTCGCC 59.213 47.619 0.00 0.00 42.70 5.54
4127 4285 2.721090 GAGCAAAACACATTCTGTTCGC 59.279 45.455 0.00 0.00 42.70 4.70
4128 4286 3.951306 TGAGCAAAACACATTCTGTTCG 58.049 40.909 0.00 0.00 42.70 3.95
4134 4292 5.116074 CACGAGAAATGAGCAAAACACATTC 59.884 40.000 0.00 0.00 38.44 2.67
4138 4296 3.725740 CACACGAGAAATGAGCAAAACAC 59.274 43.478 0.00 0.00 0.00 3.32
4141 4299 4.756642 AGATCACACGAGAAATGAGCAAAA 59.243 37.500 0.00 0.00 31.15 2.44
4148 4306 3.124128 CACCACAGATCACACGAGAAATG 59.876 47.826 0.00 0.00 0.00 2.32
4184 4342 3.866379 AATGCAAGGCTGGTCGGCA 62.866 57.895 4.06 0.00 41.46 5.69
4232 4390 2.443016 ACCTAGCCGGCTGGAGAG 60.443 66.667 38.41 26.89 37.49 3.20
4242 4400 0.757561 GTCCTCCTCCTCACCTAGCC 60.758 65.000 0.00 0.00 0.00 3.93
4249 4407 2.299727 GATCCGGGTCCTCCTCCTCA 62.300 65.000 2.19 0.00 0.00 3.86
4250 4408 1.532078 GATCCGGGTCCTCCTCCTC 60.532 68.421 2.19 0.00 0.00 3.71
4251 4409 2.305314 CTGATCCGGGTCCTCCTCCT 62.305 65.000 13.41 0.00 0.00 3.69
4285 4446 9.157104 CTTCTATCTTCAGTTTCCTTTTCCTAC 57.843 37.037 0.00 0.00 0.00 3.18
4329 4490 4.274602 TCATCGCCCTTTAAAGTACACA 57.725 40.909 14.03 0.00 0.00 3.72
4421 4583 5.694910 CGTGAAAGAAGCTCTAAAAGGTGTA 59.305 40.000 0.00 0.00 35.40 2.90
4483 4645 7.114670 TGTTTGAACATCGCATTTCTACAAATG 59.885 33.333 0.00 0.00 41.67 2.32
4519 4681 1.664874 CCTTTTCGCCTTTTGTACCGC 60.665 52.381 0.00 0.00 0.00 5.68
4525 4687 6.616947 TGATGTTATACCTTTTCGCCTTTTG 58.383 36.000 0.00 0.00 0.00 2.44
4545 4707 6.927416 TGGAGATGTTCTTTCCATTTTGATG 58.073 36.000 0.00 0.00 36.13 3.07
4561 4723 0.773644 AGGGCTGTTGTTGGAGATGT 59.226 50.000 0.00 0.00 0.00 3.06
4649 4811 5.403466 GCAGTTGTTGGAGATGAACATTTTC 59.597 40.000 0.00 0.00 33.41 2.29
4653 4815 2.821969 GGCAGTTGTTGGAGATGAACAT 59.178 45.455 0.00 0.00 33.41 2.71
4676 4838 7.517614 TGCATGTTTGAAGTGTCCTATTTTA 57.482 32.000 0.00 0.00 0.00 1.52
4703 4865 7.506971 AGGCCTCTACCATTTGTAGTATAAAC 58.493 38.462 0.00 0.00 45.99 2.01
4704 4866 7.685849 AGGCCTCTACCATTTGTAGTATAAA 57.314 36.000 0.00 0.00 45.99 1.40
4705 4867 7.567622 AGAAGGCCTCTACCATTTGTAGTATAA 59.432 37.037 5.23 0.00 45.99 0.98
4707 4869 5.905913 AGAAGGCCTCTACCATTTGTAGTAT 59.094 40.000 5.23 0.00 45.99 2.12
4709 4871 4.104831 AGAAGGCCTCTACCATTTGTAGT 58.895 43.478 5.23 0.00 45.99 2.73
4711 4873 4.324254 CCAAGAAGGCCTCTACCATTTGTA 60.324 45.833 5.23 0.00 32.46 2.41
4712 4874 3.562176 CCAAGAAGGCCTCTACCATTTGT 60.562 47.826 5.23 0.00 32.46 2.83
4713 4875 3.019564 CCAAGAAGGCCTCTACCATTTG 58.980 50.000 5.23 3.42 32.46 2.32
4714 4876 2.024941 CCCAAGAAGGCCTCTACCATTT 60.025 50.000 5.23 0.00 32.46 2.32
4715 4877 1.566231 CCCAAGAAGGCCTCTACCATT 59.434 52.381 5.23 0.00 32.46 3.16
4716 4878 1.216990 CCCAAGAAGGCCTCTACCAT 58.783 55.000 5.23 0.00 32.46 3.55
4717 4879 0.914417 CCCCAAGAAGGCCTCTACCA 60.914 60.000 5.23 0.00 32.46 3.25
4718 4880 1.636769 CCCCCAAGAAGGCCTCTACC 61.637 65.000 5.23 0.00 32.46 3.18
4719 4881 0.620700 TCCCCCAAGAAGGCCTCTAC 60.621 60.000 5.23 0.25 32.46 2.59
4720 4882 0.326618 CTCCCCCAAGAAGGCCTCTA 60.327 60.000 5.23 0.00 32.46 2.43
4721 4883 1.617839 CTCCCCCAAGAAGGCCTCT 60.618 63.158 5.23 1.59 35.39 3.69
4722 4884 3.002371 CTCCCCCAAGAAGGCCTC 58.998 66.667 5.23 0.00 35.39 4.70
4723 4885 3.342477 GCTCCCCCAAGAAGGCCT 61.342 66.667 0.00 0.00 35.39 5.19
4724 4886 4.803908 CGCTCCCCCAAGAAGGCC 62.804 72.222 0.00 0.00 35.39 5.19
4725 4887 3.569200 AACGCTCCCCCAAGAAGGC 62.569 63.158 0.00 0.00 35.39 4.35
4726 4888 1.675641 CAACGCTCCCCCAAGAAGG 60.676 63.158 0.00 0.00 37.03 3.46
4727 4889 1.073199 ACAACGCTCCCCCAAGAAG 59.927 57.895 0.00 0.00 0.00 2.85
4728 4890 1.228124 CACAACGCTCCCCCAAGAA 60.228 57.895 0.00 0.00 0.00 2.52
4729 4891 2.429930 CACAACGCTCCCCCAAGA 59.570 61.111 0.00 0.00 0.00 3.02
4730 4892 3.365265 GCACAACGCTCCCCCAAG 61.365 66.667 0.00 0.00 37.77 3.61
4740 4902 3.636231 TCCCAGGGGAGCACAACG 61.636 66.667 5.33 0.00 39.76 4.10
4748 4910 3.607299 TCCGTTCCTCCCAGGGGA 61.607 66.667 5.33 6.92 42.90 4.81
4749 4911 3.083997 CTCCGTTCCTCCCAGGGG 61.084 72.222 5.33 0.92 35.59 4.79
4750 4912 3.787001 GCTCCGTTCCTCCCAGGG 61.787 72.222 0.00 0.00 35.59 4.45
4751 4913 3.787001 GGCTCCGTTCCTCCCAGG 61.787 72.222 0.00 0.00 36.46 4.45
4752 4914 4.148825 CGGCTCCGTTCCTCCCAG 62.149 72.222 0.00 0.00 34.35 4.45
4755 4917 2.459202 TTTTCCGGCTCCGTTCCTCC 62.459 60.000 7.59 0.00 37.81 4.30
4756 4918 0.392595 ATTTTCCGGCTCCGTTCCTC 60.393 55.000 7.59 0.00 37.81 3.71
4757 4919 0.676782 CATTTTCCGGCTCCGTTCCT 60.677 55.000 7.59 0.00 37.81 3.36
4758 4920 0.675522 TCATTTTCCGGCTCCGTTCC 60.676 55.000 7.59 0.00 37.81 3.62
4759 4921 1.161843 TTCATTTTCCGGCTCCGTTC 58.838 50.000 7.59 0.00 37.81 3.95
4760 4922 1.539827 CTTTCATTTTCCGGCTCCGTT 59.460 47.619 7.59 0.00 37.81 4.44
4761 4923 1.165270 CTTTCATTTTCCGGCTCCGT 58.835 50.000 7.59 0.00 37.81 4.69
4762 4924 1.130561 GACTTTCATTTTCCGGCTCCG 59.869 52.381 0.00 0.48 39.44 4.63
4763 4925 1.472878 GGACTTTCATTTTCCGGCTCC 59.527 52.381 0.00 0.00 0.00 4.70
4764 4926 2.437413 AGGACTTTCATTTTCCGGCTC 58.563 47.619 0.00 0.00 34.31 4.70
4765 4927 2.586648 AGGACTTTCATTTTCCGGCT 57.413 45.000 0.00 0.00 34.31 5.52
4766 4928 2.414161 CGAAGGACTTTCATTTTCCGGC 60.414 50.000 0.00 0.00 35.43 6.13
4767 4929 2.414161 GCGAAGGACTTTCATTTTCCGG 60.414 50.000 0.00 0.00 35.43 5.14
4768 4930 2.724839 CGCGAAGGACTTTCATTTTCCG 60.725 50.000 0.00 0.00 35.43 4.30
4769 4931 2.225727 ACGCGAAGGACTTTCATTTTCC 59.774 45.455 15.93 0.00 35.43 3.13
4770 4932 3.537793 ACGCGAAGGACTTTCATTTTC 57.462 42.857 15.93 0.00 35.43 2.29
4771 4933 3.606153 CGAACGCGAAGGACTTTCATTTT 60.606 43.478 15.93 0.00 40.82 1.82
4772 4934 2.096417 CGAACGCGAAGGACTTTCATTT 60.096 45.455 15.93 0.00 40.82 2.32
4773 4935 1.459592 CGAACGCGAAGGACTTTCATT 59.540 47.619 15.93 0.00 40.82 2.57
4774 4936 1.068474 CGAACGCGAAGGACTTTCAT 58.932 50.000 15.93 0.00 40.82 2.57
4775 4937 0.942410 CCGAACGCGAAGGACTTTCA 60.942 55.000 15.93 0.00 40.82 2.69
4776 4938 0.665369 TCCGAACGCGAAGGACTTTC 60.665 55.000 15.93 2.73 40.82 2.62
4777 4939 0.666577 CTCCGAACGCGAAGGACTTT 60.667 55.000 15.93 0.00 40.82 2.66
4778 4940 1.080705 CTCCGAACGCGAAGGACTT 60.081 57.895 15.93 0.00 40.82 3.01
4779 4941 2.567049 CTCCGAACGCGAAGGACT 59.433 61.111 15.93 0.00 40.82 3.85
4780 4942 2.506438 CCTCCGAACGCGAAGGAC 60.506 66.667 15.93 0.00 40.82 3.85
4781 4943 2.674033 TCCTCCGAACGCGAAGGA 60.674 61.111 15.93 17.03 40.82 3.36
4782 4944 2.202623 CTCCTCCGAACGCGAAGG 60.203 66.667 15.93 13.26 40.82 3.46
4783 4945 1.226435 CTCTCCTCCGAACGCGAAG 60.226 63.158 15.93 2.74 40.82 3.79
4784 4946 1.239296 TTCTCTCCTCCGAACGCGAA 61.239 55.000 15.93 0.00 40.82 4.70
4785 4947 1.673337 TTCTCTCCTCCGAACGCGA 60.673 57.895 15.93 0.00 40.82 5.87
4786 4948 1.514443 GTTCTCTCCTCCGAACGCG 60.514 63.158 3.53 3.53 31.38 6.01
4787 4949 1.153804 GGTTCTCTCCTCCGAACGC 60.154 63.158 0.00 0.00 40.21 4.84
4788 4950 0.452585 GAGGTTCTCTCCTCCGAACG 59.547 60.000 1.70 0.00 45.84 3.95
4797 4959 0.108567 GACGCCTTGGAGGTTCTCTC 60.109 60.000 0.00 0.00 37.80 3.20
4798 4960 0.832135 TGACGCCTTGGAGGTTCTCT 60.832 55.000 0.00 0.00 37.80 3.10
4799 4961 0.250513 ATGACGCCTTGGAGGTTCTC 59.749 55.000 0.00 0.00 37.80 2.87
4800 4962 1.207329 GTATGACGCCTTGGAGGTTCT 59.793 52.381 0.00 0.00 37.80 3.01
4801 4963 1.653151 GTATGACGCCTTGGAGGTTC 58.347 55.000 0.00 0.00 37.80 3.62
4802 4964 0.108329 CGTATGACGCCTTGGAGGTT 60.108 55.000 0.00 0.00 37.80 3.50
4803 4965 1.515954 CGTATGACGCCTTGGAGGT 59.484 57.895 0.00 0.00 37.80 3.85
4804 4966 4.420143 CGTATGACGCCTTGGAGG 57.580 61.111 0.00 0.00 38.80 4.30
4814 4976 9.297586 TGTGATTTCATTAGACTAACGTATGAC 57.702 33.333 0.00 0.00 0.00 3.06
4815 4977 9.863845 TTGTGATTTCATTAGACTAACGTATGA 57.136 29.630 0.00 0.00 0.00 2.15
4820 4982 9.199184 CGATTTTGTGATTTCATTAGACTAACG 57.801 33.333 0.00 0.00 0.00 3.18
4821 4983 9.000018 GCGATTTTGTGATTTCATTAGACTAAC 58.000 33.333 0.00 0.00 0.00 2.34
4822 4984 7.902917 CGCGATTTTGTGATTTCATTAGACTAA 59.097 33.333 0.00 0.00 0.00 2.24
4823 4985 7.398746 CGCGATTTTGTGATTTCATTAGACTA 58.601 34.615 0.00 0.00 0.00 2.59
4824 4986 6.250819 CGCGATTTTGTGATTTCATTAGACT 58.749 36.000 0.00 0.00 0.00 3.24
4825 4987 5.452302 CCGCGATTTTGTGATTTCATTAGAC 59.548 40.000 8.23 0.00 0.00 2.59
4826 4988 5.352846 TCCGCGATTTTGTGATTTCATTAGA 59.647 36.000 8.23 0.00 0.00 2.10
4827 4989 5.568482 TCCGCGATTTTGTGATTTCATTAG 58.432 37.500 8.23 0.00 0.00 1.73
4828 4990 5.553290 TCCGCGATTTTGTGATTTCATTA 57.447 34.783 8.23 0.00 0.00 1.90
4829 4991 4.433186 TCCGCGATTTTGTGATTTCATT 57.567 36.364 8.23 0.00 0.00 2.57
4830 4992 4.433186 TTCCGCGATTTTGTGATTTCAT 57.567 36.364 8.23 0.00 0.00 2.57
4831 4993 3.906014 TTCCGCGATTTTGTGATTTCA 57.094 38.095 8.23 0.00 0.00 2.69
4832 4994 4.679654 ACTTTTCCGCGATTTTGTGATTTC 59.320 37.500 8.23 0.00 0.00 2.17
4833 4995 4.616953 ACTTTTCCGCGATTTTGTGATTT 58.383 34.783 8.23 0.00 0.00 2.17
4834 4996 4.237349 ACTTTTCCGCGATTTTGTGATT 57.763 36.364 8.23 0.00 0.00 2.57
4835 4997 3.915437 ACTTTTCCGCGATTTTGTGAT 57.085 38.095 8.23 0.00 0.00 3.06
4836 4998 3.367607 CAACTTTTCCGCGATTTTGTGA 58.632 40.909 8.23 0.00 0.00 3.58
4837 4999 2.470999 CCAACTTTTCCGCGATTTTGTG 59.529 45.455 8.23 0.00 0.00 3.33
4838 5000 2.544903 CCCAACTTTTCCGCGATTTTGT 60.545 45.455 8.23 0.00 0.00 2.83
4839 5001 2.058057 CCCAACTTTTCCGCGATTTTG 58.942 47.619 8.23 1.71 0.00 2.44
4840 5002 1.604438 GCCCAACTTTTCCGCGATTTT 60.604 47.619 8.23 0.00 0.00 1.82
4841 5003 0.038618 GCCCAACTTTTCCGCGATTT 60.039 50.000 8.23 0.00 0.00 2.17
4842 5004 1.175983 TGCCCAACTTTTCCGCGATT 61.176 50.000 8.23 0.00 0.00 3.34
4843 5005 1.586154 CTGCCCAACTTTTCCGCGAT 61.586 55.000 8.23 0.00 0.00 4.58
4844 5006 2.203224 TGCCCAACTTTTCCGCGA 60.203 55.556 8.23 0.00 0.00 5.87
4845 5007 2.255252 CTGCCCAACTTTTCCGCG 59.745 61.111 0.00 0.00 0.00 6.46
4846 5008 2.650778 CCTGCCCAACTTTTCCGC 59.349 61.111 0.00 0.00 0.00 5.54
4847 5009 2.275380 CCCCTGCCCAACTTTTCCG 61.275 63.158 0.00 0.00 0.00 4.30
4848 5010 1.913262 CCCCCTGCCCAACTTTTCC 60.913 63.158 0.00 0.00 0.00 3.13
4849 5011 1.152333 ACCCCCTGCCCAACTTTTC 60.152 57.895 0.00 0.00 0.00 2.29
4850 5012 1.152333 GACCCCCTGCCCAACTTTT 60.152 57.895 0.00 0.00 0.00 2.27
4851 5013 1.955458 TTGACCCCCTGCCCAACTTT 61.955 55.000 0.00 0.00 0.00 2.66
4852 5014 2.399607 TTGACCCCCTGCCCAACTT 61.400 57.895 0.00 0.00 0.00 2.66
4853 5015 2.780924 TTGACCCCCTGCCCAACT 60.781 61.111 0.00 0.00 0.00 3.16
4854 5016 2.600470 GTTGACCCCCTGCCCAAC 60.600 66.667 0.00 0.00 33.24 3.77
4855 5017 3.106609 TGTTGACCCCCTGCCCAA 61.107 61.111 0.00 0.00 0.00 4.12
4856 5018 3.897122 GTGTTGACCCCCTGCCCA 61.897 66.667 0.00 0.00 0.00 5.36
4857 5019 4.678743 GGTGTTGACCCCCTGCCC 62.679 72.222 0.00 0.00 36.03 5.36
4865 5027 4.717313 GGAGGGGCGGTGTTGACC 62.717 72.222 0.00 0.00 39.14 4.02
4879 5041 2.525381 AGCTATCCCCAGCCGGAG 60.525 66.667 5.05 0.00 42.84 4.63
4880 5042 2.524394 GAGCTATCCCCAGCCGGA 60.524 66.667 5.05 0.00 42.84 5.14
4881 5043 3.996124 CGAGCTATCCCCAGCCGG 61.996 72.222 0.00 0.00 42.84 6.13
4882 5044 3.996124 CCGAGCTATCCCCAGCCG 61.996 72.222 0.00 0.00 42.84 5.52
4883 5045 4.321966 GCCGAGCTATCCCCAGCC 62.322 72.222 0.00 0.00 42.84 4.85
4884 5046 3.233259 GAGCCGAGCTATCCCCAGC 62.233 68.421 0.00 0.00 39.88 4.85
4885 5047 2.578714 GGAGCCGAGCTATCCCCAG 61.579 68.421 0.00 0.00 39.88 4.45
4886 5048 2.524394 GGAGCCGAGCTATCCCCA 60.524 66.667 0.00 0.00 39.88 4.96
4887 5049 3.686045 CGGAGCCGAGCTATCCCC 61.686 72.222 2.00 0.00 39.88 4.81
4906 5068 0.606096 AAGTACGCAAAATTGGCCCC 59.394 50.000 0.00 0.00 0.00 5.80
4960 7938 1.604604 CCGACAACCTTGTGAACCAT 58.395 50.000 0.00 0.00 42.43 3.55
4961 7939 1.098712 GCCGACAACCTTGTGAACCA 61.099 55.000 0.00 0.00 42.43 3.67
4970 7948 1.677552 CTTGGTAGGCCGACAACCT 59.322 57.895 18.37 0.00 41.57 3.50
4977 7955 1.315257 AATGCTTGCTTGGTAGGCCG 61.315 55.000 0.00 0.00 37.67 6.13
5032 8010 6.868622 AGAGAACAATGAGTATAAAGAGCGT 58.131 36.000 0.00 0.00 0.00 5.07
5038 8016 7.824289 CCCAACAGAGAGAACAATGAGTATAAA 59.176 37.037 0.00 0.00 0.00 1.40
5043 8021 3.808618 GCCCAACAGAGAGAACAATGAGT 60.809 47.826 0.00 0.00 0.00 3.41
5046 8024 1.815003 GGCCCAACAGAGAGAACAATG 59.185 52.381 0.00 0.00 0.00 2.82
5048 8026 0.110486 GGGCCCAACAGAGAGAACAA 59.890 55.000 19.95 0.00 0.00 2.83
5060 8038 0.709992 AGCAATAGGAAAGGGCCCAA 59.290 50.000 27.56 1.51 0.00 4.12
5096 8074 0.469705 TGGGTGCAAGCTGGAATTGT 60.470 50.000 0.00 0.00 0.00 2.71
5125 8103 1.682684 CACTCGGGCCTCACTAGGT 60.683 63.158 0.84 0.00 45.64 3.08
5128 8106 2.052690 GCTCACTCGGGCCTCACTA 61.053 63.158 0.84 0.00 0.00 2.74
5131 8109 3.071206 GAGCTCACTCGGGCCTCA 61.071 66.667 9.40 0.00 32.04 3.86
5133 8111 3.073735 CTGAGCTCACTCGGGCCT 61.074 66.667 13.74 0.00 46.69 5.19
5138 8116 6.312426 AGAAATTATTTCACTGAGCTCACTCG 59.688 38.462 13.74 6.07 42.88 4.18
5173 8151 7.855409 CGTTGAAGTGAATTCTACAATGTTTGA 59.145 33.333 7.05 0.00 41.86 2.69
5183 8161 7.310072 TGTTTGAACGTTGAAGTGAATTCTA 57.690 32.000 5.00 0.00 38.83 2.10
5196 8174 7.644986 TCAAAACTTTGAATGTTTGAACGTT 57.355 28.000 0.00 0.00 43.62 3.99
5231 8209 7.201848 CGTGGTAATGTTTAGGGTGATCTAGTA 60.202 40.741 0.00 0.00 0.00 1.82
5232 8210 6.406624 CGTGGTAATGTTTAGGGTGATCTAGT 60.407 42.308 0.00 0.00 0.00 2.57
5233 8211 5.983720 CGTGGTAATGTTTAGGGTGATCTAG 59.016 44.000 0.00 0.00 0.00 2.43
5234 8212 5.657745 TCGTGGTAATGTTTAGGGTGATCTA 59.342 40.000 0.00 0.00 0.00 1.98
5235 8213 4.468510 TCGTGGTAATGTTTAGGGTGATCT 59.531 41.667 0.00 0.00 0.00 2.75
5236 8214 4.761975 TCGTGGTAATGTTTAGGGTGATC 58.238 43.478 0.00 0.00 0.00 2.92
5237 8215 4.829872 TCGTGGTAATGTTTAGGGTGAT 57.170 40.909 0.00 0.00 0.00 3.06
5238 8216 4.678574 CGATCGTGGTAATGTTTAGGGTGA 60.679 45.833 7.03 0.00 0.00 4.02
5239 8217 3.554324 CGATCGTGGTAATGTTTAGGGTG 59.446 47.826 7.03 0.00 0.00 4.61
5241 8219 3.800506 GTCGATCGTGGTAATGTTTAGGG 59.199 47.826 15.94 0.00 0.00 3.53
5242 8220 4.679662 AGTCGATCGTGGTAATGTTTAGG 58.320 43.478 15.94 0.00 0.00 2.69
5243 8221 4.738740 GGAGTCGATCGTGGTAATGTTTAG 59.261 45.833 15.94 0.00 0.00 1.85
5244 8222 4.400251 AGGAGTCGATCGTGGTAATGTTTA 59.600 41.667 15.94 0.00 0.00 2.01
5246 8224 2.758979 AGGAGTCGATCGTGGTAATGTT 59.241 45.455 15.94 0.00 0.00 2.71
5247 8225 2.376109 AGGAGTCGATCGTGGTAATGT 58.624 47.619 15.94 0.00 0.00 2.71
5248 8226 3.606384 CGTAGGAGTCGATCGTGGTAATG 60.606 52.174 15.94 0.00 0.00 1.90
5250 8228 1.935873 CGTAGGAGTCGATCGTGGTAA 59.064 52.381 15.94 0.00 0.00 2.85
5251 8229 1.575244 CGTAGGAGTCGATCGTGGTA 58.425 55.000 15.94 0.00 0.00 3.25
5252 8230 2.391469 CGTAGGAGTCGATCGTGGT 58.609 57.895 15.94 0.26 0.00 4.16



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.