Multiple sequence alignment - TraesCS1B01G183500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G183500 chr1B 100.000 3196 0 0 1 3196 330387414 330390609 0.000000e+00 5903.0
1 TraesCS1B01G183500 chr1B 90.443 429 27 6 2598 3014 456729430 456729004 1.300000e-153 553.0
2 TraesCS1B01G183500 chr1B 88.863 431 34 3 2596 3014 409676208 409675780 4.730000e-143 518.0
3 TraesCS1B01G183500 chr1B 81.119 429 52 9 3 429 623375715 623376116 1.850000e-82 316.0
4 TraesCS1B01G183500 chr1B 95.238 42 2 0 1759 1800 615942172 615942213 2.060000e-07 67.6
5 TraesCS1B01G183500 chr1D 91.214 1787 87 30 702 2460 247331348 247329604 0.000000e+00 2366.0
6 TraesCS1B01G183500 chr1D 83.791 364 35 8 3 364 296677163 296676822 1.110000e-84 324.0
7 TraesCS1B01G183500 chr1D 90.947 243 16 2 462 698 247333092 247332850 3.980000e-84 322.0
8 TraesCS1B01G183500 chr1D 79.085 459 57 11 3 458 293165727 293166149 2.430000e-71 279.0
9 TraesCS1B01G183500 chr1D 93.007 143 10 0 2454 2596 247329573 247329431 3.230000e-50 209.0
10 TraesCS1B01G183500 chr1D 87.963 108 7 2 3095 3196 247328904 247328797 4.330000e-24 122.0
11 TraesCS1B01G183500 chr1A 96.060 939 32 4 1322 2257 300004124 300005060 0.000000e+00 1524.0
12 TraesCS1B01G183500 chr1A 90.625 832 37 12 517 1309 300003322 300004151 0.000000e+00 1066.0
13 TraesCS1B01G183500 chr1A 93.373 166 10 1 3032 3196 300005820 300005985 8.860000e-61 244.0
14 TraesCS1B01G183500 chr3D 90.046 432 26 4 2596 3014 416139802 416139375 7.800000e-151 544.0
15 TraesCS1B01G183500 chr3D 89.549 421 42 2 2597 3016 75614974 75614555 1.690000e-147 532.0
16 TraesCS1B01G183500 chr3D 84.956 452 45 4 17 466 6297232 6297662 1.360000e-118 436.0
17 TraesCS1B01G183500 chr3D 84.267 464 50 4 3 464 359690544 359690102 6.330000e-117 431.0
18 TraesCS1B01G183500 chr3D 84.701 451 46 4 17 465 112753919 112754348 2.280000e-116 429.0
19 TraesCS1B01G183500 chr3D 83.226 465 55 4 3 465 439835674 439835231 3.840000e-109 405.0
20 TraesCS1B01G183500 chr2B 89.583 432 30 4 2597 3015 63847867 63848296 4.690000e-148 534.0
21 TraesCS1B01G183500 chr2B 89.021 419 39 6 2597 3014 150539977 150539565 2.200000e-141 512.0
22 TraesCS1B01G183500 chr2B 87.248 447 39 6 2581 3014 71368249 71367808 7.960000e-136 494.0
23 TraesCS1B01G183500 chr2B 83.801 463 52 4 4 465 150602452 150602012 4.930000e-113 418.0
24 TraesCS1B01G183500 chr4B 89.311 421 43 2 2597 3015 74329628 74329208 7.850000e-146 527.0
25 TraesCS1B01G183500 chr4B 83.130 409 46 5 3 409 191717271 191717658 5.070000e-93 351.0
26 TraesCS1B01G183500 chr4D 88.361 421 43 6 2597 3015 55307146 55306730 4.760000e-138 501.0
27 TraesCS1B01G183500 chr4D 84.683 457 48 9 3 458 506343223 506343658 1.360000e-118 436.0
28 TraesCS1B01G183500 chr7A 87.991 433 24 8 2600 3019 96147246 96146829 1.330000e-133 486.0
29 TraesCS1B01G183500 chr5A 86.158 419 53 4 2597 3014 552510764 552511178 6.290000e-122 448.0
30 TraesCS1B01G183500 chr5A 80.346 463 68 6 4 464 278101348 278100907 2.380000e-86 329.0
31 TraesCS1B01G183500 chr5A 88.839 224 23 2 2597 2818 526385261 526385484 1.130000e-69 274.0
32 TraesCS1B01G183500 chr4A 84.026 457 57 3 3 458 136249416 136249857 2.950000e-115 425.0
33 TraesCS1B01G183500 chr5D 83.660 459 49 8 3 458 391317414 391317849 2.970000e-110 409.0
34 TraesCS1B01G183500 chr5D 82.533 458 56 6 3 458 483215751 483216186 6.470000e-102 381.0
35 TraesCS1B01G183500 chr6D 83.190 464 53 8 3 464 372152172 372151732 4.970000e-108 401.0
36 TraesCS1B01G183500 chr6D 82.073 463 44 6 3 464 392573475 392573051 3.030000e-95 359.0
37 TraesCS1B01G183500 chr2D 83.188 458 54 5 3 458 50845113 50845549 6.420000e-107 398.0
38 TraesCS1B01G183500 chr7B 82.289 463 50 9 3 464 31815660 31815229 3.890000e-99 372.0
39 TraesCS1B01G183500 chr6B 78.090 178 30 7 2205 2376 413496889 413496715 1.570000e-18 104.0
40 TraesCS1B01G183500 chr3B 90.476 42 4 0 1759 1800 115243973 115244014 4.450000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G183500 chr1B 330387414 330390609 3195 False 5903.000000 5903 100.000000 1 3196 1 chr1B.!!$F1 3195
1 TraesCS1B01G183500 chr1D 247328797 247333092 4295 True 754.750000 2366 90.782750 462 3196 4 chr1D.!!$R2 2734
2 TraesCS1B01G183500 chr1A 300003322 300005985 2663 False 944.666667 1524 93.352667 517 3196 3 chr1A.!!$F1 2679

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 292 0.032952 CAGAAACACGAGGTCCGGAA 59.967 55.0 5.23 0.0 43.93 4.30 F
1110 2640 0.234106 CAGACTGTTCTTGCGTGCAG 59.766 55.0 0.00 0.0 35.31 4.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 3569 0.604578 GCTGCCAAAAGAATCCAGCA 59.395 50.0 6.1 0.0 46.00 4.41 R
2630 4800 0.250295 CCGAGTTTGGAGCACAAGGA 60.250 55.0 0.0 0.0 40.82 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.485431 CAGGAGCTTGCGCAGTCG 61.485 66.667 11.31 4.49 39.10 4.18
29 30 3.175240 CAGTCGCAGCGAACCGAG 61.175 66.667 21.50 3.91 37.72 4.63
30 31 4.421479 AGTCGCAGCGAACCGAGG 62.421 66.667 21.50 0.00 37.72 4.63
38 39 4.760047 CGAACCGAGGCCAGGGTG 62.760 72.222 17.49 3.67 36.45 4.61
39 40 3.319198 GAACCGAGGCCAGGGTGA 61.319 66.667 17.49 0.00 36.45 4.02
40 41 2.852075 AACCGAGGCCAGGGTGAA 60.852 61.111 17.49 0.00 36.45 3.18
41 42 2.406002 GAACCGAGGCCAGGGTGAAA 62.406 60.000 17.49 0.00 36.45 2.69
42 43 2.002018 AACCGAGGCCAGGGTGAAAA 62.002 55.000 17.49 0.00 36.45 2.29
43 44 1.971695 CCGAGGCCAGGGTGAAAAC 60.972 63.158 5.01 0.00 0.00 2.43
44 45 1.971695 CGAGGCCAGGGTGAAAACC 60.972 63.158 5.01 0.00 0.00 3.27
51 52 4.646877 GGGTGAAAACCCCGGCGA 62.647 66.667 9.30 0.00 44.18 5.54
52 53 3.053896 GGTGAAAACCCCGGCGAG 61.054 66.667 9.30 0.92 0.00 5.03
53 54 2.031465 GTGAAAACCCCGGCGAGA 59.969 61.111 9.30 0.00 0.00 4.04
54 55 1.598685 GTGAAAACCCCGGCGAGAA 60.599 57.895 9.30 0.00 0.00 2.87
55 56 1.302192 TGAAAACCCCGGCGAGAAG 60.302 57.895 9.30 0.00 0.00 2.85
56 57 2.033602 AAAACCCCGGCGAGAAGG 59.966 61.111 9.30 6.04 0.00 3.46
57 58 2.459202 GAAAACCCCGGCGAGAAGGA 62.459 60.000 9.30 0.00 0.00 3.36
58 59 2.465055 AAAACCCCGGCGAGAAGGAG 62.465 60.000 9.30 0.00 0.00 3.69
59 60 3.899545 AACCCCGGCGAGAAGGAGA 62.900 63.158 9.30 0.00 0.00 3.71
60 61 3.532155 CCCCGGCGAGAAGGAGAG 61.532 72.222 9.30 0.00 0.00 3.20
61 62 2.440430 CCCGGCGAGAAGGAGAGA 60.440 66.667 9.30 0.00 0.00 3.10
62 63 2.485795 CCCGGCGAGAAGGAGAGAG 61.486 68.421 9.30 0.00 0.00 3.20
63 64 2.485795 CCGGCGAGAAGGAGAGAGG 61.486 68.421 9.30 0.00 0.00 3.69
64 65 1.751162 CGGCGAGAAGGAGAGAGGT 60.751 63.158 0.00 0.00 0.00 3.85
65 66 1.813192 GGCGAGAAGGAGAGAGGTG 59.187 63.158 0.00 0.00 0.00 4.00
66 67 1.140804 GCGAGAAGGAGAGAGGTGC 59.859 63.158 0.00 0.00 0.00 5.01
67 68 1.431440 CGAGAAGGAGAGAGGTGCG 59.569 63.158 0.00 0.00 0.00 5.34
68 69 1.813192 GAGAAGGAGAGAGGTGCGG 59.187 63.158 0.00 0.00 0.00 5.69
69 70 0.681564 GAGAAGGAGAGAGGTGCGGA 60.682 60.000 0.00 0.00 0.00 5.54
70 71 0.682855 AGAAGGAGAGAGGTGCGGAG 60.683 60.000 0.00 0.00 0.00 4.63
83 84 2.420890 CGGAGCAGATGAGGAGCC 59.579 66.667 0.00 0.00 0.00 4.70
84 85 2.420890 GGAGCAGATGAGGAGCCG 59.579 66.667 0.00 0.00 0.00 5.52
85 86 2.420890 GAGCAGATGAGGAGCCGG 59.579 66.667 0.00 0.00 0.00 6.13
86 87 3.805891 GAGCAGATGAGGAGCCGGC 62.806 68.421 21.89 21.89 0.00 6.13
87 88 4.925861 GCAGATGAGGAGCCGGCC 62.926 72.222 26.15 15.07 0.00 6.13
88 89 4.247380 CAGATGAGGAGCCGGCCC 62.247 72.222 26.15 23.87 0.00 5.80
89 90 4.488911 AGATGAGGAGCCGGCCCT 62.489 66.667 29.74 29.74 36.57 5.19
90 91 4.247380 GATGAGGAGCCGGCCCTG 62.247 72.222 33.03 0.00 33.36 4.45
121 122 4.849310 GCATCGGCCCCGTGCTTA 62.849 66.667 19.60 0.00 40.47 3.09
122 123 2.111043 CATCGGCCCCGTGCTTAT 59.889 61.111 6.61 0.00 40.92 1.73
123 124 2.111043 ATCGGCCCCGTGCTTATG 59.889 61.111 6.61 0.00 40.92 1.90
124 125 2.742116 ATCGGCCCCGTGCTTATGT 61.742 57.895 6.61 0.00 40.92 2.29
125 126 2.660258 ATCGGCCCCGTGCTTATGTC 62.660 60.000 6.61 0.00 40.92 3.06
126 127 2.516225 GGCCCCGTGCTTATGTCC 60.516 66.667 0.00 0.00 40.92 4.02
127 128 2.270850 GCCCCGTGCTTATGTCCA 59.729 61.111 0.00 0.00 36.87 4.02
128 129 2.112815 GCCCCGTGCTTATGTCCAC 61.113 63.158 0.00 0.00 36.87 4.02
131 132 3.089784 CGTGCTTATGTCCACGCC 58.910 61.111 0.08 0.00 46.50 5.68
132 133 2.798501 CGTGCTTATGTCCACGCCG 61.799 63.158 0.08 0.00 46.50 6.46
133 134 1.447140 GTGCTTATGTCCACGCCGA 60.447 57.895 0.00 0.00 0.00 5.54
134 135 1.017177 GTGCTTATGTCCACGCCGAA 61.017 55.000 0.00 0.00 0.00 4.30
135 136 0.739462 TGCTTATGTCCACGCCGAAG 60.739 55.000 0.00 0.00 0.00 3.79
148 149 4.194720 CGAAGGGCGAGGAGGACG 62.195 72.222 0.00 0.00 44.57 4.79
149 150 3.839432 GAAGGGCGAGGAGGACGG 61.839 72.222 0.00 0.00 0.00 4.79
177 178 5.643339 CGATAGGAGAAAATTCTTGGACG 57.357 43.478 0.00 0.00 37.73 4.79
178 179 4.508124 CGATAGGAGAAAATTCTTGGACGG 59.492 45.833 0.00 0.00 37.73 4.79
179 180 5.671493 GATAGGAGAAAATTCTTGGACGGA 58.329 41.667 0.00 0.00 37.73 4.69
180 181 4.576330 AGGAGAAAATTCTTGGACGGAT 57.424 40.909 0.00 0.00 37.73 4.18
181 182 4.265073 AGGAGAAAATTCTTGGACGGATG 58.735 43.478 0.00 0.00 37.73 3.51
182 183 4.010349 GGAGAAAATTCTTGGACGGATGT 58.990 43.478 0.00 0.00 37.73 3.06
183 184 4.142600 GGAGAAAATTCTTGGACGGATGTG 60.143 45.833 0.00 0.00 37.73 3.21
184 185 4.398319 AGAAAATTCTTGGACGGATGTGT 58.602 39.130 0.00 0.00 32.55 3.72
185 186 4.216257 AGAAAATTCTTGGACGGATGTGTG 59.784 41.667 0.00 0.00 32.55 3.82
186 187 2.859165 ATTCTTGGACGGATGTGTGT 57.141 45.000 0.00 0.00 0.00 3.72
187 188 1.877637 TTCTTGGACGGATGTGTGTG 58.122 50.000 0.00 0.00 0.00 3.82
188 189 0.756294 TCTTGGACGGATGTGTGTGT 59.244 50.000 0.00 0.00 0.00 3.72
189 190 0.867746 CTTGGACGGATGTGTGTGTG 59.132 55.000 0.00 0.00 0.00 3.82
190 191 0.533978 TTGGACGGATGTGTGTGTGG 60.534 55.000 0.00 0.00 0.00 4.17
191 192 1.671054 GGACGGATGTGTGTGTGGG 60.671 63.158 0.00 0.00 0.00 4.61
192 193 1.671054 GACGGATGTGTGTGTGGGG 60.671 63.158 0.00 0.00 0.00 4.96
193 194 2.359850 CGGATGTGTGTGTGGGGG 60.360 66.667 0.00 0.00 0.00 5.40
216 217 2.741433 GGGTGTCAAGAAAACCCCC 58.259 57.895 9.94 0.00 46.77 5.40
217 218 0.187606 GGGTGTCAAGAAAACCCCCT 59.812 55.000 9.94 0.00 46.77 4.79
218 219 1.426215 GGGTGTCAAGAAAACCCCCTA 59.574 52.381 9.94 0.00 46.77 3.53
219 220 2.511659 GGTGTCAAGAAAACCCCCTAC 58.488 52.381 0.00 0.00 0.00 3.18
220 221 2.511659 GTGTCAAGAAAACCCCCTACC 58.488 52.381 0.00 0.00 0.00 3.18
221 222 1.426215 TGTCAAGAAAACCCCCTACCC 59.574 52.381 0.00 0.00 0.00 3.69
222 223 1.426215 GTCAAGAAAACCCCCTACCCA 59.574 52.381 0.00 0.00 0.00 4.51
223 224 2.145298 TCAAGAAAACCCCCTACCCAA 58.855 47.619 0.00 0.00 0.00 4.12
224 225 2.725227 TCAAGAAAACCCCCTACCCAAT 59.275 45.455 0.00 0.00 0.00 3.16
225 226 3.924072 TCAAGAAAACCCCCTACCCAATA 59.076 43.478 0.00 0.00 0.00 1.90
226 227 4.017867 TCAAGAAAACCCCCTACCCAATAG 60.018 45.833 0.00 0.00 0.00 1.73
238 239 5.234466 CTACCCAATAGGATCCCAAGAAG 57.766 47.826 8.55 0.00 39.89 2.85
239 240 2.175715 ACCCAATAGGATCCCAAGAAGC 59.824 50.000 8.55 0.00 39.89 3.86
240 241 2.498167 CCAATAGGATCCCAAGAAGCG 58.502 52.381 8.55 0.00 36.89 4.68
241 242 2.498167 CAATAGGATCCCAAGAAGCGG 58.502 52.381 8.55 0.00 0.00 5.52
242 243 0.398318 ATAGGATCCCAAGAAGCGGC 59.602 55.000 8.55 0.00 0.00 6.53
243 244 2.028125 TAGGATCCCAAGAAGCGGCG 62.028 60.000 8.55 0.51 0.00 6.46
244 245 2.897350 GATCCCAAGAAGCGGCGG 60.897 66.667 9.78 0.00 0.00 6.13
256 257 4.647615 CGGCGGCTCGGTAGATGG 62.648 72.222 7.61 0.00 0.00 3.51
257 258 4.971125 GGCGGCTCGGTAGATGGC 62.971 72.222 0.00 0.00 0.00 4.40
260 261 4.971125 GGCTCGGTAGATGGCGCC 62.971 72.222 22.73 22.73 0.00 6.53
277 278 4.735132 CGACGCCGAGCCCAGAAA 62.735 66.667 0.00 0.00 38.22 2.52
278 279 3.119096 GACGCCGAGCCCAGAAAC 61.119 66.667 0.00 0.00 0.00 2.78
279 280 3.876589 GACGCCGAGCCCAGAAACA 62.877 63.158 0.00 0.00 0.00 2.83
280 281 3.423154 CGCCGAGCCCAGAAACAC 61.423 66.667 0.00 0.00 0.00 3.32
281 282 3.423154 GCCGAGCCCAGAAACACG 61.423 66.667 0.00 0.00 0.00 4.49
282 283 2.342279 CCGAGCCCAGAAACACGA 59.658 61.111 0.00 0.00 0.00 4.35
283 284 1.738099 CCGAGCCCAGAAACACGAG 60.738 63.158 0.00 0.00 0.00 4.18
284 285 1.738099 CGAGCCCAGAAACACGAGG 60.738 63.158 0.00 0.00 0.00 4.63
285 286 1.371558 GAGCCCAGAAACACGAGGT 59.628 57.895 0.00 0.00 0.00 3.85
286 287 0.670854 GAGCCCAGAAACACGAGGTC 60.671 60.000 0.00 0.00 0.00 3.85
287 288 1.671379 GCCCAGAAACACGAGGTCC 60.671 63.158 0.00 0.00 0.00 4.46
288 289 1.374252 CCCAGAAACACGAGGTCCG 60.374 63.158 0.00 0.00 45.44 4.79
289 290 1.374252 CCAGAAACACGAGGTCCGG 60.374 63.158 0.00 0.00 43.93 5.14
290 291 1.663739 CAGAAACACGAGGTCCGGA 59.336 57.895 0.00 0.00 43.93 5.14
291 292 0.032952 CAGAAACACGAGGTCCGGAA 59.967 55.000 5.23 0.00 43.93 4.30
292 293 0.974383 AGAAACACGAGGTCCGGAAT 59.026 50.000 5.23 0.00 43.93 3.01
293 294 1.067071 AGAAACACGAGGTCCGGAATC 60.067 52.381 5.23 6.81 43.93 2.52
294 295 0.389426 AAACACGAGGTCCGGAATCG 60.389 55.000 29.16 29.16 43.93 3.34
362 363 4.864334 CGGCAGCAGATGGGGGAC 62.864 72.222 0.00 0.00 0.00 4.46
363 364 4.864334 GGCAGCAGATGGGGGACG 62.864 72.222 0.00 0.00 0.00 4.79
364 365 4.864334 GCAGCAGATGGGGGACGG 62.864 72.222 0.00 0.00 0.00 4.79
365 366 4.864334 CAGCAGATGGGGGACGGC 62.864 72.222 0.00 0.00 0.00 5.68
385 386 4.733371 TCGCAGCGCCGACATCAA 62.733 61.111 10.87 0.00 31.36 2.57
386 387 4.214383 CGCAGCGCCGACATCAAG 62.214 66.667 2.29 0.00 0.00 3.02
387 388 3.121030 GCAGCGCCGACATCAAGT 61.121 61.111 2.29 0.00 0.00 3.16
388 389 3.084579 CAGCGCCGACATCAAGTC 58.915 61.111 2.29 0.00 44.02 3.01
389 390 2.125512 AGCGCCGACATCAAGTCC 60.126 61.111 2.29 0.00 44.66 3.85
390 391 3.195698 GCGCCGACATCAAGTCCC 61.196 66.667 0.00 0.00 44.66 4.46
391 392 2.579201 CGCCGACATCAAGTCCCT 59.421 61.111 0.00 0.00 44.66 4.20
392 393 1.811266 CGCCGACATCAAGTCCCTG 60.811 63.158 0.00 0.00 44.66 4.45
393 394 2.109126 GCCGACATCAAGTCCCTGC 61.109 63.158 0.00 0.00 44.66 4.85
394 395 1.450312 CCGACATCAAGTCCCTGCC 60.450 63.158 0.00 0.00 44.66 4.85
395 396 1.450312 CGACATCAAGTCCCTGCCC 60.450 63.158 0.00 0.00 44.66 5.36
396 397 1.450312 GACATCAAGTCCCTGCCCG 60.450 63.158 0.00 0.00 41.56 6.13
397 398 1.899437 GACATCAAGTCCCTGCCCGA 61.899 60.000 0.00 0.00 41.56 5.14
398 399 1.153289 CATCAAGTCCCTGCCCGAG 60.153 63.158 0.00 0.00 0.00 4.63
399 400 1.613630 ATCAAGTCCCTGCCCGAGT 60.614 57.895 0.00 0.00 0.00 4.18
400 401 1.201429 ATCAAGTCCCTGCCCGAGTT 61.201 55.000 0.00 0.00 0.00 3.01
401 402 1.073199 CAAGTCCCTGCCCGAGTTT 59.927 57.895 0.00 0.00 0.00 2.66
402 403 0.537371 CAAGTCCCTGCCCGAGTTTT 60.537 55.000 0.00 0.00 0.00 2.43
403 404 0.537371 AAGTCCCTGCCCGAGTTTTG 60.537 55.000 0.00 0.00 0.00 2.44
404 405 1.072505 GTCCCTGCCCGAGTTTTGA 59.927 57.895 0.00 0.00 0.00 2.69
405 406 0.536460 GTCCCTGCCCGAGTTTTGAA 60.536 55.000 0.00 0.00 0.00 2.69
406 407 0.250727 TCCCTGCCCGAGTTTTGAAG 60.251 55.000 0.00 0.00 0.00 3.02
407 408 1.581447 CCTGCCCGAGTTTTGAAGC 59.419 57.895 0.00 0.00 0.00 3.86
408 409 1.581447 CTGCCCGAGTTTTGAAGCC 59.419 57.895 0.00 0.00 0.00 4.35
409 410 0.890996 CTGCCCGAGTTTTGAAGCCT 60.891 55.000 0.00 0.00 0.00 4.58
410 411 1.172180 TGCCCGAGTTTTGAAGCCTG 61.172 55.000 0.00 0.00 0.00 4.85
411 412 1.866853 GCCCGAGTTTTGAAGCCTGG 61.867 60.000 0.00 0.00 0.00 4.45
412 413 1.581447 CCGAGTTTTGAAGCCTGGC 59.419 57.895 11.65 11.65 0.00 4.85
413 414 1.581447 CGAGTTTTGAAGCCTGGCC 59.419 57.895 16.57 0.00 0.00 5.36
414 415 1.172180 CGAGTTTTGAAGCCTGGCCA 61.172 55.000 16.57 4.71 0.00 5.36
415 416 0.600057 GAGTTTTGAAGCCTGGCCAG 59.400 55.000 26.87 26.87 0.00 4.85
416 417 1.005748 GTTTTGAAGCCTGGCCAGC 60.006 57.895 28.39 21.70 0.00 4.85
417 418 2.209315 TTTTGAAGCCTGGCCAGCC 61.209 57.895 28.39 17.98 0.00 4.85
418 419 2.943369 TTTTGAAGCCTGGCCAGCCA 62.943 55.000 28.39 17.74 45.02 4.75
436 437 1.959042 CAGCGCTTCTGGATATTGGT 58.041 50.000 7.50 0.00 39.15 3.67
437 438 1.600957 CAGCGCTTCTGGATATTGGTG 59.399 52.381 7.50 0.00 39.15 4.17
438 439 1.486310 AGCGCTTCTGGATATTGGTGA 59.514 47.619 2.64 0.00 0.00 4.02
439 440 2.105477 AGCGCTTCTGGATATTGGTGAT 59.895 45.455 2.64 0.00 0.00 3.06
440 441 2.225019 GCGCTTCTGGATATTGGTGATG 59.775 50.000 0.00 0.00 0.00 3.07
441 442 2.225019 CGCTTCTGGATATTGGTGATGC 59.775 50.000 0.00 0.00 0.00 3.91
442 443 2.225019 GCTTCTGGATATTGGTGATGCG 59.775 50.000 0.00 0.00 0.00 4.73
443 444 1.882912 TCTGGATATTGGTGATGCGC 58.117 50.000 0.00 0.00 0.00 6.09
444 445 1.417517 TCTGGATATTGGTGATGCGCT 59.582 47.619 9.73 0.00 0.00 5.92
445 446 1.534163 CTGGATATTGGTGATGCGCTG 59.466 52.381 9.73 0.00 0.00 5.18
446 447 0.877071 GGATATTGGTGATGCGCTGG 59.123 55.000 9.73 0.00 0.00 4.85
447 448 1.597742 GATATTGGTGATGCGCTGGT 58.402 50.000 9.73 0.00 0.00 4.00
448 449 1.532868 GATATTGGTGATGCGCTGGTC 59.467 52.381 9.73 4.94 0.00 4.02
449 450 0.809636 TATTGGTGATGCGCTGGTCG 60.810 55.000 9.73 0.00 42.12 4.79
450 451 2.520465 ATTGGTGATGCGCTGGTCGA 62.520 55.000 9.73 0.00 41.67 4.20
451 452 3.188786 GGTGATGCGCTGGTCGAC 61.189 66.667 9.73 7.13 41.67 4.20
452 453 2.432456 GTGATGCGCTGGTCGACA 60.432 61.111 18.91 2.63 41.67 4.35
461 462 2.896278 CTGGTCGACAGGGGTATGA 58.104 57.895 18.91 0.00 43.70 2.15
462 463 0.747255 CTGGTCGACAGGGGTATGAG 59.253 60.000 18.91 0.00 43.70 2.90
463 464 0.686441 TGGTCGACAGGGGTATGAGG 60.686 60.000 18.91 0.00 0.00 3.86
464 465 1.400530 GGTCGACAGGGGTATGAGGG 61.401 65.000 18.91 0.00 0.00 4.30
470 471 2.766651 GGGGTATGAGGGTCCGCA 60.767 66.667 0.00 0.00 34.89 5.69
471 472 2.372074 GGGGTATGAGGGTCCGCAA 61.372 63.158 0.00 0.00 34.89 4.85
474 475 0.535102 GGTATGAGGGTCCGCAATGG 60.535 60.000 0.00 0.00 40.09 3.16
484 485 1.311859 TCCGCAATGGAGATGCAATC 58.688 50.000 0.00 0.00 43.74 2.67
588 591 3.785499 GCCCGTTTCCGCGAGTTC 61.785 66.667 8.23 0.00 0.00 3.01
620 623 2.509336 GTGCATCCCCGACACTCG 60.509 66.667 0.00 0.00 40.07 4.18
651 654 2.472232 GAAAGGAAAACGCGGGCAGG 62.472 60.000 12.47 0.00 0.00 4.85
929 2449 3.205851 AACCGCCTTTCCACCTCCC 62.206 63.158 0.00 0.00 0.00 4.30
958 2478 3.827898 CCGTCGTCTCCCTCCTGC 61.828 72.222 0.00 0.00 0.00 4.85
1010 2530 0.662619 TTCTTTGCTGCCACGACAAG 59.337 50.000 0.00 0.00 0.00 3.16
1017 2537 1.533033 TGCCACGACAAGGAGGAGA 60.533 57.895 0.00 0.00 0.00 3.71
1019 2539 1.213013 CCACGACAAGGAGGAGACG 59.787 63.158 0.00 0.00 0.00 4.18
1024 2544 1.950973 GACAAGGAGGAGACGGAGGC 61.951 65.000 0.00 0.00 0.00 4.70
1028 2548 3.213402 GAGGAGACGGAGGCTCGG 61.213 72.222 19.25 19.25 33.19 4.63
1044 2564 0.603707 TCGGAAGGCTGAAACTGCAG 60.604 55.000 13.48 13.48 38.91 4.41
1054 2574 0.514691 GAAACTGCAGTCTCGGCAAG 59.485 55.000 21.95 0.00 41.39 4.01
1056 2576 3.123620 CTGCAGTCTCGGCAAGGC 61.124 66.667 5.25 0.00 41.39 4.35
1110 2640 0.234106 CAGACTGTTCTTGCGTGCAG 59.766 55.000 0.00 0.00 35.31 4.41
1960 3490 0.698818 ATCGGCCCTTGTCCTTCTTT 59.301 50.000 0.00 0.00 0.00 2.52
1961 3491 0.250727 TCGGCCCTTGTCCTTCTTTG 60.251 55.000 0.00 0.00 0.00 2.77
2007 3537 2.033602 GGTGGTTCGTTCTGGGGG 59.966 66.667 0.00 0.00 0.00 5.40
2078 3608 1.373748 GAGAGCCGTGCCGTGTTTA 60.374 57.895 0.00 0.00 0.00 2.01
2094 3624 0.687920 TTTACATCGGTGCACTCCCA 59.312 50.000 17.98 0.00 0.00 4.37
2154 3687 9.973450 ATGTACATCTTGTGTAGAGTTGATATC 57.027 33.333 1.41 0.00 43.70 1.63
2167 3700 6.109359 AGAGTTGATATCACCTTGCTGTTAC 58.891 40.000 4.48 0.00 0.00 2.50
2203 3737 7.713734 AATATGCATCCCTAGATTTTCATGG 57.286 36.000 0.19 0.00 0.00 3.66
2209 3743 5.373812 TCCCTAGATTTTCATGGAAGTCC 57.626 43.478 5.65 0.00 0.00 3.85
2214 3748 8.001292 CCCTAGATTTTCATGGAAGTCCTATTT 58.999 37.037 5.65 0.00 36.82 1.40
2242 3776 2.938451 CGAGCTCAAATGCAACCTGATA 59.062 45.455 15.40 0.00 34.99 2.15
2247 3781 5.186409 AGCTCAAATGCAACCTGATAAACAT 59.814 36.000 0.00 0.00 34.99 2.71
2314 4052 7.721286 TTTTTGTGCGGATATTTTTGACAAT 57.279 28.000 0.00 0.00 0.00 2.71
2315 4053 7.721286 TTTTGTGCGGATATTTTTGACAATT 57.279 28.000 0.00 0.00 0.00 2.32
2316 4054 7.721286 TTTGTGCGGATATTTTTGACAATTT 57.279 28.000 0.00 0.00 0.00 1.82
2317 4055 7.721286 TTGTGCGGATATTTTTGACAATTTT 57.279 28.000 0.00 0.00 0.00 1.82
2318 4056 7.721286 TGTGCGGATATTTTTGACAATTTTT 57.279 28.000 0.00 0.00 0.00 1.94
2319 4057 8.818141 TGTGCGGATATTTTTGACAATTTTTA 57.182 26.923 0.00 0.00 0.00 1.52
2344 4082 7.036996 TCTATGTTGAACAAATTTCAGCACA 57.963 32.000 0.62 0.81 41.24 4.57
2351 4089 7.789273 TGAACAAATTTCAGCACAAAATGAT 57.211 28.000 0.00 0.00 0.00 2.45
2396 4137 4.751767 ATCAAAACCAGCACTCCAAAAA 57.248 36.364 0.00 0.00 0.00 1.94
2425 4166 4.342665 TCAAACTAGAATTTTTGGGGCGTT 59.657 37.500 0.00 0.00 34.14 4.84
2486 4264 4.629092 TGTGCTGAATTTTGCAAGCATAA 58.371 34.783 11.39 0.00 41.10 1.90
2596 4374 3.295093 TGAGTTCAGGAGGAGCAGATAG 58.705 50.000 0.00 0.00 0.00 2.08
2597 4375 2.627699 GAGTTCAGGAGGAGCAGATAGG 59.372 54.545 0.00 0.00 0.00 2.57
2598 4376 1.691434 GTTCAGGAGGAGCAGATAGGG 59.309 57.143 0.00 0.00 0.00 3.53
2599 4377 1.235756 TCAGGAGGAGCAGATAGGGA 58.764 55.000 0.00 0.00 0.00 4.20
2605 4775 4.297393 AGGAGGAGCAGATAGGGAGAATAT 59.703 45.833 0.00 0.00 0.00 1.28
2607 4777 5.518865 GAGGAGCAGATAGGGAGAATATCT 58.481 45.833 0.00 0.00 39.94 1.98
2614 4784 7.639113 CAGATAGGGAGAATATCTGGTACTC 57.361 44.000 12.93 0.00 46.84 2.59
2619 4789 5.669164 GGAGAATATCTGGTACTCCCATC 57.331 47.826 0.00 0.00 44.15 3.51
2621 4791 4.430441 AGAATATCTGGTACTCCCATCCC 58.570 47.826 0.00 0.00 44.15 3.85
2623 4793 5.318889 AGAATATCTGGTACTCCCATCCCTA 59.681 44.000 0.00 0.00 44.15 3.53
2625 4795 2.510330 TCTGGTACTCCCATCCCTAGA 58.490 52.381 0.00 0.00 44.15 2.43
2627 4797 2.178106 CTGGTACTCCCATCCCTAGAGT 59.822 54.545 0.00 0.00 44.15 3.24
2631 4801 3.887916 ACTCCCATCCCTAGAGTACTC 57.112 52.381 15.41 15.41 39.06 2.59
2634 4804 3.140143 TCCCATCCCTAGAGTACTCCTT 58.860 50.000 19.38 4.54 0.00 3.36
2635 4805 3.117093 TCCCATCCCTAGAGTACTCCTTG 60.117 52.174 19.38 9.46 0.00 3.61
2637 4807 3.639094 CCATCCCTAGAGTACTCCTTGTG 59.361 52.174 19.38 10.59 0.00 3.33
2639 4809 2.312140 TCCCTAGAGTACTCCTTGTGCT 59.688 50.000 19.38 1.50 44.25 4.40
2645 4815 3.127425 AGTACTCCTTGTGCTCCAAAC 57.873 47.619 0.00 0.00 36.97 2.93
2646 4816 2.706190 AGTACTCCTTGTGCTCCAAACT 59.294 45.455 0.00 0.00 36.97 2.66
2647 4817 2.262423 ACTCCTTGTGCTCCAAACTC 57.738 50.000 0.00 0.00 31.20 3.01
2648 4818 1.151668 CTCCTTGTGCTCCAAACTCG 58.848 55.000 0.00 0.00 31.20 4.18
2649 4819 0.250295 TCCTTGTGCTCCAAACTCGG 60.250 55.000 0.00 0.00 31.20 4.63
2650 4820 0.535102 CCTTGTGCTCCAAACTCGGT 60.535 55.000 0.00 0.00 31.20 4.69
2651 4821 1.270625 CCTTGTGCTCCAAACTCGGTA 60.271 52.381 0.00 0.00 31.20 4.02
2656 4826 1.828595 TGCTCCAAACTCGGTAGCATA 59.171 47.619 0.00 0.00 35.58 3.14
2657 4827 2.434336 TGCTCCAAACTCGGTAGCATAT 59.566 45.455 0.00 0.00 35.58 1.78
2660 4830 4.335594 GCTCCAAACTCGGTAGCATATTTT 59.664 41.667 0.00 0.00 32.61 1.82
2665 4835 8.962679 TCCAAACTCGGTAGCATATTTTTAAAT 58.037 29.630 0.00 0.00 0.00 1.40
2708 4878 6.389830 AAAATCTAGCACATTGACACAACA 57.610 33.333 0.00 0.00 0.00 3.33
2709 4879 6.579666 AAATCTAGCACATTGACACAACAT 57.420 33.333 0.00 0.00 0.00 2.71
2710 4880 5.808042 ATCTAGCACATTGACACAACATC 57.192 39.130 0.00 0.00 0.00 3.06
2711 4881 4.640364 TCTAGCACATTGACACAACATCA 58.360 39.130 0.00 0.00 0.00 3.07
2712 4882 5.062528 TCTAGCACATTGACACAACATCAA 58.937 37.500 0.00 0.00 40.25 2.57
2713 4883 4.859304 AGCACATTGACACAACATCAAT 57.141 36.364 0.00 0.00 45.57 2.57
2753 4923 9.545105 AAAATTCAAAACATTGCTTGAGATACA 57.455 25.926 2.99 0.00 33.30 2.29
2754 4924 9.545105 AAATTCAAAACATTGCTTGAGATACAA 57.455 25.926 2.99 0.00 33.30 2.41
2755 4925 9.545105 AATTCAAAACATTGCTTGAGATACAAA 57.455 25.926 2.99 0.00 38.08 2.83
2756 4926 8.939201 TTCAAAACATTGCTTGAGATACAAAA 57.061 26.923 2.99 0.00 38.08 2.44
2757 4927 8.939201 TCAAAACATTGCTTGAGATACAAAAA 57.061 26.923 0.00 0.00 38.08 1.94
2758 4928 9.545105 TCAAAACATTGCTTGAGATACAAAAAT 57.455 25.926 0.00 0.00 38.08 1.82
2759 4929 9.588774 CAAAACATTGCTTGAGATACAAAAATG 57.411 29.630 0.00 0.00 42.25 2.32
2760 4930 9.545105 AAAACATTGCTTGAGATACAAAAATGA 57.455 25.926 16.85 0.00 40.82 2.57
2761 4931 8.524870 AACATTGCTTGAGATACAAAAATGAC 57.475 30.769 16.85 0.00 40.82 3.06
2762 4932 7.660112 ACATTGCTTGAGATACAAAAATGACA 58.340 30.769 16.85 0.00 40.82 3.58
2763 4933 8.143193 ACATTGCTTGAGATACAAAAATGACAA 58.857 29.630 16.85 0.00 40.82 3.18
2764 4934 8.980610 CATTGCTTGAGATACAAAAATGACAAA 58.019 29.630 0.00 0.00 40.82 2.83
2765 4935 8.939201 TTGCTTGAGATACAAAAATGACAAAA 57.061 26.923 0.00 0.00 38.08 2.44
2766 4936 9.545105 TTGCTTGAGATACAAAAATGACAAAAT 57.455 25.926 0.00 0.00 38.08 1.82
2767 4937 9.195411 TGCTTGAGATACAAAAATGACAAAATC 57.805 29.630 0.00 0.00 38.08 2.17
2768 4938 8.368126 GCTTGAGATACAAAAATGACAAAATCG 58.632 33.333 0.00 0.00 38.08 3.34
2769 4939 9.611284 CTTGAGATACAAAAATGACAAAATCGA 57.389 29.630 0.00 0.00 38.08 3.59
2787 4957 9.563898 CAAAATCGATATCAATGTGATAATGGG 57.436 33.333 0.00 0.00 42.05 4.00
2788 4958 6.932356 ATCGATATCAATGTGATAATGGGC 57.068 37.500 0.00 0.00 42.05 5.36
2789 4959 5.185454 TCGATATCAATGTGATAATGGGCC 58.815 41.667 3.12 0.00 42.05 5.80
2790 4960 4.943093 CGATATCAATGTGATAATGGGCCA 59.057 41.667 9.61 9.61 42.05 5.36
2791 4961 5.415389 CGATATCAATGTGATAATGGGCCAA 59.585 40.000 11.89 0.00 42.05 4.52
2792 4962 6.072008 CGATATCAATGTGATAATGGGCCAAA 60.072 38.462 11.89 1.34 42.05 3.28
2793 4963 7.363181 CGATATCAATGTGATAATGGGCCAAAT 60.363 37.037 11.89 7.49 42.05 2.32
2794 4964 5.534207 TCAATGTGATAATGGGCCAAATC 57.466 39.130 11.89 17.28 0.00 2.17
2795 4965 5.210430 TCAATGTGATAATGGGCCAAATCT 58.790 37.500 24.45 9.19 0.00 2.40
2796 4966 6.372104 TCAATGTGATAATGGGCCAAATCTA 58.628 36.000 24.45 17.05 0.00 1.98
2797 4967 6.838090 TCAATGTGATAATGGGCCAAATCTAA 59.162 34.615 24.45 16.42 0.00 2.10
2798 4968 7.344093 TCAATGTGATAATGGGCCAAATCTAAA 59.656 33.333 24.45 14.65 0.00 1.85
2799 4969 6.713762 TGTGATAATGGGCCAAATCTAAAG 57.286 37.500 24.45 0.00 0.00 1.85
2800 4970 5.068987 TGTGATAATGGGCCAAATCTAAAGC 59.931 40.000 24.45 14.04 0.00 3.51
2801 4971 4.588528 TGATAATGGGCCAAATCTAAAGCC 59.411 41.667 24.45 0.00 44.99 4.35
2805 4975 2.672961 GGCCAAATCTAAAGCCCAAC 57.327 50.000 0.00 0.00 39.60 3.77
2806 4976 2.179427 GGCCAAATCTAAAGCCCAACT 58.821 47.619 0.00 0.00 39.60 3.16
2807 4977 2.567169 GGCCAAATCTAAAGCCCAACTT 59.433 45.455 0.00 0.00 41.70 2.66
2808 4978 3.767131 GGCCAAATCTAAAGCCCAACTTA 59.233 43.478 0.00 0.00 37.75 2.24
2809 4979 4.405680 GGCCAAATCTAAAGCCCAACTTAT 59.594 41.667 0.00 0.00 37.75 1.73
2810 4980 5.351458 GCCAAATCTAAAGCCCAACTTATG 58.649 41.667 0.00 0.00 37.75 1.90
2811 4981 5.105351 GCCAAATCTAAAGCCCAACTTATGT 60.105 40.000 0.00 0.00 37.75 2.29
2812 4982 6.574269 GCCAAATCTAAAGCCCAACTTATGTT 60.574 38.462 0.00 0.00 37.75 2.71
2830 5000 9.350357 ACTTATGTTGTGTACTATTTACTGTCG 57.650 33.333 0.00 0.00 0.00 4.35
2831 5001 9.563898 CTTATGTTGTGTACTATTTACTGTCGA 57.436 33.333 0.00 0.00 0.00 4.20
2832 5002 9.911138 TTATGTTGTGTACTATTTACTGTCGAA 57.089 29.630 0.00 0.00 0.00 3.71
2833 5003 8.997621 ATGTTGTGTACTATTTACTGTCGAAT 57.002 30.769 0.00 0.00 0.00 3.34
2834 5004 8.821147 TGTTGTGTACTATTTACTGTCGAATT 57.179 30.769 0.00 0.00 0.00 2.17
2835 5005 9.263538 TGTTGTGTACTATTTACTGTCGAATTT 57.736 29.630 0.00 0.00 0.00 1.82
2836 5006 9.525007 GTTGTGTACTATTTACTGTCGAATTTG 57.475 33.333 0.00 0.00 0.00 2.32
2837 5007 8.821147 TGTGTACTATTTACTGTCGAATTTGT 57.179 30.769 0.00 0.00 0.00 2.83
2838 5008 8.918658 TGTGTACTATTTACTGTCGAATTTGTC 58.081 33.333 0.00 0.00 0.00 3.18
2839 5009 8.918658 GTGTACTATTTACTGTCGAATTTGTCA 58.081 33.333 0.00 0.00 0.00 3.58
2840 5010 9.647797 TGTACTATTTACTGTCGAATTTGTCAT 57.352 29.630 0.00 0.00 0.00 3.06
2849 5019 8.728088 ACTGTCGAATTTGTCATTTATGTTTC 57.272 30.769 0.00 0.00 0.00 2.78
2850 5020 8.567948 ACTGTCGAATTTGTCATTTATGTTTCT 58.432 29.630 0.00 0.00 0.00 2.52
2851 5021 8.948853 TGTCGAATTTGTCATTTATGTTTCTC 57.051 30.769 0.00 0.00 0.00 2.87
2852 5022 8.563732 TGTCGAATTTGTCATTTATGTTTCTCA 58.436 29.630 0.00 0.00 0.00 3.27
2853 5023 9.393249 GTCGAATTTGTCATTTATGTTTCTCAA 57.607 29.630 0.00 0.00 0.00 3.02
2854 5024 9.611284 TCGAATTTGTCATTTATGTTTCTCAAG 57.389 29.630 0.00 0.00 0.00 3.02
2855 5025 8.368126 CGAATTTGTCATTTATGTTTCTCAAGC 58.632 33.333 0.00 0.00 0.00 4.01
2856 5026 9.415544 GAATTTGTCATTTATGTTTCTCAAGCT 57.584 29.630 0.00 0.00 0.00 3.74
2859 5029 9.844790 TTTGTCATTTATGTTTCTCAAGCTATG 57.155 29.630 0.00 0.00 0.00 2.23
2860 5030 8.565896 TGTCATTTATGTTTCTCAAGCTATGT 57.434 30.769 0.00 0.00 0.00 2.29
2861 5031 9.013229 TGTCATTTATGTTTCTCAAGCTATGTT 57.987 29.630 0.00 0.00 0.00 2.71
2862 5032 9.846248 GTCATTTATGTTTCTCAAGCTATGTTT 57.154 29.630 0.00 0.00 0.00 2.83
2864 5034 9.003112 CATTTATGTTTCTCAAGCTATGTTTCG 57.997 33.333 0.00 0.00 0.00 3.46
2865 5035 7.899178 TTATGTTTCTCAAGCTATGTTTCGA 57.101 32.000 0.00 0.00 0.00 3.71
2866 5036 6.801539 ATGTTTCTCAAGCTATGTTTCGAA 57.198 33.333 0.00 0.00 0.00 3.71
2867 5037 6.801539 TGTTTCTCAAGCTATGTTTCGAAT 57.198 33.333 0.00 0.00 0.00 3.34
2868 5038 7.202016 TGTTTCTCAAGCTATGTTTCGAATT 57.798 32.000 0.00 0.00 0.00 2.17
2869 5039 7.648142 TGTTTCTCAAGCTATGTTTCGAATTT 58.352 30.769 0.00 0.00 0.00 1.82
2870 5040 8.134895 TGTTTCTCAAGCTATGTTTCGAATTTT 58.865 29.630 0.00 0.00 0.00 1.82
2871 5041 8.420189 GTTTCTCAAGCTATGTTTCGAATTTTG 58.580 33.333 0.00 0.00 0.00 2.44
2872 5042 7.433708 TCTCAAGCTATGTTTCGAATTTTGA 57.566 32.000 0.00 1.73 0.00 2.69
2873 5043 8.044060 TCTCAAGCTATGTTTCGAATTTTGAT 57.956 30.769 0.00 0.00 0.00 2.57
2874 5044 8.514594 TCTCAAGCTATGTTTCGAATTTTGATT 58.485 29.630 0.00 0.00 0.00 2.57
2875 5045 9.132521 CTCAAGCTATGTTTCGAATTTTGATTT 57.867 29.630 0.00 0.00 0.00 2.17
2876 5046 9.128107 TCAAGCTATGTTTCGAATTTTGATTTC 57.872 29.630 0.00 0.00 0.00 2.17
2877 5047 8.914654 CAAGCTATGTTTCGAATTTTGATTTCA 58.085 29.630 0.00 0.00 0.00 2.69
2878 5048 9.474920 AAGCTATGTTTCGAATTTTGATTTCAA 57.525 25.926 0.00 0.00 0.00 2.69
2879 5049 9.474920 AGCTATGTTTCGAATTTTGATTTCAAA 57.525 25.926 0.00 1.66 43.36 2.69
2884 5054 9.699985 TGTTTCGAATTTTGATTTCAAATGTTG 57.300 25.926 0.00 2.99 44.30 3.33
2885 5055 9.701355 GTTTCGAATTTTGATTTCAAATGTTGT 57.299 25.926 0.00 0.00 44.30 3.32
2886 5056 9.699985 TTTCGAATTTTGATTTCAAATGTTGTG 57.300 25.926 0.00 2.23 44.30 3.33
2887 5057 8.640091 TCGAATTTTGATTTCAAATGTTGTGA 57.360 26.923 6.57 4.00 44.30 3.58
2888 5058 8.538856 TCGAATTTTGATTTCAAATGTTGTGAC 58.461 29.630 6.57 0.00 44.30 3.67
2889 5059 8.326713 CGAATTTTGATTTCAAATGTTGTGACA 58.673 29.630 6.57 0.00 44.30 3.58
2890 5060 9.985318 GAATTTTGATTTCAAATGTTGTGACAA 57.015 25.926 6.57 0.00 44.30 3.18
2891 5061 9.991388 AATTTTGATTTCAAATGTTGTGACAAG 57.009 25.926 0.00 0.00 44.30 3.16
2892 5062 8.768957 TTTTGATTTCAAATGTTGTGACAAGA 57.231 26.923 0.00 0.00 44.30 3.02
2893 5063 8.945481 TTTGATTTCAAATGTTGTGACAAGAT 57.055 26.923 1.71 1.71 40.55 2.40
2895 5065 9.462174 TTGATTTCAAATGTTGTGACAAGATAC 57.538 29.630 8.45 0.00 39.66 2.24
2896 5066 8.628280 TGATTTCAAATGTTGTGACAAGATACA 58.372 29.630 8.45 0.00 39.66 2.29
2897 5067 9.462174 GATTTCAAATGTTGTGACAAGATACAA 57.538 29.630 8.45 0.00 39.66 2.41
2902 5072 4.128554 GTTGTGACAAGATACAACGGTG 57.871 45.455 0.00 0.00 44.70 4.94
2903 5073 3.462483 TGTGACAAGATACAACGGTGT 57.538 42.857 12.53 12.53 42.09 4.16
2904 5074 3.799366 TGTGACAAGATACAACGGTGTT 58.201 40.909 13.38 0.00 39.30 3.32
2905 5075 3.558006 TGTGACAAGATACAACGGTGTTG 59.442 43.478 13.38 6.41 39.30 3.33
2906 5076 3.558418 GTGACAAGATACAACGGTGTTGT 59.442 43.478 13.38 10.41 39.30 3.32
2907 5077 3.558006 TGACAAGATACAACGGTGTTGTG 59.442 43.478 13.38 7.69 39.30 3.33
2908 5078 3.537580 ACAAGATACAACGGTGTTGTGT 58.462 40.909 13.38 16.73 39.30 3.72
2909 5079 3.558418 ACAAGATACAACGGTGTTGTGTC 59.442 43.478 23.53 23.53 39.73 3.67
2910 5080 3.746045 AGATACAACGGTGTTGTGTCT 57.254 42.857 26.27 26.27 43.11 3.41
2911 5081 4.859304 AGATACAACGGTGTTGTGTCTA 57.141 40.909 28.84 11.44 45.04 2.59
2912 5082 5.401531 AGATACAACGGTGTTGTGTCTAT 57.598 39.130 28.84 14.90 45.04 1.98
2913 5083 5.168569 AGATACAACGGTGTTGTGTCTATG 58.831 41.667 28.84 0.91 45.04 2.23
2914 5084 3.188159 ACAACGGTGTTGTGTCTATGT 57.812 42.857 14.00 0.00 32.58 2.29
2915 5085 2.869801 ACAACGGTGTTGTGTCTATGTG 59.130 45.455 14.00 0.00 32.58 3.21
2916 5086 1.508632 ACGGTGTTGTGTCTATGTGC 58.491 50.000 0.00 0.00 0.00 4.57
2917 5087 1.070134 ACGGTGTTGTGTCTATGTGCT 59.930 47.619 0.00 0.00 0.00 4.40
2918 5088 1.460743 CGGTGTTGTGTCTATGTGCTG 59.539 52.381 0.00 0.00 0.00 4.41
2919 5089 1.806542 GGTGTTGTGTCTATGTGCTGG 59.193 52.381 0.00 0.00 0.00 4.85
2920 5090 2.549992 GGTGTTGTGTCTATGTGCTGGA 60.550 50.000 0.00 0.00 0.00 3.86
2921 5091 3.338249 GTGTTGTGTCTATGTGCTGGAT 58.662 45.455 0.00 0.00 0.00 3.41
2922 5092 3.753272 GTGTTGTGTCTATGTGCTGGATT 59.247 43.478 0.00 0.00 0.00 3.01
2923 5093 4.216257 GTGTTGTGTCTATGTGCTGGATTT 59.784 41.667 0.00 0.00 0.00 2.17
2924 5094 4.826733 TGTTGTGTCTATGTGCTGGATTTT 59.173 37.500 0.00 0.00 0.00 1.82
2925 5095 5.301551 TGTTGTGTCTATGTGCTGGATTTTT 59.698 36.000 0.00 0.00 0.00 1.94
2978 5148 3.354678 CAAGTTTGGAGCACCGGG 58.645 61.111 6.32 0.00 39.42 5.73
2979 5149 1.228124 CAAGTTTGGAGCACCGGGA 60.228 57.895 6.32 0.00 39.42 5.14
2980 5150 1.073199 AAGTTTGGAGCACCGGGAG 59.927 57.895 6.32 0.00 39.42 4.30
2981 5151 3.056328 GTTTGGAGCACCGGGAGC 61.056 66.667 6.32 10.14 39.42 4.70
2982 5152 3.565214 TTTGGAGCACCGGGAGCA 61.565 61.111 21.10 0.19 39.42 4.26
2983 5153 3.842925 TTTGGAGCACCGGGAGCAC 62.843 63.158 21.10 15.32 39.42 4.40
3001 5171 4.272245 CCTAGGGGTGGGAGTACG 57.728 66.667 0.00 0.00 0.00 3.67
3002 5172 1.616921 CCTAGGGGTGGGAGTACGA 59.383 63.158 0.00 0.00 0.00 3.43
3003 5173 0.467659 CCTAGGGGTGGGAGTACGAG 60.468 65.000 0.00 0.00 0.00 4.18
3004 5174 0.549950 CTAGGGGTGGGAGTACGAGA 59.450 60.000 0.00 0.00 0.00 4.04
3005 5175 1.145325 CTAGGGGTGGGAGTACGAGAT 59.855 57.143 0.00 0.00 0.00 2.75
3006 5176 1.229131 AGGGGTGGGAGTACGAGATA 58.771 55.000 0.00 0.00 0.00 1.98
3007 5177 1.787676 AGGGGTGGGAGTACGAGATAT 59.212 52.381 0.00 0.00 0.00 1.63
3008 5178 2.179424 AGGGGTGGGAGTACGAGATATT 59.821 50.000 0.00 0.00 0.00 1.28
3009 5179 2.561858 GGGGTGGGAGTACGAGATATTC 59.438 54.545 0.00 0.00 0.00 1.75
3010 5180 3.498334 GGGTGGGAGTACGAGATATTCT 58.502 50.000 0.00 0.00 0.00 2.40
3011 5181 3.506844 GGGTGGGAGTACGAGATATTCTC 59.493 52.174 0.00 0.00 40.06 2.87
3012 5182 3.506844 GGTGGGAGTACGAGATATTCTCC 59.493 52.174 0.00 0.00 40.34 3.71
3048 5226 1.266718 CTGTGGGTTGGTTTCATCACG 59.733 52.381 0.00 0.00 0.00 4.35
3065 5243 7.755582 TCATCACGTGAAACATAACTATCTG 57.244 36.000 24.13 11.28 35.74 2.90
3076 5254 9.109393 GAAACATAACTATCTGAGCCATGTTTA 57.891 33.333 9.11 0.00 44.71 2.01
3118 5296 8.535690 AACATAGCTAGACCTATTTAAATCGC 57.464 34.615 3.39 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.175240 CTCGGTTCGCTGCGACTG 61.175 66.667 25.94 22.25 34.89 3.51
13 14 4.421479 CCTCGGTTCGCTGCGACT 62.421 66.667 25.94 0.00 34.89 4.18
21 22 4.760047 CACCCTGGCCTCGGTTCG 62.760 72.222 11.26 0.00 0.00 3.95
22 23 2.406002 TTTCACCCTGGCCTCGGTTC 62.406 60.000 11.26 0.00 0.00 3.62
23 24 2.002018 TTTTCACCCTGGCCTCGGTT 62.002 55.000 11.26 0.00 0.00 4.44
24 25 2.457323 TTTTCACCCTGGCCTCGGT 61.457 57.895 3.32 6.37 0.00 4.69
25 26 1.971695 GTTTTCACCCTGGCCTCGG 60.972 63.158 3.32 5.60 0.00 4.63
26 27 1.971695 GGTTTTCACCCTGGCCTCG 60.972 63.158 3.32 0.00 37.03 4.63
27 28 4.097218 GGTTTTCACCCTGGCCTC 57.903 61.111 3.32 0.00 37.03 4.70
35 36 3.053896 CTCGCCGGGGTTTTCACC 61.054 66.667 19.13 0.00 43.37 4.02
36 37 1.574702 CTTCTCGCCGGGGTTTTCAC 61.575 60.000 19.13 0.00 0.00 3.18
37 38 1.302192 CTTCTCGCCGGGGTTTTCA 60.302 57.895 19.13 0.00 0.00 2.69
38 39 2.038837 CCTTCTCGCCGGGGTTTTC 61.039 63.158 19.13 0.00 0.00 2.29
39 40 2.033602 CCTTCTCGCCGGGGTTTT 59.966 61.111 19.13 0.00 0.00 2.43
40 41 2.926242 TCCTTCTCGCCGGGGTTT 60.926 61.111 19.13 0.00 0.00 3.27
41 42 3.391382 CTCCTTCTCGCCGGGGTT 61.391 66.667 19.13 0.00 0.00 4.11
42 43 4.377760 TCTCCTTCTCGCCGGGGT 62.378 66.667 19.13 0.00 0.00 4.95
43 44 3.532155 CTCTCCTTCTCGCCGGGG 61.532 72.222 13.31 13.31 0.00 5.73
44 45 2.440430 TCTCTCCTTCTCGCCGGG 60.440 66.667 2.18 0.00 0.00 5.73
45 46 2.485795 CCTCTCTCCTTCTCGCCGG 61.486 68.421 0.00 0.00 0.00 6.13
46 47 1.751162 ACCTCTCTCCTTCTCGCCG 60.751 63.158 0.00 0.00 0.00 6.46
47 48 1.813192 CACCTCTCTCCTTCTCGCC 59.187 63.158 0.00 0.00 0.00 5.54
48 49 1.140804 GCACCTCTCTCCTTCTCGC 59.859 63.158 0.00 0.00 0.00 5.03
49 50 1.431440 CGCACCTCTCTCCTTCTCG 59.569 63.158 0.00 0.00 0.00 4.04
50 51 0.681564 TCCGCACCTCTCTCCTTCTC 60.682 60.000 0.00 0.00 0.00 2.87
51 52 0.682855 CTCCGCACCTCTCTCCTTCT 60.683 60.000 0.00 0.00 0.00 2.85
52 53 1.813192 CTCCGCACCTCTCTCCTTC 59.187 63.158 0.00 0.00 0.00 3.46
53 54 2.355193 GCTCCGCACCTCTCTCCTT 61.355 63.158 0.00 0.00 0.00 3.36
54 55 2.757917 GCTCCGCACCTCTCTCCT 60.758 66.667 0.00 0.00 0.00 3.69
55 56 3.071206 TGCTCCGCACCTCTCTCC 61.071 66.667 0.00 0.00 31.71 3.71
56 57 1.391157 ATCTGCTCCGCACCTCTCTC 61.391 60.000 0.00 0.00 33.79 3.20
57 58 1.381056 ATCTGCTCCGCACCTCTCT 60.381 57.895 0.00 0.00 33.79 3.10
58 59 1.227205 CATCTGCTCCGCACCTCTC 60.227 63.158 0.00 0.00 33.79 3.20
59 60 1.674764 CTCATCTGCTCCGCACCTCT 61.675 60.000 0.00 0.00 33.79 3.69
60 61 1.227205 CTCATCTGCTCCGCACCTC 60.227 63.158 0.00 0.00 33.79 3.85
61 62 2.729479 CCTCATCTGCTCCGCACCT 61.729 63.158 0.00 0.00 33.79 4.00
62 63 2.202987 CCTCATCTGCTCCGCACC 60.203 66.667 0.00 0.00 33.79 5.01
63 64 1.227205 CTCCTCATCTGCTCCGCAC 60.227 63.158 0.00 0.00 33.79 5.34
64 65 3.086391 GCTCCTCATCTGCTCCGCA 62.086 63.158 0.00 0.00 36.92 5.69
65 66 2.280052 GCTCCTCATCTGCTCCGC 60.280 66.667 0.00 0.00 0.00 5.54
66 67 2.420890 GGCTCCTCATCTGCTCCG 59.579 66.667 0.00 0.00 0.00 4.63
67 68 2.420890 CGGCTCCTCATCTGCTCC 59.579 66.667 0.00 0.00 0.00 4.70
68 69 2.420890 CCGGCTCCTCATCTGCTC 59.579 66.667 0.00 0.00 0.00 4.26
69 70 3.859414 GCCGGCTCCTCATCTGCT 61.859 66.667 22.15 0.00 0.00 4.24
70 71 4.925861 GGCCGGCTCCTCATCTGC 62.926 72.222 28.56 0.41 0.00 4.26
71 72 4.247380 GGGCCGGCTCCTCATCTG 62.247 72.222 28.56 0.00 0.00 2.90
72 73 4.488911 AGGGCCGGCTCCTCATCT 62.489 66.667 26.35 0.00 0.00 2.90
73 74 4.247380 CAGGGCCGGCTCCTCATC 62.247 72.222 27.68 10.47 31.06 2.92
104 105 4.849310 TAAGCACGGGGCCGATGC 62.849 66.667 19.87 19.87 46.50 3.91
105 106 2.111043 ATAAGCACGGGGCCGATG 59.889 61.111 0.00 0.00 46.50 3.84
106 107 2.111043 CATAAGCACGGGGCCGAT 59.889 61.111 0.00 0.00 46.50 4.18
107 108 3.379865 GACATAAGCACGGGGCCGA 62.380 63.158 0.00 0.00 46.50 5.54
108 109 2.895372 GACATAAGCACGGGGCCG 60.895 66.667 0.00 0.00 46.50 6.13
109 110 2.516225 GGACATAAGCACGGGGCC 60.516 66.667 0.00 0.00 46.50 5.80
110 111 2.112815 GTGGACATAAGCACGGGGC 61.113 63.158 0.00 0.00 45.30 5.80
111 112 1.813753 CGTGGACATAAGCACGGGG 60.814 63.158 0.00 0.00 37.40 5.73
112 113 2.461110 GCGTGGACATAAGCACGGG 61.461 63.158 0.00 0.00 40.85 5.28
113 114 2.461110 GGCGTGGACATAAGCACGG 61.461 63.158 0.00 0.00 40.85 4.94
114 115 2.798501 CGGCGTGGACATAAGCACG 61.799 63.158 0.00 0.00 43.04 5.34
115 116 1.017177 TTCGGCGTGGACATAAGCAC 61.017 55.000 6.85 0.00 0.00 4.40
116 117 0.739462 CTTCGGCGTGGACATAAGCA 60.739 55.000 6.85 0.00 0.00 3.91
117 118 1.429148 CCTTCGGCGTGGACATAAGC 61.429 60.000 6.85 0.00 0.00 3.09
118 119 0.810031 CCCTTCGGCGTGGACATAAG 60.810 60.000 19.54 8.85 0.00 1.73
119 120 1.219664 CCCTTCGGCGTGGACATAA 59.780 57.895 19.54 0.00 0.00 1.90
120 121 2.897207 CCCTTCGGCGTGGACATA 59.103 61.111 19.54 0.00 0.00 2.29
130 131 3.839432 GTCCTCCTCGCCCTTCGG 61.839 72.222 0.00 0.00 39.05 4.30
131 132 4.194720 CGTCCTCCTCGCCCTTCG 62.195 72.222 0.00 0.00 40.15 3.79
132 133 3.839432 CCGTCCTCCTCGCCCTTC 61.839 72.222 0.00 0.00 0.00 3.46
148 149 3.785189 TTTCTCCTATCGGCGCGCC 62.785 63.158 39.82 39.82 0.00 6.53
149 150 1.222115 ATTTTCTCCTATCGGCGCGC 61.222 55.000 25.94 25.94 0.00 6.86
150 151 1.192534 GAATTTTCTCCTATCGGCGCG 59.807 52.381 0.00 0.00 0.00 6.86
151 152 2.484889 AGAATTTTCTCCTATCGGCGC 58.515 47.619 0.00 0.00 29.94 6.53
152 153 3.248602 CCAAGAATTTTCTCCTATCGGCG 59.751 47.826 0.00 0.00 36.28 6.46
153 154 4.273724 GTCCAAGAATTTTCTCCTATCGGC 59.726 45.833 0.00 0.00 36.28 5.54
154 155 4.508124 CGTCCAAGAATTTTCTCCTATCGG 59.492 45.833 0.00 0.00 36.28 4.18
155 156 4.508124 CCGTCCAAGAATTTTCTCCTATCG 59.492 45.833 0.00 0.00 36.28 2.92
156 157 5.671493 TCCGTCCAAGAATTTTCTCCTATC 58.329 41.667 0.00 0.00 36.28 2.08
157 158 5.693769 TCCGTCCAAGAATTTTCTCCTAT 57.306 39.130 0.00 0.00 36.28 2.57
158 159 5.045869 ACATCCGTCCAAGAATTTTCTCCTA 60.046 40.000 0.00 0.00 36.28 2.94
159 160 4.263506 ACATCCGTCCAAGAATTTTCTCCT 60.264 41.667 0.00 0.00 36.28 3.69
160 161 4.010349 ACATCCGTCCAAGAATTTTCTCC 58.990 43.478 0.00 0.00 36.28 3.71
161 162 4.455877 ACACATCCGTCCAAGAATTTTCTC 59.544 41.667 0.00 0.00 36.28 2.87
162 163 4.216257 CACACATCCGTCCAAGAATTTTCT 59.784 41.667 0.00 0.00 39.74 2.52
163 164 4.023193 ACACACATCCGTCCAAGAATTTTC 60.023 41.667 0.00 0.00 0.00 2.29
164 165 3.888930 ACACACATCCGTCCAAGAATTTT 59.111 39.130 0.00 0.00 0.00 1.82
165 166 3.253188 CACACACATCCGTCCAAGAATTT 59.747 43.478 0.00 0.00 0.00 1.82
166 167 2.813754 CACACACATCCGTCCAAGAATT 59.186 45.455 0.00 0.00 0.00 2.17
167 168 2.224523 ACACACACATCCGTCCAAGAAT 60.225 45.455 0.00 0.00 0.00 2.40
168 169 1.140052 ACACACACATCCGTCCAAGAA 59.860 47.619 0.00 0.00 0.00 2.52
169 170 0.756294 ACACACACATCCGTCCAAGA 59.244 50.000 0.00 0.00 0.00 3.02
170 171 0.867746 CACACACACATCCGTCCAAG 59.132 55.000 0.00 0.00 0.00 3.61
171 172 0.533978 CCACACACACATCCGTCCAA 60.534 55.000 0.00 0.00 0.00 3.53
172 173 1.070615 CCACACACACATCCGTCCA 59.929 57.895 0.00 0.00 0.00 4.02
173 174 1.671054 CCCACACACACATCCGTCC 60.671 63.158 0.00 0.00 0.00 4.79
174 175 1.671054 CCCCACACACACATCCGTC 60.671 63.158 0.00 0.00 0.00 4.79
175 176 2.429930 CCCCACACACACATCCGT 59.570 61.111 0.00 0.00 0.00 4.69
176 177 2.359850 CCCCCACACACACATCCG 60.360 66.667 0.00 0.00 0.00 4.18
196 197 2.741433 GGGTTTTCTTGACACCCCC 58.259 57.895 6.10 0.00 44.16 5.40
199 200 2.511659 GTAGGGGGTTTTCTTGACACC 58.488 52.381 0.00 0.00 39.95 4.16
200 201 2.511659 GGTAGGGGGTTTTCTTGACAC 58.488 52.381 0.00 0.00 0.00 3.67
201 202 1.426215 GGGTAGGGGGTTTTCTTGACA 59.574 52.381 0.00 0.00 0.00 3.58
202 203 1.426215 TGGGTAGGGGGTTTTCTTGAC 59.574 52.381 0.00 0.00 0.00 3.18
203 204 1.835895 TGGGTAGGGGGTTTTCTTGA 58.164 50.000 0.00 0.00 0.00 3.02
204 205 2.687003 TTGGGTAGGGGGTTTTCTTG 57.313 50.000 0.00 0.00 0.00 3.02
205 206 3.271225 CCTATTGGGTAGGGGGTTTTCTT 59.729 47.826 0.00 0.00 45.38 2.52
206 207 2.856864 CCTATTGGGTAGGGGGTTTTCT 59.143 50.000 0.00 0.00 45.38 2.52
207 208 3.308035 CCTATTGGGTAGGGGGTTTTC 57.692 52.381 0.00 0.00 45.38 2.29
216 217 4.505742 GCTTCTTGGGATCCTATTGGGTAG 60.506 50.000 12.58 0.00 36.25 3.18
217 218 3.394606 GCTTCTTGGGATCCTATTGGGTA 59.605 47.826 12.58 0.00 36.25 3.69
218 219 2.175715 GCTTCTTGGGATCCTATTGGGT 59.824 50.000 12.58 0.00 36.25 4.51
219 220 2.811873 CGCTTCTTGGGATCCTATTGGG 60.812 54.545 12.58 2.62 0.00 4.12
220 221 2.498167 CGCTTCTTGGGATCCTATTGG 58.502 52.381 12.58 0.00 0.00 3.16
221 222 2.498167 CCGCTTCTTGGGATCCTATTG 58.502 52.381 12.58 1.93 0.00 1.90
222 223 1.202818 GCCGCTTCTTGGGATCCTATT 60.203 52.381 12.58 0.00 0.00 1.73
223 224 0.398318 GCCGCTTCTTGGGATCCTAT 59.602 55.000 12.58 0.00 0.00 2.57
224 225 1.830145 GCCGCTTCTTGGGATCCTA 59.170 57.895 12.58 1.47 0.00 2.94
225 226 2.592308 GCCGCTTCTTGGGATCCT 59.408 61.111 12.58 0.00 0.00 3.24
226 227 2.897350 CGCCGCTTCTTGGGATCC 60.897 66.667 1.92 1.92 0.00 3.36
227 228 2.897350 CCGCCGCTTCTTGGGATC 60.897 66.667 0.00 0.00 0.00 3.36
239 240 4.647615 CCATCTACCGAGCCGCCG 62.648 72.222 0.00 0.00 0.00 6.46
240 241 4.971125 GCCATCTACCGAGCCGCC 62.971 72.222 0.00 0.00 0.00 6.13
243 244 4.971125 GGCGCCATCTACCGAGCC 62.971 72.222 24.80 0.00 37.61 4.70
260 261 4.735132 TTTCTGGGCTCGGCGTCG 62.735 66.667 1.15 1.15 37.82 5.12
261 262 3.119096 GTTTCTGGGCTCGGCGTC 61.119 66.667 6.85 0.00 0.00 5.19
262 263 3.936203 TGTTTCTGGGCTCGGCGT 61.936 61.111 6.85 0.00 0.00 5.68
263 264 3.423154 GTGTTTCTGGGCTCGGCG 61.423 66.667 0.00 0.00 0.00 6.46
264 265 3.423154 CGTGTTTCTGGGCTCGGC 61.423 66.667 0.00 0.00 0.00 5.54
265 266 1.738099 CTCGTGTTTCTGGGCTCGG 60.738 63.158 0.00 0.00 0.00 4.63
266 267 1.738099 CCTCGTGTTTCTGGGCTCG 60.738 63.158 0.00 0.00 0.00 5.03
267 268 0.670854 GACCTCGTGTTTCTGGGCTC 60.671 60.000 0.00 0.00 0.00 4.70
268 269 1.371558 GACCTCGTGTTTCTGGGCT 59.628 57.895 0.00 0.00 0.00 5.19
269 270 1.671379 GGACCTCGTGTTTCTGGGC 60.671 63.158 0.00 0.00 0.00 5.36
270 271 1.374252 CGGACCTCGTGTTTCTGGG 60.374 63.158 0.00 0.00 0.00 4.45
271 272 1.374252 CCGGACCTCGTGTTTCTGG 60.374 63.158 0.00 0.00 37.11 3.86
272 273 0.032952 TTCCGGACCTCGTGTTTCTG 59.967 55.000 1.83 0.00 37.11 3.02
273 274 0.974383 ATTCCGGACCTCGTGTTTCT 59.026 50.000 1.83 0.00 37.11 2.52
274 275 1.356938 GATTCCGGACCTCGTGTTTC 58.643 55.000 1.83 0.00 37.11 2.78
275 276 0.389426 CGATTCCGGACCTCGTGTTT 60.389 55.000 21.79 0.00 37.11 2.83
276 277 1.214589 CGATTCCGGACCTCGTGTT 59.785 57.895 21.79 0.00 37.11 3.32
277 278 2.882876 CGATTCCGGACCTCGTGT 59.117 61.111 21.79 0.00 37.11 4.49
301 302 4.373116 TGTCGGCCGTTCCTGCTC 62.373 66.667 27.15 7.15 0.00 4.26
302 303 4.681978 GTGTCGGCCGTTCCTGCT 62.682 66.667 27.15 0.00 0.00 4.24
345 346 4.864334 GTCCCCCATCTGCTGCCG 62.864 72.222 0.00 0.00 0.00 5.69
346 347 4.864334 CGTCCCCCATCTGCTGCC 62.864 72.222 0.00 0.00 0.00 4.85
347 348 4.864334 CCGTCCCCCATCTGCTGC 62.864 72.222 0.00 0.00 0.00 5.25
348 349 4.864334 GCCGTCCCCCATCTGCTG 62.864 72.222 0.00 0.00 0.00 4.41
368 369 4.733371 TTGATGTCGGCGCTGCGA 62.733 61.111 28.07 8.20 0.00 5.10
369 370 4.214383 CTTGATGTCGGCGCTGCG 62.214 66.667 19.17 19.17 0.00 5.18
370 371 3.088500 GACTTGATGTCGGCGCTGC 62.089 63.158 12.58 7.57 35.81 5.25
371 372 2.456119 GGACTTGATGTCGGCGCTG 61.456 63.158 10.86 10.86 46.24 5.18
372 373 2.125512 GGACTTGATGTCGGCGCT 60.126 61.111 7.64 0.00 46.24 5.92
373 374 3.195698 GGGACTTGATGTCGGCGC 61.196 66.667 0.00 0.00 46.24 6.53
374 375 1.811266 CAGGGACTTGATGTCGGCG 60.811 63.158 0.00 0.00 46.24 6.46
375 376 2.109126 GCAGGGACTTGATGTCGGC 61.109 63.158 0.00 0.00 46.24 5.54
376 377 1.450312 GGCAGGGACTTGATGTCGG 60.450 63.158 0.00 0.00 46.24 4.79
377 378 1.450312 GGGCAGGGACTTGATGTCG 60.450 63.158 0.00 0.00 46.24 4.35
378 379 1.450312 CGGGCAGGGACTTGATGTC 60.450 63.158 0.00 0.00 44.63 3.06
379 380 1.903877 CTCGGGCAGGGACTTGATGT 61.904 60.000 0.00 0.00 34.60 3.06
380 381 1.153289 CTCGGGCAGGGACTTGATG 60.153 63.158 0.00 0.00 34.60 3.07
381 382 1.201429 AACTCGGGCAGGGACTTGAT 61.201 55.000 0.00 0.00 34.60 2.57
382 383 1.415672 AAACTCGGGCAGGGACTTGA 61.416 55.000 0.00 0.00 34.60 3.02
383 384 0.537371 AAAACTCGGGCAGGGACTTG 60.537 55.000 0.00 0.00 34.60 3.16
384 385 0.537371 CAAAACTCGGGCAGGGACTT 60.537 55.000 0.00 0.00 34.60 3.01
385 386 1.073199 CAAAACTCGGGCAGGGACT 59.927 57.895 0.00 0.00 43.88 3.85
386 387 0.536460 TTCAAAACTCGGGCAGGGAC 60.536 55.000 0.00 0.00 0.00 4.46
387 388 0.250727 CTTCAAAACTCGGGCAGGGA 60.251 55.000 0.00 0.00 0.00 4.20
388 389 1.866853 GCTTCAAAACTCGGGCAGGG 61.867 60.000 0.00 0.00 0.00 4.45
389 390 1.581447 GCTTCAAAACTCGGGCAGG 59.419 57.895 0.00 0.00 0.00 4.85
390 391 0.890996 AGGCTTCAAAACTCGGGCAG 60.891 55.000 0.00 0.00 0.00 4.85
391 392 1.150536 AGGCTTCAAAACTCGGGCA 59.849 52.632 0.00 0.00 0.00 5.36
392 393 1.581447 CAGGCTTCAAAACTCGGGC 59.419 57.895 0.00 0.00 0.00 6.13
393 394 1.866853 GCCAGGCTTCAAAACTCGGG 61.867 60.000 3.29 0.00 0.00 5.14
394 395 1.581447 GCCAGGCTTCAAAACTCGG 59.419 57.895 3.29 0.00 0.00 4.63
395 396 1.172180 TGGCCAGGCTTCAAAACTCG 61.172 55.000 12.43 0.00 0.00 4.18
396 397 0.600057 CTGGCCAGGCTTCAAAACTC 59.400 55.000 26.14 0.00 0.00 3.01
397 398 1.466851 GCTGGCCAGGCTTCAAAACT 61.467 55.000 33.46 0.00 0.00 2.66
398 399 1.005748 GCTGGCCAGGCTTCAAAAC 60.006 57.895 33.46 10.16 0.00 2.43
399 400 3.458653 GCTGGCCAGGCTTCAAAA 58.541 55.556 33.46 0.00 0.00 2.44
417 418 1.600957 CACCAATATCCAGAAGCGCTG 59.399 52.381 12.58 0.00 44.49 5.18
418 419 1.486310 TCACCAATATCCAGAAGCGCT 59.514 47.619 2.64 2.64 0.00 5.92
419 420 1.953559 TCACCAATATCCAGAAGCGC 58.046 50.000 0.00 0.00 0.00 5.92
420 421 2.225019 GCATCACCAATATCCAGAAGCG 59.775 50.000 0.00 0.00 0.00 4.68
421 422 2.225019 CGCATCACCAATATCCAGAAGC 59.775 50.000 0.00 0.00 0.00 3.86
422 423 2.225019 GCGCATCACCAATATCCAGAAG 59.775 50.000 0.30 0.00 0.00 2.85
423 424 2.158769 AGCGCATCACCAATATCCAGAA 60.159 45.455 11.47 0.00 0.00 3.02
424 425 1.417517 AGCGCATCACCAATATCCAGA 59.582 47.619 11.47 0.00 0.00 3.86
425 426 1.534163 CAGCGCATCACCAATATCCAG 59.466 52.381 11.47 0.00 0.00 3.86
426 427 1.596603 CAGCGCATCACCAATATCCA 58.403 50.000 11.47 0.00 0.00 3.41
427 428 0.877071 CCAGCGCATCACCAATATCC 59.123 55.000 11.47 0.00 0.00 2.59
428 429 1.532868 GACCAGCGCATCACCAATATC 59.467 52.381 11.47 0.00 0.00 1.63
429 430 1.597742 GACCAGCGCATCACCAATAT 58.402 50.000 11.47 0.00 0.00 1.28
430 431 0.809636 CGACCAGCGCATCACCAATA 60.810 55.000 11.47 0.00 0.00 1.90
431 432 2.108514 CGACCAGCGCATCACCAAT 61.109 57.895 11.47 0.00 0.00 3.16
432 433 2.741985 CGACCAGCGCATCACCAA 60.742 61.111 11.47 0.00 0.00 3.67
433 434 3.690280 TCGACCAGCGCATCACCA 61.690 61.111 11.47 0.00 40.61 4.17
434 435 3.188786 GTCGACCAGCGCATCACC 61.189 66.667 11.47 0.00 40.61 4.02
435 436 2.432456 TGTCGACCAGCGCATCAC 60.432 61.111 14.12 6.14 40.61 3.06
436 437 2.125952 CTGTCGACCAGCGCATCA 60.126 61.111 14.12 0.00 40.61 3.07
437 438 2.887568 CCTGTCGACCAGCGCATC 60.888 66.667 14.12 2.79 40.06 3.91
438 439 4.457496 CCCTGTCGACCAGCGCAT 62.457 66.667 14.12 0.00 40.06 4.73
441 442 2.423898 ATACCCCTGTCGACCAGCG 61.424 63.158 14.12 3.13 40.06 5.18
442 443 1.144057 CATACCCCTGTCGACCAGC 59.856 63.158 14.12 0.00 40.06 4.85
443 444 0.747255 CTCATACCCCTGTCGACCAG 59.253 60.000 14.12 10.30 41.15 4.00
444 445 0.686441 CCTCATACCCCTGTCGACCA 60.686 60.000 14.12 0.01 0.00 4.02
445 446 1.400530 CCCTCATACCCCTGTCGACC 61.401 65.000 14.12 0.00 0.00 4.79
446 447 0.686769 ACCCTCATACCCCTGTCGAC 60.687 60.000 9.11 9.11 0.00 4.20
447 448 0.396695 GACCCTCATACCCCTGTCGA 60.397 60.000 0.00 0.00 0.00 4.20
448 449 1.400530 GGACCCTCATACCCCTGTCG 61.401 65.000 0.00 0.00 0.00 4.35
449 450 1.400530 CGGACCCTCATACCCCTGTC 61.401 65.000 0.00 0.00 0.00 3.51
450 451 1.382695 CGGACCCTCATACCCCTGT 60.383 63.158 0.00 0.00 0.00 4.00
451 452 2.808206 GCGGACCCTCATACCCCTG 61.808 68.421 0.00 0.00 0.00 4.45
452 453 2.446036 GCGGACCCTCATACCCCT 60.446 66.667 0.00 0.00 0.00 4.79
453 454 1.705997 ATTGCGGACCCTCATACCCC 61.706 60.000 0.00 0.00 0.00 4.95
454 455 0.535102 CATTGCGGACCCTCATACCC 60.535 60.000 0.00 0.00 0.00 3.69
455 456 0.535102 CCATTGCGGACCCTCATACC 60.535 60.000 0.00 0.00 36.56 2.73
456 457 0.468226 TCCATTGCGGACCCTCATAC 59.532 55.000 0.00 0.00 39.64 2.39
457 458 0.758734 CTCCATTGCGGACCCTCATA 59.241 55.000 0.00 0.00 39.64 2.15
458 459 0.982852 TCTCCATTGCGGACCCTCAT 60.983 55.000 0.00 0.00 39.64 2.90
459 460 0.982852 ATCTCCATTGCGGACCCTCA 60.983 55.000 0.00 0.00 39.64 3.86
460 461 0.533755 CATCTCCATTGCGGACCCTC 60.534 60.000 0.00 0.00 39.64 4.30
461 462 1.528824 CATCTCCATTGCGGACCCT 59.471 57.895 0.00 0.00 39.64 4.34
462 463 2.189499 GCATCTCCATTGCGGACCC 61.189 63.158 0.00 0.00 39.64 4.46
463 464 1.031571 TTGCATCTCCATTGCGGACC 61.032 55.000 0.00 0.00 43.10 4.46
464 465 1.002033 GATTGCATCTCCATTGCGGAC 60.002 52.381 0.00 0.00 43.10 4.79
470 471 6.738832 CGATCTTATGATTGCATCTCCATT 57.261 37.500 0.00 0.00 35.94 3.16
511 514 0.248539 AGTAGATTCGAACGCGCCTC 60.249 55.000 5.73 1.55 37.46 4.70
520 523 1.315690 CGTGGCCCTAGTAGATTCGA 58.684 55.000 0.00 0.00 0.00 3.71
543 546 0.032678 CGAGGGGATTCATGTCGGAG 59.967 60.000 0.00 0.00 0.00 4.63
544 547 0.686441 ACGAGGGGATTCATGTCGGA 60.686 55.000 4.89 0.00 34.94 4.55
588 591 3.803082 CACATGGGGCGCACGAAG 61.803 66.667 10.83 1.26 0.00 3.79
620 623 4.024809 CGTTTTCCTTTCTCTTGGAGTGAC 60.025 45.833 0.00 0.00 33.46 3.67
958 2478 2.415625 GCTCTATATACTGGCGTTCCGG 60.416 54.545 0.00 0.00 44.58 5.14
961 2481 2.864968 CGGCTCTATATACTGGCGTTC 58.135 52.381 14.18 0.00 42.20 3.95
992 2512 1.165907 CCTTGTCGTGGCAGCAAAGA 61.166 55.000 0.00 0.00 0.00 2.52
1010 2530 3.213402 CGAGCCTCCGTCTCCTCC 61.213 72.222 0.00 0.00 0.00 4.30
1019 2539 2.185310 TTTCAGCCTTCCGAGCCTCC 62.185 60.000 0.00 0.00 0.00 4.30
1024 2544 0.603707 TGCAGTTTCAGCCTTCCGAG 60.604 55.000 0.00 0.00 0.00 4.63
1028 2548 1.803555 GAGACTGCAGTTTCAGCCTTC 59.196 52.381 27.55 10.00 37.59 3.46
1033 2553 0.601046 TGCCGAGACTGCAGTTTCAG 60.601 55.000 30.22 22.89 39.86 3.02
1054 2574 0.032815 CTAGCTAAAGAGAGGCGGCC 59.967 60.000 12.11 12.11 0.00 6.13
1056 2576 0.318275 CGCTAGCTAAAGAGAGGCGG 60.318 60.000 13.93 0.00 34.86 6.13
1058 2578 3.276882 CTACGCTAGCTAAAGAGAGGC 57.723 52.381 13.93 0.00 0.00 4.70
1110 2640 2.275318 CTAGCTAGCCAAGAAGTGCAC 58.725 52.381 12.13 9.40 0.00 4.57
1133 2663 4.241555 GATCCGCCATGGCCGAGT 62.242 66.667 30.79 17.98 37.80 4.18
1134 2664 4.240103 TGATCCGCCATGGCCGAG 62.240 66.667 30.79 19.34 37.80 4.63
1491 3021 1.079819 CTGGAACTGCGACACGGAT 60.080 57.895 0.00 0.00 0.00 4.18
1494 3024 2.029073 ACCTGGAACTGCGACACG 59.971 61.111 0.00 0.00 0.00 4.49
1960 3490 7.936847 AGAATTACACTACACCATGAAAGAACA 59.063 33.333 0.00 0.00 0.00 3.18
1961 3491 8.324163 AGAATTACACTACACCATGAAAGAAC 57.676 34.615 0.00 0.00 0.00 3.01
2039 3569 0.604578 GCTGCCAAAAGAATCCAGCA 59.395 50.000 6.10 0.00 46.00 4.41
2078 3608 2.347490 GTGGGAGTGCACCGATGT 59.653 61.111 14.63 0.00 0.00 3.06
2094 3624 3.395941 CTGGAAAAGATATGCTAGGGGGT 59.604 47.826 0.00 0.00 0.00 4.95
2154 3687 2.037772 ACTCCTCTGTAACAGCAAGGTG 59.962 50.000 0.00 0.00 0.00 4.00
2167 3700 7.192852 AGGGATGCATATTATTACTCCTCTG 57.807 40.000 0.00 0.00 0.00 3.35
2203 3737 3.810386 GCTCGGGATCAAAATAGGACTTC 59.190 47.826 0.00 0.00 0.00 3.01
2214 3748 1.339920 TGCATTTGAGCTCGGGATCAA 60.340 47.619 12.87 12.87 44.63 2.57
2317 4055 9.624697 GTGCTGAAATTTGTTCAACATAGATAA 57.375 29.630 0.00 0.00 28.86 1.75
2318 4056 8.791675 TGTGCTGAAATTTGTTCAACATAGATA 58.208 29.630 0.00 0.00 28.86 1.98
2319 4057 7.660112 TGTGCTGAAATTTGTTCAACATAGAT 58.340 30.769 0.00 0.00 28.86 1.98
2326 4064 7.606858 TCATTTTGTGCTGAAATTTGTTCAA 57.393 28.000 0.00 0.00 0.00 2.69
2344 4082 6.603201 ACCATGACTTCCACGAATATCATTTT 59.397 34.615 0.00 0.00 30.19 1.82
2396 4137 7.228507 GCCCCAAAAATTCTAGTTTGAAAACAT 59.771 33.333 8.53 0.00 41.30 2.71
2440 4182 7.594758 ACAAAATAACATTCGTGAAAGTCATGG 59.405 33.333 0.00 0.00 34.27 3.66
2443 4185 6.416455 GCACAAAATAACATTCGTGAAAGTCA 59.584 34.615 0.00 0.00 0.00 3.41
2547 4325 8.402798 TGCTCCTGATAAACTGTAAAATCAAA 57.597 30.769 0.00 0.00 0.00 2.69
2558 4336 6.240894 TGAACTCAAATGCTCCTGATAAACT 58.759 36.000 0.00 0.00 0.00 2.66
2610 4780 3.656751 GGAGTACTCTAGGGATGGGAGTA 59.343 52.174 21.88 0.00 40.29 2.59
2614 4784 3.235200 CAAGGAGTACTCTAGGGATGGG 58.765 54.545 21.88 0.00 0.00 4.00
2616 4786 3.068873 GCACAAGGAGTACTCTAGGGATG 59.931 52.174 21.88 13.48 0.00 3.51
2617 4787 3.052490 AGCACAAGGAGTACTCTAGGGAT 60.052 47.826 21.88 9.53 0.00 3.85
2619 4789 2.691011 GAGCACAAGGAGTACTCTAGGG 59.309 54.545 21.88 13.82 37.60 3.53
2621 4791 3.357203 TGGAGCACAAGGAGTACTCTAG 58.643 50.000 21.88 13.97 40.00 2.43
2623 4793 2.310779 TGGAGCACAAGGAGTACTCT 57.689 50.000 21.88 5.97 40.00 3.24
2625 4795 2.706190 AGTTTGGAGCACAAGGAGTACT 59.294 45.455 0.00 0.00 40.82 2.73
2627 4797 2.288825 CGAGTTTGGAGCACAAGGAGTA 60.289 50.000 0.00 0.00 40.82 2.59
2630 4800 0.250295 CCGAGTTTGGAGCACAAGGA 60.250 55.000 0.00 0.00 40.82 3.36
2631 4801 0.535102 ACCGAGTTTGGAGCACAAGG 60.535 55.000 0.00 0.00 40.82 3.61
2634 4804 0.320421 GCTACCGAGTTTGGAGCACA 60.320 55.000 0.00 0.00 34.40 4.57
2635 4805 0.320421 TGCTACCGAGTTTGGAGCAC 60.320 55.000 0.00 0.00 37.30 4.40
2637 4807 2.596904 TATGCTACCGAGTTTGGAGC 57.403 50.000 0.00 0.00 34.65 4.70
2639 4809 7.925043 TTAAAAATATGCTACCGAGTTTGGA 57.075 32.000 0.00 0.00 0.00 3.53
2686 4856 6.207221 TGATGTTGTGTCAATGTGCTAGATTT 59.793 34.615 0.00 0.00 0.00 2.17
2688 4858 5.247862 TGATGTTGTGTCAATGTGCTAGAT 58.752 37.500 0.00 0.00 0.00 1.98
2689 4859 4.640364 TGATGTTGTGTCAATGTGCTAGA 58.360 39.130 0.00 0.00 0.00 2.43
2690 4860 5.361135 TTGATGTTGTGTCAATGTGCTAG 57.639 39.130 0.00 0.00 31.07 3.42
2691 4861 5.963176 ATTGATGTTGTGTCAATGTGCTA 57.037 34.783 0.95 0.00 42.87 3.49
2692 4862 4.859304 ATTGATGTTGTGTCAATGTGCT 57.141 36.364 0.95 0.00 42.87 4.40
2727 4897 9.545105 TGTATCTCAAGCAATGTTTTGAATTTT 57.455 25.926 4.47 0.00 34.60 1.82
2728 4898 9.545105 TTGTATCTCAAGCAATGTTTTGAATTT 57.455 25.926 4.47 0.00 34.60 1.82
2729 4899 9.545105 TTTGTATCTCAAGCAATGTTTTGAATT 57.455 25.926 4.47 0.00 37.35 2.17
2730 4900 9.545105 TTTTGTATCTCAAGCAATGTTTTGAAT 57.455 25.926 4.47 4.43 37.35 2.57
2731 4901 8.939201 TTTTGTATCTCAAGCAATGTTTTGAA 57.061 26.923 4.47 0.00 37.35 2.69
2732 4902 8.939201 TTTTTGTATCTCAAGCAATGTTTTGA 57.061 26.923 0.00 3.21 37.35 2.69
2733 4903 9.588774 CATTTTTGTATCTCAAGCAATGTTTTG 57.411 29.630 0.00 0.00 35.76 2.44
2734 4904 9.545105 TCATTTTTGTATCTCAAGCAATGTTTT 57.455 25.926 0.00 0.00 38.40 2.43
2735 4905 8.981647 GTCATTTTTGTATCTCAAGCAATGTTT 58.018 29.630 0.00 0.00 38.40 2.83
2736 4906 8.143193 TGTCATTTTTGTATCTCAAGCAATGTT 58.857 29.630 0.00 0.00 38.40 2.71
2737 4907 7.660112 TGTCATTTTTGTATCTCAAGCAATGT 58.340 30.769 0.00 0.00 38.40 2.71
2738 4908 8.523523 TTGTCATTTTTGTATCTCAAGCAATG 57.476 30.769 0.00 0.00 38.49 2.82
2739 4909 9.545105 TTTTGTCATTTTTGTATCTCAAGCAAT 57.455 25.926 0.00 0.00 37.35 3.56
2740 4910 8.939201 TTTTGTCATTTTTGTATCTCAAGCAA 57.061 26.923 0.00 0.00 37.35 3.91
2741 4911 9.195411 GATTTTGTCATTTTTGTATCTCAAGCA 57.805 29.630 0.00 0.00 37.35 3.91
2742 4912 8.368126 CGATTTTGTCATTTTTGTATCTCAAGC 58.632 33.333 0.00 0.00 37.35 4.01
2743 4913 9.611284 TCGATTTTGTCATTTTTGTATCTCAAG 57.389 29.630 0.00 0.00 37.35 3.02
2761 4931 9.563898 CCCATTATCACATTGATATCGATTTTG 57.436 33.333 1.71 4.22 38.94 2.44
2762 4932 8.246180 GCCCATTATCACATTGATATCGATTTT 58.754 33.333 1.71 0.00 38.94 1.82
2763 4933 7.148018 GGCCCATTATCACATTGATATCGATTT 60.148 37.037 1.71 0.00 38.94 2.17
2764 4934 6.319658 GGCCCATTATCACATTGATATCGATT 59.680 38.462 1.71 0.00 38.94 3.34
2765 4935 5.824624 GGCCCATTATCACATTGATATCGAT 59.175 40.000 2.16 2.16 38.94 3.59
2766 4936 5.185454 GGCCCATTATCACATTGATATCGA 58.815 41.667 0.00 0.00 38.94 3.59
2767 4937 4.943093 TGGCCCATTATCACATTGATATCG 59.057 41.667 0.00 0.00 38.94 2.92
2768 4938 6.839124 TTGGCCCATTATCACATTGATATC 57.161 37.500 0.00 0.00 38.94 1.63
2769 4939 7.676893 AGATTTGGCCCATTATCACATTGATAT 59.323 33.333 0.00 0.00 38.94 1.63
2770 4940 7.011994 AGATTTGGCCCATTATCACATTGATA 58.988 34.615 0.00 0.00 38.26 2.15
2771 4941 5.842328 AGATTTGGCCCATTATCACATTGAT 59.158 36.000 0.00 0.00 40.72 2.57
2772 4942 5.210430 AGATTTGGCCCATTATCACATTGA 58.790 37.500 0.00 0.00 0.00 2.57
2773 4943 5.540400 AGATTTGGCCCATTATCACATTG 57.460 39.130 0.00 0.00 0.00 2.82
2774 4944 7.673641 TTTAGATTTGGCCCATTATCACATT 57.326 32.000 0.00 0.00 0.00 2.71
2775 4945 6.239402 GCTTTAGATTTGGCCCATTATCACAT 60.239 38.462 0.00 0.00 0.00 3.21
2776 4946 5.068987 GCTTTAGATTTGGCCCATTATCACA 59.931 40.000 0.00 0.00 0.00 3.58
2777 4947 5.509670 GGCTTTAGATTTGGCCCATTATCAC 60.510 44.000 0.00 0.00 38.77 3.06
2778 4948 4.588528 GGCTTTAGATTTGGCCCATTATCA 59.411 41.667 0.00 0.00 38.77 2.15
2779 4949 5.139435 GGCTTTAGATTTGGCCCATTATC 57.861 43.478 0.00 0.00 38.77 1.75
2786 4956 2.179427 AGTTGGGCTTTAGATTTGGCC 58.821 47.619 0.00 0.00 45.24 5.36
2787 4957 3.961480 AAGTTGGGCTTTAGATTTGGC 57.039 42.857 0.00 0.00 32.57 4.52
2788 4958 6.530019 ACATAAGTTGGGCTTTAGATTTGG 57.470 37.500 0.00 0.00 38.57 3.28
2804 4974 9.350357 CGACAGTAAATAGTACACAACATAAGT 57.650 33.333 0.00 0.00 0.00 2.24
2805 4975 9.563898 TCGACAGTAAATAGTACACAACATAAG 57.436 33.333 0.00 0.00 0.00 1.73
2806 4976 9.911138 TTCGACAGTAAATAGTACACAACATAA 57.089 29.630 0.00 0.00 0.00 1.90
2808 4978 8.997621 ATTCGACAGTAAATAGTACACAACAT 57.002 30.769 0.00 0.00 0.00 2.71
2809 4979 8.821147 AATTCGACAGTAAATAGTACACAACA 57.179 30.769 0.00 0.00 0.00 3.33
2810 4980 9.525007 CAAATTCGACAGTAAATAGTACACAAC 57.475 33.333 0.00 0.00 0.00 3.32
2811 4981 9.263538 ACAAATTCGACAGTAAATAGTACACAA 57.736 29.630 0.00 0.00 0.00 3.33
2812 4982 8.821147 ACAAATTCGACAGTAAATAGTACACA 57.179 30.769 0.00 0.00 0.00 3.72
2813 4983 8.918658 TGACAAATTCGACAGTAAATAGTACAC 58.081 33.333 0.00 0.00 0.00 2.90
2814 4984 9.647797 ATGACAAATTCGACAGTAAATAGTACA 57.352 29.630 0.00 0.00 0.00 2.90
2823 4993 9.820229 GAAACATAAATGACAAATTCGACAGTA 57.180 29.630 0.00 0.00 0.00 2.74
2824 4994 8.567948 AGAAACATAAATGACAAATTCGACAGT 58.432 29.630 0.00 0.00 0.00 3.55
2825 4995 8.955061 AGAAACATAAATGACAAATTCGACAG 57.045 30.769 0.00 0.00 0.00 3.51
2826 4996 8.563732 TGAGAAACATAAATGACAAATTCGACA 58.436 29.630 0.00 0.00 0.00 4.35
2827 4997 8.948853 TGAGAAACATAAATGACAAATTCGAC 57.051 30.769 0.00 0.00 0.00 4.20
2828 4998 9.611284 CTTGAGAAACATAAATGACAAATTCGA 57.389 29.630 0.00 0.00 0.00 3.71
2829 4999 8.368126 GCTTGAGAAACATAAATGACAAATTCG 58.632 33.333 0.00 0.00 0.00 3.34
2830 5000 9.415544 AGCTTGAGAAACATAAATGACAAATTC 57.584 29.630 0.00 0.00 0.00 2.17
2833 5003 9.844790 CATAGCTTGAGAAACATAAATGACAAA 57.155 29.630 0.00 0.00 0.00 2.83
2834 5004 9.013229 ACATAGCTTGAGAAACATAAATGACAA 57.987 29.630 0.00 0.00 0.00 3.18
2835 5005 8.565896 ACATAGCTTGAGAAACATAAATGACA 57.434 30.769 0.00 0.00 0.00 3.58
2836 5006 9.846248 AAACATAGCTTGAGAAACATAAATGAC 57.154 29.630 0.00 0.00 0.00 3.06
2838 5008 9.003112 CGAAACATAGCTTGAGAAACATAAATG 57.997 33.333 0.00 0.00 0.00 2.32
2839 5009 8.946085 TCGAAACATAGCTTGAGAAACATAAAT 58.054 29.630 0.00 0.00 0.00 1.40
2840 5010 8.317891 TCGAAACATAGCTTGAGAAACATAAA 57.682 30.769 0.00 0.00 0.00 1.40
2841 5011 7.899178 TCGAAACATAGCTTGAGAAACATAA 57.101 32.000 0.00 0.00 0.00 1.90
2842 5012 7.899178 TTCGAAACATAGCTTGAGAAACATA 57.101 32.000 0.00 0.00 0.00 2.29
2843 5013 6.801539 TTCGAAACATAGCTTGAGAAACAT 57.198 33.333 0.00 0.00 0.00 2.71
2844 5014 6.801539 ATTCGAAACATAGCTTGAGAAACA 57.198 33.333 0.00 0.00 0.00 2.83
2845 5015 8.420189 CAAAATTCGAAACATAGCTTGAGAAAC 58.580 33.333 0.00 0.00 0.00 2.78
2846 5016 8.349245 TCAAAATTCGAAACATAGCTTGAGAAA 58.651 29.630 0.00 0.00 0.00 2.52
2847 5017 7.870826 TCAAAATTCGAAACATAGCTTGAGAA 58.129 30.769 0.00 0.00 0.00 2.87
2848 5018 7.433708 TCAAAATTCGAAACATAGCTTGAGA 57.566 32.000 0.00 0.00 0.00 3.27
2849 5019 8.679288 AATCAAAATTCGAAACATAGCTTGAG 57.321 30.769 0.00 0.00 0.00 3.02
2850 5020 9.128107 GAAATCAAAATTCGAAACATAGCTTGA 57.872 29.630 0.00 4.42 0.00 3.02
2851 5021 8.914654 TGAAATCAAAATTCGAAACATAGCTTG 58.085 29.630 0.00 0.00 0.00 4.01
2852 5022 9.474920 TTGAAATCAAAATTCGAAACATAGCTT 57.525 25.926 0.00 0.00 32.11 3.74
2853 5023 9.474920 TTTGAAATCAAAATTCGAAACATAGCT 57.525 25.926 0.00 0.00 42.26 3.32
2869 5039 9.462174 GTATCTTGTCACAACATTTGAAATCAA 57.538 29.630 0.00 0.00 34.73 2.57
2870 5040 8.628280 TGTATCTTGTCACAACATTTGAAATCA 58.372 29.630 0.00 0.00 34.73 2.57
2871 5041 9.462174 TTGTATCTTGTCACAACATTTGAAATC 57.538 29.630 0.00 0.00 34.73 2.17
2882 5052 3.799366 ACACCGTTGTATCTTGTCACAA 58.201 40.909 0.00 0.00 32.60 3.33
2883 5053 3.462483 ACACCGTTGTATCTTGTCACA 57.538 42.857 0.00 0.00 32.60 3.58
2884 5054 3.558418 ACAACACCGTTGTATCTTGTCAC 59.442 43.478 10.63 0.00 33.55 3.67
2885 5055 3.558006 CACAACACCGTTGTATCTTGTCA 59.442 43.478 11.84 0.00 33.55 3.58
2886 5056 3.558418 ACACAACACCGTTGTATCTTGTC 59.442 43.478 11.84 0.00 33.55 3.18
2887 5057 3.537580 ACACAACACCGTTGTATCTTGT 58.462 40.909 11.84 3.67 33.55 3.16
2888 5058 3.807622 AGACACAACACCGTTGTATCTTG 59.192 43.478 13.54 4.42 32.81 3.02
2889 5059 4.067972 AGACACAACACCGTTGTATCTT 57.932 40.909 13.54 1.12 32.81 2.40
2890 5060 3.746045 AGACACAACACCGTTGTATCT 57.254 42.857 13.54 13.54 33.55 1.98
2891 5061 4.927425 ACATAGACACAACACCGTTGTATC 59.073 41.667 11.84 10.70 33.55 2.24
2892 5062 4.688879 CACATAGACACAACACCGTTGTAT 59.311 41.667 11.84 1.07 33.55 2.29
2893 5063 4.052608 CACATAGACACAACACCGTTGTA 58.947 43.478 11.84 0.00 33.55 2.41
2894 5064 2.869801 CACATAGACACAACACCGTTGT 59.130 45.455 6.68 6.68 37.67 3.32
2895 5065 2.349438 GCACATAGACACAACACCGTTG 60.349 50.000 5.34 5.34 0.00 4.10
2896 5066 1.871039 GCACATAGACACAACACCGTT 59.129 47.619 0.00 0.00 0.00 4.44
2897 5067 1.070134 AGCACATAGACACAACACCGT 59.930 47.619 0.00 0.00 0.00 4.83
2898 5068 1.460743 CAGCACATAGACACAACACCG 59.539 52.381 0.00 0.00 0.00 4.94
2899 5069 1.806542 CCAGCACATAGACACAACACC 59.193 52.381 0.00 0.00 0.00 4.16
2900 5070 2.766313 TCCAGCACATAGACACAACAC 58.234 47.619 0.00 0.00 0.00 3.32
2901 5071 3.701205 ATCCAGCACATAGACACAACA 57.299 42.857 0.00 0.00 0.00 3.33
2902 5072 5.376854 AAAATCCAGCACATAGACACAAC 57.623 39.130 0.00 0.00 0.00 3.32
2949 5119 6.849148 TGCTCCAAACTTGGTAGCACTTTTT 61.849 40.000 21.55 0.00 46.54 1.94
2950 5120 5.413191 TGCTCCAAACTTGGTAGCACTTTT 61.413 41.667 21.55 0.00 46.54 2.27
2951 5121 3.939454 TGCTCCAAACTTGGTAGCACTTT 60.939 43.478 21.55 0.00 46.54 2.66
2952 5122 2.422803 TGCTCCAAACTTGGTAGCACTT 60.423 45.455 21.55 0.00 46.54 3.16
2953 5123 1.142870 TGCTCCAAACTTGGTAGCACT 59.857 47.619 21.55 0.00 46.54 4.40
2954 5124 1.604604 TGCTCCAAACTTGGTAGCAC 58.395 50.000 21.55 6.71 46.54 4.40
2961 5131 1.228124 TCCCGGTGCTCCAAACTTG 60.228 57.895 0.00 0.00 0.00 3.16
2962 5132 1.073199 CTCCCGGTGCTCCAAACTT 59.927 57.895 0.00 0.00 0.00 2.66
2963 5133 2.750350 CTCCCGGTGCTCCAAACT 59.250 61.111 0.00 0.00 0.00 2.66
2964 5134 3.056328 GCTCCCGGTGCTCCAAAC 61.056 66.667 0.00 0.00 0.00 2.93
2965 5135 3.565214 TGCTCCCGGTGCTCCAAA 61.565 61.111 16.01 0.00 0.00 3.28
2966 5136 4.329545 GTGCTCCCGGTGCTCCAA 62.330 66.667 16.01 0.00 0.00 3.53
2984 5154 0.467659 CTCGTACTCCCACCCCTAGG 60.468 65.000 0.06 0.06 40.04 3.02
2985 5155 0.549950 TCTCGTACTCCCACCCCTAG 59.450 60.000 0.00 0.00 0.00 3.02
2986 5156 1.229131 ATCTCGTACTCCCACCCCTA 58.771 55.000 0.00 0.00 0.00 3.53
2987 5157 1.229131 TATCTCGTACTCCCACCCCT 58.771 55.000 0.00 0.00 0.00 4.79
2988 5158 2.305858 ATATCTCGTACTCCCACCCC 57.694 55.000 0.00 0.00 0.00 4.95
2989 5159 3.498334 AGAATATCTCGTACTCCCACCC 58.502 50.000 0.00 0.00 0.00 4.61
2990 5160 3.506844 GGAGAATATCTCGTACTCCCACC 59.493 52.174 0.00 0.00 44.28 4.61
2991 5161 4.769859 GGAGAATATCTCGTACTCCCAC 57.230 50.000 0.00 0.00 44.28 4.61
2994 5164 4.036941 AGGGGAGAATATCTCGTACTCC 57.963 50.000 0.00 0.00 44.28 3.85
2995 5165 5.807909 ACTAGGGGAGAATATCTCGTACTC 58.192 45.833 0.00 0.00 44.28 2.59
2996 5166 5.846528 ACTAGGGGAGAATATCTCGTACT 57.153 43.478 0.00 2.81 44.28 2.73
2997 5167 6.710278 AGTACTAGGGGAGAATATCTCGTAC 58.290 44.000 0.00 11.37 44.28 3.67
2998 5168 6.949117 AGTACTAGGGGAGAATATCTCGTA 57.051 41.667 0.00 0.00 44.28 3.43
2999 5169 5.846528 AGTACTAGGGGAGAATATCTCGT 57.153 43.478 0.00 0.00 44.28 4.18
3000 5170 6.239396 TCAAGTACTAGGGGAGAATATCTCG 58.761 44.000 0.00 0.00 44.28 4.04
3001 5171 7.039574 GGTTCAAGTACTAGGGGAGAATATCTC 60.040 44.444 0.00 0.00 42.66 2.75
3002 5172 6.783482 GGTTCAAGTACTAGGGGAGAATATCT 59.217 42.308 0.00 0.00 0.00 1.98
3003 5173 6.014413 GGGTTCAAGTACTAGGGGAGAATATC 60.014 46.154 0.00 0.00 0.00 1.63
3004 5174 5.845065 GGGTTCAAGTACTAGGGGAGAATAT 59.155 44.000 0.00 0.00 0.00 1.28
3005 5175 5.042827 AGGGTTCAAGTACTAGGGGAGAATA 60.043 44.000 0.00 0.00 0.00 1.75
3006 5176 4.038633 GGGTTCAAGTACTAGGGGAGAAT 58.961 47.826 0.00 0.00 0.00 2.40
3007 5177 3.078612 AGGGTTCAAGTACTAGGGGAGAA 59.921 47.826 0.00 0.00 0.00 2.87
3008 5178 2.658489 AGGGTTCAAGTACTAGGGGAGA 59.342 50.000 0.00 0.00 0.00 3.71
3009 5179 2.766828 CAGGGTTCAAGTACTAGGGGAG 59.233 54.545 0.00 0.00 0.00 4.30
3010 5180 2.113052 ACAGGGTTCAAGTACTAGGGGA 59.887 50.000 0.00 0.00 0.00 4.81
3011 5181 2.236395 CACAGGGTTCAAGTACTAGGGG 59.764 54.545 0.00 0.00 0.00 4.79
3012 5182 2.236395 CCACAGGGTTCAAGTACTAGGG 59.764 54.545 0.00 0.00 0.00 3.53
3013 5183 2.236395 CCCACAGGGTTCAAGTACTAGG 59.764 54.545 0.00 0.00 38.25 3.02
3048 5226 6.540189 ACATGGCTCAGATAGTTATGTTTCAC 59.460 38.462 0.00 0.00 33.11 3.18
3065 5243 7.367285 TGACAAAACATAACTAAACATGGCTC 58.633 34.615 0.00 0.00 0.00 4.70
3100 5278 5.175126 CGGTGTGCGATTTAAATAGGTCTAG 59.825 44.000 9.90 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.