Multiple sequence alignment - TraesCS1B01G184300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G184300 chr1B 100.000 2540 0 0 1 2540 331083038 331085577 0.000000e+00 4691
1 TraesCS1B01G184300 chr1B 89.632 1061 70 18 822 1870 330991305 330992337 0.000000e+00 1314
2 TraesCS1B01G184300 chr1B 90.373 509 37 5 1032 1540 331363528 331364024 0.000000e+00 658
3 TraesCS1B01G184300 chr1B 90.476 294 26 1 1 292 148875520 148875813 1.100000e-103 387
4 TraesCS1B01G184300 chr1B 87.500 328 35 4 420 746 330990948 330991270 8.580000e-100 374
5 TraesCS1B01G184300 chr1A 93.544 1580 51 24 291 1849 300671926 300673475 0.000000e+00 2305
6 TraesCS1B01G184300 chr1A 87.612 1453 102 33 420 1864 300576465 300577847 0.000000e+00 1615
7 TraesCS1B01G184300 chr1A 88.972 535 45 3 1023 1555 300944104 300944626 0.000000e+00 649
8 TraesCS1B01G184300 chr1A 91.304 138 9 1 1921 2055 300673574 300673711 4.320000e-43 185
9 TraesCS1B01G184300 chr1D 91.456 1463 35 28 297 1742 246971327 246969938 0.000000e+00 1927
10 TraesCS1B01G184300 chr1D 86.908 1436 111 28 420 1850 247123878 247122515 0.000000e+00 1539
11 TraesCS1B01G184300 chr1D 89.515 515 42 5 1032 1546 246679934 246679432 2.130000e-180 641
12 TraesCS1B01G184300 chr1D 84.940 498 58 11 2057 2540 246969062 246968568 2.940000e-134 488
13 TraesCS1B01G184300 chr1D 90.526 95 7 1 1921 2013 246969768 246969674 9.540000e-25 124
14 TraesCS1B01G184300 chr5A 80.491 692 84 30 887 1557 491301796 491302457 1.370000e-132 483
15 TraesCS1B01G184300 chr3D 91.554 296 20 4 1 294 59292228 59292520 1.090000e-108 403
16 TraesCS1B01G184300 chr3D 91.186 295 23 2 1 293 497593673 497593966 5.090000e-107 398
17 TraesCS1B01G184300 chr7D 91.468 293 23 1 1 291 49794669 49794961 3.940000e-108 401
18 TraesCS1B01G184300 chr7D 90.572 297 24 3 1 293 599800604 599800308 8.520000e-105 390
19 TraesCS1B01G184300 chr6D 91.468 293 21 2 1 291 472759762 472759472 1.420000e-107 399
20 TraesCS1B01G184300 chr6D 77.821 257 40 13 464 708 46860941 46861192 2.630000e-30 143
21 TraesCS1B01G184300 chr2D 91.126 293 24 1 1 291 38786509 38786801 1.830000e-106 396
22 TraesCS1B01G184300 chr4B 90.444 293 24 3 1 289 659575254 659575546 1.430000e-102 383
23 TraesCS1B01G184300 chr7B 89.899 297 26 3 1 293 732435385 732435089 1.840000e-101 379
24 TraesCS1B01G184300 chr6B 77.907 258 40 13 463 708 116106804 116107056 7.320000e-31 145
25 TraesCS1B01G184300 chr6A 76.680 253 44 11 464 706 60492428 60492675 2.650000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G184300 chr1B 331083038 331085577 2539 False 4691.000000 4691 100.000 1 2540 1 chr1B.!!$F2 2539
1 TraesCS1B01G184300 chr1B 330990948 330992337 1389 False 844.000000 1314 88.566 420 1870 2 chr1B.!!$F4 1450
2 TraesCS1B01G184300 chr1A 300576465 300577847 1382 False 1615.000000 1615 87.612 420 1864 1 chr1A.!!$F1 1444
3 TraesCS1B01G184300 chr1A 300671926 300673711 1785 False 1245.000000 2305 92.424 291 2055 2 chr1A.!!$F3 1764
4 TraesCS1B01G184300 chr1A 300944104 300944626 522 False 649.000000 649 88.972 1023 1555 1 chr1A.!!$F2 532
5 TraesCS1B01G184300 chr1D 247122515 247123878 1363 True 1539.000000 1539 86.908 420 1850 1 chr1D.!!$R2 1430
6 TraesCS1B01G184300 chr1D 246968568 246971327 2759 True 846.333333 1927 88.974 297 2540 3 chr1D.!!$R3 2243
7 TraesCS1B01G184300 chr1D 246679432 246679934 502 True 641.000000 641 89.515 1032 1546 1 chr1D.!!$R1 514
8 TraesCS1B01G184300 chr5A 491301796 491302457 661 False 483.000000 483 80.491 887 1557 1 chr5A.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
131 132 0.032615 TGGTGGTCTGTTTGGCCTTT 60.033 50.0 3.32 0.0 42.07 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2890 0.10852 CGACTAAACTAGCCCGGCAA 60.109 55.0 13.15 0.0 0.0 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.181367 GCCATGCGAGTCAGGTTG 58.819 61.111 0.00 0.00 0.00 3.77
19 20 2.401766 GCCATGCGAGTCAGGTTGG 61.402 63.158 0.00 0.00 0.00 3.77
20 21 1.746615 CCATGCGAGTCAGGTTGGG 60.747 63.158 0.00 0.00 0.00 4.12
21 22 2.045926 ATGCGAGTCAGGTTGGGC 60.046 61.111 0.00 0.00 0.00 5.36
22 23 3.958147 ATGCGAGTCAGGTTGGGCG 62.958 63.158 0.00 0.00 0.00 6.13
29 30 4.785453 CAGGTTGGGCGCCCTCTC 62.785 72.222 43.34 30.81 36.94 3.20
43 44 3.956377 TCTCGGGATTGGAGAGGC 58.044 61.111 0.00 0.00 35.70 4.70
44 45 1.001631 TCTCGGGATTGGAGAGGCA 59.998 57.895 0.00 0.00 35.70 4.75
45 46 1.144936 CTCGGGATTGGAGAGGCAC 59.855 63.158 0.00 0.00 33.27 5.01
46 47 1.612146 TCGGGATTGGAGAGGCACA 60.612 57.895 0.00 0.00 0.00 4.57
47 48 0.982852 TCGGGATTGGAGAGGCACAT 60.983 55.000 0.00 0.00 0.00 3.21
48 49 0.816825 CGGGATTGGAGAGGCACATG 60.817 60.000 0.00 0.00 0.00 3.21
49 50 0.257039 GGGATTGGAGAGGCACATGT 59.743 55.000 0.00 0.00 0.00 3.21
50 51 1.341383 GGGATTGGAGAGGCACATGTT 60.341 52.381 0.00 0.00 0.00 2.71
51 52 2.019984 GGATTGGAGAGGCACATGTTC 58.980 52.381 0.00 0.00 0.00 3.18
52 53 1.667724 GATTGGAGAGGCACATGTTCG 59.332 52.381 0.00 0.00 0.00 3.95
53 54 0.955428 TTGGAGAGGCACATGTTCGC 60.955 55.000 0.00 0.00 0.00 4.70
54 55 1.078848 GGAGAGGCACATGTTCGCT 60.079 57.895 7.96 5.22 0.00 4.93
55 56 1.086634 GGAGAGGCACATGTTCGCTC 61.087 60.000 16.30 16.30 0.00 5.03
56 57 1.078848 AGAGGCACATGTTCGCTCC 60.079 57.895 7.96 0.00 0.00 4.70
57 58 1.078848 GAGGCACATGTTCGCTCCT 60.079 57.895 7.96 4.49 0.00 3.69
58 59 1.078848 AGGCACATGTTCGCTCCTC 60.079 57.895 7.96 0.00 0.00 3.71
59 60 1.078848 GGCACATGTTCGCTCCTCT 60.079 57.895 7.96 0.00 0.00 3.69
60 61 0.674895 GGCACATGTTCGCTCCTCTT 60.675 55.000 7.96 0.00 0.00 2.85
61 62 1.160137 GCACATGTTCGCTCCTCTTT 58.840 50.000 0.00 0.00 0.00 2.52
62 63 1.129437 GCACATGTTCGCTCCTCTTTC 59.871 52.381 0.00 0.00 0.00 2.62
63 64 1.391485 CACATGTTCGCTCCTCTTTCG 59.609 52.381 0.00 0.00 0.00 3.46
64 65 1.000955 ACATGTTCGCTCCTCTTTCGT 59.999 47.619 0.00 0.00 0.00 3.85
65 66 1.656095 CATGTTCGCTCCTCTTTCGTC 59.344 52.381 0.00 0.00 0.00 4.20
66 67 0.386858 TGTTCGCTCCTCTTTCGTCG 60.387 55.000 0.00 0.00 0.00 5.12
67 68 0.109873 GTTCGCTCCTCTTTCGTCGA 60.110 55.000 0.00 0.00 0.00 4.20
68 69 0.594602 TTCGCTCCTCTTTCGTCGAA 59.405 50.000 2.90 2.90 34.22 3.71
69 70 0.109873 TCGCTCCTCTTTCGTCGAAC 60.110 55.000 7.29 0.00 0.00 3.95
70 71 0.386858 CGCTCCTCTTTCGTCGAACA 60.387 55.000 7.29 0.00 0.00 3.18
71 72 1.732732 CGCTCCTCTTTCGTCGAACAT 60.733 52.381 7.29 0.00 0.00 2.71
72 73 1.656095 GCTCCTCTTTCGTCGAACATG 59.344 52.381 7.29 1.52 0.00 3.21
73 74 2.927014 GCTCCTCTTTCGTCGAACATGT 60.927 50.000 7.29 0.00 0.00 3.21
74 75 2.917971 CTCCTCTTTCGTCGAACATGTC 59.082 50.000 7.29 0.00 0.00 3.06
75 76 2.295070 TCCTCTTTCGTCGAACATGTCA 59.705 45.455 7.29 0.00 0.00 3.58
76 77 3.056821 TCCTCTTTCGTCGAACATGTCAT 60.057 43.478 7.29 0.00 0.00 3.06
77 78 3.679980 CCTCTTTCGTCGAACATGTCATT 59.320 43.478 7.29 0.00 0.00 2.57
78 79 4.152402 CCTCTTTCGTCGAACATGTCATTT 59.848 41.667 7.29 0.00 0.00 2.32
79 80 5.264060 TCTTTCGTCGAACATGTCATTTC 57.736 39.130 7.29 0.00 0.00 2.17
80 81 4.988540 TCTTTCGTCGAACATGTCATTTCT 59.011 37.500 7.29 0.00 0.00 2.52
81 82 5.465390 TCTTTCGTCGAACATGTCATTTCTT 59.535 36.000 7.29 0.00 0.00 2.52
82 83 5.666969 TTCGTCGAACATGTCATTTCTTT 57.333 34.783 2.90 0.00 0.00 2.52
83 84 5.264060 TCGTCGAACATGTCATTTCTTTC 57.736 39.130 0.00 0.00 0.00 2.62
84 85 4.151689 TCGTCGAACATGTCATTTCTTTCC 59.848 41.667 0.00 0.00 0.00 3.13
85 86 4.394795 GTCGAACATGTCATTTCTTTCCG 58.605 43.478 0.00 0.00 0.00 4.30
86 87 3.435327 TCGAACATGTCATTTCTTTCCGG 59.565 43.478 0.00 0.00 0.00 5.14
87 88 3.501950 GAACATGTCATTTCTTTCCGGC 58.498 45.455 0.00 0.00 0.00 6.13
88 89 1.468520 ACATGTCATTTCTTTCCGGCG 59.531 47.619 0.00 0.00 0.00 6.46
89 90 1.737236 CATGTCATTTCTTTCCGGCGA 59.263 47.619 9.30 0.00 0.00 5.54
90 91 1.153353 TGTCATTTCTTTCCGGCGAC 58.847 50.000 9.30 0.00 0.00 5.19
91 92 1.153353 GTCATTTCTTTCCGGCGACA 58.847 50.000 9.30 0.00 0.00 4.35
92 93 1.128692 GTCATTTCTTTCCGGCGACAG 59.871 52.381 9.30 0.30 0.00 3.51
93 94 1.156736 CATTTCTTTCCGGCGACAGT 58.843 50.000 9.30 0.00 0.00 3.55
94 95 1.135972 CATTTCTTTCCGGCGACAGTG 60.136 52.381 9.30 0.00 0.00 3.66
95 96 0.105224 TTTCTTTCCGGCGACAGTGA 59.895 50.000 9.30 0.00 0.00 3.41
96 97 0.320374 TTCTTTCCGGCGACAGTGAT 59.680 50.000 9.30 0.00 0.00 3.06
97 98 0.389817 TCTTTCCGGCGACAGTGATG 60.390 55.000 9.30 0.00 0.00 3.07
98 99 0.670546 CTTTCCGGCGACAGTGATGT 60.671 55.000 9.30 0.00 0.00 3.06
99 100 0.669318 TTTCCGGCGACAGTGATGTC 60.669 55.000 9.30 0.00 35.59 3.06
100 101 2.501223 TTCCGGCGACAGTGATGTCC 62.501 60.000 9.30 0.00 35.52 4.02
101 102 2.573869 CGGCGACAGTGATGTCCT 59.426 61.111 0.00 0.00 35.52 3.85
102 103 1.079819 CGGCGACAGTGATGTCCTT 60.080 57.895 0.00 0.00 35.52 3.36
103 104 0.172578 CGGCGACAGTGATGTCCTTA 59.827 55.000 0.00 0.00 35.52 2.69
104 105 1.641577 GGCGACAGTGATGTCCTTAC 58.358 55.000 0.00 0.00 35.52 2.34
105 106 1.067142 GGCGACAGTGATGTCCTTACA 60.067 52.381 0.00 0.00 40.69 2.41
107 108 2.604914 GCGACAGTGATGTCCTTACATG 59.395 50.000 0.00 0.00 46.49 3.21
108 109 2.604914 CGACAGTGATGTCCTTACATGC 59.395 50.000 0.00 0.00 46.49 4.06
109 110 3.677148 CGACAGTGATGTCCTTACATGCT 60.677 47.826 0.00 0.00 46.49 3.79
110 111 4.256920 GACAGTGATGTCCTTACATGCTT 58.743 43.478 0.00 0.00 46.49 3.91
111 112 4.005650 ACAGTGATGTCCTTACATGCTTG 58.994 43.478 0.00 0.00 46.49 4.01
112 113 4.005650 CAGTGATGTCCTTACATGCTTGT 58.994 43.478 10.40 10.40 46.49 3.16
113 114 4.005650 AGTGATGTCCTTACATGCTTGTG 58.994 43.478 15.08 0.00 46.49 3.33
114 115 3.127548 GTGATGTCCTTACATGCTTGTGG 59.872 47.826 15.08 8.85 46.49 4.17
115 116 2.949177 TGTCCTTACATGCTTGTGGT 57.051 45.000 15.08 0.00 36.53 4.16
116 117 2.503331 TGTCCTTACATGCTTGTGGTG 58.497 47.619 15.08 5.27 36.53 4.17
117 118 1.812571 GTCCTTACATGCTTGTGGTGG 59.187 52.381 15.08 12.98 36.53 4.61
118 119 1.423541 TCCTTACATGCTTGTGGTGGT 59.576 47.619 15.08 0.00 36.53 4.16
119 120 1.812571 CCTTACATGCTTGTGGTGGTC 59.187 52.381 15.08 0.00 36.53 4.02
120 121 2.553028 CCTTACATGCTTGTGGTGGTCT 60.553 50.000 15.08 0.00 36.53 3.85
121 122 2.183478 TACATGCTTGTGGTGGTCTG 57.817 50.000 15.08 0.00 36.53 3.51
122 123 0.183492 ACATGCTTGTGGTGGTCTGT 59.817 50.000 4.14 0.00 33.85 3.41
123 124 1.321474 CATGCTTGTGGTGGTCTGTT 58.679 50.000 0.00 0.00 0.00 3.16
124 125 1.682854 CATGCTTGTGGTGGTCTGTTT 59.317 47.619 0.00 0.00 0.00 2.83
125 126 1.102154 TGCTTGTGGTGGTCTGTTTG 58.898 50.000 0.00 0.00 0.00 2.93
126 127 0.385390 GCTTGTGGTGGTCTGTTTGG 59.615 55.000 0.00 0.00 0.00 3.28
127 128 0.385390 CTTGTGGTGGTCTGTTTGGC 59.615 55.000 0.00 0.00 0.00 4.52
128 129 1.040339 TTGTGGTGGTCTGTTTGGCC 61.040 55.000 0.00 0.00 41.87 5.36
129 130 1.152756 GTGGTGGTCTGTTTGGCCT 60.153 57.895 3.32 0.00 42.07 5.19
130 131 0.755327 GTGGTGGTCTGTTTGGCCTT 60.755 55.000 3.32 0.00 42.07 4.35
131 132 0.032615 TGGTGGTCTGTTTGGCCTTT 60.033 50.000 3.32 0.00 42.07 3.11
132 133 1.215673 TGGTGGTCTGTTTGGCCTTTA 59.784 47.619 3.32 0.00 42.07 1.85
133 134 1.886542 GGTGGTCTGTTTGGCCTTTAG 59.113 52.381 3.32 0.00 42.07 1.85
134 135 1.886542 GTGGTCTGTTTGGCCTTTAGG 59.113 52.381 3.32 0.00 42.07 2.69
148 149 3.606687 CCTTTAGGCGTTTCCTGTATGT 58.393 45.455 0.00 0.00 46.98 2.29
149 150 3.621715 CCTTTAGGCGTTTCCTGTATGTC 59.378 47.826 0.00 0.00 46.98 3.06
150 151 2.973694 TAGGCGTTTCCTGTATGTCC 57.026 50.000 0.00 0.00 46.98 4.02
151 152 1.276622 AGGCGTTTCCTGTATGTCCT 58.723 50.000 0.00 0.00 45.54 3.85
152 153 1.066143 AGGCGTTTCCTGTATGTCCTG 60.066 52.381 0.00 0.00 45.54 3.86
153 154 1.338769 GGCGTTTCCTGTATGTCCTGT 60.339 52.381 0.00 0.00 0.00 4.00
154 155 2.423577 GCGTTTCCTGTATGTCCTGTT 58.576 47.619 0.00 0.00 0.00 3.16
155 156 2.159627 GCGTTTCCTGTATGTCCTGTTG 59.840 50.000 0.00 0.00 0.00 3.33
156 157 3.399330 CGTTTCCTGTATGTCCTGTTGT 58.601 45.455 0.00 0.00 0.00 3.32
157 158 3.186409 CGTTTCCTGTATGTCCTGTTGTG 59.814 47.826 0.00 0.00 0.00 3.33
158 159 2.472695 TCCTGTATGTCCTGTTGTGC 57.527 50.000 0.00 0.00 0.00 4.57
159 160 1.977854 TCCTGTATGTCCTGTTGTGCT 59.022 47.619 0.00 0.00 0.00 4.40
160 161 2.028112 TCCTGTATGTCCTGTTGTGCTC 60.028 50.000 0.00 0.00 0.00 4.26
161 162 1.995484 CTGTATGTCCTGTTGTGCTCG 59.005 52.381 0.00 0.00 0.00 5.03
162 163 1.616374 TGTATGTCCTGTTGTGCTCGA 59.384 47.619 0.00 0.00 0.00 4.04
163 164 2.263077 GTATGTCCTGTTGTGCTCGAG 58.737 52.381 8.45 8.45 0.00 4.04
164 165 0.671781 ATGTCCTGTTGTGCTCGAGC 60.672 55.000 30.42 30.42 42.50 5.03
165 166 2.029844 GTCCTGTTGTGCTCGAGCC 61.030 63.158 33.23 23.92 41.18 4.70
166 167 2.210013 TCCTGTTGTGCTCGAGCCT 61.210 57.895 33.23 0.00 41.18 4.58
167 168 0.898326 TCCTGTTGTGCTCGAGCCTA 60.898 55.000 33.23 19.78 41.18 3.93
168 169 0.459237 CCTGTTGTGCTCGAGCCTAG 60.459 60.000 33.23 21.59 41.18 3.02
169 170 0.459237 CTGTTGTGCTCGAGCCTAGG 60.459 60.000 33.23 14.99 41.18 3.02
170 171 1.185618 TGTTGTGCTCGAGCCTAGGT 61.186 55.000 33.23 0.00 41.18 3.08
171 172 0.737715 GTTGTGCTCGAGCCTAGGTG 60.738 60.000 33.23 0.80 41.18 4.00
172 173 1.185618 TTGTGCTCGAGCCTAGGTGT 61.186 55.000 33.23 0.00 41.18 4.16
173 174 1.153745 GTGCTCGAGCCTAGGTGTG 60.154 63.158 33.23 3.32 41.18 3.82
174 175 2.351244 TGCTCGAGCCTAGGTGTGG 61.351 63.158 33.23 0.00 41.18 4.17
175 176 2.352032 GCTCGAGCCTAGGTGTGGT 61.352 63.158 27.22 0.00 34.31 4.16
176 177 1.513158 CTCGAGCCTAGGTGTGGTG 59.487 63.158 11.31 0.00 0.00 4.17
177 178 1.228769 TCGAGCCTAGGTGTGGTGT 60.229 57.895 11.31 0.00 0.00 4.16
178 179 1.079819 CGAGCCTAGGTGTGGTGTG 60.080 63.158 11.31 0.00 0.00 3.82
179 180 1.376037 GAGCCTAGGTGTGGTGTGC 60.376 63.158 11.31 0.00 0.00 4.57
180 181 1.831652 GAGCCTAGGTGTGGTGTGCT 61.832 60.000 11.31 0.00 0.00 4.40
181 182 1.376037 GCCTAGGTGTGGTGTGCTC 60.376 63.158 11.31 0.00 0.00 4.26
182 183 1.831652 GCCTAGGTGTGGTGTGCTCT 61.832 60.000 11.31 0.00 0.00 4.09
183 184 0.687354 CCTAGGTGTGGTGTGCTCTT 59.313 55.000 0.00 0.00 0.00 2.85
184 185 1.072331 CCTAGGTGTGGTGTGCTCTTT 59.928 52.381 0.00 0.00 0.00 2.52
185 186 2.146342 CTAGGTGTGGTGTGCTCTTTG 58.854 52.381 0.00 0.00 0.00 2.77
186 187 0.255890 AGGTGTGGTGTGCTCTTTGT 59.744 50.000 0.00 0.00 0.00 2.83
187 188 1.488812 AGGTGTGGTGTGCTCTTTGTA 59.511 47.619 0.00 0.00 0.00 2.41
188 189 2.092646 AGGTGTGGTGTGCTCTTTGTAA 60.093 45.455 0.00 0.00 0.00 2.41
189 190 2.685897 GGTGTGGTGTGCTCTTTGTAAA 59.314 45.455 0.00 0.00 0.00 2.01
190 191 3.243068 GGTGTGGTGTGCTCTTTGTAAAG 60.243 47.826 0.00 0.00 37.36 1.85
191 192 2.948979 TGTGGTGTGCTCTTTGTAAAGG 59.051 45.455 4.67 0.00 36.67 3.11
192 193 2.949644 GTGGTGTGCTCTTTGTAAAGGT 59.050 45.455 4.67 0.00 36.67 3.50
193 194 3.380320 GTGGTGTGCTCTTTGTAAAGGTT 59.620 43.478 4.67 0.00 36.67 3.50
194 195 4.020543 TGGTGTGCTCTTTGTAAAGGTTT 58.979 39.130 4.67 0.00 36.67 3.27
195 196 4.464597 TGGTGTGCTCTTTGTAAAGGTTTT 59.535 37.500 4.67 0.00 36.67 2.43
196 197 5.652891 TGGTGTGCTCTTTGTAAAGGTTTTA 59.347 36.000 4.67 0.00 36.67 1.52
197 198 6.183360 TGGTGTGCTCTTTGTAAAGGTTTTAG 60.183 38.462 4.67 0.00 36.67 1.85
198 199 5.685954 GTGTGCTCTTTGTAAAGGTTTTAGC 59.314 40.000 4.67 6.35 36.67 3.09
199 200 5.592688 TGTGCTCTTTGTAAAGGTTTTAGCT 59.407 36.000 12.95 0.00 34.10 3.32
200 201 6.143496 GTGCTCTTTGTAAAGGTTTTAGCTC 58.857 40.000 12.95 8.10 34.10 4.09
201 202 5.049680 TGCTCTTTGTAAAGGTTTTAGCTCG 60.050 40.000 12.95 0.00 34.10 5.03
202 203 5.178809 GCTCTTTGTAAAGGTTTTAGCTCGA 59.821 40.000 0.00 0.00 36.67 4.04
203 204 6.128254 GCTCTTTGTAAAGGTTTTAGCTCGAT 60.128 38.462 0.00 0.00 36.67 3.59
204 205 7.573283 GCTCTTTGTAAAGGTTTTAGCTCGATT 60.573 37.037 0.00 0.00 36.67 3.34
205 206 8.161699 TCTTTGTAAAGGTTTTAGCTCGATTT 57.838 30.769 0.00 0.00 36.67 2.17
206 207 8.287503 TCTTTGTAAAGGTTTTAGCTCGATTTC 58.712 33.333 0.00 0.00 36.67 2.17
207 208 7.739498 TTGTAAAGGTTTTAGCTCGATTTCT 57.261 32.000 0.00 0.00 0.00 2.52
208 209 7.129109 TGTAAAGGTTTTAGCTCGATTTCTG 57.871 36.000 0.00 0.00 0.00 3.02
209 210 6.708949 TGTAAAGGTTTTAGCTCGATTTCTGT 59.291 34.615 0.00 0.00 0.00 3.41
210 211 6.635030 AAAGGTTTTAGCTCGATTTCTGTT 57.365 33.333 0.00 0.00 0.00 3.16
211 212 7.739498 AAAGGTTTTAGCTCGATTTCTGTTA 57.261 32.000 0.00 0.00 0.00 2.41
212 213 7.739498 AAGGTTTTAGCTCGATTTCTGTTAA 57.261 32.000 0.00 0.00 0.00 2.01
213 214 7.923414 AGGTTTTAGCTCGATTTCTGTTAAT 57.077 32.000 0.00 0.00 0.00 1.40
214 215 8.336801 AGGTTTTAGCTCGATTTCTGTTAATT 57.663 30.769 0.00 0.00 0.00 1.40
215 216 9.444600 AGGTTTTAGCTCGATTTCTGTTAATTA 57.555 29.630 0.00 0.00 0.00 1.40
219 220 8.780846 TTAGCTCGATTTCTGTTAATTAACCA 57.219 30.769 22.47 11.58 35.37 3.67
220 221 7.681939 AGCTCGATTTCTGTTAATTAACCAA 57.318 32.000 22.47 13.78 35.37 3.67
221 222 8.106247 AGCTCGATTTCTGTTAATTAACCAAA 57.894 30.769 22.47 19.96 35.37 3.28
222 223 8.021396 AGCTCGATTTCTGTTAATTAACCAAAC 58.979 33.333 22.47 11.89 35.37 2.93
223 224 7.806014 GCTCGATTTCTGTTAATTAACCAAACA 59.194 33.333 22.47 8.02 35.37 2.83
224 225 9.840427 CTCGATTTCTGTTAATTAACCAAACAT 57.160 29.630 22.47 10.25 35.37 2.71
225 226 9.834628 TCGATTTCTGTTAATTAACCAAACATC 57.165 29.630 22.47 15.84 35.37 3.06
226 227 8.785101 CGATTTCTGTTAATTAACCAAACATCG 58.215 33.333 22.47 21.30 35.37 3.84
227 228 8.980143 ATTTCTGTTAATTAACCAAACATCGG 57.020 30.769 22.47 3.81 35.37 4.18
228 229 7.513371 TTCTGTTAATTAACCAAACATCGGT 57.487 32.000 22.47 0.00 38.85 4.69
230 231 7.942990 TCTGTTAATTAACCAAACATCGGTTT 58.057 30.769 22.47 0.00 44.46 3.27
231 232 8.077386 TCTGTTAATTAACCAAACATCGGTTTC 58.923 33.333 22.47 0.00 44.46 2.78
232 233 7.942990 TGTTAATTAACCAAACATCGGTTTCT 58.057 30.769 22.47 0.00 44.46 2.52
233 234 8.414778 TGTTAATTAACCAAACATCGGTTTCTT 58.585 29.630 22.47 0.00 44.46 2.52
234 235 9.251792 GTTAATTAACCAAACATCGGTTTCTTT 57.748 29.630 16.14 0.00 44.46 2.52
236 237 8.806177 AATTAACCAAACATCGGTTTCTTTAC 57.194 30.769 0.00 0.00 44.46 2.01
237 238 4.841443 ACCAAACATCGGTTTCTTTACC 57.159 40.909 0.00 0.00 45.18 2.85
249 250 6.738832 GGTTTCTTTACCGCTTCTTCTAAT 57.261 37.500 0.00 0.00 0.00 1.73
250 251 6.773080 GGTTTCTTTACCGCTTCTTCTAATC 58.227 40.000 0.00 0.00 0.00 1.75
251 252 6.594547 GGTTTCTTTACCGCTTCTTCTAATCT 59.405 38.462 0.00 0.00 0.00 2.40
252 253 7.763071 GGTTTCTTTACCGCTTCTTCTAATCTA 59.237 37.037 0.00 0.00 0.00 1.98
253 254 9.315525 GTTTCTTTACCGCTTCTTCTAATCTAT 57.684 33.333 0.00 0.00 0.00 1.98
254 255 9.530633 TTTCTTTACCGCTTCTTCTAATCTATC 57.469 33.333 0.00 0.00 0.00 2.08
255 256 7.361127 TCTTTACCGCTTCTTCTAATCTATCG 58.639 38.462 0.00 0.00 0.00 2.92
256 257 6.872628 TTACCGCTTCTTCTAATCTATCGA 57.127 37.500 0.00 0.00 0.00 3.59
257 258 5.365403 ACCGCTTCTTCTAATCTATCGAG 57.635 43.478 0.00 0.00 0.00 4.04
258 259 5.064558 ACCGCTTCTTCTAATCTATCGAGA 58.935 41.667 0.00 0.00 35.71 4.04
259 260 5.708230 ACCGCTTCTTCTAATCTATCGAGAT 59.292 40.000 0.00 0.00 44.79 2.75
260 261 6.879993 ACCGCTTCTTCTAATCTATCGAGATA 59.120 38.462 0.00 0.00 41.87 1.98
261 262 7.065324 ACCGCTTCTTCTAATCTATCGAGATAG 59.935 40.741 12.61 12.61 41.87 2.08
262 263 7.406553 CGCTTCTTCTAATCTATCGAGATAGG 58.593 42.308 17.21 4.60 41.87 2.57
263 264 7.193595 GCTTCTTCTAATCTATCGAGATAGGC 58.806 42.308 17.21 7.33 41.87 3.93
264 265 7.148154 GCTTCTTCTAATCTATCGAGATAGGCA 60.148 40.741 17.21 2.91 41.87 4.75
265 266 7.857734 TCTTCTAATCTATCGAGATAGGCAG 57.142 40.000 17.21 12.41 41.87 4.85
266 267 6.317642 TCTTCTAATCTATCGAGATAGGCAGC 59.682 42.308 17.21 0.00 41.87 5.25
267 268 5.750524 TCTAATCTATCGAGATAGGCAGCT 58.249 41.667 17.21 0.00 41.87 4.24
268 269 4.981806 AATCTATCGAGATAGGCAGCTC 57.018 45.455 17.21 0.00 41.87 4.09
269 270 3.712016 TCTATCGAGATAGGCAGCTCT 57.288 47.619 17.21 0.00 40.81 4.09
270 271 3.605634 TCTATCGAGATAGGCAGCTCTC 58.394 50.000 17.21 0.00 40.81 3.20
271 272 1.544724 ATCGAGATAGGCAGCTCTCC 58.455 55.000 4.90 0.00 34.94 3.71
272 273 0.476338 TCGAGATAGGCAGCTCTCCT 59.524 55.000 8.91 8.91 34.94 3.69
273 274 0.597568 CGAGATAGGCAGCTCTCCTG 59.402 60.000 13.06 0.00 44.67 3.86
282 283 2.593346 CAGCTCTCCTGCGTCTATTT 57.407 50.000 0.00 0.00 38.13 1.40
283 284 2.468831 CAGCTCTCCTGCGTCTATTTC 58.531 52.381 0.00 0.00 38.13 2.17
284 285 2.103373 AGCTCTCCTGCGTCTATTTCA 58.897 47.619 0.00 0.00 38.13 2.69
285 286 2.497675 AGCTCTCCTGCGTCTATTTCAA 59.502 45.455 0.00 0.00 38.13 2.69
286 287 3.055819 AGCTCTCCTGCGTCTATTTCAAA 60.056 43.478 0.00 0.00 38.13 2.69
287 288 3.684788 GCTCTCCTGCGTCTATTTCAAAA 59.315 43.478 0.00 0.00 0.00 2.44
288 289 4.154195 GCTCTCCTGCGTCTATTTCAAAAA 59.846 41.667 0.00 0.00 0.00 1.94
321 322 7.921786 TCGTTGAAAATCCTATTCTGACATT 57.078 32.000 0.00 0.00 0.00 2.71
348 349 0.618458 TCCCGTTCTCCCTTTCATGG 59.382 55.000 0.00 0.00 0.00 3.66
366 367 1.639298 GGATTGCAAGCTCTCGCGTT 61.639 55.000 15.27 0.00 42.32 4.84
385 386 4.799949 GCGTTTCCAATGTGTATCGTAGTA 59.200 41.667 0.00 0.00 0.00 1.82
392 393 8.009622 TCCAATGTGTATCGTAGTATTTGGTA 57.990 34.615 0.00 0.00 0.00 3.25
471 473 5.118664 CACCAACAACTACGATACACTTGAG 59.881 44.000 0.00 0.00 0.00 3.02
477 479 6.128227 ACAACTACGATACACTTGAGTCTCTC 60.128 42.308 0.65 0.00 0.00 3.20
480 482 7.273712 ACTACGATACACTTGAGTCTCTCATA 58.726 38.462 0.65 0.00 40.39 2.15
544 578 4.934356 TGTAATTTCCTTTGCCTGGAGAT 58.066 39.130 0.00 0.00 34.76 2.75
553 587 5.418840 TCCTTTGCCTGGAGATGTAAAATTC 59.581 40.000 0.00 0.00 0.00 2.17
1608 1687 1.101049 AGGTGTGCGTGGGAAAGTTG 61.101 55.000 0.00 0.00 0.00 3.16
1701 1788 1.272313 TGGGTAGGTAGCTTGTCGAGT 60.272 52.381 0.00 0.00 0.00 4.18
1702 1789 2.025981 TGGGTAGGTAGCTTGTCGAGTA 60.026 50.000 0.00 0.00 0.00 2.59
1703 1790 2.617774 GGGTAGGTAGCTTGTCGAGTAG 59.382 54.545 0.00 0.00 0.00 2.57
1704 1791 3.277715 GGTAGGTAGCTTGTCGAGTAGT 58.722 50.000 0.00 0.00 0.00 2.73
1705 1792 4.446371 GGTAGGTAGCTTGTCGAGTAGTA 58.554 47.826 0.00 0.00 0.00 1.82
1706 1793 4.272261 GGTAGGTAGCTTGTCGAGTAGTAC 59.728 50.000 0.00 0.00 0.00 2.73
1773 1892 2.981898 AGTGCGGGTTTATCTTGTACC 58.018 47.619 0.00 0.00 0.00 3.34
1816 1935 1.440518 CGTGTCGGTGTGAGTCTCG 60.441 63.158 0.00 0.00 0.00 4.04
1828 1947 4.093998 GTGTGAGTCTCGGTTTACTATCGA 59.906 45.833 0.00 0.00 0.00 3.59
1877 2065 9.856488 ATCATCATATACTCCGTATGTTGTAAC 57.144 33.333 0.00 0.00 33.81 2.50
1878 2066 8.852135 TCATCATATACTCCGTATGTTGTAACA 58.148 33.333 0.00 0.00 44.06 2.41
1894 2082 8.925161 TGTTGTAACAGTACTACGTTTACTTT 57.075 30.769 4.13 2.32 38.38 2.66
1895 2083 9.364989 TGTTGTAACAGTACTACGTTTACTTTT 57.635 29.630 4.13 3.61 38.38 2.27
1918 2106 7.636259 TTTTCTTTTTGCGATGAATTGTAGG 57.364 32.000 0.00 0.00 0.00 3.18
1919 2107 6.567687 TTCTTTTTGCGATGAATTGTAGGA 57.432 33.333 0.00 0.00 0.00 2.94
1942 2130 7.650104 AGGAGTACTACGTTTACTACTCGTATC 59.350 40.741 13.55 3.35 36.14 2.24
2014 2207 4.549516 GAGTACCCTCCGCGTCGC 62.550 72.222 7.29 7.29 0.00 5.19
2024 2217 3.788766 CGCGTCGCCCCTTTTCAG 61.789 66.667 12.44 0.00 0.00 3.02
2055 2248 1.604915 GAGGTCTTTCAGGGGCTCC 59.395 63.158 0.00 0.00 0.00 4.70
2102 2879 3.680786 CGGACCCGTCTGTCAGCA 61.681 66.667 0.00 0.00 36.97 4.41
2104 2881 1.663379 CGGACCCGTCTGTCAGCATA 61.663 60.000 0.00 0.00 36.97 3.14
2113 2890 3.062639 CGTCTGTCAGCATAATCGCTTTT 59.937 43.478 0.00 0.00 41.38 2.27
2114 2891 4.436050 CGTCTGTCAGCATAATCGCTTTTT 60.436 41.667 0.00 0.00 41.38 1.94
2117 2894 2.854185 GTCAGCATAATCGCTTTTTGCC 59.146 45.455 8.80 0.00 41.55 4.52
2127 2904 0.317160 GCTTTTTGCCGGGCTAGTTT 59.683 50.000 21.46 0.00 35.15 2.66
2133 2910 1.252904 TGCCGGGCTAGTTTAGTCGT 61.253 55.000 21.46 0.00 0.00 4.34
2181 2958 4.569023 CTCGCGCGTGGAGGCATA 62.569 66.667 30.98 5.69 0.00 3.14
2182 2959 4.136511 TCGCGCGTGGAGGCATAA 62.137 61.111 30.98 2.41 0.00 1.90
2186 2963 1.436195 GCGCGTGGAGGCATAAATCA 61.436 55.000 8.43 0.00 0.00 2.57
2187 2964 1.229428 CGCGTGGAGGCATAAATCAT 58.771 50.000 0.00 0.00 0.00 2.45
2196 2973 1.580942 CATAAATCATGCCCCCGCG 59.419 57.895 0.00 0.00 38.08 6.46
2255 3043 1.202964 TCGTCTCTAGTTGGGTGGTCA 60.203 52.381 0.00 0.00 0.00 4.02
2271 3059 1.837051 TCAGACTCACGGGCCTTGT 60.837 57.895 10.10 0.00 0.00 3.16
2276 3064 2.203280 TCACGGGCCTTGTGTTGG 60.203 61.111 22.39 3.71 38.48 3.77
2337 3125 4.388499 GTCTTCGCCCCTCGCCAA 62.388 66.667 0.00 0.00 38.27 4.52
2350 3138 2.954611 GCCAAGCTGGTTCGTTCC 59.045 61.111 0.00 0.00 40.46 3.62
2351 3139 2.626780 GCCAAGCTGGTTCGTTCCC 61.627 63.158 0.00 0.00 40.46 3.97
2371 3159 0.178068 GATAGGCGGGTCATGTGTGT 59.822 55.000 0.00 0.00 0.00 3.72
2372 3160 0.618458 ATAGGCGGGTCATGTGTGTT 59.382 50.000 0.00 0.00 0.00 3.32
2374 3162 1.896660 GGCGGGTCATGTGTGTTGT 60.897 57.895 0.00 0.00 0.00 3.32
2389 3177 1.412710 TGTTGTCCCTGACACTGACTC 59.587 52.381 0.00 0.00 42.60 3.36
2392 3180 1.530655 TCCCTGACACTGACTCGCA 60.531 57.895 0.00 0.00 0.00 5.10
2421 3209 0.250901 CCTCTCTGTTGGGGTGGTTG 60.251 60.000 0.00 0.00 0.00 3.77
2426 3214 2.197324 GTTGGGGTGGTTGGCTCA 59.803 61.111 0.00 0.00 0.00 4.26
2468 3256 2.887568 GAGTCGAGCATGCCCGTG 60.888 66.667 21.40 5.64 0.00 4.94
2469 3257 3.649277 GAGTCGAGCATGCCCGTGT 62.649 63.158 21.40 9.73 0.00 4.49
2470 3258 2.183300 GTCGAGCATGCCCGTGTA 59.817 61.111 21.40 0.00 0.00 2.90
2480 3268 3.069946 CCCGTGTACCCGGCTGTA 61.070 66.667 11.70 0.00 46.71 2.74
2483 3271 1.514087 CGTGTACCCGGCTGTATGT 59.486 57.895 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.401766 CCAACCTGACTCGCATGGC 61.402 63.158 0.00 0.00 0.00 4.40
2 3 1.746615 CCCAACCTGACTCGCATGG 60.747 63.158 0.00 0.00 0.00 3.66
4 5 2.045926 GCCCAACCTGACTCGCAT 60.046 61.111 0.00 0.00 0.00 4.73
5 6 4.680237 CGCCCAACCTGACTCGCA 62.680 66.667 0.00 0.00 0.00 5.10
12 13 4.785453 GAGAGGGCGCCCAACCTG 62.785 72.222 45.13 0.00 37.18 4.00
26 27 1.001631 TGCCTCTCCAATCCCGAGA 59.998 57.895 0.00 0.00 35.14 4.04
27 28 1.144936 GTGCCTCTCCAATCCCGAG 59.855 63.158 0.00 0.00 0.00 4.63
28 29 0.982852 ATGTGCCTCTCCAATCCCGA 60.983 55.000 0.00 0.00 0.00 5.14
29 30 0.816825 CATGTGCCTCTCCAATCCCG 60.817 60.000 0.00 0.00 0.00 5.14
30 31 0.257039 ACATGTGCCTCTCCAATCCC 59.743 55.000 0.00 0.00 0.00 3.85
31 32 2.019984 GAACATGTGCCTCTCCAATCC 58.980 52.381 0.00 0.00 0.00 3.01
32 33 1.667724 CGAACATGTGCCTCTCCAATC 59.332 52.381 0.00 0.00 0.00 2.67
33 34 1.742761 CGAACATGTGCCTCTCCAAT 58.257 50.000 0.00 0.00 0.00 3.16
34 35 0.955428 GCGAACATGTGCCTCTCCAA 60.955 55.000 0.00 0.00 0.00 3.53
35 36 1.375908 GCGAACATGTGCCTCTCCA 60.376 57.895 0.00 0.00 0.00 3.86
36 37 1.078848 AGCGAACATGTGCCTCTCC 60.079 57.895 0.00 0.00 0.00 3.71
37 38 1.086634 GGAGCGAACATGTGCCTCTC 61.087 60.000 17.11 14.12 0.00 3.20
38 39 1.078848 GGAGCGAACATGTGCCTCT 60.079 57.895 17.11 7.42 0.00 3.69
39 40 1.078848 AGGAGCGAACATGTGCCTC 60.079 57.895 0.00 6.45 0.00 4.70
40 41 1.078848 GAGGAGCGAACATGTGCCT 60.079 57.895 0.00 1.45 0.00 4.75
41 42 0.674895 AAGAGGAGCGAACATGTGCC 60.675 55.000 0.00 0.00 0.00 5.01
42 43 1.129437 GAAAGAGGAGCGAACATGTGC 59.871 52.381 0.00 0.00 0.00 4.57
43 44 1.391485 CGAAAGAGGAGCGAACATGTG 59.609 52.381 0.00 0.00 0.00 3.21
44 45 1.000955 ACGAAAGAGGAGCGAACATGT 59.999 47.619 0.00 0.00 0.00 3.21
45 46 1.656095 GACGAAAGAGGAGCGAACATG 59.344 52.381 0.00 0.00 0.00 3.21
46 47 1.732732 CGACGAAAGAGGAGCGAACAT 60.733 52.381 0.00 0.00 0.00 2.71
47 48 0.386858 CGACGAAAGAGGAGCGAACA 60.387 55.000 0.00 0.00 0.00 3.18
48 49 0.109873 TCGACGAAAGAGGAGCGAAC 60.110 55.000 0.00 0.00 0.00 3.95
49 50 0.594602 TTCGACGAAAGAGGAGCGAA 59.405 50.000 8.05 0.00 35.69 4.70
50 51 0.109873 GTTCGACGAAAGAGGAGCGA 60.110 55.000 12.67 0.00 0.00 4.93
51 52 0.386858 TGTTCGACGAAAGAGGAGCG 60.387 55.000 12.67 0.00 0.00 5.03
52 53 1.656095 CATGTTCGACGAAAGAGGAGC 59.344 52.381 12.67 0.00 0.00 4.70
53 54 2.917971 GACATGTTCGACGAAAGAGGAG 59.082 50.000 12.67 2.41 0.00 3.69
54 55 2.295070 TGACATGTTCGACGAAAGAGGA 59.705 45.455 12.67 0.00 0.00 3.71
55 56 2.672714 TGACATGTTCGACGAAAGAGG 58.327 47.619 12.67 6.43 0.00 3.69
56 57 4.910746 AATGACATGTTCGACGAAAGAG 57.089 40.909 12.67 7.31 0.00 2.85
57 58 4.988540 AGAAATGACATGTTCGACGAAAGA 59.011 37.500 12.67 2.27 0.00 2.52
58 59 5.269459 AGAAATGACATGTTCGACGAAAG 57.731 39.130 12.67 8.03 0.00 2.62
59 60 5.666969 AAGAAATGACATGTTCGACGAAA 57.333 34.783 12.67 3.49 0.00 3.46
60 61 5.333798 GGAAAGAAATGACATGTTCGACGAA 60.334 40.000 6.10 6.10 0.00 3.85
61 62 4.151689 GGAAAGAAATGACATGTTCGACGA 59.848 41.667 0.00 0.00 0.00 4.20
62 63 4.394795 GGAAAGAAATGACATGTTCGACG 58.605 43.478 0.00 0.00 0.00 5.12
63 64 4.394795 CGGAAAGAAATGACATGTTCGAC 58.605 43.478 0.00 0.00 0.00 4.20
64 65 3.435327 CCGGAAAGAAATGACATGTTCGA 59.565 43.478 0.00 0.00 0.00 3.71
65 66 3.747193 CCGGAAAGAAATGACATGTTCG 58.253 45.455 0.00 0.00 0.00 3.95
66 67 3.501950 GCCGGAAAGAAATGACATGTTC 58.498 45.455 5.05 0.00 0.00 3.18
67 68 2.095263 CGCCGGAAAGAAATGACATGTT 60.095 45.455 5.05 0.00 0.00 2.71
68 69 1.468520 CGCCGGAAAGAAATGACATGT 59.531 47.619 5.05 0.00 0.00 3.21
69 70 1.737236 TCGCCGGAAAGAAATGACATG 59.263 47.619 5.05 0.00 0.00 3.21
70 71 1.737793 GTCGCCGGAAAGAAATGACAT 59.262 47.619 5.05 0.00 0.00 3.06
71 72 1.153353 GTCGCCGGAAAGAAATGACA 58.847 50.000 5.05 0.00 0.00 3.58
72 73 1.128692 CTGTCGCCGGAAAGAAATGAC 59.871 52.381 5.05 0.00 27.88 3.06
73 74 1.270625 ACTGTCGCCGGAAAGAAATGA 60.271 47.619 5.05 0.00 31.49 2.57
74 75 1.135972 CACTGTCGCCGGAAAGAAATG 60.136 52.381 5.05 0.00 31.49 2.32
75 76 1.156736 CACTGTCGCCGGAAAGAAAT 58.843 50.000 5.05 0.00 31.49 2.17
76 77 0.105224 TCACTGTCGCCGGAAAGAAA 59.895 50.000 5.05 0.00 31.49 2.52
77 78 0.320374 ATCACTGTCGCCGGAAAGAA 59.680 50.000 5.05 0.00 31.49 2.52
78 79 0.389817 CATCACTGTCGCCGGAAAGA 60.390 55.000 5.05 0.00 31.49 2.52
79 80 0.670546 ACATCACTGTCGCCGGAAAG 60.671 55.000 5.05 0.00 33.40 2.62
80 81 0.669318 GACATCACTGTCGCCGGAAA 60.669 55.000 5.05 0.00 42.24 3.13
81 82 1.080093 GACATCACTGTCGCCGGAA 60.080 57.895 5.05 0.00 42.24 4.30
82 83 2.571757 GACATCACTGTCGCCGGA 59.428 61.111 5.05 0.00 42.24 5.14
88 89 3.866651 AGCATGTAAGGACATCACTGTC 58.133 45.455 0.00 0.00 44.82 3.51
89 90 3.988976 AGCATGTAAGGACATCACTGT 57.011 42.857 0.00 0.00 44.82 3.55
90 91 4.005650 ACAAGCATGTAAGGACATCACTG 58.994 43.478 0.00 0.00 44.82 3.66
91 92 4.005650 CACAAGCATGTAAGGACATCACT 58.994 43.478 0.00 0.00 44.82 3.41
92 93 3.127548 CCACAAGCATGTAAGGACATCAC 59.872 47.826 0.00 0.00 44.82 3.06
93 94 3.244875 ACCACAAGCATGTAAGGACATCA 60.245 43.478 5.54 0.00 44.82 3.07
94 95 3.127548 CACCACAAGCATGTAAGGACATC 59.872 47.826 5.54 0.00 44.82 3.06
96 97 2.503331 CACCACAAGCATGTAAGGACA 58.497 47.619 5.54 0.00 37.82 4.02
97 98 1.812571 CCACCACAAGCATGTAAGGAC 59.187 52.381 5.54 0.00 37.82 3.85
98 99 1.423541 ACCACCACAAGCATGTAAGGA 59.576 47.619 11.92 0.00 37.82 3.36
99 100 1.812571 GACCACCACAAGCATGTAAGG 59.187 52.381 0.00 0.00 37.82 2.69
100 101 2.485426 CAGACCACCACAAGCATGTAAG 59.515 50.000 0.00 0.00 37.82 2.34
101 102 2.158682 ACAGACCACCACAAGCATGTAA 60.159 45.455 0.00 0.00 37.82 2.41
102 103 1.419762 ACAGACCACCACAAGCATGTA 59.580 47.619 0.00 0.00 37.82 2.29
103 104 0.183492 ACAGACCACCACAAGCATGT 59.817 50.000 0.00 0.00 41.61 3.21
104 105 1.321474 AACAGACCACCACAAGCATG 58.679 50.000 0.00 0.00 0.00 4.06
105 106 1.682854 CAAACAGACCACCACAAGCAT 59.317 47.619 0.00 0.00 0.00 3.79
106 107 1.102154 CAAACAGACCACCACAAGCA 58.898 50.000 0.00 0.00 0.00 3.91
107 108 0.385390 CCAAACAGACCACCACAAGC 59.615 55.000 0.00 0.00 0.00 4.01
108 109 0.385390 GCCAAACAGACCACCACAAG 59.615 55.000 0.00 0.00 0.00 3.16
109 110 1.040339 GGCCAAACAGACCACCACAA 61.040 55.000 0.00 0.00 0.00 3.33
110 111 1.454847 GGCCAAACAGACCACCACA 60.455 57.895 0.00 0.00 0.00 4.17
111 112 0.755327 AAGGCCAAACAGACCACCAC 60.755 55.000 5.01 0.00 0.00 4.16
112 113 0.032615 AAAGGCCAAACAGACCACCA 60.033 50.000 5.01 0.00 0.00 4.17
113 114 1.886542 CTAAAGGCCAAACAGACCACC 59.113 52.381 5.01 0.00 0.00 4.61
114 115 1.886542 CCTAAAGGCCAAACAGACCAC 59.113 52.381 5.01 0.00 0.00 4.16
115 116 2.286365 CCTAAAGGCCAAACAGACCA 57.714 50.000 5.01 0.00 0.00 4.02
133 134 1.338769 ACAGGACATACAGGAAACGCC 60.339 52.381 0.00 0.00 0.00 5.68
134 135 2.094762 ACAGGACATACAGGAAACGC 57.905 50.000 0.00 0.00 0.00 4.84
135 136 3.186409 CACAACAGGACATACAGGAAACG 59.814 47.826 0.00 0.00 0.00 3.60
136 137 3.058224 GCACAACAGGACATACAGGAAAC 60.058 47.826 0.00 0.00 0.00 2.78
137 138 3.146066 GCACAACAGGACATACAGGAAA 58.854 45.455 0.00 0.00 0.00 3.13
138 139 2.371841 AGCACAACAGGACATACAGGAA 59.628 45.455 0.00 0.00 0.00 3.36
139 140 1.977854 AGCACAACAGGACATACAGGA 59.022 47.619 0.00 0.00 0.00 3.86
140 141 2.350522 GAGCACAACAGGACATACAGG 58.649 52.381 0.00 0.00 0.00 4.00
141 142 1.995484 CGAGCACAACAGGACATACAG 59.005 52.381 0.00 0.00 0.00 2.74
142 143 1.616374 TCGAGCACAACAGGACATACA 59.384 47.619 0.00 0.00 0.00 2.29
143 144 2.263077 CTCGAGCACAACAGGACATAC 58.737 52.381 0.00 0.00 0.00 2.39
144 145 1.404181 GCTCGAGCACAACAGGACATA 60.404 52.381 31.91 0.00 41.59 2.29
145 146 0.671781 GCTCGAGCACAACAGGACAT 60.672 55.000 31.91 0.00 41.59 3.06
146 147 1.300931 GCTCGAGCACAACAGGACA 60.301 57.895 31.91 0.00 41.59 4.02
147 148 2.029844 GGCTCGAGCACAACAGGAC 61.030 63.158 36.27 13.82 44.36 3.85
148 149 0.898326 TAGGCTCGAGCACAACAGGA 60.898 55.000 36.27 10.70 44.36 3.86
149 150 0.459237 CTAGGCTCGAGCACAACAGG 60.459 60.000 36.27 15.68 44.36 4.00
150 151 0.459237 CCTAGGCTCGAGCACAACAG 60.459 60.000 36.27 23.09 44.36 3.16
151 152 1.185618 ACCTAGGCTCGAGCACAACA 61.186 55.000 36.27 16.01 44.36 3.33
152 153 0.737715 CACCTAGGCTCGAGCACAAC 60.738 60.000 36.27 20.28 44.36 3.32
153 154 1.185618 ACACCTAGGCTCGAGCACAA 61.186 55.000 36.27 20.42 44.36 3.33
154 155 1.606601 ACACCTAGGCTCGAGCACA 60.607 57.895 36.27 22.57 44.36 4.57
155 156 1.153745 CACACCTAGGCTCGAGCAC 60.154 63.158 36.27 25.30 44.36 4.40
156 157 2.351244 CCACACCTAGGCTCGAGCA 61.351 63.158 36.27 18.05 44.36 4.26
157 158 2.352032 ACCACACCTAGGCTCGAGC 61.352 63.158 29.38 29.38 41.14 5.03
158 159 1.251527 ACACCACACCTAGGCTCGAG 61.252 60.000 9.30 8.45 0.00 4.04
159 160 1.228769 ACACCACACCTAGGCTCGA 60.229 57.895 9.30 0.00 0.00 4.04
160 161 1.079819 CACACCACACCTAGGCTCG 60.080 63.158 9.30 0.00 0.00 5.03
161 162 1.376037 GCACACCACACCTAGGCTC 60.376 63.158 9.30 0.00 0.00 4.70
162 163 1.831652 GAGCACACCACACCTAGGCT 61.832 60.000 9.30 0.00 0.00 4.58
163 164 1.376037 GAGCACACCACACCTAGGC 60.376 63.158 9.30 0.00 0.00 3.93
164 165 0.687354 AAGAGCACACCACACCTAGG 59.313 55.000 7.41 7.41 0.00 3.02
165 166 2.146342 CAAAGAGCACACCACACCTAG 58.854 52.381 0.00 0.00 0.00 3.02
166 167 1.488812 ACAAAGAGCACACCACACCTA 59.511 47.619 0.00 0.00 0.00 3.08
167 168 0.255890 ACAAAGAGCACACCACACCT 59.744 50.000 0.00 0.00 0.00 4.00
168 169 1.961793 TACAAAGAGCACACCACACC 58.038 50.000 0.00 0.00 0.00 4.16
169 170 3.243068 CCTTTACAAAGAGCACACCACAC 60.243 47.826 3.25 0.00 38.28 3.82
170 171 2.948979 CCTTTACAAAGAGCACACCACA 59.051 45.455 3.25 0.00 38.28 4.17
171 172 2.949644 ACCTTTACAAAGAGCACACCAC 59.050 45.455 3.25 0.00 38.28 4.16
172 173 3.290948 ACCTTTACAAAGAGCACACCA 57.709 42.857 3.25 0.00 38.28 4.17
173 174 4.649088 AAACCTTTACAAAGAGCACACC 57.351 40.909 3.25 0.00 38.28 4.16
174 175 5.685954 GCTAAAACCTTTACAAAGAGCACAC 59.314 40.000 3.25 0.00 38.28 3.82
175 176 5.592688 AGCTAAAACCTTTACAAAGAGCACA 59.407 36.000 12.25 0.00 38.28 4.57
176 177 6.073327 AGCTAAAACCTTTACAAAGAGCAC 57.927 37.500 12.25 0.00 38.28 4.40
177 178 5.049680 CGAGCTAAAACCTTTACAAAGAGCA 60.050 40.000 12.25 0.00 38.28 4.26
178 179 5.178809 TCGAGCTAAAACCTTTACAAAGAGC 59.821 40.000 3.25 4.19 38.28 4.09
179 180 6.780706 TCGAGCTAAAACCTTTACAAAGAG 57.219 37.500 3.25 0.00 38.28 2.85
180 181 7.739498 AATCGAGCTAAAACCTTTACAAAGA 57.261 32.000 3.25 0.00 38.28 2.52
181 182 8.290325 AGAAATCGAGCTAAAACCTTTACAAAG 58.710 33.333 0.00 0.00 35.79 2.77
182 183 8.073768 CAGAAATCGAGCTAAAACCTTTACAAA 58.926 33.333 0.00 0.00 0.00 2.83
183 184 7.227910 ACAGAAATCGAGCTAAAACCTTTACAA 59.772 33.333 0.00 0.00 0.00 2.41
184 185 6.708949 ACAGAAATCGAGCTAAAACCTTTACA 59.291 34.615 0.00 0.00 0.00 2.41
185 186 7.130303 ACAGAAATCGAGCTAAAACCTTTAC 57.870 36.000 0.00 0.00 0.00 2.01
186 187 7.739498 AACAGAAATCGAGCTAAAACCTTTA 57.261 32.000 0.00 0.00 0.00 1.85
187 188 6.635030 AACAGAAATCGAGCTAAAACCTTT 57.365 33.333 0.00 0.00 0.00 3.11
188 189 7.739498 TTAACAGAAATCGAGCTAAAACCTT 57.261 32.000 0.00 0.00 0.00 3.50
189 190 7.923414 ATTAACAGAAATCGAGCTAAAACCT 57.077 32.000 0.00 0.00 0.00 3.50
193 194 9.221933 TGGTTAATTAACAGAAATCGAGCTAAA 57.778 29.630 25.59 0.00 37.92 1.85
194 195 8.780846 TGGTTAATTAACAGAAATCGAGCTAA 57.219 30.769 25.59 0.00 37.92 3.09
195 196 8.780846 TTGGTTAATTAACAGAAATCGAGCTA 57.219 30.769 25.59 3.20 37.92 3.32
196 197 7.681939 TTGGTTAATTAACAGAAATCGAGCT 57.318 32.000 25.59 0.00 37.92 4.09
197 198 7.806014 TGTTTGGTTAATTAACAGAAATCGAGC 59.194 33.333 25.59 11.88 37.92 5.03
198 199 9.840427 ATGTTTGGTTAATTAACAGAAATCGAG 57.160 29.630 25.59 0.00 37.92 4.04
199 200 9.834628 GATGTTTGGTTAATTAACAGAAATCGA 57.165 29.630 25.59 13.43 37.92 3.59
200 201 8.785101 CGATGTTTGGTTAATTAACAGAAATCG 58.215 33.333 25.59 23.52 37.92 3.34
201 202 9.072294 CCGATGTTTGGTTAATTAACAGAAATC 57.928 33.333 25.59 18.31 37.92 2.17
202 203 8.581578 ACCGATGTTTGGTTAATTAACAGAAAT 58.418 29.630 25.59 13.19 35.82 2.17
203 204 7.942990 ACCGATGTTTGGTTAATTAACAGAAA 58.057 30.769 25.59 20.05 35.82 2.52
204 205 7.513371 ACCGATGTTTGGTTAATTAACAGAA 57.487 32.000 25.59 17.32 35.82 3.02
216 217 4.841443 GGTAAAGAAACCGATGTTTGGT 57.159 40.909 0.00 0.00 44.57 3.67
226 227 6.594547 AGATTAGAAGAAGCGGTAAAGAAACC 59.405 38.462 0.00 0.00 36.08 3.27
227 228 7.598189 AGATTAGAAGAAGCGGTAAAGAAAC 57.402 36.000 0.00 0.00 0.00 2.78
228 229 9.530633 GATAGATTAGAAGAAGCGGTAAAGAAA 57.469 33.333 0.00 0.00 0.00 2.52
229 230 7.861372 CGATAGATTAGAAGAAGCGGTAAAGAA 59.139 37.037 0.00 0.00 39.76 2.52
230 231 7.228108 TCGATAGATTAGAAGAAGCGGTAAAGA 59.772 37.037 0.00 0.00 42.67 2.52
231 232 7.361127 TCGATAGATTAGAAGAAGCGGTAAAG 58.639 38.462 0.00 0.00 42.67 1.85
232 233 7.268199 TCGATAGATTAGAAGAAGCGGTAAA 57.732 36.000 0.00 0.00 42.67 2.01
233 234 6.872628 TCGATAGATTAGAAGAAGCGGTAA 57.127 37.500 0.00 0.00 42.67 2.85
246 247 9.219759 AGGAGAGCTGCCTATCTCGATAGATTA 62.220 44.444 14.02 1.64 39.55 1.75
247 248 8.502497 AGGAGAGCTGCCTATCTCGATAGATT 62.502 46.154 14.02 0.00 39.55 2.40
248 249 7.105125 AGGAGAGCTGCCTATCTCGATAGAT 62.105 48.000 14.02 0.00 44.80 1.98
249 250 3.605634 GAGAGCTGCCTATCTCGATAGA 58.394 50.000 14.02 0.00 42.55 1.98
250 251 2.682856 GGAGAGCTGCCTATCTCGATAG 59.317 54.545 10.19 6.91 42.40 2.08
251 252 2.307392 AGGAGAGCTGCCTATCTCGATA 59.693 50.000 10.19 0.00 42.40 2.92
252 253 1.075374 AGGAGAGCTGCCTATCTCGAT 59.925 52.381 10.19 1.25 42.40 3.59
253 254 0.476338 AGGAGAGCTGCCTATCTCGA 59.524 55.000 10.19 0.00 42.40 4.04
254 255 0.597568 CAGGAGAGCTGCCTATCTCG 59.402 60.000 10.19 0.00 42.40 4.04
255 256 0.318120 GCAGGAGAGCTGCCTATCTC 59.682 60.000 8.44 8.44 41.58 2.75
256 257 1.462731 CGCAGGAGAGCTGCCTATCT 61.463 60.000 4.48 0.00 44.27 1.98
257 258 1.006337 CGCAGGAGAGCTGCCTATC 60.006 63.158 4.48 0.38 44.27 2.08
258 259 1.743321 GACGCAGGAGAGCTGCCTAT 61.743 60.000 4.48 0.00 44.27 2.57
259 260 2.363018 ACGCAGGAGAGCTGCCTA 60.363 61.111 4.48 0.00 44.27 3.93
260 261 2.845638 TAGACGCAGGAGAGCTGCCT 62.846 60.000 0.00 0.00 44.27 4.75
261 262 1.743321 ATAGACGCAGGAGAGCTGCC 61.743 60.000 0.00 0.00 44.27 4.85
262 263 0.103937 AATAGACGCAGGAGAGCTGC 59.896 55.000 0.00 0.00 43.74 5.25
263 264 2.159184 TGAAATAGACGCAGGAGAGCTG 60.159 50.000 0.00 0.00 0.00 4.24
264 265 2.103373 TGAAATAGACGCAGGAGAGCT 58.897 47.619 0.00 0.00 0.00 4.09
265 266 2.586258 TGAAATAGACGCAGGAGAGC 57.414 50.000 0.00 0.00 0.00 4.09
266 267 5.862924 TTTTTGAAATAGACGCAGGAGAG 57.137 39.130 0.00 0.00 0.00 3.20
289 290 9.981114 AGAATAGGATTTTCAACGAACAATTTT 57.019 25.926 0.00 0.00 0.00 1.82
292 293 8.237267 GTCAGAATAGGATTTTCAACGAACAAT 58.763 33.333 0.00 0.00 0.00 2.71
295 296 7.129109 TGTCAGAATAGGATTTTCAACGAAC 57.871 36.000 0.00 0.00 0.00 3.95
321 322 6.723339 TGAAAGGGAGAACGGGATATTTTTA 58.277 36.000 0.00 0.00 0.00 1.52
326 327 3.073062 CCATGAAAGGGAGAACGGGATAT 59.927 47.826 0.00 0.00 43.46 1.63
327 328 2.438021 CCATGAAAGGGAGAACGGGATA 59.562 50.000 0.00 0.00 43.46 2.59
366 367 7.332557 ACCAAATACTACGATACACATTGGAA 58.667 34.615 7.63 0.00 38.47 3.53
385 386 6.531021 CCGTCTTAGGGATGTTATACCAAAT 58.469 40.000 0.00 0.00 34.86 2.32
392 393 3.069729 GTGAGCCGTCTTAGGGATGTTAT 59.930 47.826 0.00 0.00 0.00 1.89
544 578 4.460382 AGAGAGACCGTACCGAATTTTACA 59.540 41.667 0.00 0.00 0.00 2.41
553 587 1.592400 TTGGCAGAGAGACCGTACCG 61.592 60.000 0.00 0.00 0.00 4.02
858 897 1.664321 GAATCAGCTGCAGGCCAAGG 61.664 60.000 17.12 0.00 43.05 3.61
859 898 0.680280 AGAATCAGCTGCAGGCCAAG 60.680 55.000 17.12 0.00 43.05 3.61
860 899 0.679002 GAGAATCAGCTGCAGGCCAA 60.679 55.000 17.12 0.00 43.05 4.52
861 900 1.077930 GAGAATCAGCTGCAGGCCA 60.078 57.895 17.12 0.00 43.05 5.36
862 901 2.178890 CGAGAATCAGCTGCAGGCC 61.179 63.158 17.12 0.00 43.05 5.19
863 902 1.449246 ACGAGAATCAGCTGCAGGC 60.449 57.895 17.12 7.98 42.19 4.85
864 903 1.703438 GCACGAGAATCAGCTGCAGG 61.703 60.000 17.12 0.00 33.57 4.85
1219 1295 3.490759 CACCGTCATCACGCCTGC 61.491 66.667 0.00 0.00 45.29 4.85
1485 1561 4.069232 TTGCTGTCGAGCCCGAGG 62.069 66.667 0.00 0.00 46.52 4.63
1608 1687 0.393132 GGGCCAGGAAACAGCTAGAC 60.393 60.000 4.39 0.00 32.88 2.59
1738 1856 0.462759 GCACTACCATCCACAGAGGC 60.463 60.000 0.00 0.00 37.29 4.70
1773 1892 1.030457 ACGCGTGGATCTTAGTAGGG 58.970 55.000 12.93 0.00 0.00 3.53
1816 1935 8.548721 CACAATAGGAAACATCGATAGTAAACC 58.451 37.037 0.00 4.28 37.40 3.27
1893 2081 7.923344 TCCTACAATTCATCGCAAAAAGAAAAA 59.077 29.630 0.00 0.00 0.00 1.94
1894 2082 7.429633 TCCTACAATTCATCGCAAAAAGAAAA 58.570 30.769 0.00 0.00 0.00 2.29
1895 2083 6.976088 TCCTACAATTCATCGCAAAAAGAAA 58.024 32.000 0.00 0.00 0.00 2.52
1896 2084 6.206634 ACTCCTACAATTCATCGCAAAAAGAA 59.793 34.615 0.00 0.00 0.00 2.52
1897 2085 5.705441 ACTCCTACAATTCATCGCAAAAAGA 59.295 36.000 0.00 0.00 0.00 2.52
1898 2086 5.942872 ACTCCTACAATTCATCGCAAAAAG 58.057 37.500 0.00 0.00 0.00 2.27
1899 2087 5.957842 ACTCCTACAATTCATCGCAAAAA 57.042 34.783 0.00 0.00 0.00 1.94
1900 2088 6.170506 AGTACTCCTACAATTCATCGCAAAA 58.829 36.000 0.00 0.00 0.00 2.44
1901 2089 5.730550 AGTACTCCTACAATTCATCGCAAA 58.269 37.500 0.00 0.00 0.00 3.68
1902 2090 5.339008 AGTACTCCTACAATTCATCGCAA 57.661 39.130 0.00 0.00 0.00 4.85
1903 2091 5.505159 CGTAGTACTCCTACAATTCATCGCA 60.505 44.000 0.00 0.00 45.40 5.10
1904 2092 4.910456 CGTAGTACTCCTACAATTCATCGC 59.090 45.833 0.00 0.00 45.40 4.58
1905 2093 6.057627 ACGTAGTACTCCTACAATTCATCG 57.942 41.667 0.00 0.00 45.40 3.84
1906 2094 9.230932 GTAAACGTAGTACTCCTACAATTCATC 57.769 37.037 0.00 0.00 45.00 2.92
1907 2095 8.964772 AGTAAACGTAGTACTCCTACAATTCAT 58.035 33.333 0.00 0.00 45.00 2.57
1908 2096 8.340618 AGTAAACGTAGTACTCCTACAATTCA 57.659 34.615 0.00 0.00 45.00 2.57
1909 2097 9.709600 GTAGTAAACGTAGTACTCCTACAATTC 57.290 37.037 13.51 0.00 45.00 2.17
1910 2098 9.454859 AGTAGTAAACGTAGTACTCCTACAATT 57.545 33.333 13.51 0.00 45.00 2.32
2014 2207 2.115266 ACGCCACCTGAAAAGGGG 59.885 61.111 0.00 0.00 40.79 4.79
2017 2210 1.283793 CAGCACGCCACCTGAAAAG 59.716 57.895 0.00 0.00 0.00 2.27
2086 2863 0.535335 TTATGCTGACAGACGGGTCC 59.465 55.000 6.65 0.00 36.97 4.46
2093 2870 4.672542 GCAAAAAGCGATTATGCTGACAGA 60.673 41.667 14.61 0.00 46.60 3.41
2094 2871 3.545078 GCAAAAAGCGATTATGCTGACAG 59.455 43.478 14.61 0.00 46.60 3.51
2113 2890 0.108520 CGACTAAACTAGCCCGGCAA 60.109 55.000 13.15 0.00 0.00 4.52
2114 2891 1.252904 ACGACTAAACTAGCCCGGCA 61.253 55.000 13.15 0.00 32.04 5.69
2117 2894 1.200716 TGTCACGACTAAACTAGCCCG 59.799 52.381 0.00 0.00 0.00 6.13
2127 2904 3.066190 CCCCGCCTGTCACGACTA 61.066 66.667 0.00 0.00 0.00 2.59
2164 2941 4.569023 TATGCCTCCACGCGCGAG 62.569 66.667 39.36 29.72 0.00 5.03
2223 3000 4.190001 ACTAGAGACGAAGACGCTGATAA 58.810 43.478 0.00 0.00 43.96 1.75
2234 3011 1.891150 GACCACCCAACTAGAGACGAA 59.109 52.381 0.00 0.00 0.00 3.85
2255 3043 1.696097 AACACAAGGCCCGTGAGTCT 61.696 55.000 25.53 4.23 37.80 3.24
2289 3077 2.494445 CATAGCTGACCCGTCGCA 59.506 61.111 0.00 0.00 33.71 5.10
2298 3086 1.889170 CTGATAGACGGGCATAGCTGA 59.111 52.381 0.00 0.00 0.00 4.26
2300 3088 0.605589 GCTGATAGACGGGCATAGCT 59.394 55.000 0.00 0.00 0.00 3.32
2332 3120 2.556287 GAACGAACCAGCTTGGCG 59.444 61.111 0.00 2.06 42.67 5.69
2351 3139 0.875908 CACACATGACCCGCCTATCG 60.876 60.000 0.00 0.00 38.08 2.92
2367 3155 1.134521 GTCAGTGTCAGGGACAACACA 60.135 52.381 8.20 0.00 44.49 3.72
2371 3159 0.673985 CGAGTCAGTGTCAGGGACAA 59.326 55.000 0.00 0.00 44.49 3.18
2372 3160 1.806461 GCGAGTCAGTGTCAGGGACA 61.806 60.000 6.59 0.00 40.50 4.02
2374 3162 1.527433 CTGCGAGTCAGTGTCAGGGA 61.527 60.000 0.00 0.00 38.02 4.20
2401 3189 2.069165 AACCACCCCAACAGAGAGGC 62.069 60.000 0.00 0.00 0.00 4.70
2426 3214 0.745845 GAATGACACTCGGCTGGCAT 60.746 55.000 1.08 0.00 42.10 4.40
2433 3221 3.393800 ACTCAAACAGAATGACACTCGG 58.606 45.455 0.00 0.00 39.69 4.63
2434 3222 3.120286 CGACTCAAACAGAATGACACTCG 59.880 47.826 0.00 0.00 39.69 4.18
2437 3225 3.120854 GCTCGACTCAAACAGAATGACAC 60.121 47.826 0.00 0.00 39.69 3.67
2438 3226 3.059884 GCTCGACTCAAACAGAATGACA 58.940 45.455 0.00 0.00 39.69 3.58
2468 3256 1.755380 AGAGAACATACAGCCGGGTAC 59.245 52.381 5.47 0.00 0.00 3.34
2469 3257 2.029623 GAGAGAACATACAGCCGGGTA 58.970 52.381 5.47 0.00 0.00 3.69
2470 3258 0.824759 GAGAGAACATACAGCCGGGT 59.175 55.000 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.