Multiple sequence alignment - TraesCS1B01G184200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G184200 chr1B 100.000 2540 0 0 1 2540 330990469 330993008 0.000000e+00 4691
1 TraesCS1B01G184200 chr1B 89.632 1061 70 18 837 1869 331083859 331084907 0.000000e+00 1314
2 TraesCS1B01G184200 chr1B 88.953 516 45 7 1031 1546 331363527 331364030 5.970000e-176 627
3 TraesCS1B01G184200 chr1B 87.500 328 35 4 480 802 331083457 331083783 8.580000e-100 374
4 TraesCS1B01G184200 chr1B 92.095 253 15 1 3 250 550935829 550936081 4.020000e-93 351
5 TraesCS1B01G184200 chr1B 86.121 281 31 6 499 772 331363114 331363393 1.910000e-76 296
6 TraesCS1B01G184200 chr1A 92.752 1421 53 17 461 1856 300576446 300577841 0.000000e+00 2008
7 TraesCS1B01G184200 chr1A 90.430 1024 70 13 837 1846 300672466 300673475 0.000000e+00 1323
8 TraesCS1B01G184200 chr1A 89.020 510 44 2 1031 1540 300944112 300944609 2.780000e-174 621
9 TraesCS1B01G184200 chr1A 86.813 364 40 4 1897 2258 300578103 300578460 1.420000e-107 399
10 TraesCS1B01G184200 chr1A 85.251 339 33 9 480 802 300672053 300672390 1.460000e-87 333
11 TraesCS1B01G184200 chr1A 88.824 170 16 3 251 419 327186014 327185847 3.310000e-49 206
12 TraesCS1B01G184200 chr1D 91.952 1404 57 25 470 1847 247123888 247122515 0.000000e+00 1916
13 TraesCS1B01G184200 chr1D 87.175 1154 72 35 611 1720 246971082 246969961 0.000000e+00 1242
14 TraesCS1B01G184200 chr1D 88.760 516 46 6 1031 1546 246679935 246679432 2.780000e-174 621
15 TraesCS1B01G184200 chr1D 85.053 281 34 6 499 772 246680348 246680069 1.920000e-71 279
16 TraesCS1B01G184200 chr1D 88.800 125 8 3 1735 1856 246969913 246969792 5.660000e-32 148
17 TraesCS1B01G184200 chr5A 81.410 624 71 22 940 1540 491301838 491302439 3.830000e-128 468
18 TraesCS1B01G184200 chr5A 88.690 168 18 1 251 417 646990067 646989900 1.190000e-48 204
19 TraesCS1B01G184200 chr5D 79.936 623 73 22 934 1540 388109727 388110313 6.540000e-111 411
20 TraesCS1B01G184200 chr5D 92.996 257 11 3 3 253 505741772 505742027 3.990000e-98 368
21 TraesCS1B01G184200 chr5D 95.023 221 11 0 2320 2540 543671014 543670794 5.200000e-92 348
22 TraesCS1B01G184200 chr7A 93.333 255 10 3 3 251 584080977 584080724 1.110000e-98 370
23 TraesCS1B01G184200 chr7A 89.222 167 17 1 251 416 89977678 89977844 9.210000e-50 207
24 TraesCS1B01G184200 chr7A 84.314 153 20 4 1992 2142 617496214 617496064 2.040000e-31 147
25 TraesCS1B01G184200 chr3B 92.218 257 14 5 3 254 243513360 243513105 2.400000e-95 359
26 TraesCS1B01G184200 chr3B 95.495 222 10 0 2319 2540 606376055 606376276 3.110000e-94 355
27 TraesCS1B01G184200 chr3B 95.833 216 9 0 2325 2540 32447811 32447596 1.450000e-92 350
28 TraesCS1B01G184200 chr3B 91.765 255 16 1 3 252 672772112 672772366 1.450000e-92 350
29 TraesCS1B01G184200 chr3A 92.430 251 19 0 4 254 52197174 52196924 2.400000e-95 359
30 TraesCS1B01G184200 chr3A 91.765 255 16 1 3 252 17589413 17589159 1.450000e-92 350
31 TraesCS1B01G184200 chr3A 95.045 222 11 0 2319 2540 118589105 118588884 1.450000e-92 350
32 TraesCS1B01G184200 chr3A 89.222 167 16 2 251 415 66359383 66359549 9.210000e-50 207
33 TraesCS1B01G184200 chr7D 92.490 253 14 1 3 250 313644723 313644471 8.640000e-95 357
34 TraesCS1B01G184200 chr7D 89.441 161 16 1 251 410 32811921 32812081 4.280000e-48 202
35 TraesCS1B01G184200 chr5B 92.126 254 14 2 3 250 149313407 149313660 1.120000e-93 353
36 TraesCS1B01G184200 chr5B 95.023 221 11 0 2320 2540 596082430 596082210 5.200000e-92 348
37 TraesCS1B01G184200 chr4A 95.475 221 10 0 2320 2540 460894349 460894129 1.120000e-93 353
38 TraesCS1B01G184200 chr4A 89.349 169 16 2 251 418 216440566 216440399 7.120000e-51 211
39 TraesCS1B01G184200 chr2A 95.475 221 10 0 2320 2540 717204980 717204760 1.120000e-93 353
40 TraesCS1B01G184200 chr2A 95.023 221 11 0 2320 2540 497695897 497695677 5.200000e-92 348
41 TraesCS1B01G184200 chr4B 95.023 221 11 0 2320 2540 40215526 40215306 5.200000e-92 348
42 TraesCS1B01G184200 chr6A 90.361 166 15 1 251 415 109497050 109497215 1.530000e-52 217
43 TraesCS1B01G184200 chr2B 90.123 162 15 1 251 411 717045493 717045654 2.560000e-50 209
44 TraesCS1B01G184200 chr2B 83.422 187 27 4 2141 2325 131874362 131874178 1.210000e-38 171
45 TraesCS1B01G184200 chr7B 88.623 167 18 1 251 416 10968310 10968476 4.280000e-48 202
46 TraesCS1B01G184200 chr6D 81.743 241 34 3 534 765 46860954 46861193 2.580000e-45 193
47 TraesCS1B01G184200 chr6B 80.784 255 35 8 524 765 116106804 116107057 1.200000e-43 187
48 TraesCS1B01G184200 chr6B 90.667 75 7 0 1994 2068 37647499 37647425 1.610000e-17 100


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G184200 chr1B 330990469 330993008 2539 False 4691.0 4691 100.0000 1 2540 1 chr1B.!!$F1 2539
1 TraesCS1B01G184200 chr1B 331083457 331084907 1450 False 844.0 1314 88.5660 480 1869 2 chr1B.!!$F3 1389
2 TraesCS1B01G184200 chr1B 331363114 331364030 916 False 461.5 627 87.5370 499 1546 2 chr1B.!!$F4 1047
3 TraesCS1B01G184200 chr1A 300576446 300578460 2014 False 1203.5 2008 89.7825 461 2258 2 chr1A.!!$F2 1797
4 TraesCS1B01G184200 chr1A 300672053 300673475 1422 False 828.0 1323 87.8405 480 1846 2 chr1A.!!$F3 1366
5 TraesCS1B01G184200 chr1D 247122515 247123888 1373 True 1916.0 1916 91.9520 470 1847 1 chr1D.!!$R1 1377
6 TraesCS1B01G184200 chr1D 246969792 246971082 1290 True 695.0 1242 87.9875 611 1856 2 chr1D.!!$R3 1245
7 TraesCS1B01G184200 chr1D 246679432 246680348 916 True 450.0 621 86.9065 499 1546 2 chr1D.!!$R2 1047
8 TraesCS1B01G184200 chr5A 491301838 491302439 601 False 468.0 468 81.4100 940 1540 1 chr5A.!!$F1 600
9 TraesCS1B01G184200 chr5D 388109727 388110313 586 False 411.0 411 79.9360 934 1540 1 chr5D.!!$F1 606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.162294 CGACGGGCTTTTACGTGTTC 59.838 55.0 0.0 0.0 44.24 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1885 2076 0.040058 TAGAGGGGTACACCGAAGCA 59.96 55.0 8.95 0.0 41.6 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.780624 GCTCGGGCCTAGATTTTGA 57.219 52.632 9.63 0.00 0.00 2.69
26 27 1.587547 GCTCGGGCCTAGATTTTGAG 58.412 55.000 9.63 2.79 0.00 3.02
27 28 1.587547 CTCGGGCCTAGATTTTGAGC 58.412 55.000 0.84 0.00 0.00 4.26
28 29 0.180406 TCGGGCCTAGATTTTGAGCC 59.820 55.000 0.84 0.00 43.09 4.70
30 31 2.707902 GGCCTAGATTTTGAGCCCG 58.292 57.895 0.00 0.00 37.66 6.13
31 32 0.180406 GGCCTAGATTTTGAGCCCGA 59.820 55.000 0.00 0.00 37.66 5.14
32 33 1.408266 GGCCTAGATTTTGAGCCCGAA 60.408 52.381 0.00 0.00 37.66 4.30
33 34 1.943340 GCCTAGATTTTGAGCCCGAAG 59.057 52.381 0.00 0.00 0.00 3.79
67 68 2.678580 CCCGGGCCCGTCATTTTT 60.679 61.111 40.52 0.00 37.81 1.94
68 69 2.571231 CCGGGCCCGTCATTTTTG 59.429 61.111 40.52 20.46 37.81 2.44
69 70 2.126110 CGGGCCCGTCATTTTTGC 60.126 61.111 36.64 0.00 34.35 3.68
70 71 2.126110 GGGCCCGTCATTTTTGCG 60.126 61.111 5.69 0.00 0.00 4.85
71 72 2.648454 GGCCCGTCATTTTTGCGT 59.352 55.556 0.00 0.00 0.00 5.24
72 73 1.006688 GGCCCGTCATTTTTGCGTT 60.007 52.632 0.00 0.00 0.00 4.84
73 74 0.598942 GGCCCGTCATTTTTGCGTTT 60.599 50.000 0.00 0.00 0.00 3.60
74 75 1.213491 GCCCGTCATTTTTGCGTTTT 58.787 45.000 0.00 0.00 0.00 2.43
75 76 1.595328 GCCCGTCATTTTTGCGTTTTT 59.405 42.857 0.00 0.00 0.00 1.94
76 77 2.348125 GCCCGTCATTTTTGCGTTTTTC 60.348 45.455 0.00 0.00 0.00 2.29
77 78 3.120041 CCCGTCATTTTTGCGTTTTTCT 58.880 40.909 0.00 0.00 0.00 2.52
78 79 3.060607 CCCGTCATTTTTGCGTTTTTCTG 60.061 43.478 0.00 0.00 0.00 3.02
79 80 3.794028 CCGTCATTTTTGCGTTTTTCTGA 59.206 39.130 0.00 0.00 0.00 3.27
80 81 4.266502 CCGTCATTTTTGCGTTTTTCTGAA 59.733 37.500 0.00 0.00 0.00 3.02
81 82 5.414535 CGTCATTTTTGCGTTTTTCTGAAG 58.585 37.500 0.00 0.00 0.00 3.02
82 83 5.554324 CGTCATTTTTGCGTTTTTCTGAAGG 60.554 40.000 0.00 0.00 0.00 3.46
83 84 5.290885 GTCATTTTTGCGTTTTTCTGAAGGT 59.709 36.000 0.00 0.00 0.00 3.50
84 85 5.518487 TCATTTTTGCGTTTTTCTGAAGGTC 59.482 36.000 0.00 0.00 0.00 3.85
85 86 2.748461 TTGCGTTTTTCTGAAGGTCG 57.252 45.000 0.00 0.00 0.00 4.79
86 87 0.941542 TGCGTTTTTCTGAAGGTCGG 59.058 50.000 10.34 0.00 0.00 4.79
87 88 0.237498 GCGTTTTTCTGAAGGTCGGG 59.763 55.000 10.34 0.00 0.00 5.14
88 89 0.237498 CGTTTTTCTGAAGGTCGGGC 59.763 55.000 0.00 0.00 0.00 6.13
89 90 0.596577 GTTTTTCTGAAGGTCGGGCC 59.403 55.000 0.00 0.00 37.58 5.80
90 91 0.887387 TTTTTCTGAAGGTCGGGCCG 60.887 55.000 22.51 22.51 43.70 6.13
91 92 2.741486 TTTTCTGAAGGTCGGGCCGG 62.741 60.000 27.98 8.04 43.70 6.13
117 118 2.385091 CCCGACGGGCTTTTACGTG 61.385 63.158 22.37 0.00 44.24 4.49
118 119 1.665599 CCGACGGGCTTTTACGTGT 60.666 57.895 5.81 0.00 44.24 4.49
119 120 1.223417 CCGACGGGCTTTTACGTGTT 61.223 55.000 5.81 0.00 44.24 3.32
120 121 0.162294 CGACGGGCTTTTACGTGTTC 59.838 55.000 0.00 0.00 44.24 3.18
121 122 0.162294 GACGGGCTTTTACGTGTTCG 59.838 55.000 0.00 0.00 44.24 3.95
122 123 1.223417 ACGGGCTTTTACGTGTTCGG 61.223 55.000 0.00 0.00 42.39 4.30
123 124 1.871077 GGGCTTTTACGTGTTCGGG 59.129 57.895 0.00 0.00 41.85 5.14
124 125 1.208358 GGCTTTTACGTGTTCGGGC 59.792 57.895 0.00 0.00 41.85 6.13
125 126 1.208358 GCTTTTACGTGTTCGGGCC 59.792 57.895 0.00 0.00 41.85 5.80
126 127 1.494189 CTTTTACGTGTTCGGGCCG 59.506 57.895 22.51 22.51 41.85 6.13
127 128 1.903783 CTTTTACGTGTTCGGGCCGG 61.904 60.000 27.98 12.18 41.85 6.13
128 129 3.880162 TTTACGTGTTCGGGCCGGG 62.880 63.158 27.98 12.73 41.85 5.73
146 147 2.768834 GCTCGGGCCTAGAAAACAG 58.231 57.895 9.63 0.00 0.00 3.16
147 148 0.744771 GCTCGGGCCTAGAAAACAGG 60.745 60.000 9.63 0.00 36.16 4.00
154 155 1.668419 CCTAGAAAACAGGCCCGATG 58.332 55.000 0.00 0.00 0.00 3.84
155 156 1.668419 CTAGAAAACAGGCCCGATGG 58.332 55.000 0.00 0.00 0.00 3.51
202 203 1.005156 TTTTTGCATCGGGCTTGGC 60.005 52.632 0.00 0.00 45.15 4.52
203 204 1.470996 TTTTTGCATCGGGCTTGGCT 61.471 50.000 0.00 0.00 45.15 4.75
204 205 0.610509 TTTTGCATCGGGCTTGGCTA 60.611 50.000 0.00 0.00 45.15 3.93
205 206 1.031571 TTTGCATCGGGCTTGGCTAG 61.032 55.000 0.00 0.00 45.15 3.42
206 207 2.592861 GCATCGGGCTTGGCTAGG 60.593 66.667 0.00 0.00 40.25 3.02
239 240 3.925090 GGCCCGTCCCGAGGTATG 61.925 72.222 0.00 0.00 0.00 2.39
240 241 3.925090 GCCCGTCCCGAGGTATGG 61.925 72.222 0.00 0.00 0.00 2.74
241 242 3.925090 CCCGTCCCGAGGTATGGC 61.925 72.222 0.00 0.00 0.00 4.40
242 243 3.925090 CCGTCCCGAGGTATGGCC 61.925 72.222 0.00 0.00 37.58 5.36
243 244 3.151710 CGTCCCGAGGTATGGCCA 61.152 66.667 8.56 8.56 40.61 5.36
244 245 2.822399 GTCCCGAGGTATGGCCAG 59.178 66.667 13.05 0.00 40.61 4.85
245 246 2.445845 TCCCGAGGTATGGCCAGG 60.446 66.667 13.05 5.38 40.61 4.45
246 247 2.768344 CCCGAGGTATGGCCAGGT 60.768 66.667 13.05 0.00 40.61 4.00
247 248 1.458777 CCCGAGGTATGGCCAGGTA 60.459 63.158 13.05 0.00 40.61 3.08
248 249 0.836400 CCCGAGGTATGGCCAGGTAT 60.836 60.000 13.05 0.00 40.61 2.73
249 250 1.551560 CCCGAGGTATGGCCAGGTATA 60.552 57.143 13.05 0.00 40.61 1.47
250 251 1.825474 CCGAGGTATGGCCAGGTATAG 59.175 57.143 13.05 0.92 40.61 1.31
251 252 2.526432 CGAGGTATGGCCAGGTATAGT 58.474 52.381 13.05 0.00 40.61 2.12
252 253 2.897969 CGAGGTATGGCCAGGTATAGTT 59.102 50.000 13.05 0.00 40.61 2.24
253 254 3.306088 CGAGGTATGGCCAGGTATAGTTG 60.306 52.174 13.05 0.00 40.61 3.16
254 255 2.979678 AGGTATGGCCAGGTATAGTTGG 59.020 50.000 13.05 0.00 40.61 3.77
255 256 2.039879 GGTATGGCCAGGTATAGTTGGG 59.960 54.545 13.05 0.00 37.17 4.12
256 257 1.149101 ATGGCCAGGTATAGTTGGGG 58.851 55.000 13.05 0.00 34.96 4.96
257 258 0.253441 TGGCCAGGTATAGTTGGGGT 60.253 55.000 0.00 0.00 34.96 4.95
258 259 0.182775 GGCCAGGTATAGTTGGGGTG 59.817 60.000 0.00 0.00 34.96 4.61
259 260 0.182775 GCCAGGTATAGTTGGGGTGG 59.817 60.000 4.96 0.00 34.96 4.61
260 261 1.887797 CCAGGTATAGTTGGGGTGGA 58.112 55.000 0.00 0.00 0.00 4.02
261 262 2.418669 CCAGGTATAGTTGGGGTGGAT 58.581 52.381 0.00 0.00 0.00 3.41
262 263 2.106511 CCAGGTATAGTTGGGGTGGATG 59.893 54.545 0.00 0.00 0.00 3.51
263 264 2.777692 CAGGTATAGTTGGGGTGGATGT 59.222 50.000 0.00 0.00 0.00 3.06
264 265 3.202151 CAGGTATAGTTGGGGTGGATGTT 59.798 47.826 0.00 0.00 0.00 2.71
265 266 4.410883 CAGGTATAGTTGGGGTGGATGTTA 59.589 45.833 0.00 0.00 0.00 2.41
266 267 4.658901 AGGTATAGTTGGGGTGGATGTTAG 59.341 45.833 0.00 0.00 0.00 2.34
267 268 4.657039 GGTATAGTTGGGGTGGATGTTAGA 59.343 45.833 0.00 0.00 0.00 2.10
268 269 5.309806 GGTATAGTTGGGGTGGATGTTAGAT 59.690 44.000 0.00 0.00 0.00 1.98
269 270 5.994416 ATAGTTGGGGTGGATGTTAGATT 57.006 39.130 0.00 0.00 0.00 2.40
270 271 4.675063 AGTTGGGGTGGATGTTAGATTT 57.325 40.909 0.00 0.00 0.00 2.17
271 272 4.600062 AGTTGGGGTGGATGTTAGATTTC 58.400 43.478 0.00 0.00 0.00 2.17
272 273 3.662759 TGGGGTGGATGTTAGATTTCC 57.337 47.619 0.00 0.00 0.00 3.13
273 274 3.197983 TGGGGTGGATGTTAGATTTCCT 58.802 45.455 0.00 0.00 0.00 3.36
274 275 4.376223 TGGGGTGGATGTTAGATTTCCTA 58.624 43.478 0.00 0.00 0.00 2.94
275 276 4.981647 TGGGGTGGATGTTAGATTTCCTAT 59.018 41.667 0.00 0.00 0.00 2.57
276 277 6.154645 TGGGGTGGATGTTAGATTTCCTATA 58.845 40.000 0.00 0.00 0.00 1.31
277 278 6.621931 TGGGGTGGATGTTAGATTTCCTATAA 59.378 38.462 0.00 0.00 0.00 0.98
278 279 7.129660 TGGGGTGGATGTTAGATTTCCTATAAA 59.870 37.037 0.00 0.00 0.00 1.40
279 280 8.170730 GGGGTGGATGTTAGATTTCCTATAAAT 58.829 37.037 0.00 0.00 0.00 1.40
325 326 5.682234 AAAATTCCTGTGGGATCCAATTC 57.318 39.130 15.23 0.00 41.87 2.17
326 327 4.614967 AATTCCTGTGGGATCCAATTCT 57.385 40.909 15.23 0.00 41.87 2.40
327 328 5.732331 AATTCCTGTGGGATCCAATTCTA 57.268 39.130 15.23 0.00 41.87 2.10
328 329 5.937492 ATTCCTGTGGGATCCAATTCTAT 57.063 39.130 15.23 0.00 41.87 1.98
329 330 4.712051 TCCTGTGGGATCCAATTCTATG 57.288 45.455 15.23 0.00 36.57 2.23
330 331 4.306391 TCCTGTGGGATCCAATTCTATGA 58.694 43.478 15.23 0.00 36.57 2.15
331 332 4.915809 TCCTGTGGGATCCAATTCTATGAT 59.084 41.667 15.23 0.00 36.57 2.45
332 333 5.373555 TCCTGTGGGATCCAATTCTATGATT 59.626 40.000 15.23 0.00 36.57 2.57
333 334 5.709164 CCTGTGGGATCCAATTCTATGATTC 59.291 44.000 15.23 0.00 34.18 2.52
334 335 6.264771 TGTGGGATCCAATTCTATGATTCA 57.735 37.500 15.23 0.00 34.18 2.57
335 336 6.671605 TGTGGGATCCAATTCTATGATTCAA 58.328 36.000 15.23 0.00 34.18 2.69
336 337 7.124721 TGTGGGATCCAATTCTATGATTCAAA 58.875 34.615 15.23 0.00 34.18 2.69
337 338 7.785985 TGTGGGATCCAATTCTATGATTCAAAT 59.214 33.333 15.23 0.00 34.18 2.32
338 339 8.086522 GTGGGATCCAATTCTATGATTCAAATG 58.913 37.037 15.23 0.00 34.18 2.32
339 340 8.005976 TGGGATCCAATTCTATGATTCAAATGA 58.994 33.333 15.23 0.00 0.00 2.57
340 341 8.302438 GGGATCCAATTCTATGATTCAAATGAC 58.698 37.037 15.23 0.00 0.00 3.06
341 342 8.302438 GGATCCAATTCTATGATTCAAATGACC 58.698 37.037 6.95 0.00 0.00 4.02
342 343 8.771521 ATCCAATTCTATGATTCAAATGACCA 57.228 30.769 0.00 0.00 0.00 4.02
343 344 8.592529 TCCAATTCTATGATTCAAATGACCAA 57.407 30.769 0.00 0.00 0.00 3.67
344 345 9.204337 TCCAATTCTATGATTCAAATGACCAAT 57.796 29.630 0.00 0.00 0.00 3.16
420 421 7.889873 TTTGAATCAAAGGAGTCCTAAAACA 57.110 32.000 13.43 5.92 37.33 2.83
421 422 7.889873 TTGAATCAAAGGAGTCCTAAAACAA 57.110 32.000 13.43 11.39 37.33 2.83
422 423 7.889873 TGAATCAAAGGAGTCCTAAAACAAA 57.110 32.000 13.43 0.00 37.33 2.83
423 424 7.940850 TGAATCAAAGGAGTCCTAAAACAAAG 58.059 34.615 13.43 0.00 37.33 2.77
424 425 7.559897 TGAATCAAAGGAGTCCTAAAACAAAGT 59.440 33.333 13.43 0.00 37.33 2.66
425 426 7.898014 ATCAAAGGAGTCCTAAAACAAAGTT 57.102 32.000 13.43 0.00 31.13 2.66
426 427 7.712204 TCAAAGGAGTCCTAAAACAAAGTTT 57.288 32.000 13.43 0.00 31.13 2.66
427 428 7.543756 TCAAAGGAGTCCTAAAACAAAGTTTG 58.456 34.615 13.43 14.13 31.13 2.93
428 429 5.515797 AGGAGTCCTAAAACAAAGTTTGC 57.484 39.130 10.94 0.00 28.47 3.68
429 430 5.201243 AGGAGTCCTAAAACAAAGTTTGCT 58.799 37.500 10.94 0.00 28.47 3.91
430 431 6.362248 AGGAGTCCTAAAACAAAGTTTGCTA 58.638 36.000 10.94 4.33 28.47 3.49
431 432 6.486993 AGGAGTCCTAAAACAAAGTTTGCTAG 59.513 38.462 10.94 12.66 28.47 3.42
432 433 6.485648 GGAGTCCTAAAACAAAGTTTGCTAGA 59.514 38.462 15.59 1.96 0.00 2.43
433 434 7.012989 GGAGTCCTAAAACAAAGTTTGCTAGAA 59.987 37.037 15.59 0.00 0.00 2.10
434 435 8.288689 AGTCCTAAAACAAAGTTTGCTAGAAA 57.711 30.769 15.59 0.00 0.00 2.52
435 436 8.745590 AGTCCTAAAACAAAGTTTGCTAGAAAA 58.254 29.630 15.59 0.00 0.00 2.29
436 437 9.361315 GTCCTAAAACAAAGTTTGCTAGAAAAA 57.639 29.630 15.59 0.00 0.00 1.94
437 438 9.361315 TCCTAAAACAAAGTTTGCTAGAAAAAC 57.639 29.630 15.59 5.49 37.71 2.43
454 455 6.367686 GAAAAACTTTTCTAGGGAACGTCA 57.632 37.500 7.52 0.00 42.42 4.35
455 456 6.373186 AAAAACTTTTCTAGGGAACGTCAG 57.627 37.500 0.00 0.00 0.00 3.51
456 457 4.684484 AACTTTTCTAGGGAACGTCAGT 57.316 40.909 0.00 0.00 0.00 3.41
457 458 4.254402 ACTTTTCTAGGGAACGTCAGTC 57.746 45.455 0.00 0.00 0.00 3.51
458 459 3.640029 ACTTTTCTAGGGAACGTCAGTCA 59.360 43.478 0.00 0.00 0.00 3.41
459 460 4.100498 ACTTTTCTAGGGAACGTCAGTCAA 59.900 41.667 0.00 0.00 0.00 3.18
467 468 5.745227 AGGGAACGTCAGTCAATTATCATT 58.255 37.500 0.00 0.00 0.00 2.57
468 469 5.817816 AGGGAACGTCAGTCAATTATCATTC 59.182 40.000 0.00 0.00 0.00 2.67
540 546 8.169910 CAGATACGATACACTTACTCTTATCCG 58.830 40.741 0.00 0.00 0.00 4.18
556 573 6.705302 TCTTATCCGGTCATATCGTAGTACT 58.295 40.000 0.00 0.00 0.00 2.73
606 624 4.657814 TTTCCTTTGCCTGGAGAAGTAT 57.342 40.909 0.00 0.00 34.76 2.12
994 1090 1.127343 AGATAAGCAGGCAGGAGGTC 58.873 55.000 0.00 0.00 0.00 3.85
1029 1125 0.673644 CCAAGCTTGTAGTCGTGGGG 60.674 60.000 24.35 1.67 0.00 4.96
1056 1152 2.113860 TCCTTGTAATCCTGCTGCAC 57.886 50.000 0.00 0.00 0.00 4.57
1062 1158 0.608130 TAATCCTGCTGCACGTGTCT 59.392 50.000 18.38 0.00 0.00 3.41
1254 1362 1.375326 GAACGGCTTCCAGAAGGGT 59.625 57.895 9.36 0.00 38.80 4.34
1368 1476 2.114670 CCGGTGCGGCAAGATGATT 61.115 57.895 3.23 0.00 41.17 2.57
1671 1781 1.209128 CGTTTGAAGTGCGAGTGTCT 58.791 50.000 0.00 0.00 0.00 3.41
1673 1783 2.030457 CGTTTGAAGTGCGAGTGTCTTT 59.970 45.455 0.00 0.00 0.00 2.52
1674 1784 3.485216 CGTTTGAAGTGCGAGTGTCTTTT 60.485 43.478 0.00 0.00 0.00 2.27
1675 1785 3.673746 TTGAAGTGCGAGTGTCTTTTG 57.326 42.857 0.00 0.00 0.00 2.44
1690 1800 5.177511 GTGTCTTTTGTGTCAATCTCGATGA 59.822 40.000 0.00 0.00 0.00 2.92
1723 1846 3.251729 TGTCGAGTAGTTACTTCGTTGCT 59.748 43.478 6.39 0.00 36.50 3.91
1745 1896 7.321153 TGCTGAATAAAACTACTACCTCTGTC 58.679 38.462 0.00 0.00 0.00 3.51
1839 1994 4.377021 ACTATCGCTGTTTTCTGTTGTGA 58.623 39.130 0.00 0.00 0.00 3.58
1878 2069 8.522178 AATGCTACTCTCGTATTAGCAATAAC 57.478 34.615 13.41 0.00 45.98 1.89
1885 2076 9.216117 ACTCTCGTATTAGCAATAACACTTTTT 57.784 29.630 0.00 0.00 0.00 1.94
1886 2077 9.478019 CTCTCGTATTAGCAATAACACTTTTTG 57.522 33.333 0.00 0.00 0.00 2.44
1887 2078 7.960738 TCTCGTATTAGCAATAACACTTTTTGC 59.039 33.333 0.00 0.00 44.67 3.68
1892 2083 4.629527 GCAATAACACTTTTTGCTTCGG 57.370 40.909 0.00 0.00 41.86 4.30
1893 2084 4.048504 GCAATAACACTTTTTGCTTCGGT 58.951 39.130 0.00 0.00 41.86 4.69
1894 2085 4.085107 GCAATAACACTTTTTGCTTCGGTG 60.085 41.667 0.00 0.00 41.86 4.94
1895 2086 4.911514 ATAACACTTTTTGCTTCGGTGT 57.088 36.364 0.00 0.00 41.95 4.16
1896 2087 6.202937 CAATAACACTTTTTGCTTCGGTGTA 58.797 36.000 0.00 0.00 39.72 2.90
1901 2276 0.475044 TTTTGCTTCGGTGTACCCCT 59.525 50.000 0.00 0.00 0.00 4.79
1922 2297 3.325870 TCTAAACACATTGACGGCTGAG 58.674 45.455 0.00 0.00 0.00 3.35
1925 2300 2.479566 ACACATTGACGGCTGAGATT 57.520 45.000 0.00 0.00 0.00 2.40
1934 2311 3.321111 TGACGGCTGAGATTTCTATACCC 59.679 47.826 0.00 0.00 0.00 3.69
1936 2313 3.967987 ACGGCTGAGATTTCTATACCCTT 59.032 43.478 0.00 0.00 0.00 3.95
1970 2347 3.751698 GGTAGGATGATATTTTCACCCGC 59.248 47.826 0.00 0.00 43.81 6.13
1978 2355 0.534203 ATTTTCACCCGCGCCGATAT 60.534 50.000 0.00 0.00 0.00 1.63
2006 2383 3.663025 TGTGCATGAATCGAACTCAAGA 58.337 40.909 0.00 0.00 0.00 3.02
2007 2384 4.256110 TGTGCATGAATCGAACTCAAGAT 58.744 39.130 0.00 0.00 0.00 2.40
2036 2413 3.830755 GTCTAAGGAGGACCACACTAACA 59.169 47.826 0.00 0.00 38.94 2.41
2039 2416 3.487120 AGGAGGACCACACTAACAAAC 57.513 47.619 0.00 0.00 38.94 2.93
2044 2421 3.326880 AGGACCACACTAACAAACTAGGG 59.673 47.826 0.00 0.00 0.00 3.53
2073 2450 6.428159 CCTAATGCTTGTGTGTCTTTACTTCT 59.572 38.462 0.00 0.00 0.00 2.85
2074 2451 5.931441 ATGCTTGTGTGTCTTTACTTCTC 57.069 39.130 0.00 0.00 0.00 2.87
2075 2452 4.127171 TGCTTGTGTGTCTTTACTTCTCC 58.873 43.478 0.00 0.00 0.00 3.71
2076 2453 4.141711 TGCTTGTGTGTCTTTACTTCTCCT 60.142 41.667 0.00 0.00 0.00 3.69
2077 2454 5.069914 TGCTTGTGTGTCTTTACTTCTCCTA 59.930 40.000 0.00 0.00 0.00 2.94
2144 2521 7.827819 TGAATCGGTTCTTTTATCACTACTG 57.172 36.000 10.29 0.00 35.33 2.74
2194 2571 9.922305 CGGAAGAAAATTTTATCTCTCATACAC 57.078 33.333 2.75 0.00 0.00 2.90
2237 2614 5.105554 AGTCTCTAGAAATCTTGCATGACGT 60.106 40.000 4.14 0.00 0.00 4.34
2258 2635 7.334171 TGACGTCAGATGAAAACAACATGATAT 59.666 33.333 15.76 0.00 0.00 1.63
2259 2636 7.466805 ACGTCAGATGAAAACAACATGATATG 58.533 34.615 0.00 0.00 0.00 1.78
2261 2638 7.427318 CGTCAGATGAAAACAACATGATATGTG 59.573 37.037 0.00 0.00 44.07 3.21
2262 2639 8.453320 GTCAGATGAAAACAACATGATATGTGA 58.547 33.333 0.00 0.00 44.07 3.58
2263 2640 9.181061 TCAGATGAAAACAACATGATATGTGAT 57.819 29.630 0.00 0.00 44.07 3.06
2264 2641 9.233232 CAGATGAAAACAACATGATATGTGATG 57.767 33.333 0.00 0.00 44.07 3.07
2265 2642 8.963725 AGATGAAAACAACATGATATGTGATGT 58.036 29.630 0.00 0.00 44.07 3.06
2266 2643 9.577110 GATGAAAACAACATGATATGTGATGTT 57.423 29.630 0.00 1.51 42.72 2.71
2270 2647 3.614159 ACATGATATGTGATGTTGCGC 57.386 42.857 0.00 0.00 43.01 6.09
2271 2648 2.944349 ACATGATATGTGATGTTGCGCA 59.056 40.909 5.66 5.66 43.01 6.09
2272 2649 3.377798 ACATGATATGTGATGTTGCGCAA 59.622 39.130 21.02 21.02 43.01 4.85
2273 2650 4.142425 ACATGATATGTGATGTTGCGCAAA 60.142 37.500 26.87 15.55 43.01 3.68
2274 2651 4.431661 TGATATGTGATGTTGCGCAAAA 57.568 36.364 26.87 21.87 0.00 2.44
2275 2652 4.802999 TGATATGTGATGTTGCGCAAAAA 58.197 34.783 26.87 16.97 0.00 1.94
2301 2678 9.941664 AACATAGAGATGCGATAATTTTTGAAG 57.058 29.630 0.00 0.00 36.43 3.02
2302 2679 9.113838 ACATAGAGATGCGATAATTTTTGAAGT 57.886 29.630 0.00 0.00 36.43 3.01
2303 2680 9.378597 CATAGAGATGCGATAATTTTTGAAGTG 57.621 33.333 0.00 0.00 0.00 3.16
2304 2681 7.383102 AGAGATGCGATAATTTTTGAAGTGT 57.617 32.000 0.00 0.00 0.00 3.55
2305 2682 8.492673 AGAGATGCGATAATTTTTGAAGTGTA 57.507 30.769 0.00 0.00 0.00 2.90
2306 2683 8.391106 AGAGATGCGATAATTTTTGAAGTGTAC 58.609 33.333 0.00 0.00 0.00 2.90
2307 2684 8.268850 AGATGCGATAATTTTTGAAGTGTACT 57.731 30.769 0.00 0.00 0.00 2.73
2308 2685 8.391106 AGATGCGATAATTTTTGAAGTGTACTC 58.609 33.333 0.00 0.00 0.00 2.59
2309 2686 7.428282 TGCGATAATTTTTGAAGTGTACTCA 57.572 32.000 0.00 0.00 0.00 3.41
2310 2687 7.866729 TGCGATAATTTTTGAAGTGTACTCAA 58.133 30.769 0.00 0.00 0.00 3.02
2311 2688 8.015087 TGCGATAATTTTTGAAGTGTACTCAAG 58.985 33.333 0.00 0.00 0.00 3.02
2312 2689 7.481798 GCGATAATTTTTGAAGTGTACTCAAGG 59.518 37.037 0.00 0.00 0.00 3.61
2313 2690 7.962918 CGATAATTTTTGAAGTGTACTCAAGGG 59.037 37.037 0.00 0.00 0.00 3.95
2314 2691 6.405278 AATTTTTGAAGTGTACTCAAGGGG 57.595 37.500 0.00 0.00 0.00 4.79
2315 2692 4.513406 TTTTGAAGTGTACTCAAGGGGT 57.487 40.909 0.00 0.00 0.00 4.95
2316 2693 4.513406 TTTGAAGTGTACTCAAGGGGTT 57.487 40.909 0.00 0.00 0.00 4.11
2317 2694 4.513406 TTGAAGTGTACTCAAGGGGTTT 57.487 40.909 0.00 0.00 0.00 3.27
2318 2695 4.081322 TGAAGTGTACTCAAGGGGTTTC 57.919 45.455 0.00 0.00 0.00 2.78
2319 2696 3.181448 TGAAGTGTACTCAAGGGGTTTCC 60.181 47.826 0.00 0.00 0.00 3.13
2320 2697 2.414612 AGTGTACTCAAGGGGTTTCCA 58.585 47.619 0.00 0.00 38.24 3.53
2321 2698 2.781174 AGTGTACTCAAGGGGTTTCCAA 59.219 45.455 0.00 0.00 38.24 3.53
2322 2699 2.882761 GTGTACTCAAGGGGTTTCCAAC 59.117 50.000 0.00 0.00 38.24 3.77
2323 2700 2.781174 TGTACTCAAGGGGTTTCCAACT 59.219 45.455 0.00 0.00 38.24 3.16
2324 2701 3.203487 TGTACTCAAGGGGTTTCCAACTT 59.797 43.478 0.00 0.00 38.24 2.66
2325 2702 2.666317 ACTCAAGGGGTTTCCAACTTG 58.334 47.619 12.79 12.79 39.61 3.16
2326 2703 2.024369 ACTCAAGGGGTTTCCAACTTGT 60.024 45.455 16.14 2.99 39.42 3.16
2327 2704 2.362077 CTCAAGGGGTTTCCAACTTGTG 59.638 50.000 16.14 12.43 39.42 3.33
2342 2719 4.021102 ACTTGTGGTTGAGATGGTTAGG 57.979 45.455 0.00 0.00 0.00 2.69
2343 2720 3.394606 ACTTGTGGTTGAGATGGTTAGGT 59.605 43.478 0.00 0.00 0.00 3.08
2344 2721 3.417069 TGTGGTTGAGATGGTTAGGTG 57.583 47.619 0.00 0.00 0.00 4.00
2345 2722 2.039746 TGTGGTTGAGATGGTTAGGTGG 59.960 50.000 0.00 0.00 0.00 4.61
2346 2723 2.304761 GTGGTTGAGATGGTTAGGTGGA 59.695 50.000 0.00 0.00 0.00 4.02
2347 2724 2.304761 TGGTTGAGATGGTTAGGTGGAC 59.695 50.000 0.00 0.00 0.00 4.02
2348 2725 2.304761 GGTTGAGATGGTTAGGTGGACA 59.695 50.000 0.00 0.00 0.00 4.02
2349 2726 3.600388 GTTGAGATGGTTAGGTGGACAG 58.400 50.000 0.00 0.00 0.00 3.51
2350 2727 2.902608 TGAGATGGTTAGGTGGACAGT 58.097 47.619 0.00 0.00 0.00 3.55
2351 2728 2.567169 TGAGATGGTTAGGTGGACAGTG 59.433 50.000 0.00 0.00 0.00 3.66
2352 2729 2.832129 GAGATGGTTAGGTGGACAGTGA 59.168 50.000 0.00 0.00 0.00 3.41
2353 2730 3.452627 GAGATGGTTAGGTGGACAGTGAT 59.547 47.826 0.00 0.00 0.00 3.06
2354 2731 4.620723 AGATGGTTAGGTGGACAGTGATA 58.379 43.478 0.00 0.00 0.00 2.15
2355 2732 5.219739 AGATGGTTAGGTGGACAGTGATAT 58.780 41.667 0.00 0.00 0.00 1.63
2356 2733 5.305644 AGATGGTTAGGTGGACAGTGATATC 59.694 44.000 0.00 0.00 0.00 1.63
2357 2734 3.709653 TGGTTAGGTGGACAGTGATATCC 59.290 47.826 0.00 0.00 0.00 2.59
2358 2735 3.071167 GGTTAGGTGGACAGTGATATCCC 59.929 52.174 0.00 0.00 0.00 3.85
2359 2736 1.807814 AGGTGGACAGTGATATCCCC 58.192 55.000 0.00 0.00 0.00 4.81
2360 2737 1.009552 AGGTGGACAGTGATATCCCCA 59.990 52.381 0.00 0.00 0.00 4.96
2361 2738 1.843851 GGTGGACAGTGATATCCCCAA 59.156 52.381 0.00 0.00 0.00 4.12
2362 2739 2.421529 GGTGGACAGTGATATCCCCAAC 60.422 54.545 0.00 0.00 0.00 3.77
2363 2740 1.843851 TGGACAGTGATATCCCCAACC 59.156 52.381 0.00 0.00 0.00 3.77
2364 2741 1.143073 GGACAGTGATATCCCCAACCC 59.857 57.143 0.00 0.00 0.00 4.11
2365 2742 1.843851 GACAGTGATATCCCCAACCCA 59.156 52.381 0.00 0.00 0.00 4.51
2366 2743 2.443255 GACAGTGATATCCCCAACCCAT 59.557 50.000 0.00 0.00 0.00 4.00
2367 2744 2.443255 ACAGTGATATCCCCAACCCATC 59.557 50.000 0.00 0.00 0.00 3.51
2368 2745 2.442878 CAGTGATATCCCCAACCCATCA 59.557 50.000 0.00 0.00 0.00 3.07
2369 2746 2.713167 AGTGATATCCCCAACCCATCAG 59.287 50.000 0.00 0.00 0.00 2.90
2370 2747 2.065007 TGATATCCCCAACCCATCAGG 58.935 52.381 0.00 0.00 43.78 3.86
2386 2763 2.730550 CAGGTTTCAAATCCTGGTGC 57.269 50.000 10.72 0.00 45.11 5.01
2387 2764 2.242043 CAGGTTTCAAATCCTGGTGCT 58.758 47.619 10.72 0.00 45.11 4.40
2388 2765 2.229784 CAGGTTTCAAATCCTGGTGCTC 59.770 50.000 10.72 0.00 45.11 4.26
2389 2766 1.200020 GGTTTCAAATCCTGGTGCTCG 59.800 52.381 0.00 0.00 0.00 5.03
2390 2767 0.881118 TTTCAAATCCTGGTGCTCGC 59.119 50.000 0.00 0.00 0.00 5.03
2391 2768 0.250684 TTCAAATCCTGGTGCTCGCA 60.251 50.000 0.00 0.00 0.00 5.10
2392 2769 0.035152 TCAAATCCTGGTGCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
2393 2770 0.813184 CAAATCCTGGTGCTCGCATT 59.187 50.000 0.00 0.00 0.00 3.56
2394 2771 2.016318 CAAATCCTGGTGCTCGCATTA 58.984 47.619 0.00 0.00 0.00 1.90
2395 2772 2.620115 CAAATCCTGGTGCTCGCATTAT 59.380 45.455 0.00 0.00 0.00 1.28
2396 2773 2.645838 ATCCTGGTGCTCGCATTATT 57.354 45.000 0.00 0.00 0.00 1.40
2397 2774 2.418368 TCCTGGTGCTCGCATTATTT 57.582 45.000 0.00 0.00 0.00 1.40
2398 2775 2.288666 TCCTGGTGCTCGCATTATTTC 58.711 47.619 0.00 0.00 0.00 2.17
2399 2776 2.092968 TCCTGGTGCTCGCATTATTTCT 60.093 45.455 0.00 0.00 0.00 2.52
2400 2777 2.032550 CCTGGTGCTCGCATTATTTCTG 59.967 50.000 0.00 0.00 0.00 3.02
2401 2778 2.016318 TGGTGCTCGCATTATTTCTGG 58.984 47.619 0.00 0.00 0.00 3.86
2402 2779 2.288666 GGTGCTCGCATTATTTCTGGA 58.711 47.619 0.00 0.00 0.00 3.86
2403 2780 2.880890 GGTGCTCGCATTATTTCTGGAT 59.119 45.455 0.00 0.00 0.00 3.41
2404 2781 3.316308 GGTGCTCGCATTATTTCTGGATT 59.684 43.478 0.00 0.00 0.00 3.01
2405 2782 4.202050 GGTGCTCGCATTATTTCTGGATTT 60.202 41.667 0.00 0.00 0.00 2.17
2406 2783 5.008613 GGTGCTCGCATTATTTCTGGATTTA 59.991 40.000 0.00 0.00 0.00 1.40
2407 2784 6.294176 GGTGCTCGCATTATTTCTGGATTTAT 60.294 38.462 0.00 0.00 0.00 1.40
2408 2785 7.141363 GTGCTCGCATTATTTCTGGATTTATT 58.859 34.615 0.00 0.00 0.00 1.40
2409 2786 7.649306 GTGCTCGCATTATTTCTGGATTTATTT 59.351 33.333 0.00 0.00 0.00 1.40
2410 2787 7.862372 TGCTCGCATTATTTCTGGATTTATTTC 59.138 33.333 0.00 0.00 0.00 2.17
2411 2788 7.862372 GCTCGCATTATTTCTGGATTTATTTCA 59.138 33.333 0.00 0.00 0.00 2.69
2412 2789 9.390795 CTCGCATTATTTCTGGATTTATTTCAG 57.609 33.333 0.00 0.00 0.00 3.02
2413 2790 8.352201 TCGCATTATTTCTGGATTTATTTCAGG 58.648 33.333 0.00 0.00 0.00 3.86
2414 2791 8.352201 CGCATTATTTCTGGATTTATTTCAGGA 58.648 33.333 0.00 0.00 0.00 3.86
2420 2797 9.807649 ATTTCTGGATTTATTTCAGGATTTTCG 57.192 29.630 0.00 0.00 0.00 3.46
2421 2798 7.333528 TCTGGATTTATTTCAGGATTTTCGG 57.666 36.000 0.00 0.00 0.00 4.30
2422 2799 5.901552 TGGATTTATTTCAGGATTTTCGGC 58.098 37.500 0.00 0.00 0.00 5.54
2423 2800 4.976116 GGATTTATTTCAGGATTTTCGGCG 59.024 41.667 0.00 0.00 0.00 6.46
2424 2801 5.220970 GGATTTATTTCAGGATTTTCGGCGA 60.221 40.000 4.99 4.99 0.00 5.54
2425 2802 5.828299 TTTATTTCAGGATTTTCGGCGAT 57.172 34.783 11.76 0.00 0.00 4.58
2426 2803 3.698029 ATTTCAGGATTTTCGGCGATG 57.302 42.857 11.76 4.79 0.00 3.84
2427 2804 0.732571 TTCAGGATTTTCGGCGATGC 59.267 50.000 11.76 0.31 0.00 3.91
2428 2805 1.010797 CAGGATTTTCGGCGATGCG 60.011 57.895 11.76 0.00 0.00 4.73
2439 2816 2.787249 CGATGCGCTTTCAGTGGG 59.213 61.111 9.73 0.00 0.00 4.61
2440 2817 1.741401 CGATGCGCTTTCAGTGGGA 60.741 57.895 9.73 0.00 0.00 4.37
2441 2818 1.699656 CGATGCGCTTTCAGTGGGAG 61.700 60.000 9.73 0.00 0.00 4.30
2442 2819 1.372087 GATGCGCTTTCAGTGGGAGG 61.372 60.000 9.73 0.00 0.00 4.30
2443 2820 1.841302 ATGCGCTTTCAGTGGGAGGA 61.841 55.000 9.73 0.00 0.00 3.71
2444 2821 1.743252 GCGCTTTCAGTGGGAGGAG 60.743 63.158 0.00 0.00 0.00 3.69
2445 2822 1.975327 CGCTTTCAGTGGGAGGAGA 59.025 57.895 0.00 0.00 0.00 3.71
2446 2823 0.390472 CGCTTTCAGTGGGAGGAGAC 60.390 60.000 0.00 0.00 0.00 3.36
2447 2824 0.390472 GCTTTCAGTGGGAGGAGACG 60.390 60.000 0.00 0.00 0.00 4.18
2448 2825 0.969894 CTTTCAGTGGGAGGAGACGT 59.030 55.000 0.00 0.00 0.00 4.34
2449 2826 1.344763 CTTTCAGTGGGAGGAGACGTT 59.655 52.381 0.00 0.00 0.00 3.99
2450 2827 0.966920 TTCAGTGGGAGGAGACGTTC 59.033 55.000 0.00 0.00 0.00 3.95
2462 2839 4.332637 ACGTTCCCGTCGACCACG 62.333 66.667 10.58 15.06 46.28 4.94
2475 2852 3.379445 CCACGAGGTGCCTACGGT 61.379 66.667 12.22 0.00 31.34 4.83
2476 2853 2.048023 CCACGAGGTGCCTACGGTA 61.048 63.158 12.22 0.00 31.34 4.02
2477 2854 1.597797 CCACGAGGTGCCTACGGTAA 61.598 60.000 12.22 0.00 31.34 2.85
2478 2855 0.457337 CACGAGGTGCCTACGGTAAC 60.457 60.000 12.22 0.00 0.00 2.50
2479 2856 0.610232 ACGAGGTGCCTACGGTAACT 60.610 55.000 12.22 0.00 38.26 2.24
2480 2857 0.529378 CGAGGTGCCTACGGTAACTT 59.471 55.000 0.00 0.00 34.95 2.66
2481 2858 1.468736 CGAGGTGCCTACGGTAACTTC 60.469 57.143 0.00 0.00 34.95 3.01
2482 2859 0.529378 AGGTGCCTACGGTAACTTCG 59.471 55.000 0.00 0.00 28.97 3.79
2483 2860 0.244721 GGTGCCTACGGTAACTTCGT 59.755 55.000 0.00 0.00 43.64 3.85
2484 2861 1.472480 GGTGCCTACGGTAACTTCGTA 59.528 52.381 0.00 0.00 41.38 3.43
2485 2862 2.094752 GGTGCCTACGGTAACTTCGTAA 60.095 50.000 0.00 0.00 41.62 3.18
2486 2863 3.574614 GTGCCTACGGTAACTTCGTAAA 58.425 45.455 0.00 0.00 41.62 2.01
2487 2864 4.176271 GTGCCTACGGTAACTTCGTAAAT 58.824 43.478 0.00 0.00 41.62 1.40
2488 2865 4.266265 GTGCCTACGGTAACTTCGTAAATC 59.734 45.833 0.00 0.00 41.62 2.17
2489 2866 4.158394 TGCCTACGGTAACTTCGTAAATCT 59.842 41.667 0.00 0.00 41.62 2.40
2490 2867 4.737279 GCCTACGGTAACTTCGTAAATCTC 59.263 45.833 0.00 0.00 41.62 2.75
2491 2868 5.677091 GCCTACGGTAACTTCGTAAATCTCA 60.677 44.000 0.00 0.00 41.62 3.27
2492 2869 6.324819 CCTACGGTAACTTCGTAAATCTCAA 58.675 40.000 0.00 0.00 41.62 3.02
2493 2870 6.471519 CCTACGGTAACTTCGTAAATCTCAAG 59.528 42.308 0.00 0.00 41.62 3.02
2494 2871 6.017400 ACGGTAACTTCGTAAATCTCAAGA 57.983 37.500 0.00 0.00 39.22 3.02
2495 2872 6.628185 ACGGTAACTTCGTAAATCTCAAGAT 58.372 36.000 0.00 0.00 39.22 2.40
2496 2873 6.530534 ACGGTAACTTCGTAAATCTCAAGATG 59.469 38.462 0.00 0.00 39.22 2.90
2497 2874 6.750501 CGGTAACTTCGTAAATCTCAAGATGA 59.249 38.462 0.00 0.00 34.49 2.92
2498 2875 7.435488 CGGTAACTTCGTAAATCTCAAGATGAT 59.565 37.037 0.00 0.00 34.49 2.45
2499 2876 9.745880 GGTAACTTCGTAAATCTCAAGATGATA 57.254 33.333 0.00 0.00 34.49 2.15
2502 2879 8.304202 ACTTCGTAAATCTCAAGATGATATGC 57.696 34.615 0.00 0.00 34.49 3.14
2503 2880 7.386299 ACTTCGTAAATCTCAAGATGATATGCC 59.614 37.037 0.00 0.00 34.49 4.40
2504 2881 5.863935 TCGTAAATCTCAAGATGATATGCCG 59.136 40.000 0.00 0.00 34.49 5.69
2505 2882 5.062683 CGTAAATCTCAAGATGATATGCCGG 59.937 44.000 0.00 0.00 34.49 6.13
2506 2883 2.462456 TCTCAAGATGATATGCCGGC 57.538 50.000 22.73 22.73 0.00 6.13
2507 2884 1.973515 TCTCAAGATGATATGCCGGCT 59.026 47.619 29.70 15.76 0.00 5.52
2508 2885 2.028658 TCTCAAGATGATATGCCGGCTC 60.029 50.000 29.70 17.89 0.00 4.70
2509 2886 1.693606 TCAAGATGATATGCCGGCTCA 59.306 47.619 29.70 23.34 0.00 4.26
2510 2887 2.074576 CAAGATGATATGCCGGCTCAG 58.925 52.381 29.70 7.35 0.00 3.35
2511 2888 1.346062 AGATGATATGCCGGCTCAGT 58.654 50.000 29.70 13.44 0.00 3.41
2512 2889 1.274728 AGATGATATGCCGGCTCAGTC 59.725 52.381 29.70 19.55 0.00 3.51
2513 2890 1.274728 GATGATATGCCGGCTCAGTCT 59.725 52.381 29.70 8.26 0.00 3.24
2514 2891 1.123077 TGATATGCCGGCTCAGTCTT 58.877 50.000 29.70 5.10 0.00 3.01
2515 2892 1.486310 TGATATGCCGGCTCAGTCTTT 59.514 47.619 29.70 3.35 0.00 2.52
2516 2893 2.139118 GATATGCCGGCTCAGTCTTTC 58.861 52.381 29.70 9.22 0.00 2.62
2517 2894 0.179111 TATGCCGGCTCAGTCTTTCG 60.179 55.000 29.70 0.00 0.00 3.46
2518 2895 2.815647 GCCGGCTCAGTCTTTCGG 60.816 66.667 22.15 0.00 43.13 4.30
2519 2896 2.970639 CCGGCTCAGTCTTTCGGA 59.029 61.111 0.00 0.00 42.94 4.55
2520 2897 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
2521 2898 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
2522 2899 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
2523 2900 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
2524 2901 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
2525 2902 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
2526 2903 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
2527 2904 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
2528 2905 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
2529 2906 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
2530 2907 2.832129 AGTCTTTCGGAGGTGCTCATAA 59.168 45.455 0.00 0.00 31.08 1.90
2531 2908 3.118956 AGTCTTTCGGAGGTGCTCATAAG 60.119 47.826 0.00 0.00 31.08 1.73
2532 2909 2.168521 TCTTTCGGAGGTGCTCATAAGG 59.831 50.000 0.00 0.00 31.08 2.69
2533 2910 0.830648 TTCGGAGGTGCTCATAAGGG 59.169 55.000 0.00 0.00 31.08 3.95
2534 2911 0.325296 TCGGAGGTGCTCATAAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
2535 2912 1.063492 TCGGAGGTGCTCATAAGGGTA 60.063 52.381 0.00 0.00 31.08 3.69
2536 2913 1.341531 CGGAGGTGCTCATAAGGGTAG 59.658 57.143 0.00 0.00 31.08 3.18
2537 2914 1.694696 GGAGGTGCTCATAAGGGTAGG 59.305 57.143 0.00 0.00 31.08 3.18
2538 2915 1.694696 GAGGTGCTCATAAGGGTAGGG 59.305 57.143 0.00 0.00 0.00 3.53
2539 2916 1.009675 AGGTGCTCATAAGGGTAGGGT 59.990 52.381 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.587547 CTCAAAATCTAGGCCCGAGC 58.412 55.000 0.00 0.00 38.76 5.03
8 9 1.587547 GCTCAAAATCTAGGCCCGAG 58.412 55.000 0.00 0.00 0.00 4.63
9 10 0.180406 GGCTCAAAATCTAGGCCCGA 59.820 55.000 0.00 0.00 37.12 5.14
10 11 2.707902 GGCTCAAAATCTAGGCCCG 58.292 57.895 0.00 0.00 37.12 6.13
13 14 1.943340 CTTCGGGCTCAAAATCTAGGC 59.057 52.381 0.00 0.00 37.55 3.93
14 15 2.565841 CCTTCGGGCTCAAAATCTAGG 58.434 52.381 0.00 0.00 0.00 3.02
50 51 2.678580 AAAAATGACGGGCCCGGG 60.679 61.111 44.99 22.37 44.69 5.73
51 52 2.571231 CAAAAATGACGGGCCCGG 59.429 61.111 44.99 28.13 44.69 5.73
52 53 2.126110 GCAAAAATGACGGGCCCG 60.126 61.111 42.17 42.17 46.03 6.13
53 54 2.126110 CGCAAAAATGACGGGCCC 60.126 61.111 13.57 13.57 0.00 5.80
54 55 0.598942 AAACGCAAAAATGACGGGCC 60.599 50.000 0.00 0.00 0.00 5.80
55 56 1.213491 AAAACGCAAAAATGACGGGC 58.787 45.000 0.00 0.00 0.00 6.13
56 57 3.060607 CAGAAAAACGCAAAAATGACGGG 60.061 43.478 0.00 0.00 0.00 5.28
57 58 3.794028 TCAGAAAAACGCAAAAATGACGG 59.206 39.130 0.00 0.00 0.00 4.79
58 59 5.368552 TTCAGAAAAACGCAAAAATGACG 57.631 34.783 0.00 0.00 0.00 4.35
59 60 5.290885 ACCTTCAGAAAAACGCAAAAATGAC 59.709 36.000 0.00 0.00 0.00 3.06
60 61 5.415221 ACCTTCAGAAAAACGCAAAAATGA 58.585 33.333 0.00 0.00 0.00 2.57
61 62 5.554324 CGACCTTCAGAAAAACGCAAAAATG 60.554 40.000 0.00 0.00 0.00 2.32
62 63 4.502645 CGACCTTCAGAAAAACGCAAAAAT 59.497 37.500 0.00 0.00 0.00 1.82
63 64 3.854809 CGACCTTCAGAAAAACGCAAAAA 59.145 39.130 0.00 0.00 0.00 1.94
64 65 3.430931 CGACCTTCAGAAAAACGCAAAA 58.569 40.909 0.00 0.00 0.00 2.44
65 66 2.223386 CCGACCTTCAGAAAAACGCAAA 60.223 45.455 0.00 0.00 0.00 3.68
66 67 1.332375 CCGACCTTCAGAAAAACGCAA 59.668 47.619 0.00 0.00 0.00 4.85
67 68 0.941542 CCGACCTTCAGAAAAACGCA 59.058 50.000 0.00 0.00 0.00 5.24
68 69 0.237498 CCCGACCTTCAGAAAAACGC 59.763 55.000 0.00 0.00 0.00 4.84
69 70 0.237498 GCCCGACCTTCAGAAAAACG 59.763 55.000 0.00 0.00 0.00 3.60
70 71 0.596577 GGCCCGACCTTCAGAAAAAC 59.403 55.000 0.00 0.00 34.51 2.43
71 72 0.887387 CGGCCCGACCTTCAGAAAAA 60.887 55.000 0.00 0.00 35.61 1.94
72 73 1.302192 CGGCCCGACCTTCAGAAAA 60.302 57.895 0.00 0.00 35.61 2.29
73 74 2.345991 CGGCCCGACCTTCAGAAA 59.654 61.111 0.00 0.00 35.61 2.52
74 75 3.702048 CCGGCCCGACCTTCAGAA 61.702 66.667 3.71 0.00 35.61 3.02
100 101 1.223417 AACACGTAAAAGCCCGTCGG 61.223 55.000 3.60 3.60 34.59 4.79
101 102 0.162294 GAACACGTAAAAGCCCGTCG 59.838 55.000 0.00 0.00 34.59 5.12
102 103 0.162294 CGAACACGTAAAAGCCCGTC 59.838 55.000 0.00 0.00 34.59 4.79
103 104 1.223417 CCGAACACGTAAAAGCCCGT 61.223 55.000 0.00 0.00 37.90 5.28
104 105 1.494189 CCGAACACGTAAAAGCCCG 59.506 57.895 0.00 0.00 0.00 6.13
105 106 1.871077 CCCGAACACGTAAAAGCCC 59.129 57.895 0.00 0.00 0.00 5.19
106 107 1.208358 GCCCGAACACGTAAAAGCC 59.792 57.895 0.00 0.00 0.00 4.35
107 108 1.208358 GGCCCGAACACGTAAAAGC 59.792 57.895 0.00 0.00 0.00 3.51
108 109 1.494189 CGGCCCGAACACGTAAAAG 59.506 57.895 0.00 0.00 0.00 2.27
109 110 1.960250 CCGGCCCGAACACGTAAAA 60.960 57.895 3.71 0.00 0.00 1.52
110 111 2.357275 CCGGCCCGAACACGTAAA 60.357 61.111 3.71 0.00 0.00 2.01
111 112 4.376176 CCCGGCCCGAACACGTAA 62.376 66.667 3.71 0.00 0.00 3.18
128 129 0.744771 CCTGTTTTCTAGGCCCGAGC 60.745 60.000 0.00 0.00 38.76 5.03
129 130 3.460648 CCTGTTTTCTAGGCCCGAG 57.539 57.895 0.00 0.00 0.00 4.63
135 136 1.668419 CATCGGGCCTGTTTTCTAGG 58.332 55.000 12.43 0.00 38.39 3.02
136 137 1.668419 CCATCGGGCCTGTTTTCTAG 58.332 55.000 12.43 0.00 0.00 2.43
137 138 3.873781 CCATCGGGCCTGTTTTCTA 57.126 52.632 12.43 0.00 0.00 2.10
138 139 4.743018 CCATCGGGCCTGTTTTCT 57.257 55.556 12.43 0.00 0.00 2.52
184 185 1.005156 GCCAAGCCCGATGCAAAAA 60.005 52.632 0.00 0.00 44.83 1.94
185 186 0.610509 TAGCCAAGCCCGATGCAAAA 60.611 50.000 0.00 0.00 44.83 2.44
186 187 1.001517 TAGCCAAGCCCGATGCAAA 60.002 52.632 0.00 0.00 44.83 3.68
187 188 1.451927 CTAGCCAAGCCCGATGCAA 60.452 57.895 0.00 0.00 44.83 4.08
188 189 2.190313 CTAGCCAAGCCCGATGCA 59.810 61.111 0.00 0.00 44.83 3.96
189 190 2.592861 CCTAGCCAAGCCCGATGC 60.593 66.667 0.00 0.00 41.71 3.91
190 191 2.592861 GCCTAGCCAAGCCCGATG 60.593 66.667 0.00 0.00 0.00 3.84
226 227 3.151710 TGGCCATACCTCGGGACG 61.152 66.667 0.00 0.00 46.96 4.79
227 228 2.808206 CCTGGCCATACCTCGGGAC 61.808 68.421 5.51 0.00 40.22 4.46
228 229 1.951923 TACCTGGCCATACCTCGGGA 61.952 60.000 5.51 0.00 40.22 5.14
229 230 0.836400 ATACCTGGCCATACCTCGGG 60.836 60.000 5.51 4.26 40.22 5.14
230 231 1.825474 CTATACCTGGCCATACCTCGG 59.175 57.143 5.51 5.16 40.22 4.63
231 232 2.526432 ACTATACCTGGCCATACCTCG 58.474 52.381 5.51 0.00 40.22 4.63
232 233 3.008049 CCAACTATACCTGGCCATACCTC 59.992 52.174 5.51 0.00 40.22 3.85
233 234 2.979678 CCAACTATACCTGGCCATACCT 59.020 50.000 5.51 0.00 40.22 3.08
234 235 2.039879 CCCAACTATACCTGGCCATACC 59.960 54.545 5.51 0.00 39.84 2.73
235 236 2.039879 CCCCAACTATACCTGGCCATAC 59.960 54.545 5.51 0.00 0.00 2.39
236 237 2.344592 CCCCAACTATACCTGGCCATA 58.655 52.381 5.51 0.00 0.00 2.74
237 238 1.149101 CCCCAACTATACCTGGCCAT 58.851 55.000 5.51 0.00 0.00 4.40
238 239 0.253441 ACCCCAACTATACCTGGCCA 60.253 55.000 4.71 4.71 0.00 5.36
239 240 0.182775 CACCCCAACTATACCTGGCC 59.817 60.000 0.00 0.00 0.00 5.36
240 241 0.182775 CCACCCCAACTATACCTGGC 59.817 60.000 0.00 0.00 0.00 4.85
241 242 1.887797 TCCACCCCAACTATACCTGG 58.112 55.000 0.00 0.00 0.00 4.45
242 243 2.777692 ACATCCACCCCAACTATACCTG 59.222 50.000 0.00 0.00 0.00 4.00
243 244 3.145559 ACATCCACCCCAACTATACCT 57.854 47.619 0.00 0.00 0.00 3.08
244 245 3.945640 AACATCCACCCCAACTATACC 57.054 47.619 0.00 0.00 0.00 2.73
245 246 5.881923 TCTAACATCCACCCCAACTATAC 57.118 43.478 0.00 0.00 0.00 1.47
246 247 7.420913 GGAAATCTAACATCCACCCCAACTATA 60.421 40.741 0.00 0.00 33.30 1.31
247 248 5.994416 AATCTAACATCCACCCCAACTAT 57.006 39.130 0.00 0.00 0.00 2.12
248 249 5.339695 GGAAATCTAACATCCACCCCAACTA 60.340 44.000 0.00 0.00 33.30 2.24
249 250 4.569865 GGAAATCTAACATCCACCCCAACT 60.570 45.833 0.00 0.00 33.30 3.16
250 251 3.699538 GGAAATCTAACATCCACCCCAAC 59.300 47.826 0.00 0.00 33.30 3.77
251 252 3.596046 AGGAAATCTAACATCCACCCCAA 59.404 43.478 0.00 0.00 35.62 4.12
252 253 3.197983 AGGAAATCTAACATCCACCCCA 58.802 45.455 0.00 0.00 35.62 4.96
253 254 3.953542 AGGAAATCTAACATCCACCCC 57.046 47.619 0.00 0.00 35.62 4.95
309 310 4.712051 TCATAGAATTGGATCCCACAGG 57.288 45.455 9.90 0.00 30.78 4.00
310 311 6.301486 TGAATCATAGAATTGGATCCCACAG 58.699 40.000 9.90 0.00 30.78 3.66
311 312 6.264771 TGAATCATAGAATTGGATCCCACA 57.735 37.500 9.90 0.00 30.78 4.17
312 313 7.587037 TTTGAATCATAGAATTGGATCCCAC 57.413 36.000 9.90 0.00 30.78 4.61
313 314 8.005976 TCATTTGAATCATAGAATTGGATCCCA 58.994 33.333 9.90 0.00 0.00 4.37
314 315 8.302438 GTCATTTGAATCATAGAATTGGATCCC 58.698 37.037 9.90 0.00 0.00 3.85
315 316 8.302438 GGTCATTTGAATCATAGAATTGGATCC 58.698 37.037 4.20 4.20 0.00 3.36
316 317 8.853126 TGGTCATTTGAATCATAGAATTGGATC 58.147 33.333 0.00 0.00 0.00 3.36
317 318 8.771521 TGGTCATTTGAATCATAGAATTGGAT 57.228 30.769 0.00 0.00 0.00 3.41
318 319 8.592529 TTGGTCATTTGAATCATAGAATTGGA 57.407 30.769 0.00 0.00 0.00 3.53
396 397 7.889873 TGTTTTAGGACTCCTTTGATTCAAA 57.110 32.000 11.19 11.19 34.61 2.69
397 398 7.889873 TTGTTTTAGGACTCCTTTGATTCAA 57.110 32.000 1.94 0.00 34.61 2.69
398 399 7.559897 ACTTTGTTTTAGGACTCCTTTGATTCA 59.440 33.333 1.94 0.00 34.61 2.57
399 400 7.941919 ACTTTGTTTTAGGACTCCTTTGATTC 58.058 34.615 1.94 0.00 34.61 2.52
400 401 7.898014 ACTTTGTTTTAGGACTCCTTTGATT 57.102 32.000 1.94 0.00 34.61 2.57
401 402 7.898014 AACTTTGTTTTAGGACTCCTTTGAT 57.102 32.000 1.94 0.00 34.61 2.57
402 403 7.543756 CAAACTTTGTTTTAGGACTCCTTTGA 58.456 34.615 1.94 0.00 34.61 2.69
403 404 6.255670 GCAAACTTTGTTTTAGGACTCCTTTG 59.744 38.462 1.94 0.00 34.61 2.77
404 405 6.154534 AGCAAACTTTGTTTTAGGACTCCTTT 59.845 34.615 1.94 0.00 34.61 3.11
405 406 5.656859 AGCAAACTTTGTTTTAGGACTCCTT 59.343 36.000 1.94 0.00 34.61 3.36
406 407 5.201243 AGCAAACTTTGTTTTAGGACTCCT 58.799 37.500 2.31 2.31 37.71 3.69
407 408 5.515797 AGCAAACTTTGTTTTAGGACTCC 57.484 39.130 3.48 0.00 0.00 3.85
408 409 7.492352 TCTAGCAAACTTTGTTTTAGGACTC 57.508 36.000 3.48 0.00 0.00 3.36
409 410 7.875327 TTCTAGCAAACTTTGTTTTAGGACT 57.125 32.000 3.48 0.00 0.00 3.85
410 411 8.920509 TTTTCTAGCAAACTTTGTTTTAGGAC 57.079 30.769 3.48 0.00 0.00 3.85
411 412 9.361315 GTTTTTCTAGCAAACTTTGTTTTAGGA 57.639 29.630 3.48 0.00 32.32 2.94
412 413 9.366216 AGTTTTTCTAGCAAACTTTGTTTTAGG 57.634 29.630 11.98 0.00 40.83 2.69
431 432 6.037940 ACTGACGTTCCCTAGAAAAGTTTTTC 59.962 38.462 1.64 8.87 45.22 2.29
432 433 5.884232 ACTGACGTTCCCTAGAAAAGTTTTT 59.116 36.000 1.64 0.00 32.58 1.94
433 434 5.434408 ACTGACGTTCCCTAGAAAAGTTTT 58.566 37.500 0.00 0.00 32.58 2.43
434 435 5.032327 ACTGACGTTCCCTAGAAAAGTTT 57.968 39.130 0.00 0.00 32.58 2.66
435 436 4.100498 TGACTGACGTTCCCTAGAAAAGTT 59.900 41.667 0.00 0.00 32.58 2.66
436 437 3.640029 TGACTGACGTTCCCTAGAAAAGT 59.360 43.478 0.00 0.00 32.58 2.66
437 438 4.252971 TGACTGACGTTCCCTAGAAAAG 57.747 45.455 0.00 0.00 32.58 2.27
438 439 4.675976 TTGACTGACGTTCCCTAGAAAA 57.324 40.909 0.00 0.00 32.58 2.29
439 440 4.884668 ATTGACTGACGTTCCCTAGAAA 57.115 40.909 0.00 0.00 32.58 2.52
440 441 4.884668 AATTGACTGACGTTCCCTAGAA 57.115 40.909 0.00 0.00 0.00 2.10
441 442 5.655090 TGATAATTGACTGACGTTCCCTAGA 59.345 40.000 0.00 0.00 0.00 2.43
442 443 5.902681 TGATAATTGACTGACGTTCCCTAG 58.097 41.667 0.00 0.00 0.00 3.02
443 444 5.925506 TGATAATTGACTGACGTTCCCTA 57.074 39.130 0.00 0.00 0.00 3.53
444 445 4.819105 TGATAATTGACTGACGTTCCCT 57.181 40.909 0.00 0.00 0.00 4.20
445 446 5.007724 GGAATGATAATTGACTGACGTTCCC 59.992 44.000 0.00 0.00 37.42 3.97
446 447 5.007724 GGGAATGATAATTGACTGACGTTCC 59.992 44.000 0.00 0.00 40.51 3.62
447 448 5.276868 CGGGAATGATAATTGACTGACGTTC 60.277 44.000 0.00 0.00 0.00 3.95
448 449 4.570772 CGGGAATGATAATTGACTGACGTT 59.429 41.667 0.00 0.00 0.00 3.99
449 450 4.119862 CGGGAATGATAATTGACTGACGT 58.880 43.478 0.00 0.00 0.00 4.34
450 451 4.119862 ACGGGAATGATAATTGACTGACG 58.880 43.478 0.00 0.00 0.00 4.35
451 452 7.407337 GTTAACGGGAATGATAATTGACTGAC 58.593 38.462 0.00 0.00 0.00 3.51
452 453 6.540914 GGTTAACGGGAATGATAATTGACTGA 59.459 38.462 0.00 0.00 0.00 3.41
453 454 6.511121 CGGTTAACGGGAATGATAATTGACTG 60.511 42.308 5.30 0.00 39.42 3.51
454 455 5.526111 CGGTTAACGGGAATGATAATTGACT 59.474 40.000 5.30 0.00 39.42 3.41
455 456 5.744490 CGGTTAACGGGAATGATAATTGAC 58.256 41.667 5.30 0.00 39.42 3.18
456 457 5.994887 CGGTTAACGGGAATGATAATTGA 57.005 39.130 5.30 0.00 39.42 2.57
514 515 8.169910 CGGATAAGAGTAAGTGTATCGTATCTG 58.830 40.741 0.00 0.00 35.82 2.90
540 546 5.663795 TCGTGAAGTACTACGATATGACC 57.336 43.478 15.21 0.00 43.54 4.02
568 585 3.016736 GGAAATTCCAAGATCCAAGCGA 58.983 45.455 7.23 0.00 36.28 4.93
606 624 4.746535 TGGCAGAGATCGTACCAAATTA 57.253 40.909 0.00 0.00 0.00 1.40
830 866 0.661020 CTTTGTCACACGTGGTTCCC 59.339 55.000 21.57 3.34 0.00 3.97
973 1050 2.903135 GACCTCCTGCCTGCTTATCTAT 59.097 50.000 0.00 0.00 0.00 1.98
974 1051 2.091055 AGACCTCCTGCCTGCTTATCTA 60.091 50.000 0.00 0.00 0.00 1.98
1029 1125 1.215423 AGGATTACAAGGATGGCCACC 59.785 52.381 8.16 12.35 36.29 4.61
1368 1476 2.032376 TGCTTGCTGGTGATGCGA 59.968 55.556 0.00 0.00 0.00 5.10
1671 1781 5.869344 CCTACTCATCGAGATTGACACAAAA 59.131 40.000 0.00 0.00 33.32 2.44
1673 1783 4.462834 ACCTACTCATCGAGATTGACACAA 59.537 41.667 0.00 0.00 33.32 3.33
1674 1784 4.017126 ACCTACTCATCGAGATTGACACA 58.983 43.478 0.00 0.00 33.32 3.72
1675 1785 4.640789 ACCTACTCATCGAGATTGACAC 57.359 45.455 0.00 0.00 33.32 3.67
1690 1800 4.219264 ACTACTCGACAAGCTACCTACT 57.781 45.455 0.00 0.00 0.00 2.57
1723 1846 7.692460 TCGACAGAGGTAGTAGTTTTATTCA 57.308 36.000 0.00 0.00 0.00 2.57
1745 1896 2.132762 GATAAACCCGCACTACCATCG 58.867 52.381 0.00 0.00 0.00 3.84
1872 2063 5.040635 ACACCGAAGCAAAAAGTGTTATTG 58.959 37.500 0.00 0.00 38.47 1.90
1878 2069 2.287368 GGGTACACCGAAGCAAAAAGTG 60.287 50.000 0.00 0.00 36.71 3.16
1885 2076 0.040058 TAGAGGGGTACACCGAAGCA 59.960 55.000 8.95 0.00 41.60 3.91
1886 2077 1.188863 TTAGAGGGGTACACCGAAGC 58.811 55.000 8.95 0.00 41.60 3.86
1887 2078 2.564062 TGTTTAGAGGGGTACACCGAAG 59.436 50.000 8.95 0.00 41.60 3.79
1890 2081 1.619827 TGTGTTTAGAGGGGTACACCG 59.380 52.381 8.95 0.00 41.60 4.94
1891 2082 3.994931 ATGTGTTTAGAGGGGTACACC 57.005 47.619 5.83 5.83 39.11 4.16
1892 2083 4.694037 GTCAATGTGTTTAGAGGGGTACAC 59.306 45.833 0.00 0.00 0.00 2.90
1893 2084 4.561938 CGTCAATGTGTTTAGAGGGGTACA 60.562 45.833 0.00 0.00 0.00 2.90
1894 2085 3.930848 CGTCAATGTGTTTAGAGGGGTAC 59.069 47.826 0.00 0.00 0.00 3.34
1895 2086 3.055675 CCGTCAATGTGTTTAGAGGGGTA 60.056 47.826 0.00 0.00 33.59 3.69
1896 2087 2.290071 CCGTCAATGTGTTTAGAGGGGT 60.290 50.000 0.00 0.00 33.59 4.95
1901 2276 3.006430 TCTCAGCCGTCAATGTGTTTAGA 59.994 43.478 0.00 0.00 0.00 2.10
1953 2330 1.069227 GGCGCGGGTGAAAATATCATC 60.069 52.381 8.83 0.00 40.97 2.92
1957 2334 0.534203 ATCGGCGCGGGTGAAAATAT 60.534 50.000 15.48 0.00 0.00 1.28
1959 2336 0.534203 ATATCGGCGCGGGTGAAAAT 60.534 50.000 15.48 2.60 0.00 1.82
1960 2337 1.153329 ATATCGGCGCGGGTGAAAA 60.153 52.632 15.48 0.00 0.00 2.29
1978 2355 2.361483 ATTCATGCACAGGCCGCA 60.361 55.556 6.25 6.25 44.94 5.69
1981 2358 0.099436 GTTCGATTCATGCACAGGCC 59.901 55.000 0.00 0.00 40.13 5.19
1987 2364 4.763073 AGATCTTGAGTTCGATTCATGCA 58.237 39.130 0.00 0.00 0.00 3.96
2022 2399 3.326880 CCCTAGTTTGTTAGTGTGGTCCT 59.673 47.826 0.00 0.00 0.00 3.85
2056 2433 8.974060 AAAATAGGAGAAGTAAAGACACACAA 57.026 30.769 0.00 0.00 0.00 3.33
2084 2461 2.415168 CAGCCGCGAAATGAAGTAGAAA 59.585 45.455 8.23 0.00 0.00 2.52
2102 2479 1.754234 AACAATGATCCGGCCCAGC 60.754 57.895 0.00 0.00 0.00 4.85
2109 2486 3.623060 AGAACCGATTCAACAATGATCCG 59.377 43.478 0.00 0.00 37.29 4.18
2110 2487 5.567138 AAGAACCGATTCAACAATGATCC 57.433 39.130 0.00 0.00 37.29 3.36
2112 2489 8.739039 TGATAAAAGAACCGATTCAACAATGAT 58.261 29.630 0.00 0.00 37.29 2.45
2113 2490 8.020819 GTGATAAAAGAACCGATTCAACAATGA 58.979 33.333 0.00 0.00 37.29 2.57
2168 2545 9.922305 GTGTATGAGAGATAAAATTTTCTTCCG 57.078 33.333 6.72 0.00 0.00 4.30
2178 2555 7.553044 TCTCGAGAGTGTGTATGAGAGATAAAA 59.447 37.037 12.08 0.00 0.00 1.52
2179 2556 7.011576 GTCTCGAGAGTGTGTATGAGAGATAAA 59.988 40.741 17.22 0.00 36.17 1.40
2180 2557 6.480651 GTCTCGAGAGTGTGTATGAGAGATAA 59.519 42.308 17.22 0.00 36.17 1.75
2183 2560 4.185394 GTCTCGAGAGTGTGTATGAGAGA 58.815 47.826 17.22 0.00 33.52 3.10
2210 2587 7.043722 CGTCATGCAAGATTTCTAGAGACTTAC 60.044 40.741 0.00 0.00 0.00 2.34
2214 2591 5.105752 ACGTCATGCAAGATTTCTAGAGAC 58.894 41.667 0.00 0.00 0.00 3.36
2220 2597 3.930336 TCTGACGTCATGCAAGATTTCT 58.070 40.909 20.40 0.00 0.00 2.52
2237 2614 8.564509 TCACATATCATGTTGTTTTCATCTGA 57.435 30.769 0.00 0.00 42.70 3.27
2275 2652 9.941664 CTTCAAAAATTATCGCATCTCTATGTT 57.058 29.630 0.00 0.00 35.38 2.71
2276 2653 9.113838 ACTTCAAAAATTATCGCATCTCTATGT 57.886 29.630 0.00 0.00 35.38 2.29
2277 2654 9.378597 CACTTCAAAAATTATCGCATCTCTATG 57.621 33.333 0.00 0.00 36.09 2.23
2278 2655 9.113838 ACACTTCAAAAATTATCGCATCTCTAT 57.886 29.630 0.00 0.00 0.00 1.98
2279 2656 8.492673 ACACTTCAAAAATTATCGCATCTCTA 57.507 30.769 0.00 0.00 0.00 2.43
2280 2657 7.383102 ACACTTCAAAAATTATCGCATCTCT 57.617 32.000 0.00 0.00 0.00 3.10
2281 2658 8.391106 AGTACACTTCAAAAATTATCGCATCTC 58.609 33.333 0.00 0.00 0.00 2.75
2282 2659 8.268850 AGTACACTTCAAAAATTATCGCATCT 57.731 30.769 0.00 0.00 0.00 2.90
2283 2660 8.175069 TGAGTACACTTCAAAAATTATCGCATC 58.825 33.333 0.00 0.00 0.00 3.91
2284 2661 8.039603 TGAGTACACTTCAAAAATTATCGCAT 57.960 30.769 0.00 0.00 0.00 4.73
2285 2662 7.428282 TGAGTACACTTCAAAAATTATCGCA 57.572 32.000 0.00 0.00 0.00 5.10
2286 2663 7.481798 CCTTGAGTACACTTCAAAAATTATCGC 59.518 37.037 0.00 0.00 0.00 4.58
2287 2664 7.962918 CCCTTGAGTACACTTCAAAAATTATCG 59.037 37.037 0.00 0.00 0.00 2.92
2288 2665 8.244113 CCCCTTGAGTACACTTCAAAAATTATC 58.756 37.037 0.00 0.00 0.00 1.75
2289 2666 7.728532 ACCCCTTGAGTACACTTCAAAAATTAT 59.271 33.333 0.00 0.00 0.00 1.28
2290 2667 7.064229 ACCCCTTGAGTACACTTCAAAAATTA 58.936 34.615 0.00 0.00 0.00 1.40
2291 2668 5.897250 ACCCCTTGAGTACACTTCAAAAATT 59.103 36.000 0.00 0.00 0.00 1.82
2292 2669 5.454966 ACCCCTTGAGTACACTTCAAAAAT 58.545 37.500 0.00 0.00 0.00 1.82
2293 2670 4.862371 ACCCCTTGAGTACACTTCAAAAA 58.138 39.130 0.00 0.00 0.00 1.94
2294 2671 4.513406 ACCCCTTGAGTACACTTCAAAA 57.487 40.909 0.00 0.00 0.00 2.44
2295 2672 4.513406 AACCCCTTGAGTACACTTCAAA 57.487 40.909 0.00 0.00 0.00 2.69
2296 2673 4.457466 GAAACCCCTTGAGTACACTTCAA 58.543 43.478 0.00 0.00 0.00 2.69
2297 2674 3.181448 GGAAACCCCTTGAGTACACTTCA 60.181 47.826 0.00 0.00 0.00 3.02
2298 2675 3.181448 TGGAAACCCCTTGAGTACACTTC 60.181 47.826 0.00 0.00 35.38 3.01
2299 2676 2.781174 TGGAAACCCCTTGAGTACACTT 59.219 45.455 0.00 0.00 35.38 3.16
2300 2677 2.414612 TGGAAACCCCTTGAGTACACT 58.585 47.619 0.00 0.00 35.38 3.55
2301 2678 2.882761 GTTGGAAACCCCTTGAGTACAC 59.117 50.000 0.00 0.00 42.21 2.90
2302 2679 3.217681 GTTGGAAACCCCTTGAGTACA 57.782 47.619 0.00 0.00 42.21 2.90
2320 2697 4.141251 ACCTAACCATCTCAACCACAAGTT 60.141 41.667 0.00 0.00 40.16 2.66
2321 2698 3.394606 ACCTAACCATCTCAACCACAAGT 59.605 43.478 0.00 0.00 0.00 3.16
2322 2699 3.753272 CACCTAACCATCTCAACCACAAG 59.247 47.826 0.00 0.00 0.00 3.16
2323 2700 3.497763 CCACCTAACCATCTCAACCACAA 60.498 47.826 0.00 0.00 0.00 3.33
2324 2701 2.039746 CCACCTAACCATCTCAACCACA 59.960 50.000 0.00 0.00 0.00 4.17
2325 2702 2.304761 TCCACCTAACCATCTCAACCAC 59.695 50.000 0.00 0.00 0.00 4.16
2326 2703 2.304761 GTCCACCTAACCATCTCAACCA 59.695 50.000 0.00 0.00 0.00 3.67
2327 2704 2.304761 TGTCCACCTAACCATCTCAACC 59.695 50.000 0.00 0.00 0.00 3.77
2328 2705 3.008049 ACTGTCCACCTAACCATCTCAAC 59.992 47.826 0.00 0.00 0.00 3.18
2329 2706 3.007940 CACTGTCCACCTAACCATCTCAA 59.992 47.826 0.00 0.00 0.00 3.02
2330 2707 2.567169 CACTGTCCACCTAACCATCTCA 59.433 50.000 0.00 0.00 0.00 3.27
2331 2708 2.832129 TCACTGTCCACCTAACCATCTC 59.168 50.000 0.00 0.00 0.00 2.75
2332 2709 2.902608 TCACTGTCCACCTAACCATCT 58.097 47.619 0.00 0.00 0.00 2.90
2333 2710 3.914426 ATCACTGTCCACCTAACCATC 57.086 47.619 0.00 0.00 0.00 3.51
2334 2711 4.348168 GGATATCACTGTCCACCTAACCAT 59.652 45.833 4.83 0.00 33.05 3.55
2335 2712 3.709653 GGATATCACTGTCCACCTAACCA 59.290 47.826 4.83 0.00 33.05 3.67
2336 2713 3.071167 GGGATATCACTGTCCACCTAACC 59.929 52.174 4.83 0.00 34.44 2.85
2337 2714 3.071167 GGGGATATCACTGTCCACCTAAC 59.929 52.174 4.65 0.00 34.44 2.34
2338 2715 3.311028 TGGGGATATCACTGTCCACCTAA 60.311 47.826 4.65 0.00 35.25 2.69
2339 2716 2.248950 TGGGGATATCACTGTCCACCTA 59.751 50.000 4.65 0.00 35.25 3.08
2340 2717 1.009552 TGGGGATATCACTGTCCACCT 59.990 52.381 4.65 0.00 35.25 4.00
2341 2718 1.507140 TGGGGATATCACTGTCCACC 58.493 55.000 4.65 0.00 35.25 4.61
2342 2719 2.421529 GGTTGGGGATATCACTGTCCAC 60.422 54.545 4.65 0.00 36.63 4.02
2343 2720 1.843851 GGTTGGGGATATCACTGTCCA 59.156 52.381 4.65 1.40 34.44 4.02
2344 2721 1.143073 GGGTTGGGGATATCACTGTCC 59.857 57.143 4.65 4.82 32.06 4.02
2345 2722 1.843851 TGGGTTGGGGATATCACTGTC 59.156 52.381 4.65 0.00 0.00 3.51
2346 2723 1.979809 TGGGTTGGGGATATCACTGT 58.020 50.000 4.65 0.00 0.00 3.55
2347 2724 2.442878 TGATGGGTTGGGGATATCACTG 59.557 50.000 4.65 0.00 0.00 3.66
2348 2725 2.713167 CTGATGGGTTGGGGATATCACT 59.287 50.000 4.65 0.00 0.00 3.41
2349 2726 2.224867 CCTGATGGGTTGGGGATATCAC 60.225 54.545 4.83 0.00 0.00 3.06
2350 2727 2.065007 CCTGATGGGTTGGGGATATCA 58.935 52.381 4.83 0.00 0.00 2.15
2351 2728 2.887151 CCTGATGGGTTGGGGATATC 57.113 55.000 0.00 0.00 0.00 1.63
2368 2745 2.519013 GAGCACCAGGATTTGAAACCT 58.481 47.619 0.00 0.00 36.92 3.50
2369 2746 1.200020 CGAGCACCAGGATTTGAAACC 59.800 52.381 0.00 0.00 0.00 3.27
2370 2747 1.401539 GCGAGCACCAGGATTTGAAAC 60.402 52.381 0.00 0.00 0.00 2.78
2371 2748 0.881118 GCGAGCACCAGGATTTGAAA 59.119 50.000 0.00 0.00 0.00 2.69
2372 2749 0.250684 TGCGAGCACCAGGATTTGAA 60.251 50.000 0.00 0.00 0.00 2.69
2373 2750 0.035152 ATGCGAGCACCAGGATTTGA 60.035 50.000 0.00 0.00 0.00 2.69
2374 2751 0.813184 AATGCGAGCACCAGGATTTG 59.187 50.000 0.00 0.00 0.00 2.32
2375 2752 2.418368 TAATGCGAGCACCAGGATTT 57.582 45.000 0.00 0.00 31.11 2.17
2376 2753 2.645838 ATAATGCGAGCACCAGGATT 57.354 45.000 0.00 0.00 33.17 3.01
2377 2754 2.645838 AATAATGCGAGCACCAGGAT 57.354 45.000 0.00 0.00 0.00 3.24
2378 2755 2.092968 AGAAATAATGCGAGCACCAGGA 60.093 45.455 0.00 0.00 0.00 3.86
2379 2756 2.032550 CAGAAATAATGCGAGCACCAGG 59.967 50.000 0.00 0.00 0.00 4.45
2380 2757 2.032550 CCAGAAATAATGCGAGCACCAG 59.967 50.000 0.00 0.00 0.00 4.00
2381 2758 2.016318 CCAGAAATAATGCGAGCACCA 58.984 47.619 0.00 0.00 0.00 4.17
2382 2759 2.288666 TCCAGAAATAATGCGAGCACC 58.711 47.619 0.00 0.00 0.00 5.01
2383 2760 4.558538 AATCCAGAAATAATGCGAGCAC 57.441 40.909 0.00 0.00 0.00 4.40
2384 2761 6.882610 ATAAATCCAGAAATAATGCGAGCA 57.117 33.333 0.00 0.00 0.00 4.26
2385 2762 7.862372 TGAAATAAATCCAGAAATAATGCGAGC 59.138 33.333 0.00 0.00 0.00 5.03
2386 2763 9.390795 CTGAAATAAATCCAGAAATAATGCGAG 57.609 33.333 0.00 0.00 0.00 5.03
2387 2764 8.352201 CCTGAAATAAATCCAGAAATAATGCGA 58.648 33.333 0.00 0.00 0.00 5.10
2388 2765 8.352201 TCCTGAAATAAATCCAGAAATAATGCG 58.648 33.333 0.00 0.00 0.00 4.73
2394 2771 9.807649 CGAAAATCCTGAAATAAATCCAGAAAT 57.192 29.630 0.00 0.00 0.00 2.17
2395 2772 8.250332 CCGAAAATCCTGAAATAAATCCAGAAA 58.750 33.333 0.00 0.00 0.00 2.52
2396 2773 7.630513 GCCGAAAATCCTGAAATAAATCCAGAA 60.631 37.037 0.00 0.00 0.00 3.02
2397 2774 6.183360 GCCGAAAATCCTGAAATAAATCCAGA 60.183 38.462 0.00 0.00 0.00 3.86
2398 2775 5.979517 GCCGAAAATCCTGAAATAAATCCAG 59.020 40.000 0.00 0.00 0.00 3.86
2399 2776 5.449862 CGCCGAAAATCCTGAAATAAATCCA 60.450 40.000 0.00 0.00 0.00 3.41
2400 2777 4.976116 CGCCGAAAATCCTGAAATAAATCC 59.024 41.667 0.00 0.00 0.00 3.01
2401 2778 5.816919 TCGCCGAAAATCCTGAAATAAATC 58.183 37.500 0.00 0.00 0.00 2.17
2402 2779 5.828299 TCGCCGAAAATCCTGAAATAAAT 57.172 34.783 0.00 0.00 0.00 1.40
2403 2780 5.577835 CATCGCCGAAAATCCTGAAATAAA 58.422 37.500 0.00 0.00 0.00 1.40
2404 2781 4.497340 GCATCGCCGAAAATCCTGAAATAA 60.497 41.667 0.00 0.00 0.00 1.40
2405 2782 3.003275 GCATCGCCGAAAATCCTGAAATA 59.997 43.478 0.00 0.00 0.00 1.40
2406 2783 2.223572 GCATCGCCGAAAATCCTGAAAT 60.224 45.455 0.00 0.00 0.00 2.17
2407 2784 1.132262 GCATCGCCGAAAATCCTGAAA 59.868 47.619 0.00 0.00 0.00 2.69
2408 2785 0.732571 GCATCGCCGAAAATCCTGAA 59.267 50.000 0.00 0.00 0.00 3.02
2409 2786 1.428370 CGCATCGCCGAAAATCCTGA 61.428 55.000 0.00 0.00 0.00 3.86
2410 2787 1.010797 CGCATCGCCGAAAATCCTG 60.011 57.895 0.00 0.00 0.00 3.86
2411 2788 3.409856 CGCATCGCCGAAAATCCT 58.590 55.556 0.00 0.00 0.00 3.24
2422 2799 1.699656 CTCCCACTGAAAGCGCATCG 61.700 60.000 11.47 6.82 37.60 3.84
2423 2800 1.372087 CCTCCCACTGAAAGCGCATC 61.372 60.000 11.47 8.39 37.60 3.91
2424 2801 1.377725 CCTCCCACTGAAAGCGCAT 60.378 57.895 11.47 0.00 37.60 4.73
2425 2802 2.032528 CCTCCCACTGAAAGCGCA 59.967 61.111 11.47 0.00 37.60 6.09
2426 2803 1.743252 CTCCTCCCACTGAAAGCGC 60.743 63.158 0.00 0.00 37.60 5.92
2427 2804 0.390472 GTCTCCTCCCACTGAAAGCG 60.390 60.000 0.00 0.00 37.60 4.68
2428 2805 0.390472 CGTCTCCTCCCACTGAAAGC 60.390 60.000 0.00 0.00 37.60 3.51
2429 2806 0.969894 ACGTCTCCTCCCACTGAAAG 59.030 55.000 0.00 0.00 42.29 2.62
2430 2807 1.343465 GAACGTCTCCTCCCACTGAAA 59.657 52.381 0.00 0.00 0.00 2.69
2431 2808 0.966920 GAACGTCTCCTCCCACTGAA 59.033 55.000 0.00 0.00 0.00 3.02
2432 2809 0.898789 GGAACGTCTCCTCCCACTGA 60.899 60.000 8.87 0.00 41.61 3.41
2433 2810 1.592223 GGAACGTCTCCTCCCACTG 59.408 63.158 8.87 0.00 41.61 3.66
2434 2811 4.115270 GGAACGTCTCCTCCCACT 57.885 61.111 8.87 0.00 41.61 4.00
2453 2830 2.338015 TAGGCACCTCGTGGTCGAC 61.338 63.158 7.13 7.13 46.60 4.20
2454 2831 2.034532 TAGGCACCTCGTGGTCGA 59.965 61.111 6.10 0.00 46.60 4.20
2455 2832 2.181021 GTAGGCACCTCGTGGTCG 59.819 66.667 6.10 4.12 46.60 4.79
2456 2833 2.181021 CGTAGGCACCTCGTGGTC 59.819 66.667 6.10 2.10 46.60 4.02
2457 2834 3.379445 CCGTAGGCACCTCGTGGT 61.379 66.667 2.61 2.61 46.14 4.16
2469 2846 7.246311 TCTTGAGATTTACGAAGTTACCGTAG 58.754 38.462 0.00 0.00 37.78 3.51
2470 2847 7.144722 TCTTGAGATTTACGAAGTTACCGTA 57.855 36.000 0.00 0.00 37.78 4.02
2471 2848 6.017400 TCTTGAGATTTACGAAGTTACCGT 57.983 37.500 0.00 0.00 37.78 4.83
2472 2849 6.750501 TCATCTTGAGATTTACGAAGTTACCG 59.249 38.462 0.00 0.00 35.39 4.02
2473 2850 8.649973 ATCATCTTGAGATTTACGAAGTTACC 57.350 34.615 0.00 0.00 35.39 2.85
2476 2853 8.768955 GCATATCATCTTGAGATTTACGAAGTT 58.231 33.333 0.00 0.00 35.39 2.66
2477 2854 7.386299 GGCATATCATCTTGAGATTTACGAAGT 59.614 37.037 0.00 0.00 37.29 3.01
2478 2855 7.411264 CGGCATATCATCTTGAGATTTACGAAG 60.411 40.741 0.00 0.00 31.21 3.79
2479 2856 6.366061 CGGCATATCATCTTGAGATTTACGAA 59.634 38.462 0.00 0.00 31.21 3.85
2480 2857 5.863935 CGGCATATCATCTTGAGATTTACGA 59.136 40.000 0.00 0.00 31.21 3.43
2481 2858 5.062683 CCGGCATATCATCTTGAGATTTACG 59.937 44.000 0.00 0.00 31.21 3.18
2482 2859 5.163814 GCCGGCATATCATCTTGAGATTTAC 60.164 44.000 24.80 0.00 31.21 2.01
2483 2860 4.937620 GCCGGCATATCATCTTGAGATTTA 59.062 41.667 24.80 0.00 31.21 1.40
2484 2861 3.755378 GCCGGCATATCATCTTGAGATTT 59.245 43.478 24.80 0.00 31.21 2.17
2485 2862 3.008813 AGCCGGCATATCATCTTGAGATT 59.991 43.478 31.54 0.00 31.21 2.40
2486 2863 2.570752 AGCCGGCATATCATCTTGAGAT 59.429 45.455 31.54 0.00 34.56 2.75
2487 2864 1.973515 AGCCGGCATATCATCTTGAGA 59.026 47.619 31.54 0.00 0.00 3.27
2488 2865 2.289257 TGAGCCGGCATATCATCTTGAG 60.289 50.000 31.54 0.00 0.00 3.02
2489 2866 1.693606 TGAGCCGGCATATCATCTTGA 59.306 47.619 31.54 0.00 0.00 3.02
2490 2867 2.074576 CTGAGCCGGCATATCATCTTG 58.925 52.381 31.54 7.95 0.00 3.02
2491 2868 1.696336 ACTGAGCCGGCATATCATCTT 59.304 47.619 31.54 3.33 0.00 2.40
2492 2869 1.274728 GACTGAGCCGGCATATCATCT 59.725 52.381 31.54 11.40 0.00 2.90
2493 2870 1.274728 AGACTGAGCCGGCATATCATC 59.725 52.381 31.54 19.98 0.00 2.92
2494 2871 1.346062 AGACTGAGCCGGCATATCAT 58.654 50.000 31.54 13.17 0.00 2.45
2495 2872 1.123077 AAGACTGAGCCGGCATATCA 58.877 50.000 31.54 22.44 0.00 2.15
2496 2873 2.139118 GAAAGACTGAGCCGGCATATC 58.861 52.381 31.54 18.63 0.00 1.63
2497 2874 1.539065 CGAAAGACTGAGCCGGCATAT 60.539 52.381 31.54 8.11 0.00 1.78
2498 2875 0.179111 CGAAAGACTGAGCCGGCATA 60.179 55.000 31.54 16.21 0.00 3.14
2499 2876 1.448540 CGAAAGACTGAGCCGGCAT 60.449 57.895 31.54 14.28 0.00 4.40
2500 2877 2.048222 CGAAAGACTGAGCCGGCA 60.048 61.111 31.54 7.98 0.00 5.69
2501 2878 2.815647 CCGAAAGACTGAGCCGGC 60.816 66.667 21.89 21.89 33.47 6.13
2502 2879 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
2503 2880 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
2504 2881 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
2505 2882 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
2506 2883 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
2507 2884 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
2508 2885 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
2509 2886 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
2510 2887 2.961526 TATGAGCACCTCCGAAAGAC 57.038 50.000 0.00 0.00 0.00 3.01
2511 2888 2.168521 CCTTATGAGCACCTCCGAAAGA 59.831 50.000 0.00 0.00 0.00 2.52
2512 2889 2.555199 CCTTATGAGCACCTCCGAAAG 58.445 52.381 0.00 0.00 0.00 2.62
2513 2890 1.209504 CCCTTATGAGCACCTCCGAAA 59.790 52.381 0.00 0.00 0.00 3.46
2514 2891 0.830648 CCCTTATGAGCACCTCCGAA 59.169 55.000 0.00 0.00 0.00 4.30
2515 2892 0.325296 ACCCTTATGAGCACCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
2516 2893 1.341531 CTACCCTTATGAGCACCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
2517 2894 1.694696 CCTACCCTTATGAGCACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
2518 2895 1.694696 CCCTACCCTTATGAGCACCTC 59.305 57.143 0.00 0.00 0.00 3.85
2519 2896 1.009675 ACCCTACCCTTATGAGCACCT 59.990 52.381 0.00 0.00 0.00 4.00
2520 2897 1.508256 ACCCTACCCTTATGAGCACC 58.492 55.000 0.00 0.00 0.00 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.