Multiple sequence alignment - TraesCS1B01G183800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G183800 chr1B 100.000 6943 0 0 1 6943 330503636 330510578 0.000000e+00 12822.0
1 TraesCS1B01G183800 chr1B 94.146 205 11 1 2232 2436 255505595 255505392 1.880000e-80 311.0
2 TraesCS1B01G183800 chr1B 89.655 58 6 0 3586 3643 330507093 330507150 2.690000e-09 75.0
3 TraesCS1B01G183800 chr1B 89.655 58 6 0 3458 3515 330507221 330507278 2.690000e-09 75.0
4 TraesCS1B01G183800 chr1A 96.774 3255 71 11 2423 5645 300108252 300111504 0.000000e+00 5398.0
5 TraesCS1B01G183800 chr1A 94.024 1640 69 11 1 1630 300106058 300107678 0.000000e+00 2459.0
6 TraesCS1B01G183800 chr1A 88.007 567 62 3 6153 6714 300116147 300116712 0.000000e+00 665.0
7 TraesCS1B01G183800 chr1A 92.132 394 20 6 1860 2243 300107873 300108265 4.740000e-151 545.0
8 TraesCS1B01G183800 chr1A 84.815 270 25 6 5903 6157 300111692 300111960 2.480000e-64 257.0
9 TraesCS1B01G183800 chr1A 88.718 195 3 4 5676 5851 300111505 300111699 3.260000e-53 220.0
10 TraesCS1B01G183800 chr1A 82.787 244 37 2 6477 6715 300116770 300117013 5.460000e-51 213.0
11 TraesCS1B01G183800 chr1A 88.550 131 6 4 1680 1803 300107685 300107813 4.340000e-32 150.0
12 TraesCS1B01G183800 chr1A 88.785 107 10 2 3639 3744 300109384 300109489 5.650000e-26 130.0
13 TraesCS1B01G183800 chr1A 89.655 58 6 0 3586 3643 300109287 300109344 2.690000e-09 75.0
14 TraesCS1B01G183800 chr1D 96.834 2495 55 9 2431 4919 247302644 247300168 0.000000e+00 4148.0
15 TraesCS1B01G183800 chr1D 94.317 1654 74 11 9 1654 247305071 247303430 0.000000e+00 2516.0
16 TraesCS1B01G183800 chr1D 95.908 1173 25 4 4915 6066 247300089 247298919 0.000000e+00 1879.0
17 TraesCS1B01G183800 chr1D 88.000 750 71 11 6058 6789 247294754 247294006 0.000000e+00 869.0
18 TraesCS1B01G183800 chr1D 92.031 389 23 7 1860 2243 247303024 247302639 2.200000e-149 540.0
19 TraesCS1B01G183800 chr1D 89.640 222 14 1 1652 1864 247303272 247303051 2.470000e-69 274.0
20 TraesCS1B01G183800 chr1D 96.296 135 4 1 6809 6943 320973492 320973625 3.260000e-53 220.0
21 TraesCS1B01G183800 chr1D 90.654 107 8 2 3639 3744 247301521 247301416 2.610000e-29 141.0
22 TraesCS1B01G183800 chr1D 89.655 58 6 0 3458 3515 247301490 247301433 2.690000e-09 75.0
23 TraesCS1B01G183800 chr1D 89.655 58 6 0 3586 3643 247301618 247301561 2.690000e-09 75.0
24 TraesCS1B01G183800 chr4B 88.889 702 68 7 6045 6738 603166896 603166197 0.000000e+00 856.0
25 TraesCS1B01G183800 chr4D 90.344 611 54 3 6133 6738 477578077 477577467 0.000000e+00 797.0
26 TraesCS1B01G183800 chr4D 96.410 195 7 0 2237 2431 485227639 485227445 8.690000e-84 322.0
27 TraesCS1B01G183800 chr4D 86.022 93 10 2 5960 6052 477578245 477578156 5.730000e-16 97.1
28 TraesCS1B01G183800 chr4A 87.607 702 67 9 6048 6743 684503807 684503120 0.000000e+00 797.0
29 TraesCS1B01G183800 chr4A 87.234 94 9 1 5960 6053 684503932 684503842 3.430000e-18 104.0
30 TraesCS1B01G183800 chr6B 88.982 599 61 3 6145 6738 15927815 15928413 0.000000e+00 736.0
31 TraesCS1B01G183800 chr6B 95.918 196 8 0 2241 2436 289689643 289689448 1.120000e-82 318.0
32 TraesCS1B01G183800 chr6B 95.588 136 6 0 6808 6943 183044713 183044578 1.170000e-52 219.0
33 TraesCS1B01G183800 chr6D 87.722 619 63 6 6110 6723 8742963 8743573 0.000000e+00 710.0
34 TraesCS1B01G183800 chr6D 77.990 209 31 7 5846 6053 8757650 8757844 4.400000e-22 117.0
35 TraesCS1B01G183800 chrUn 87.954 606 60 6 6110 6710 357590244 357590841 0.000000e+00 702.0
36 TraesCS1B01G183800 chrUn 87.789 606 61 6 6110 6710 461056754 461056157 0.000000e+00 697.0
37 TraesCS1B01G183800 chr7B 95.169 207 6 4 2234 2437 168758393 168758188 2.420000e-84 324.0
38 TraesCS1B01G183800 chr5B 93.868 212 9 4 2237 2445 434671550 434671340 4.040000e-82 316.0
39 TraesCS1B01G183800 chr5B 94.853 136 6 1 6808 6943 82464056 82463922 1.960000e-50 211.0
40 TraesCS1B01G183800 chr3D 95.477 199 8 1 2241 2439 295053452 295053649 4.040000e-82 316.0
41 TraesCS1B01G183800 chr3A 95.477 199 8 1 2241 2439 80947651 80947848 4.040000e-82 316.0
42 TraesCS1B01G183800 chr3A 94.853 136 6 1 6808 6943 725496167 725496033 1.960000e-50 211.0
43 TraesCS1B01G183800 chr2D 95.477 199 8 1 2241 2439 409342527 409342330 4.040000e-82 316.0
44 TraesCS1B01G183800 chr2D 94.175 206 9 3 2240 2444 170837179 170836976 1.880000e-80 311.0
45 TraesCS1B01G183800 chr2D 95.588 136 6 0 6808 6943 599938853 599938718 1.170000e-52 219.0
46 TraesCS1B01G183800 chr3B 95.588 136 5 1 6809 6943 690108608 690108743 4.220000e-52 217.0
47 TraesCS1B01G183800 chr2B 96.183 131 5 0 6813 6943 13428374 13428244 1.520000e-51 215.0
48 TraesCS1B01G183800 chr7A 95.522 134 5 1 6810 6943 663965038 663965170 5.460000e-51 213.0
49 TraesCS1B01G183800 chr5A 94.853 136 6 1 6808 6943 110380432 110380298 1.960000e-50 211.0
50 TraesCS1B01G183800 chr6A 82.464 211 23 6 5846 6055 9182195 9181998 9.260000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G183800 chr1B 330503636 330510578 6942 False 4324.00 12822 93.103333 1 6943 3 chr1B.!!$F1 6942
1 TraesCS1B01G183800 chr1A 300106058 300111960 5902 False 1154.25 5398 90.431625 1 6157 8 chr1A.!!$F1 6156
2 TraesCS1B01G183800 chr1A 300116147 300117013 866 False 439.00 665 85.397000 6153 6715 2 chr1A.!!$F2 562
3 TraesCS1B01G183800 chr1D 247298919 247305071 6152 True 1206.00 4148 92.336750 9 6066 8 chr1D.!!$R2 6057
4 TraesCS1B01G183800 chr1D 247294006 247294754 748 True 869.00 869 88.000000 6058 6789 1 chr1D.!!$R1 731
5 TraesCS1B01G183800 chr4B 603166197 603166896 699 True 856.00 856 88.889000 6045 6738 1 chr4B.!!$R1 693
6 TraesCS1B01G183800 chr4D 477577467 477578245 778 True 447.05 797 88.183000 5960 6738 2 chr4D.!!$R2 778
7 TraesCS1B01G183800 chr4A 684503120 684503932 812 True 450.50 797 87.420500 5960 6743 2 chr4A.!!$R1 783
8 TraesCS1B01G183800 chr6B 15927815 15928413 598 False 736.00 736 88.982000 6145 6738 1 chr6B.!!$F1 593
9 TraesCS1B01G183800 chr6D 8742963 8743573 610 False 710.00 710 87.722000 6110 6723 1 chr6D.!!$F1 613
10 TraesCS1B01G183800 chrUn 357590244 357590841 597 False 702.00 702 87.954000 6110 6710 1 chrUn.!!$F1 600
11 TraesCS1B01G183800 chrUn 461056157 461056754 597 True 697.00 697 87.789000 6110 6710 1 chrUn.!!$R1 600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
179 180 0.256464 CTCCTCCACCTCCTCTACGT 59.744 60.0 0.00 0.00 0.00 3.57 F
364 365 0.825010 TATCTACGGCCCCGAACTCC 60.825 60.0 14.44 0.00 42.83 3.85 F
1459 1471 0.107800 ACTGCTCAGGCTATGCTGTG 60.108 55.0 17.68 8.94 37.46 3.66 F
2381 2605 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.0 0.00 0.00 38.52 4.09 F
3336 3560 0.108138 AGGACGCTGTGGAATGTAGC 60.108 55.0 0.00 0.00 0.00 3.58 F
4137 4362 0.975556 TCTGATACTCCAAGCCGCCA 60.976 55.0 0.00 0.00 0.00 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1010 1012 0.101040 TTATACGCCAGAACGGACGG 59.899 55.000 0.00 0.0 38.24 4.79 R
2362 2586 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.0 42.47 2.43 R
2388 2612 0.230769 CTAAGCGAGCGCATAAGCAC 59.769 55.000 17.68 0.0 44.88 4.40 R
4275 4500 1.198713 AGATCGTGGTTCAGAGCCAT 58.801 50.000 9.55 0.0 38.40 4.40 R
4862 5120 1.375268 GTGTGCCTCAGCTCAGGTC 60.375 63.158 5.21 0.0 42.79 3.85 R
5973 6336 1.629013 TAGCACGCATGAGAAGTTCG 58.371 50.000 2.50 0.0 0.00 3.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
91 92 5.622233 CGTTGTGTCTAGATTCACCATCTCA 60.622 44.000 10.15 0.00 41.80 3.27
131 132 0.890683 CCCCATGAAGTCAGCAAACC 59.109 55.000 0.00 0.00 0.00 3.27
157 158 1.308069 CCTCCAATTGGTCACCGCTG 61.308 60.000 23.76 5.68 36.34 5.18
175 176 3.114390 CCCTCCTCCACCTCCTCT 58.886 66.667 0.00 0.00 0.00 3.69
179 180 0.256464 CTCCTCCACCTCCTCTACGT 59.744 60.000 0.00 0.00 0.00 3.57
181 182 0.256464 CCTCCACCTCCTCTACGTCT 59.744 60.000 0.00 0.00 0.00 4.18
183 184 1.210967 CTCCACCTCCTCTACGTCTCT 59.789 57.143 0.00 0.00 0.00 3.10
209 210 1.263217 GTGGCGGTAACAACACTTCAG 59.737 52.381 0.00 0.00 39.14 3.02
212 213 1.535462 GCGGTAACAACACTTCAGCAT 59.465 47.619 0.00 0.00 0.00 3.79
281 282 2.484287 ATTGGGGTGGAAGCTGACGG 62.484 60.000 0.00 0.00 0.00 4.79
316 317 1.248785 CCTCCTTGTCGTCCTCGGAA 61.249 60.000 0.00 0.00 37.69 4.30
324 325 1.227263 CGTCCTCGGAATCGCCAAT 60.227 57.895 0.00 0.00 35.94 3.16
345 346 2.159099 TGAATTCCGCTAGCAAGTCGAT 60.159 45.455 16.45 0.00 0.00 3.59
346 347 3.067601 TGAATTCCGCTAGCAAGTCGATA 59.932 43.478 16.45 0.00 0.00 2.92
349 350 2.505405 TCCGCTAGCAAGTCGATATCT 58.495 47.619 16.45 0.00 0.00 1.98
364 365 0.825010 TATCTACGGCCCCGAACTCC 60.825 60.000 14.44 0.00 42.83 3.85
878 879 4.101790 CGGCCATTTTCGCTGCGT 62.102 61.111 22.48 0.00 0.00 5.24
1010 1012 2.335712 CCGACTGGCCCAAAAGAGC 61.336 63.158 0.00 0.00 0.00 4.09
1030 1032 1.469595 CCGTCCGTTCTGGCGTATAAA 60.470 52.381 0.00 0.00 37.80 1.40
1057 1059 1.092348 GGAATGTAACCGTTGGGCTC 58.908 55.000 0.00 0.00 36.48 4.70
1062 1064 2.518709 TAACCGTTGGGCTCGGGTT 61.519 57.895 10.83 10.83 46.79 4.11
1101 1106 2.391724 TTTGGTCTCTTTCGGCCGCT 62.392 55.000 23.51 0.00 0.00 5.52
1112 1118 4.491409 GGCCGCTTCCCCCTCTTC 62.491 72.222 0.00 0.00 0.00 2.87
1113 1119 3.403558 GCCGCTTCCCCCTCTTCT 61.404 66.667 0.00 0.00 0.00 2.85
1114 1120 2.904131 CCGCTTCCCCCTCTTCTC 59.096 66.667 0.00 0.00 0.00 2.87
1115 1121 2.736826 CCGCTTCCCCCTCTTCTCC 61.737 68.421 0.00 0.00 0.00 3.71
1116 1122 1.990060 CGCTTCCCCCTCTTCTCCA 60.990 63.158 0.00 0.00 0.00 3.86
1117 1123 1.553690 CGCTTCCCCCTCTTCTCCAA 61.554 60.000 0.00 0.00 0.00 3.53
1118 1124 0.922626 GCTTCCCCCTCTTCTCCAAT 59.077 55.000 0.00 0.00 0.00 3.16
1119 1125 2.127708 GCTTCCCCCTCTTCTCCAATA 58.872 52.381 0.00 0.00 0.00 1.90
1120 1126 2.105649 GCTTCCCCCTCTTCTCCAATAG 59.894 54.545 0.00 0.00 0.00 1.73
1287 1294 1.741770 CCCTCTCCTTGGTTTCGCG 60.742 63.158 0.00 0.00 0.00 5.87
1291 1298 0.248012 TCTCCTTGGTTTCGCGCATA 59.752 50.000 8.75 0.00 0.00 3.14
1356 1363 1.007502 CGGTGTGTCCCGTCGTTTA 60.008 57.895 0.00 0.00 43.07 2.01
1361 1368 2.156310 GTGTGTCCCGTCGTTTATGTTC 59.844 50.000 0.00 0.00 0.00 3.18
1391 1398 1.504446 CGGGGTGGTATGTTTTGCG 59.496 57.895 0.00 0.00 0.00 4.85
1392 1399 0.956410 CGGGGTGGTATGTTTTGCGA 60.956 55.000 0.00 0.00 0.00 5.10
1431 1443 2.103538 GGAGTCGCGCGGTGATTA 59.896 61.111 31.69 6.17 0.00 1.75
1459 1471 0.107800 ACTGCTCAGGCTATGCTGTG 60.108 55.000 17.68 8.94 37.46 3.66
1463 1475 1.150567 CTCAGGCTATGCTGTGACGC 61.151 60.000 0.00 0.00 0.00 5.19
1639 1652 5.090652 TGTTCGTCTAGTGATGTTTTTGC 57.909 39.130 0.00 0.00 0.00 3.68
1650 1663 7.054491 AGTGATGTTTTTGCCTGATAAAGTT 57.946 32.000 0.00 0.00 0.00 2.66
1662 1835 6.098017 GCCTGATAAAGTTGTAGTTCGTAGT 58.902 40.000 0.00 0.00 0.00 2.73
1663 1836 6.034683 GCCTGATAAAGTTGTAGTTCGTAGTG 59.965 42.308 0.00 0.00 0.00 2.74
1671 1844 4.579454 TGTAGTTCGTAGTGGATATGCC 57.421 45.455 0.00 0.00 37.10 4.40
1674 1847 2.365617 AGTTCGTAGTGGATATGCCCAG 59.634 50.000 0.00 0.00 36.78 4.45
1688 1861 6.601217 GGATATGCCCAGATTTTTCTATCCTC 59.399 42.308 0.00 0.00 33.61 3.71
1707 1880 1.635663 CTGGTTAACCTCGCAAGCCG 61.636 60.000 24.78 0.00 36.82 5.52
1827 2009 1.723608 CGTGCAAGGTTTGGCTCACA 61.724 55.000 0.00 0.00 0.00 3.58
1840 2022 1.160329 GCTCACACCACAGACCACAC 61.160 60.000 0.00 0.00 0.00 3.82
1844 2026 0.908910 ACACCACAGACCACACAAGA 59.091 50.000 0.00 0.00 0.00 3.02
1867 2049 4.325119 GGAAGTTTAGGGTTCCTCTGTTC 58.675 47.826 0.00 0.00 39.42 3.18
1869 2051 4.893829 AGTTTAGGGTTCCTCTGTTCTC 57.106 45.455 0.00 0.00 34.61 2.87
1870 2052 4.494591 AGTTTAGGGTTCCTCTGTTCTCT 58.505 43.478 0.00 0.00 34.61 3.10
1871 2053 4.528987 AGTTTAGGGTTCCTCTGTTCTCTC 59.471 45.833 0.00 0.00 34.61 3.20
1872 2054 2.704190 AGGGTTCCTCTGTTCTCTCA 57.296 50.000 0.00 0.00 0.00 3.27
1873 2055 2.252714 AGGGTTCCTCTGTTCTCTCAC 58.747 52.381 0.00 0.00 0.00 3.51
1874 2056 2.158234 AGGGTTCCTCTGTTCTCTCACT 60.158 50.000 0.00 0.00 0.00 3.41
1875 2057 2.232696 GGGTTCCTCTGTTCTCTCACTC 59.767 54.545 0.00 0.00 0.00 3.51
1876 2058 2.232696 GGTTCCTCTGTTCTCTCACTCC 59.767 54.545 0.00 0.00 0.00 3.85
1877 2059 1.827681 TCCTCTGTTCTCTCACTCCG 58.172 55.000 0.00 0.00 0.00 4.63
1895 2110 3.942115 CTCCGTAGTCACATCTCTCTTCA 59.058 47.826 0.00 0.00 0.00 3.02
1901 2116 6.405286 CGTAGTCACATCTCTCTTCAATCCTT 60.405 42.308 0.00 0.00 0.00 3.36
1984 2200 9.465199 TTTAGAACTTATATACCAAACCCCAAC 57.535 33.333 0.00 0.00 0.00 3.77
2011 2227 1.453379 CTCCCATCCTTGCTGCAGG 60.453 63.158 17.12 4.57 34.86 4.85
2088 2305 6.236409 AGAGACTTTGCATCTGAAATTCTGA 58.764 36.000 5.07 5.07 0.00 3.27
2150 2373 4.738740 GGACTAGATTTTATCGGTGTGTCG 59.261 45.833 0.00 0.00 0.00 4.35
2227 2451 7.898819 GCTATTTTCTACGTTTTCTTAGTGCTC 59.101 37.037 0.00 0.00 0.00 4.26
2244 2468 9.856488 CTTAGTGCTCTACTGTACTTTTTATCA 57.144 33.333 0.00 0.00 40.65 2.15
2248 2472 9.804758 GTGCTCTACTGTACTTTTTATCATAGT 57.195 33.333 0.00 0.00 0.00 2.12
2274 2498 5.447624 AAAAAGCGCTAGGTGTTAATTGT 57.552 34.783 12.05 0.00 0.00 2.71
2275 2499 4.419522 AAAGCGCTAGGTGTTAATTGTG 57.580 40.909 12.05 0.00 0.00 3.33
2276 2500 1.737793 AGCGCTAGGTGTTAATTGTGC 59.262 47.619 8.99 0.00 0.00 4.57
2277 2501 1.529010 GCGCTAGGTGTTAATTGTGCG 60.529 52.381 0.00 0.00 44.10 5.34
2278 2502 1.730064 CGCTAGGTGTTAATTGTGCGT 59.270 47.619 0.00 0.00 37.80 5.24
2279 2503 2.158841 CGCTAGGTGTTAATTGTGCGTT 59.841 45.455 0.00 0.00 37.80 4.84
2280 2504 3.364565 CGCTAGGTGTTAATTGTGCGTTT 60.365 43.478 0.00 0.00 37.80 3.60
2281 2505 4.542735 GCTAGGTGTTAATTGTGCGTTTT 58.457 39.130 0.00 0.00 0.00 2.43
2282 2506 4.381566 GCTAGGTGTTAATTGTGCGTTTTG 59.618 41.667 0.00 0.00 0.00 2.44
2283 2507 3.120041 AGGTGTTAATTGTGCGTTTTGC 58.880 40.909 0.00 0.00 46.70 3.68
2284 2508 2.219903 GGTGTTAATTGTGCGTTTTGCC 59.780 45.455 0.00 0.00 45.60 4.52
2285 2509 2.860735 GTGTTAATTGTGCGTTTTGCCA 59.139 40.909 0.00 0.00 45.60 4.92
2286 2510 2.860735 TGTTAATTGTGCGTTTTGCCAC 59.139 40.909 0.00 0.00 45.60 5.01
2287 2511 2.141535 TAATTGTGCGTTTTGCCACC 57.858 45.000 0.00 0.00 45.60 4.61
2288 2512 0.873743 AATTGTGCGTTTTGCCACCG 60.874 50.000 0.00 0.00 45.60 4.94
2289 2513 4.560856 TGTGCGTTTTGCCACCGC 62.561 61.111 0.00 0.00 45.60 5.68
2292 2516 4.700365 GCGTTTTGCCACCGCCTC 62.700 66.667 0.00 0.00 41.50 4.70
2293 2517 4.383602 CGTTTTGCCACCGCCTCG 62.384 66.667 0.00 0.00 0.00 4.63
2294 2518 4.700365 GTTTTGCCACCGCCTCGC 62.700 66.667 0.00 0.00 0.00 5.03
2305 2529 3.081993 GCCTCGCGCTTTACTGAC 58.918 61.111 5.56 0.00 0.00 3.51
2306 2530 2.453638 GCCTCGCGCTTTACTGACC 61.454 63.158 5.56 0.00 0.00 4.02
2307 2531 1.080093 CCTCGCGCTTTACTGACCA 60.080 57.895 5.56 0.00 0.00 4.02
2308 2532 0.669318 CCTCGCGCTTTACTGACCAA 60.669 55.000 5.56 0.00 0.00 3.67
2309 2533 1.144969 CTCGCGCTTTACTGACCAAA 58.855 50.000 5.56 0.00 0.00 3.28
2310 2534 1.126846 CTCGCGCTTTACTGACCAAAG 59.873 52.381 5.56 0.00 36.32 2.77
2313 2537 3.384702 GCTTTACTGACCAAAGCGC 57.615 52.632 0.00 0.00 45.88 5.92
2314 2538 0.591170 GCTTTACTGACCAAAGCGCA 59.409 50.000 11.47 0.00 45.88 6.09
2315 2539 1.200020 GCTTTACTGACCAAAGCGCAT 59.800 47.619 11.47 0.00 45.88 4.73
2316 2540 2.855180 CTTTACTGACCAAAGCGCATG 58.145 47.619 11.47 8.38 0.00 4.06
2317 2541 0.521291 TTACTGACCAAAGCGCATGC 59.479 50.000 11.47 7.91 43.24 4.06
2331 2555 3.614159 CGCATGCTTATGTGCAGTTAT 57.386 42.857 17.13 0.00 46.71 1.89
2332 2556 3.294102 CGCATGCTTATGTGCAGTTATG 58.706 45.455 17.13 0.00 46.71 1.90
2346 2570 4.864916 CAGTTATGCACAGATTAAGCGT 57.135 40.909 0.00 0.00 0.00 5.07
2347 2571 5.966636 CAGTTATGCACAGATTAAGCGTA 57.033 39.130 0.00 0.00 0.00 4.42
2348 2572 5.967469 CAGTTATGCACAGATTAAGCGTAG 58.033 41.667 0.00 0.00 32.03 3.51
2349 2573 5.520288 CAGTTATGCACAGATTAAGCGTAGT 59.480 40.000 0.00 0.00 32.03 2.73
2350 2574 6.036083 CAGTTATGCACAGATTAAGCGTAGTT 59.964 38.462 0.00 0.00 32.03 2.24
2351 2575 7.222031 CAGTTATGCACAGATTAAGCGTAGTTA 59.778 37.037 0.00 0.00 32.03 2.24
2352 2576 7.926555 AGTTATGCACAGATTAAGCGTAGTTAT 59.073 33.333 0.00 0.00 32.03 1.89
2353 2577 5.966636 TGCACAGATTAAGCGTAGTTATG 57.033 39.130 0.00 0.00 0.00 1.90
2354 2578 4.270084 TGCACAGATTAAGCGTAGTTATGC 59.730 41.667 0.00 0.00 38.47 3.14
2355 2579 4.606232 GCACAGATTAAGCGTAGTTATGCG 60.606 45.833 0.00 0.00 42.84 4.73
2373 2597 1.201332 GCAATGCGTTTTGCCAACG 59.799 52.632 12.66 12.66 44.94 4.10
2378 2602 4.838959 CGTTTTGCCAACGCCTAG 57.161 55.556 5.44 0.00 36.82 3.02
2379 2603 2.240230 CGTTTTGCCAACGCCTAGA 58.760 52.632 5.44 0.00 36.82 2.43
2380 2604 0.165944 CGTTTTGCCAACGCCTAGAG 59.834 55.000 5.44 0.00 36.82 2.43
2381 2605 0.109735 GTTTTGCCAACGCCTAGAGC 60.110 55.000 0.00 0.00 38.52 4.09
2382 2606 1.241315 TTTTGCCAACGCCTAGAGCC 61.241 55.000 0.00 0.00 38.78 4.70
2383 2607 2.124507 TTTGCCAACGCCTAGAGCCT 62.125 55.000 0.00 0.00 38.78 4.58
2384 2608 1.261938 TTGCCAACGCCTAGAGCCTA 61.262 55.000 0.00 0.00 38.78 3.93
2385 2609 1.068250 GCCAACGCCTAGAGCCTAG 59.932 63.158 0.00 3.06 38.78 3.02
2386 2610 1.742768 CCAACGCCTAGAGCCTAGG 59.257 63.158 18.85 18.85 38.78 3.02
2397 2621 3.334463 GCCTAGGCGTGCTTATGC 58.666 61.111 20.16 0.00 40.20 3.14
2398 2622 2.598632 GCCTAGGCGTGCTTATGCG 61.599 63.158 20.16 0.00 43.34 4.73
2404 2628 3.257561 CGTGCTTATGCGCTCGCT 61.258 61.111 9.73 3.95 46.58 4.93
2405 2629 2.802667 CGTGCTTATGCGCTCGCTT 61.803 57.895 9.73 11.44 46.58 4.68
2406 2630 1.479420 CGTGCTTATGCGCTCGCTTA 61.479 55.000 9.73 10.44 46.58 3.09
2407 2631 0.230769 GTGCTTATGCGCTCGCTTAG 59.769 55.000 9.73 10.28 45.43 2.18
2408 2632 0.875908 TGCTTATGCGCTCGCTTAGG 60.876 55.000 9.73 13.82 43.34 2.69
2409 2633 1.856012 CTTATGCGCTCGCTTAGGC 59.144 57.895 9.73 0.00 42.51 3.93
2472 2696 2.877043 CTTGTATGCAAGCCCCATTC 57.123 50.000 10.75 0.00 44.54 2.67
2579 2803 0.395312 TGGTCGAGGGGAAAAGTGTC 59.605 55.000 0.00 0.00 0.00 3.67
2600 2824 2.417719 CAAGTTGACCTCGAGAAAGGG 58.582 52.381 15.71 0.00 41.04 3.95
2627 2851 9.403110 CTTAATCAAATGCCTAATGATAGCAAC 57.597 33.333 0.00 0.00 33.60 4.17
2843 3067 7.706281 AACAGACGATGAAGATGATAATGAC 57.294 36.000 0.00 0.00 0.00 3.06
2844 3068 6.809869 ACAGACGATGAAGATGATAATGACA 58.190 36.000 0.00 0.00 0.00 3.58
2962 3186 1.407989 GCTGCCTAGCCTTGATTGTCT 60.408 52.381 0.00 0.00 44.33 3.41
2965 3189 4.712476 CTGCCTAGCCTTGATTGTCTATT 58.288 43.478 0.00 0.00 0.00 1.73
3336 3560 0.108138 AGGACGCTGTGGAATGTAGC 60.108 55.000 0.00 0.00 0.00 3.58
3366 3590 1.404391 GAGTCTCCAGCCATTGCAATG 59.596 52.381 28.91 28.91 41.13 2.82
3429 3653 9.482627 GGATCTCATCATAAGGTACTAAACTTG 57.517 37.037 0.00 0.00 38.49 3.16
3690 3914 4.678044 CGCTGTATGACATGTCCTGTAACT 60.678 45.833 22.85 2.16 38.54 2.24
3695 3919 3.664107 TGACATGTCCTGTAACTTGCTC 58.336 45.455 22.85 0.00 38.54 4.26
3736 3961 9.712305 CTCTCAACTCTAGTTCCTTATTTTTCA 57.288 33.333 0.00 0.00 35.83 2.69
3755 3980 8.940768 TTTTTCATCTCTAACAACCCTTTTTG 57.059 30.769 0.00 0.00 0.00 2.44
3761 3986 3.955551 TCTAACAACCCTTTTTGTGGTCC 59.044 43.478 0.00 0.00 39.70 4.46
4096 4321 3.969287 AGCTCTAACAAGCATGTCTCA 57.031 42.857 0.00 0.00 45.00 3.27
4107 4332 2.369860 AGCATGTCTCAGTTCCAGTCAA 59.630 45.455 0.00 0.00 0.00 3.18
4137 4362 0.975556 TCTGATACTCCAAGCCGCCA 60.976 55.000 0.00 0.00 0.00 5.69
4176 4401 4.461081 TGAAAACAGTACACCAAAGCAAGT 59.539 37.500 0.00 0.00 0.00 3.16
4275 4500 5.465390 CGAAACATGAAACCTCAAGTAGACA 59.535 40.000 0.00 0.00 32.42 3.41
4362 4587 2.910199 TGATGAAAGCCCTTCTGATCG 58.090 47.619 0.00 0.00 34.86 3.69
4399 4624 3.328535 AAACTTGACAAGGATGGGGTT 57.671 42.857 19.16 0.85 0.00 4.11
4454 4706 5.610398 GAAAATGCCTTTTCCCAGAAGAAA 58.390 37.500 14.27 0.00 42.89 2.52
4478 4730 7.368480 ACATTTACTTTTACCGTGGTATGTC 57.632 36.000 0.00 0.00 0.00 3.06
4511 4763 8.995027 TCTTATGCCTGGATATATGTGTTTTT 57.005 30.769 0.00 0.00 0.00 1.94
4613 4865 8.497554 GTTTGCTGCATTCTCATTCATTTAAAA 58.502 29.630 1.84 0.00 0.00 1.52
4862 5120 9.923143 AAATGCCAATTATCTTGTGATATCATG 57.077 29.630 9.02 3.08 35.36 3.07
4902 5160 1.068333 GCAGGGTGTAAATGCACTGTG 60.068 52.381 2.76 2.76 39.75 3.66
5206 5547 2.703536 TGCTCCAACCTTTCTGTACTCA 59.296 45.455 0.00 0.00 0.00 3.41
5287 5628 8.307483 CACTTAACAGGAGAGATAGAAGAACAA 58.693 37.037 0.00 0.00 0.00 2.83
5658 6002 6.430925 ACTGAAATACTAAGCATCAACAAGCA 59.569 34.615 0.00 0.00 0.00 3.91
5803 6166 5.468746 GTGTTAACTGTCTTTGGTATCTGCA 59.531 40.000 7.22 0.00 0.00 4.41
5944 6307 2.153645 TCTTTATGCACCACACTGCTG 58.846 47.619 0.00 0.00 38.07 4.41
5973 6336 1.279840 GCTTGAAGGTCACGCACAC 59.720 57.895 2.19 0.00 40.80 3.82
6015 6378 3.282021 ACCATAGGCTGCACTGTTTATG 58.718 45.455 0.50 0.16 0.00 1.90
6240 6643 1.425412 GCGTCGACTATGTTGTTGGT 58.575 50.000 14.70 0.00 0.00 3.67
6282 6685 0.815095 TCGTCGTCACAGCCATACAT 59.185 50.000 0.00 0.00 0.00 2.29
6329 6732 1.803334 GTACACGGAGTTGCCATTGA 58.197 50.000 0.00 0.00 41.61 2.57
6351 6754 3.517100 ACAGTGATCTTGATACAGTGCCT 59.483 43.478 0.00 0.00 38.17 4.75
6468 6871 0.251341 TCCTTGCCCTTCTCAAAGCC 60.251 55.000 0.00 0.00 0.00 4.35
6496 6899 0.817634 TCAAGACGGCCTTTGTGGTG 60.818 55.000 0.00 0.00 38.35 4.17
6551 6954 0.318441 TCTCTTGCCGTCCTCACAAG 59.682 55.000 0.00 0.00 41.70 3.16
6584 6987 0.250467 GCTCTTCTCACAGTTGCCCA 60.250 55.000 0.00 0.00 0.00 5.36
6585 6988 1.805869 CTCTTCTCACAGTTGCCCAG 58.194 55.000 0.00 0.00 0.00 4.45
6587 6990 0.535780 CTTCTCACAGTTGCCCAGCA 60.536 55.000 0.00 0.00 36.47 4.41
6608 7016 0.320421 GAAGGTAGCCACTTGCACGA 60.320 55.000 0.00 0.00 44.83 4.35
6646 7054 1.536072 GCGAAGTGAGGATGCGATGTA 60.536 52.381 0.00 0.00 0.00 2.29
6698 7106 1.673168 CCATGGTGGCTAGAGCTTTC 58.327 55.000 2.57 0.00 41.70 2.62
6715 7123 1.108776 TTCGCGGTAGCCATCTTAGT 58.891 50.000 6.13 0.00 41.18 2.24
6717 7125 1.202371 TCGCGGTAGCCATCTTAGTTG 60.202 52.381 6.13 0.00 41.18 3.16
6740 7148 4.513318 GCTGAAAACTCTTGAACTGTAGCT 59.487 41.667 0.00 0.00 0.00 3.32
6789 7210 3.496884 TCTTGTTGATTGCGTGGTTAGAC 59.503 43.478 0.00 0.00 0.00 2.59
6790 7211 2.147958 TGTTGATTGCGTGGTTAGACC 58.852 47.619 0.00 0.00 39.22 3.85
6791 7212 2.224426 TGTTGATTGCGTGGTTAGACCT 60.224 45.455 0.00 0.00 39.58 3.85
6793 7214 1.621317 TGATTGCGTGGTTAGACCTGA 59.379 47.619 0.00 0.00 39.58 3.86
6794 7215 2.271800 GATTGCGTGGTTAGACCTGAG 58.728 52.381 0.00 0.00 39.58 3.35
6795 7216 1.334160 TTGCGTGGTTAGACCTGAGA 58.666 50.000 0.00 0.00 39.58 3.27
6796 7217 0.888619 TGCGTGGTTAGACCTGAGAG 59.111 55.000 0.00 0.00 39.58 3.20
6797 7218 1.174783 GCGTGGTTAGACCTGAGAGA 58.825 55.000 0.00 0.00 39.58 3.10
6799 7220 1.133407 CGTGGTTAGACCTGAGAGAGC 59.867 57.143 0.00 0.00 39.58 4.09
6800 7221 2.452505 GTGGTTAGACCTGAGAGAGCT 58.547 52.381 0.00 0.00 39.58 4.09
6801 7222 2.165437 GTGGTTAGACCTGAGAGAGCTG 59.835 54.545 0.00 0.00 39.58 4.24
6802 7223 1.136110 GGTTAGACCTGAGAGAGCTGC 59.864 57.143 0.00 0.00 34.73 5.25
6803 7224 1.821753 GTTAGACCTGAGAGAGCTGCA 59.178 52.381 1.02 0.00 0.00 4.41
6807 7228 2.187424 CTGAGAGAGCTGCAGGGC 59.813 66.667 17.12 2.13 0.00 5.19
6809 7230 3.456365 GAGAGAGCTGCAGGGCGA 61.456 66.667 17.12 0.00 37.29 5.54
6810 7231 3.429080 GAGAGAGCTGCAGGGCGAG 62.429 68.421 17.12 0.00 37.29 5.03
6813 7234 3.768922 GAGCTGCAGGGCGAGAGT 61.769 66.667 17.12 0.00 37.29 3.24
6814 7235 4.079850 AGCTGCAGGGCGAGAGTG 62.080 66.667 17.12 0.00 37.29 3.51
6816 7237 3.385384 CTGCAGGGCGAGAGTGGA 61.385 66.667 5.57 0.00 0.00 4.02
6817 7238 2.685017 TGCAGGGCGAGAGTGGAT 60.685 61.111 0.00 0.00 0.00 3.41
6818 7239 2.249413 CTGCAGGGCGAGAGTGGATT 62.249 60.000 5.57 0.00 0.00 3.01
6820 7241 0.678048 GCAGGGCGAGAGTGGATTTT 60.678 55.000 0.00 0.00 0.00 1.82
6821 7242 1.826385 CAGGGCGAGAGTGGATTTTT 58.174 50.000 0.00 0.00 0.00 1.94
6822 7243 1.470098 CAGGGCGAGAGTGGATTTTTG 59.530 52.381 0.00 0.00 0.00 2.44
6823 7244 0.811281 GGGCGAGAGTGGATTTTTGG 59.189 55.000 0.00 0.00 0.00 3.28
6824 7245 1.613255 GGGCGAGAGTGGATTTTTGGA 60.613 52.381 0.00 0.00 0.00 3.53
6825 7246 2.159382 GGCGAGAGTGGATTTTTGGAA 58.841 47.619 0.00 0.00 0.00 3.53
6826 7247 2.095212 GGCGAGAGTGGATTTTTGGAAC 60.095 50.000 0.00 0.00 0.00 3.62
6827 7248 2.552315 GCGAGAGTGGATTTTTGGAACA 59.448 45.455 0.00 0.00 0.00 3.18
6828 7249 3.609409 GCGAGAGTGGATTTTTGGAACAC 60.609 47.826 0.00 0.00 39.29 3.32
6829 7250 3.363970 CGAGAGTGGATTTTTGGAACACG 60.364 47.826 0.00 0.00 39.29 4.49
6830 7251 2.884639 AGAGTGGATTTTTGGAACACGG 59.115 45.455 0.00 0.00 39.29 4.94
6831 7252 1.960689 AGTGGATTTTTGGAACACGGG 59.039 47.619 0.00 0.00 39.29 5.28
6833 7254 1.683917 TGGATTTTTGGAACACGGGTG 59.316 47.619 0.00 0.00 39.29 4.61
6835 7256 2.885894 GGATTTTTGGAACACGGGTGTA 59.114 45.455 4.68 0.00 44.13 2.90
6836 7257 3.508402 GGATTTTTGGAACACGGGTGTAT 59.492 43.478 4.68 0.00 44.13 2.29
6837 7258 4.021807 GGATTTTTGGAACACGGGTGTATT 60.022 41.667 4.68 0.00 44.13 1.89
6838 7259 3.992260 TTTTGGAACACGGGTGTATTG 57.008 42.857 4.68 0.00 44.13 1.90
6839 7260 2.932855 TTGGAACACGGGTGTATTGA 57.067 45.000 4.68 0.00 44.13 2.57
6840 7261 2.932855 TGGAACACGGGTGTATTGAA 57.067 45.000 4.68 0.00 44.13 2.69
6841 7262 2.773487 TGGAACACGGGTGTATTGAAG 58.227 47.619 4.68 0.00 44.13 3.02
6842 7263 2.081462 GGAACACGGGTGTATTGAAGG 58.919 52.381 4.68 0.00 44.13 3.46
6843 7264 2.289819 GGAACACGGGTGTATTGAAGGA 60.290 50.000 4.68 0.00 44.13 3.36
6845 7266 1.975680 ACACGGGTGTATTGAAGGACT 59.024 47.619 1.96 0.00 42.90 3.85
6846 7267 2.370849 ACACGGGTGTATTGAAGGACTT 59.629 45.455 1.96 0.00 42.90 3.01
6847 7268 3.181448 ACACGGGTGTATTGAAGGACTTT 60.181 43.478 1.96 0.00 42.90 2.66
6849 7270 5.183228 CACGGGTGTATTGAAGGACTTTAT 58.817 41.667 0.00 0.00 0.00 1.40
6850 7271 5.646360 CACGGGTGTATTGAAGGACTTTATT 59.354 40.000 0.00 0.00 0.00 1.40
6851 7272 6.150474 CACGGGTGTATTGAAGGACTTTATTT 59.850 38.462 0.00 0.00 0.00 1.40
6853 7274 7.884354 ACGGGTGTATTGAAGGACTTTATTTTA 59.116 33.333 0.00 0.00 0.00 1.52
6854 7275 8.732531 CGGGTGTATTGAAGGACTTTATTTTAA 58.267 33.333 0.00 0.00 0.00 1.52
6923 7344 8.908786 AAAATTCTACGTGATCATATGGATGT 57.091 30.769 0.00 2.17 36.00 3.06
6924 7345 9.996554 AAAATTCTACGTGATCATATGGATGTA 57.003 29.630 0.00 3.17 36.00 2.29
6932 7353 9.803315 ACGTGATCATATGGATGTATATTACAC 57.197 33.333 0.00 0.00 42.23 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.825836 GGGAAGCTGATGGGTGCG 60.826 66.667 0.00 0.00 0.00 5.34
131 132 2.035832 GTGACCAATTGGAGGGTTGTTG 59.964 50.000 31.22 0.28 37.57 3.33
157 158 1.950748 TAGAGGAGGTGGAGGAGGGC 61.951 65.000 0.00 0.00 0.00 5.19
175 176 4.111016 CCACCGCGCAGAGACGTA 62.111 66.667 8.75 0.00 34.88 3.57
209 210 1.098050 GAAGTGGTGGATGGTGATGC 58.902 55.000 0.00 0.00 0.00 3.91
212 213 2.644299 AGATTGAAGTGGTGGATGGTGA 59.356 45.455 0.00 0.00 0.00 4.02
281 282 1.957765 GAGGAGGACGGCTGGGTTAC 61.958 65.000 0.00 0.00 0.00 2.50
316 317 2.146342 CTAGCGGAATTCATTGGCGAT 58.854 47.619 7.93 2.45 0.00 4.58
324 325 1.203758 TCGACTTGCTAGCGGAATTCA 59.796 47.619 10.77 0.00 0.00 2.57
345 346 0.825010 GGAGTTCGGGGCCGTAGATA 60.825 60.000 0.00 0.00 40.74 1.98
346 347 2.132352 GGAGTTCGGGGCCGTAGAT 61.132 63.158 0.00 0.00 40.74 1.98
349 350 2.757099 GAGGAGTTCGGGGCCGTA 60.757 66.667 0.00 0.00 40.74 4.02
412 413 1.142748 CCCCGAGAAGCTGCTACTG 59.857 63.158 0.90 0.00 0.00 2.74
698 699 0.108804 CGCTTCCTTGCCTCGAGTAA 60.109 55.000 12.31 5.47 0.00 2.24
878 879 2.757508 CCTGGAGCAGAGGAGCGA 60.758 66.667 0.00 0.00 40.15 4.93
1010 1012 0.101040 TTATACGCCAGAACGGACGG 59.899 55.000 0.00 0.00 38.24 4.79
1030 1032 1.074889 ACGGTTACATTCCTGGCCTTT 59.925 47.619 3.32 0.00 0.00 3.11
1039 1041 0.725117 CGAGCCCAACGGTTACATTC 59.275 55.000 0.00 0.00 0.00 2.67
1057 1059 1.538075 AGTGCGGTTCAAAATAACCCG 59.462 47.619 0.00 0.00 45.18 5.28
1062 1064 1.610363 TGCCAGTGCGGTTCAAAATA 58.390 45.000 0.00 0.00 41.78 1.40
1074 1076 2.095567 CGAAAGAGACCAAATGCCAGTG 60.096 50.000 0.00 0.00 0.00 3.66
1075 1077 2.154462 CGAAAGAGACCAAATGCCAGT 58.846 47.619 0.00 0.00 0.00 4.00
1076 1078 1.470098 CCGAAAGAGACCAAATGCCAG 59.530 52.381 0.00 0.00 0.00 4.85
1101 1106 3.385115 GACTATTGGAGAAGAGGGGGAA 58.615 50.000 0.00 0.00 0.00 3.97
1109 1115 4.884164 GTGGGAATTGGACTATTGGAGAAG 59.116 45.833 0.00 0.00 0.00 2.85
1110 1116 4.325030 GGTGGGAATTGGACTATTGGAGAA 60.325 45.833 0.00 0.00 0.00 2.87
1111 1117 3.202151 GGTGGGAATTGGACTATTGGAGA 59.798 47.826 0.00 0.00 0.00 3.71
1112 1118 3.555966 GGTGGGAATTGGACTATTGGAG 58.444 50.000 0.00 0.00 0.00 3.86
1113 1119 2.243736 GGGTGGGAATTGGACTATTGGA 59.756 50.000 0.00 0.00 0.00 3.53
1114 1120 2.666317 GGGTGGGAATTGGACTATTGG 58.334 52.381 0.00 0.00 0.00 3.16
1115 1121 2.666317 GGGGTGGGAATTGGACTATTG 58.334 52.381 0.00 0.00 0.00 1.90
1116 1122 1.573857 GGGGGTGGGAATTGGACTATT 59.426 52.381 0.00 0.00 0.00 1.73
1117 1123 1.231963 GGGGGTGGGAATTGGACTAT 58.768 55.000 0.00 0.00 0.00 2.12
1118 1124 2.717958 GGGGGTGGGAATTGGACTA 58.282 57.895 0.00 0.00 0.00 2.59
1119 1125 3.520550 GGGGGTGGGAATTGGACT 58.479 61.111 0.00 0.00 0.00 3.85
1195 1201 0.890090 GGATCTAGCGAGGTACGGCT 60.890 60.000 9.26 9.26 42.83 5.52
1261 1267 1.062044 ACCAAGGAGAGGGGTAGATCC 60.062 57.143 0.00 0.00 31.89 3.36
1314 1321 0.710567 GACGAGACGAAGCACACATG 59.289 55.000 0.00 0.00 0.00 3.21
1356 1363 2.667318 CGCAGAACGCACGGAACAT 61.667 57.895 0.00 0.00 42.60 2.71
1391 1398 3.818787 CCACAAGGCATGGCGCTC 61.819 66.667 14.30 0.00 41.91 5.03
1392 1399 4.666253 ACCACAAGGCATGGCGCT 62.666 61.111 14.30 2.02 41.31 5.92
1431 1443 3.699894 CTGAGCAGTGGCCGGACT 61.700 66.667 9.82 0.00 42.56 3.85
1459 1471 3.774702 GTTTCTCCACGGCGCGTC 61.775 66.667 6.90 3.30 38.32 5.19
1639 1652 6.530534 CCACTACGAACTACAACTTTATCAGG 59.469 42.308 0.00 0.00 0.00 3.86
1650 1663 3.319972 GGGCATATCCACTACGAACTACA 59.680 47.826 0.00 0.00 36.21 2.74
1662 1835 6.045931 AGGATAGAAAAATCTGGGCATATCCA 59.954 38.462 9.80 0.00 39.81 3.41
1663 1836 6.488715 AGGATAGAAAAATCTGGGCATATCC 58.511 40.000 0.00 0.00 38.35 2.59
1674 1847 7.224949 CGAGGTTAACCAGAGGATAGAAAAATC 59.775 40.741 26.26 8.16 38.89 2.17
1688 1861 1.635663 CGGCTTGCGAGGTTAACCAG 61.636 60.000 26.26 19.45 38.89 4.00
1707 1880 5.945155 TCTATTGGTACCAAATTTTGCGAC 58.055 37.500 30.31 3.83 39.55 5.19
1740 1922 9.621629 TGGTTAACACCCACTAAATATGATAAG 57.378 33.333 8.10 0.00 43.49 1.73
1752 1934 1.815757 ACTCCTGGTTAACACCCACT 58.184 50.000 8.10 0.00 43.49 4.00
1803 1985 0.879839 GCCAAACCTTGCACGCATTT 60.880 50.000 0.00 0.00 0.00 2.32
1827 2009 0.469917 CCTCTTGTGTGGTCTGTGGT 59.530 55.000 0.00 0.00 0.00 4.16
1840 2022 4.642466 AGGAACCCTAAACTTCCTCTTG 57.358 45.455 0.00 0.00 42.29 3.02
1861 2043 3.244457 TGACTACGGAGTGAGAGAACAGA 60.244 47.826 4.10 0.00 45.73 3.41
1864 2046 2.812591 TGTGACTACGGAGTGAGAGAAC 59.187 50.000 4.10 0.00 45.73 3.01
1865 2047 3.136009 TGTGACTACGGAGTGAGAGAA 57.864 47.619 4.10 0.00 45.73 2.87
1867 2049 3.275143 AGATGTGACTACGGAGTGAGAG 58.725 50.000 4.10 0.00 45.73 3.20
1869 2051 3.275143 AGAGATGTGACTACGGAGTGAG 58.725 50.000 4.10 0.00 45.73 3.51
1870 2052 3.055021 AGAGAGATGTGACTACGGAGTGA 60.055 47.826 4.10 0.00 45.73 3.41
1871 2053 3.275143 AGAGAGATGTGACTACGGAGTG 58.725 50.000 4.10 0.00 45.73 3.51
1873 2055 3.942115 TGAAGAGAGATGTGACTACGGAG 59.058 47.826 0.00 0.00 0.00 4.63
1874 2056 3.951663 TGAAGAGAGATGTGACTACGGA 58.048 45.455 0.00 0.00 0.00 4.69
1875 2057 4.703645 TTGAAGAGAGATGTGACTACGG 57.296 45.455 0.00 0.00 0.00 4.02
1876 2058 5.067153 AGGATTGAAGAGAGATGTGACTACG 59.933 44.000 0.00 0.00 0.00 3.51
1877 2059 6.463995 AGGATTGAAGAGAGATGTGACTAC 57.536 41.667 0.00 0.00 0.00 2.73
1895 2110 3.843027 TCTGAAGCAGAGAGGAAAGGATT 59.157 43.478 0.00 0.00 35.39 3.01
1921 2136 4.202010 GGTTTTGCTGTGAGCTTAACAGAA 60.202 41.667 26.25 17.59 46.55 3.02
1922 2137 3.315191 GGTTTTGCTGTGAGCTTAACAGA 59.685 43.478 26.25 13.39 46.55 3.41
1984 2200 1.137872 CAAGGATGGGAGAGAGGAACG 59.862 57.143 0.00 0.00 0.00 3.95
2011 2227 2.223805 GCACCAAATTATGCTAGCCCAC 60.224 50.000 13.29 0.00 38.84 4.61
2150 2373 7.618137 TCTCCCAGGTTTACTAAATTACTGAC 58.382 38.462 10.22 0.00 0.00 3.51
2252 2476 5.219633 CACAATTAACACCTAGCGCTTTTT 58.780 37.500 18.68 0.00 0.00 1.94
2253 2477 4.794169 CACAATTAACACCTAGCGCTTTT 58.206 39.130 18.68 4.13 0.00 2.27
2254 2478 3.365969 GCACAATTAACACCTAGCGCTTT 60.366 43.478 18.68 5.74 0.00 3.51
2255 2479 2.161609 GCACAATTAACACCTAGCGCTT 59.838 45.455 18.68 0.00 0.00 4.68
2256 2480 1.737793 GCACAATTAACACCTAGCGCT 59.262 47.619 17.26 17.26 0.00 5.92
2257 2481 1.529010 CGCACAATTAACACCTAGCGC 60.529 52.381 0.00 0.00 37.43 5.92
2258 2482 2.435685 CGCACAATTAACACCTAGCG 57.564 50.000 0.00 0.00 37.91 4.26
2259 2483 3.824414 AACGCACAATTAACACCTAGC 57.176 42.857 0.00 0.00 0.00 3.42
2260 2484 4.381566 GCAAAACGCACAATTAACACCTAG 59.618 41.667 0.00 0.00 41.79 3.02
2261 2485 4.291783 GCAAAACGCACAATTAACACCTA 58.708 39.130 0.00 0.00 41.79 3.08
2262 2486 3.120041 GCAAAACGCACAATTAACACCT 58.880 40.909 0.00 0.00 41.79 4.00
2263 2487 2.219903 GGCAAAACGCACAATTAACACC 59.780 45.455 0.00 0.00 45.17 4.16
2264 2488 2.860735 TGGCAAAACGCACAATTAACAC 59.139 40.909 0.00 0.00 45.17 3.32
2265 2489 2.860735 GTGGCAAAACGCACAATTAACA 59.139 40.909 0.00 0.00 45.17 2.41
2266 2490 2.219903 GGTGGCAAAACGCACAATTAAC 59.780 45.455 0.00 0.00 45.17 2.01
2267 2491 2.474816 GGTGGCAAAACGCACAATTAA 58.525 42.857 0.00 0.00 45.17 1.40
2268 2492 1.600663 CGGTGGCAAAACGCACAATTA 60.601 47.619 0.00 0.00 45.17 1.40
2269 2493 0.873743 CGGTGGCAAAACGCACAATT 60.874 50.000 0.00 0.00 45.17 2.32
2270 2494 1.299773 CGGTGGCAAAACGCACAAT 60.300 52.632 0.00 0.00 45.17 2.71
2271 2495 2.103143 CGGTGGCAAAACGCACAA 59.897 55.556 0.00 0.00 45.17 3.33
2276 2500 4.383602 CGAGGCGGTGGCAAAACG 62.384 66.667 0.00 0.00 42.47 3.60
2277 2501 4.700365 GCGAGGCGGTGGCAAAAC 62.700 66.667 0.00 0.00 42.47 2.43
2288 2512 2.453638 GGTCAGTAAAGCGCGAGGC 61.454 63.158 12.10 0.00 44.05 4.70
2289 2513 0.669318 TTGGTCAGTAAAGCGCGAGG 60.669 55.000 12.10 0.00 0.00 4.63
2290 2514 1.126846 CTTTGGTCAGTAAAGCGCGAG 59.873 52.381 12.10 0.00 0.00 5.03
2291 2515 1.144969 CTTTGGTCAGTAAAGCGCGA 58.855 50.000 12.10 0.00 0.00 5.87
2292 2516 3.657537 CTTTGGTCAGTAAAGCGCG 57.342 52.632 0.00 0.00 0.00 6.86
2296 2520 2.855180 CATGCGCTTTGGTCAGTAAAG 58.145 47.619 9.73 0.00 38.00 1.85
2297 2521 1.068610 GCATGCGCTTTGGTCAGTAAA 60.069 47.619 9.73 0.00 34.30 2.01
2298 2522 0.521291 GCATGCGCTTTGGTCAGTAA 59.479 50.000 9.73 0.00 34.30 2.24
2299 2523 2.170738 GCATGCGCTTTGGTCAGTA 58.829 52.632 9.73 0.00 34.30 2.74
2300 2524 2.956987 GCATGCGCTTTGGTCAGT 59.043 55.556 9.73 0.00 34.30 3.41
2310 2534 0.179156 AACTGCACATAAGCATGCGC 60.179 50.000 13.01 9.10 45.13 6.09
2311 2535 3.294102 CATAACTGCACATAAGCATGCG 58.706 45.455 13.01 0.00 45.13 4.73
2325 2549 4.864916 ACGCTTAATCTGTGCATAACTG 57.135 40.909 0.00 0.00 0.00 3.16
2326 2550 5.661458 ACTACGCTTAATCTGTGCATAACT 58.339 37.500 0.00 0.00 0.00 2.24
2327 2551 5.968387 ACTACGCTTAATCTGTGCATAAC 57.032 39.130 0.00 0.00 0.00 1.89
2328 2552 7.307160 GCATAACTACGCTTAATCTGTGCATAA 60.307 37.037 0.00 0.00 0.00 1.90
2329 2553 6.145534 GCATAACTACGCTTAATCTGTGCATA 59.854 38.462 0.00 0.00 0.00 3.14
2330 2554 5.050091 GCATAACTACGCTTAATCTGTGCAT 60.050 40.000 0.00 0.00 0.00 3.96
2331 2555 4.270084 GCATAACTACGCTTAATCTGTGCA 59.730 41.667 0.00 0.00 0.00 4.57
2332 2556 4.606232 CGCATAACTACGCTTAATCTGTGC 60.606 45.833 0.00 0.00 0.00 4.57
2333 2557 4.994734 CGCATAACTACGCTTAATCTGTG 58.005 43.478 0.00 0.00 0.00 3.66
2361 2585 0.165944 CTCTAGGCGTTGGCAAAACG 59.834 55.000 16.88 16.88 45.56 3.60
2362 2586 0.109735 GCTCTAGGCGTTGGCAAAAC 60.110 55.000 0.00 0.00 42.47 2.43
2363 2587 1.241315 GGCTCTAGGCGTTGGCAAAA 61.241 55.000 0.00 0.00 42.47 2.44
2364 2588 1.674322 GGCTCTAGGCGTTGGCAAA 60.674 57.895 0.00 0.00 42.47 3.68
2365 2589 1.261938 TAGGCTCTAGGCGTTGGCAA 61.262 55.000 0.00 0.00 46.23 4.52
2366 2590 1.676678 CTAGGCTCTAGGCGTTGGCA 61.677 60.000 0.00 0.00 46.23 4.92
2367 2591 1.068250 CTAGGCTCTAGGCGTTGGC 59.932 63.158 0.00 0.00 46.23 4.52
2368 2592 1.742768 CCTAGGCTCTAGGCGTTGG 59.257 63.158 13.35 10.22 46.23 3.77
2374 2598 1.395826 AAGCACGCCTAGGCTCTAGG 61.396 60.000 30.55 17.32 40.01 3.02
2375 2599 1.319541 TAAGCACGCCTAGGCTCTAG 58.680 55.000 30.55 17.70 40.01 2.43
2376 2600 1.613925 CATAAGCACGCCTAGGCTCTA 59.386 52.381 30.55 14.41 40.01 2.43
2377 2601 0.390860 CATAAGCACGCCTAGGCTCT 59.609 55.000 30.55 20.68 40.01 4.09
2378 2602 1.224722 GCATAAGCACGCCTAGGCTC 61.225 60.000 30.55 18.86 40.01 4.70
2379 2603 1.227674 GCATAAGCACGCCTAGGCT 60.228 57.895 30.55 14.71 43.46 4.58
2380 2604 2.598632 CGCATAAGCACGCCTAGGC 61.599 63.158 24.75 24.75 42.27 3.93
2381 2605 3.630204 CGCATAAGCACGCCTAGG 58.370 61.111 3.67 3.67 42.27 3.02
2388 2612 0.230769 CTAAGCGAGCGCATAAGCAC 59.769 55.000 17.68 0.00 44.88 4.40
2389 2613 0.875908 CCTAAGCGAGCGCATAAGCA 60.876 55.000 17.68 0.00 44.88 3.91
2390 2614 1.856012 CCTAAGCGAGCGCATAAGC 59.144 57.895 17.68 9.37 44.88 3.09
2391 2615 1.856012 GCCTAAGCGAGCGCATAAG 59.144 57.895 17.68 10.30 44.88 1.73
2392 2616 4.027755 GCCTAAGCGAGCGCATAA 57.972 55.556 17.68 0.89 44.88 1.90
2420 2644 9.849166 GGTAAGTTGCAATAAAAAGCATAGTTA 57.151 29.630 0.59 0.00 40.94 2.24
2421 2645 8.364142 TGGTAAGTTGCAATAAAAAGCATAGTT 58.636 29.630 0.59 0.00 40.94 2.24
2422 2646 7.891561 TGGTAAGTTGCAATAAAAAGCATAGT 58.108 30.769 0.59 0.00 40.94 2.12
2423 2647 8.755696 TTGGTAAGTTGCAATAAAAAGCATAG 57.244 30.769 0.59 0.00 40.94 2.23
2424 2648 9.149225 CATTGGTAAGTTGCAATAAAAAGCATA 57.851 29.630 0.59 0.00 40.94 3.14
2425 2649 7.661027 ACATTGGTAAGTTGCAATAAAAAGCAT 59.339 29.630 0.59 0.00 40.94 3.79
2426 2650 6.989169 ACATTGGTAAGTTGCAATAAAAAGCA 59.011 30.769 0.59 0.27 39.32 3.91
2427 2651 7.420184 ACATTGGTAAGTTGCAATAAAAAGC 57.580 32.000 0.59 0.00 0.00 3.51
2428 2652 9.691362 AGTACATTGGTAAGTTGCAATAAAAAG 57.309 29.630 0.59 0.00 0.00 2.27
2430 2654 9.469807 CAAGTACATTGGTAAGTTGCAATAAAA 57.530 29.630 0.59 0.00 35.08 1.52
2431 2655 8.634444 ACAAGTACATTGGTAAGTTGCAATAAA 58.366 29.630 0.59 0.00 43.68 1.40
2472 2696 5.621228 GTGTTCTAAAATCAAACAGAGCACG 59.379 40.000 2.44 0.00 38.75 5.34
2579 2803 2.417719 CCTTTCTCGAGGTCAACTTGG 58.582 52.381 13.56 0.66 31.89 3.61
2600 2824 7.596494 TGCTATCATTAGGCATTTGATTAAGC 58.404 34.615 9.83 9.83 34.38 3.09
2627 2851 3.201290 CATAGTTGCAGGGCTAGTTGAG 58.799 50.000 0.00 0.00 0.00 3.02
2965 3189 8.181573 GTGTCTGACATTGTTAGAAAAAGAACA 58.818 33.333 14.37 3.49 30.27 3.18
3172 3396 7.047460 AGAACTTTCTGCAATGAAGAACAAT 57.953 32.000 2.53 0.00 35.89 2.71
3336 3560 2.419851 GGCTGGAGACTCTTGAGGATTG 60.420 54.545 1.74 0.00 0.00 2.67
3429 3653 5.163550 ACAAAGGAAAACTAGCAGTTGAACC 60.164 40.000 0.00 6.74 38.66 3.62
3582 3806 4.222810 AGTTACAGGACATGTCATACAGCA 59.777 41.667 26.47 2.05 42.70 4.41
3695 3919 4.785453 GAGGCTTGGGGTGCTCCG 62.785 72.222 0.00 0.00 36.01 4.63
3736 3961 5.454966 ACCACAAAAAGGGTTGTTAGAGAT 58.545 37.500 0.00 0.00 39.73 2.75
3744 3969 2.383855 TCAGGACCACAAAAAGGGTTG 58.616 47.619 0.00 0.00 37.57 3.77
3755 3980 7.573968 ATGCTAAGAAAATTATCAGGACCAC 57.426 36.000 0.00 0.00 0.00 4.16
4096 4321 8.328758 TCAGAAATATTGGTATTGACTGGAACT 58.671 33.333 0.00 0.00 36.83 3.01
4107 4332 7.885399 GGCTTGGAGTATCAGAAATATTGGTAT 59.115 37.037 0.00 0.00 36.25 2.73
4176 4401 4.818005 CCATCGATGGTGAATTTGAGATGA 59.182 41.667 32.39 0.00 43.05 2.92
4275 4500 1.198713 AGATCGTGGTTCAGAGCCAT 58.801 50.000 9.55 0.00 38.40 4.40
4362 4587 5.296780 TCAAGTTTTGAAGTGTCAGGATCAC 59.703 40.000 0.00 0.00 36.59 3.06
4399 4624 5.580998 ACCTCAGGTTCTGTGATAGAAGTA 58.419 41.667 0.00 0.00 45.71 2.24
4454 4706 6.935771 TGACATACCACGGTAAAAGTAAATGT 59.064 34.615 0.00 0.00 33.99 2.71
4613 4865 4.260139 TGATGCATTGCACAGTCAAAAT 57.740 36.364 14.66 0.00 43.04 1.82
4797 5052 7.981789 CCAGTACTCTAATGCTGAGTAATTTCA 59.018 37.037 5.35 0.00 45.14 2.69
4805 5060 6.458232 AGTTACCAGTACTCTAATGCTGAG 57.542 41.667 0.00 0.00 34.50 3.35
4862 5120 1.375268 GTGTGCCTCAGCTCAGGTC 60.375 63.158 5.21 0.00 42.79 3.85
4890 5148 8.165239 ACATTCTTTCTTACACAGTGCATTTA 57.835 30.769 0.00 0.00 0.00 1.40
5114 5455 6.749923 AGAATATTGTGAAAGAGTTCCTGC 57.250 37.500 0.00 0.00 32.28 4.85
5287 5628 8.752187 GGAGAGAGATCTTCTAAGATATGCAAT 58.248 37.037 4.65 0.00 45.39 3.56
5563 5907 3.193263 CGAGAAATCAGCACATACAGCT 58.807 45.455 0.00 0.00 44.62 4.24
5658 6002 5.807011 GCAAAAGCATGAAGAAATTATCCGT 59.193 36.000 0.00 0.00 0.00 4.69
5803 6166 4.900054 AGGAGTAACTTAAGTGGTCACAGT 59.100 41.667 9.34 0.00 0.00 3.55
5886 6249 5.619625 ACATACAAGAAGCTTGAGAAAGC 57.380 39.130 2.10 2.21 45.81 3.51
5902 6265 9.442047 AAAGAATTTGGAAACACAAAACATACA 57.558 25.926 0.00 0.00 42.91 2.29
5944 6307 7.339732 CGTGACCTTCAAGCATATAATAGTC 57.660 40.000 0.00 0.00 0.00 2.59
5973 6336 1.629013 TAGCACGCATGAGAAGTTCG 58.371 50.000 2.50 0.00 0.00 3.95
6077 6477 2.030958 GTACCACTTTGCCGGTCGG 61.031 63.158 1.90 4.85 36.69 4.79
6240 6643 1.273048 ACAACTACGAACCGCCATGTA 59.727 47.619 0.00 0.00 0.00 2.29
6282 6685 2.596338 TGGACGAGTGCGACTCCA 60.596 61.111 9.71 0.00 42.12 3.86
6329 6732 3.517100 AGGCACTGTATCAAGATCACTGT 59.483 43.478 0.00 0.00 37.18 3.55
6351 6754 1.530419 AAGAACATGGCCCGTTGCA 60.530 52.632 12.10 0.00 43.89 4.08
6508 6911 3.805928 CAGTACCACTGCTCCCCA 58.194 61.111 0.00 0.00 39.62 4.96
6551 6954 0.250513 AAGAGCAATGACCCGGACTC 59.749 55.000 0.73 0.00 0.00 3.36
6584 6987 0.326264 CAAGTGGCTACCTTCCTGCT 59.674 55.000 0.00 0.00 0.00 4.24
6585 6988 1.308783 GCAAGTGGCTACCTTCCTGC 61.309 60.000 0.00 0.00 40.25 4.85
6587 6990 0.036875 GTGCAAGTGGCTACCTTCCT 59.963 55.000 0.00 0.00 45.15 3.36
6629 7037 2.363680 CTCCTACATCGCATCCTCACTT 59.636 50.000 0.00 0.00 0.00 3.16
6646 7054 4.704103 TGGCGCTCTCCACCTCCT 62.704 66.667 7.64 0.00 0.00 3.69
6698 7106 1.209128 CAACTAAGATGGCTACCGCG 58.791 55.000 0.00 0.00 36.88 6.46
6715 7123 5.220854 GCTACAGTTCAAGAGTTTTCAGCAA 60.221 40.000 0.00 0.00 0.00 3.91
6717 7125 4.513318 AGCTACAGTTCAAGAGTTTTCAGC 59.487 41.667 0.00 0.00 0.00 4.26
6740 7148 2.221169 CAAACCAGTGTAGCAGCAAGA 58.779 47.619 0.00 0.00 0.00 3.02
6747 7167 1.681264 AGGCAAACAAACCAGTGTAGC 59.319 47.619 0.00 0.00 33.97 3.58
6752 7172 2.456577 ACAAGAGGCAAACAAACCAGT 58.543 42.857 0.00 0.00 0.00 4.00
6789 7210 2.901813 CCCTGCAGCTCTCTCAGG 59.098 66.667 8.66 11.81 45.24 3.86
6790 7211 2.187424 GCCCTGCAGCTCTCTCAG 59.813 66.667 8.66 0.00 0.00 3.35
6791 7212 3.767806 CGCCCTGCAGCTCTCTCA 61.768 66.667 8.66 0.00 0.00 3.27
6793 7214 3.459965 CTCGCCCTGCAGCTCTCT 61.460 66.667 8.66 0.00 0.00 3.10
6794 7215 3.429080 CTCTCGCCCTGCAGCTCTC 62.429 68.421 8.66 0.00 0.00 3.20
6795 7216 3.459965 CTCTCGCCCTGCAGCTCT 61.460 66.667 8.66 0.00 0.00 4.09
6796 7217 3.768922 ACTCTCGCCCTGCAGCTC 61.769 66.667 8.66 0.30 0.00 4.09
6797 7218 4.079850 CACTCTCGCCCTGCAGCT 62.080 66.667 8.66 0.00 0.00 4.24
6799 7220 2.249413 AATCCACTCTCGCCCTGCAG 62.249 60.000 6.78 6.78 0.00 4.41
6800 7221 1.841302 AAATCCACTCTCGCCCTGCA 61.841 55.000 0.00 0.00 0.00 4.41
6801 7222 0.678048 AAAATCCACTCTCGCCCTGC 60.678 55.000 0.00 0.00 0.00 4.85
6802 7223 1.470098 CAAAAATCCACTCTCGCCCTG 59.530 52.381 0.00 0.00 0.00 4.45
6803 7224 1.614317 CCAAAAATCCACTCTCGCCCT 60.614 52.381 0.00 0.00 0.00 5.19
6807 7228 3.363970 CGTGTTCCAAAAATCCACTCTCG 60.364 47.826 0.00 0.00 0.00 4.04
6809 7230 2.884639 CCGTGTTCCAAAAATCCACTCT 59.115 45.455 0.00 0.00 0.00 3.24
6810 7231 2.030274 CCCGTGTTCCAAAAATCCACTC 60.030 50.000 0.00 0.00 0.00 3.51
6813 7234 1.683917 CACCCGTGTTCCAAAAATCCA 59.316 47.619 0.00 0.00 0.00 3.41
6814 7235 1.684450 ACACCCGTGTTCCAAAAATCC 59.316 47.619 0.00 0.00 41.83 3.01
6815 7236 4.776795 ATACACCCGTGTTCCAAAAATC 57.223 40.909 5.69 0.00 41.83 2.17
6816 7237 4.585162 TCAATACACCCGTGTTCCAAAAAT 59.415 37.500 5.69 0.00 41.83 1.82
6817 7238 3.952323 TCAATACACCCGTGTTCCAAAAA 59.048 39.130 5.69 0.00 41.83 1.94
6818 7239 3.552875 TCAATACACCCGTGTTCCAAAA 58.447 40.909 5.69 0.00 41.83 2.44
6820 7241 2.932855 TCAATACACCCGTGTTCCAA 57.067 45.000 5.69 0.00 41.83 3.53
6821 7242 2.551287 CCTTCAATACACCCGTGTTCCA 60.551 50.000 5.69 0.00 41.83 3.53
6822 7243 2.081462 CCTTCAATACACCCGTGTTCC 58.919 52.381 5.69 0.00 41.83 3.62
6823 7244 2.740447 GTCCTTCAATACACCCGTGTTC 59.260 50.000 5.69 0.00 41.83 3.18
6824 7245 2.370849 AGTCCTTCAATACACCCGTGTT 59.629 45.455 5.69 0.00 41.83 3.32
6825 7246 1.975680 AGTCCTTCAATACACCCGTGT 59.024 47.619 5.69 5.69 46.87 4.49
6826 7247 2.762535 AGTCCTTCAATACACCCGTG 57.237 50.000 0.00 0.00 0.00 4.94
6827 7248 3.782656 AAAGTCCTTCAATACACCCGT 57.217 42.857 0.00 0.00 0.00 5.28
6828 7249 6.753107 AAATAAAGTCCTTCAATACACCCG 57.247 37.500 0.00 0.00 0.00 5.28
6857 7278 9.883142 TGAAACCTTAAATGTGATTTTCAAAGT 57.117 25.926 0.00 0.00 33.82 2.66
6897 7318 9.342308 ACATCCATATGATCACGTAGAATTTTT 57.658 29.630 3.65 0.00 36.54 1.94
6906 7327 9.803315 GTGTAATATACATCCATATGATCACGT 57.197 33.333 3.65 0.00 41.34 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.