Multiple sequence alignment - TraesCS1B01G183300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G183300 chr1B 100.000 2570 0 0 1 2570 330228972 330231541 0.000000e+00 4747.0
1 TraesCS1B01G183300 chr1B 74.877 203 31 16 369 553 225065034 225065234 9.860000e-10 75.0
2 TraesCS1B01G183300 chr1D 94.336 1024 35 7 630 1647 247509585 247508579 0.000000e+00 1548.0
3 TraesCS1B01G183300 chr1D 94.530 914 35 8 1666 2570 247508591 247507684 0.000000e+00 1397.0
4 TraesCS1B01G183300 chr1D 84.103 195 13 10 411 589 247509777 247509585 3.400000e-39 172.0
5 TraesCS1B01G183300 chr1D 80.000 220 33 10 454 667 251348871 251348657 4.430000e-33 152.0
6 TraesCS1B01G183300 chr1A 91.630 920 45 12 1666 2570 299718260 299719162 0.000000e+00 1243.0
7 TraesCS1B01G183300 chr1A 95.290 637 30 0 1011 1647 299717636 299718272 0.000000e+00 1011.0
8 TraesCS1B01G183300 chr1A 87.097 558 44 15 426 965 299717092 299717639 7.860000e-170 606.0
9 TraesCS1B01G183300 chr1A 75.251 299 50 18 386 665 341995108 341994815 1.250000e-23 121.0
10 TraesCS1B01G183300 chr6A 86.667 570 74 2 1001 1569 9054306 9054874 4.670000e-177 630.0
11 TraesCS1B01G183300 chr6A 86.643 569 74 2 1001 1568 9104468 9105035 1.680000e-176 628.0
12 TraesCS1B01G183300 chr6A 86.643 569 74 2 1001 1568 9107472 9108039 1.680000e-176 628.0
13 TraesCS1B01G183300 chr6A 86.643 569 74 2 1001 1568 9122490 9123057 1.680000e-176 628.0
14 TraesCS1B01G183300 chr6A 86.467 569 75 2 1001 1568 9113481 9114048 7.810000e-175 623.0
15 TraesCS1B01G183300 chr6A 78.704 216 38 7 454 665 457678847 457678636 1.240000e-28 137.0
16 TraesCS1B01G183300 chrUn 86.467 569 75 2 1001 1568 357590841 357590274 7.810000e-175 623.0
17 TraesCS1B01G183300 chrUn 94.638 373 15 2 1 373 77075433 77075066 7.980000e-160 573.0
18 TraesCS1B01G183300 chrUn 93.963 381 18 2 1 380 82577159 82576783 2.870000e-159 571.0
19 TraesCS1B01G183300 chrUn 76.037 217 39 12 456 665 337346133 337346343 1.630000e-17 100.0
20 TraesCS1B01G183300 chr6D 86.467 569 75 2 1001 1568 8743560 8742993 7.810000e-175 623.0
21 TraesCS1B01G183300 chr4A 95.013 381 15 2 1 381 153046996 153046620 1.700000e-166 595.0
22 TraesCS1B01G183300 chr4A 72.936 218 41 17 454 665 250025065 250024860 2.760000e-05 60.2
23 TraesCS1B01G183300 chr2B 94.503 382 16 2 1 381 599869048 599869425 3.680000e-163 584.0
24 TraesCS1B01G183300 chr5B 94.271 384 16 3 1 383 712870439 712870817 1.330000e-162 582.0
25 TraesCS1B01G183300 chr5B 94.865 370 15 1 1 370 55536770 55537135 2.220000e-160 575.0
26 TraesCS1B01G183300 chr5B 78.704 216 39 6 454 665 586083619 586083831 1.240000e-28 137.0
27 TraesCS1B01G183300 chr5A 94.459 379 16 2 1 379 37638594 37638221 1.710000e-161 579.0
28 TraesCS1B01G183300 chr5A 79.213 178 26 9 366 534 91497001 91497176 2.090000e-21 113.0
29 TraesCS1B01G183300 chr3B 94.638 373 15 2 1 373 255989500 255989133 7.980000e-160 573.0
30 TraesCS1B01G183300 chr7B 95.041 363 14 1 1 363 73718474 73718832 3.710000e-158 568.0
31 TraesCS1B01G183300 chr7A 77.103 214 36 12 459 665 726274993 726274786 7.520000e-21 111.0
32 TraesCS1B01G183300 chr7A 76.168 214 38 12 459 665 726345703 726345496 1.630000e-17 100.0
33 TraesCS1B01G183300 chr7A 76.168 214 38 12 459 665 726368325 726368118 1.630000e-17 100.0
34 TraesCS1B01G183300 chr3D 73.968 315 57 21 372 665 398120599 398120289 1.260000e-18 104.0
35 TraesCS1B01G183300 chr4B 73.267 202 37 13 473 665 256712153 256711960 9.930000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G183300 chr1B 330228972 330231541 2569 False 4747.000000 4747 100.000000 1 2570 1 chr1B.!!$F2 2569
1 TraesCS1B01G183300 chr1D 247507684 247509777 2093 True 1039.000000 1548 90.989667 411 2570 3 chr1D.!!$R2 2159
2 TraesCS1B01G183300 chr1A 299717092 299719162 2070 False 953.333333 1243 91.339000 426 2570 3 chr1A.!!$F1 2144
3 TraesCS1B01G183300 chr6A 9054306 9054874 568 False 630.000000 630 86.667000 1001 1569 1 chr6A.!!$F1 568
4 TraesCS1B01G183300 chr6A 9104468 9108039 3571 False 628.000000 628 86.643000 1001 1568 2 chr6A.!!$F4 567
5 TraesCS1B01G183300 chr6A 9122490 9123057 567 False 628.000000 628 86.643000 1001 1568 1 chr6A.!!$F3 567
6 TraesCS1B01G183300 chr6A 9113481 9114048 567 False 623.000000 623 86.467000 1001 1568 1 chr6A.!!$F2 567
7 TraesCS1B01G183300 chrUn 357590274 357590841 567 True 623.000000 623 86.467000 1001 1568 1 chrUn.!!$R3 567
8 TraesCS1B01G183300 chr6D 8742993 8743560 567 True 623.000000 623 86.467000 1001 1568 1 chr6D.!!$R1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
246 247 0.034616 GAAGGAGATCGGGAGGCATG 59.965 60.0 0.0 0.0 0.0 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1759 4599 0.105913 GGAAGTTTGGGGGTTGTCCA 60.106 55.0 0.0 0.0 37.22 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.482163 TCAACAATGAGTGTCATAGGTGA 57.518 39.130 0.00 0.00 40.60 4.02
23 24 5.482006 TCAACAATGAGTGTCATAGGTGAG 58.518 41.667 0.00 0.00 40.60 3.51
24 25 4.478206 ACAATGAGTGTCATAGGTGAGG 57.522 45.455 0.00 0.00 35.76 3.86
25 26 3.840666 ACAATGAGTGTCATAGGTGAGGT 59.159 43.478 0.00 0.00 35.76 3.85
26 27 4.186926 CAATGAGTGTCATAGGTGAGGTG 58.813 47.826 0.00 0.00 35.76 4.00
27 28 2.179427 TGAGTGTCATAGGTGAGGTGG 58.821 52.381 0.00 0.00 34.36 4.61
28 29 2.180276 GAGTGTCATAGGTGAGGTGGT 58.820 52.381 0.00 0.00 34.36 4.16
29 30 2.567615 GAGTGTCATAGGTGAGGTGGTT 59.432 50.000 0.00 0.00 34.36 3.67
30 31 3.767673 GAGTGTCATAGGTGAGGTGGTTA 59.232 47.826 0.00 0.00 34.36 2.85
31 32 3.769844 AGTGTCATAGGTGAGGTGGTTAG 59.230 47.826 0.00 0.00 34.36 2.34
32 33 2.500098 TGTCATAGGTGAGGTGGTTAGC 59.500 50.000 0.00 0.00 34.36 3.09
33 34 2.766828 GTCATAGGTGAGGTGGTTAGCT 59.233 50.000 0.00 0.00 34.36 3.32
40 41 2.115343 GAGGTGGTTAGCTCCCTTTG 57.885 55.000 0.00 0.00 43.87 2.77
41 42 1.351350 GAGGTGGTTAGCTCCCTTTGT 59.649 52.381 0.00 0.00 43.87 2.83
42 43 1.780919 AGGTGGTTAGCTCCCTTTGTT 59.219 47.619 0.00 0.00 0.00 2.83
43 44 1.886542 GGTGGTTAGCTCCCTTTGTTG 59.113 52.381 0.00 0.00 0.00 3.33
44 45 2.488347 GGTGGTTAGCTCCCTTTGTTGA 60.488 50.000 0.00 0.00 0.00 3.18
45 46 3.421844 GTGGTTAGCTCCCTTTGTTGAT 58.578 45.455 0.00 0.00 0.00 2.57
46 47 3.826729 GTGGTTAGCTCCCTTTGTTGATT 59.173 43.478 0.00 0.00 0.00 2.57
47 48 5.007682 GTGGTTAGCTCCCTTTGTTGATTA 58.992 41.667 0.00 0.00 0.00 1.75
48 49 5.007682 TGGTTAGCTCCCTTTGTTGATTAC 58.992 41.667 0.00 0.00 0.00 1.89
49 50 4.398358 GGTTAGCTCCCTTTGTTGATTACC 59.602 45.833 0.00 0.00 0.00 2.85
50 51 5.254115 GTTAGCTCCCTTTGTTGATTACCT 58.746 41.667 0.00 0.00 0.00 3.08
51 52 3.690460 AGCTCCCTTTGTTGATTACCTG 58.310 45.455 0.00 0.00 0.00 4.00
52 53 3.074538 AGCTCCCTTTGTTGATTACCTGT 59.925 43.478 0.00 0.00 0.00 4.00
53 54 4.288626 AGCTCCCTTTGTTGATTACCTGTA 59.711 41.667 0.00 0.00 0.00 2.74
54 55 4.636206 GCTCCCTTTGTTGATTACCTGTAG 59.364 45.833 0.00 0.00 0.00 2.74
55 56 5.570844 GCTCCCTTTGTTGATTACCTGTAGA 60.571 44.000 0.00 0.00 0.00 2.59
56 57 6.442541 TCCCTTTGTTGATTACCTGTAGAA 57.557 37.500 0.00 0.00 0.00 2.10
57 58 6.235664 TCCCTTTGTTGATTACCTGTAGAAC 58.764 40.000 0.00 0.00 0.00 3.01
58 59 6.001460 CCCTTTGTTGATTACCTGTAGAACA 58.999 40.000 0.00 0.00 0.00 3.18
59 60 6.149474 CCCTTTGTTGATTACCTGTAGAACAG 59.851 42.308 0.00 0.00 45.53 3.16
74 75 7.962995 TGTAGAACAGAGATCAAATCCTAGT 57.037 36.000 0.00 0.00 0.00 2.57
75 76 8.001881 TGTAGAACAGAGATCAAATCCTAGTC 57.998 38.462 0.00 0.00 0.00 2.59
76 77 6.478512 AGAACAGAGATCAAATCCTAGTCC 57.521 41.667 0.00 0.00 0.00 3.85
77 78 5.960811 AGAACAGAGATCAAATCCTAGTCCA 59.039 40.000 0.00 0.00 0.00 4.02
78 79 6.441924 AGAACAGAGATCAAATCCTAGTCCAA 59.558 38.462 0.00 0.00 0.00 3.53
79 80 6.232581 ACAGAGATCAAATCCTAGTCCAAG 57.767 41.667 0.00 0.00 0.00 3.61
80 81 5.055812 CAGAGATCAAATCCTAGTCCAAGC 58.944 45.833 0.00 0.00 0.00 4.01
81 82 4.718774 AGAGATCAAATCCTAGTCCAAGCA 59.281 41.667 0.00 0.00 0.00 3.91
82 83 5.369110 AGAGATCAAATCCTAGTCCAAGCAT 59.631 40.000 0.00 0.00 0.00 3.79
83 84 6.011122 AGATCAAATCCTAGTCCAAGCATT 57.989 37.500 0.00 0.00 0.00 3.56
84 85 7.071698 AGAGATCAAATCCTAGTCCAAGCATTA 59.928 37.037 0.00 0.00 0.00 1.90
85 86 7.753630 AGATCAAATCCTAGTCCAAGCATTAT 58.246 34.615 0.00 0.00 0.00 1.28
86 87 8.223330 AGATCAAATCCTAGTCCAAGCATTATT 58.777 33.333 0.00 0.00 0.00 1.40
87 88 8.773033 ATCAAATCCTAGTCCAAGCATTATTT 57.227 30.769 0.00 0.00 0.00 1.40
88 89 8.593945 TCAAATCCTAGTCCAAGCATTATTTT 57.406 30.769 0.00 0.00 0.00 1.82
89 90 9.034800 TCAAATCCTAGTCCAAGCATTATTTTT 57.965 29.630 0.00 0.00 0.00 1.94
90 91 9.090692 CAAATCCTAGTCCAAGCATTATTTTTG 57.909 33.333 0.00 0.00 0.00 2.44
91 92 6.207691 TCCTAGTCCAAGCATTATTTTTGC 57.792 37.500 0.00 0.00 40.45 3.68
102 103 5.798910 GCATTATTTTTGCTGAAAATCGGG 58.201 37.500 12.53 6.81 42.81 5.14
103 104 5.580297 GCATTATTTTTGCTGAAAATCGGGA 59.420 36.000 12.53 2.63 42.81 5.14
104 105 6.091986 GCATTATTTTTGCTGAAAATCGGGAA 59.908 34.615 12.53 5.11 42.81 3.97
105 106 7.674705 GCATTATTTTTGCTGAAAATCGGGAAG 60.675 37.037 12.53 3.66 42.81 3.46
106 107 3.658757 TTTTGCTGAAAATCGGGAAGG 57.341 42.857 0.00 0.00 34.57 3.46
107 108 2.577606 TTGCTGAAAATCGGGAAGGA 57.422 45.000 0.00 0.00 29.50 3.36
108 109 2.577606 TGCTGAAAATCGGGAAGGAA 57.422 45.000 0.00 0.00 0.00 3.36
109 110 2.436417 TGCTGAAAATCGGGAAGGAAG 58.564 47.619 0.00 0.00 0.00 3.46
110 111 1.745653 GCTGAAAATCGGGAAGGAAGG 59.254 52.381 0.00 0.00 0.00 3.46
111 112 1.745653 CTGAAAATCGGGAAGGAAGGC 59.254 52.381 0.00 0.00 0.00 4.35
112 113 0.733150 GAAAATCGGGAAGGAAGGCG 59.267 55.000 0.00 0.00 0.00 5.52
113 114 1.313091 AAAATCGGGAAGGAAGGCGC 61.313 55.000 0.00 0.00 0.00 6.53
114 115 4.530857 ATCGGGAAGGAAGGCGCG 62.531 66.667 0.00 0.00 41.11 6.86
127 128 2.026014 GCGCGTGGGCCATAATTG 59.974 61.111 10.70 0.00 35.02 2.32
128 129 2.477176 GCGCGTGGGCCATAATTGA 61.477 57.895 10.70 0.00 35.02 2.57
129 130 1.355210 CGCGTGGGCCATAATTGAC 59.645 57.895 10.70 0.00 35.02 3.18
130 131 1.355210 GCGTGGGCCATAATTGACG 59.645 57.895 10.70 7.93 0.00 4.35
131 132 1.092921 GCGTGGGCCATAATTGACGA 61.093 55.000 10.70 0.00 0.00 4.20
132 133 1.593196 CGTGGGCCATAATTGACGAT 58.407 50.000 10.70 0.00 0.00 3.73
133 134 1.946768 CGTGGGCCATAATTGACGATT 59.053 47.619 10.70 0.00 0.00 3.34
134 135 3.135225 CGTGGGCCATAATTGACGATTA 58.865 45.455 10.70 0.00 34.82 1.75
135 136 3.059188 CGTGGGCCATAATTGACGATTAC 60.059 47.826 10.70 0.00 33.20 1.89
136 137 3.880490 GTGGGCCATAATTGACGATTACA 59.120 43.478 10.70 0.00 33.20 2.41
137 138 4.336993 GTGGGCCATAATTGACGATTACAA 59.663 41.667 10.70 0.00 33.20 2.41
138 139 4.950475 TGGGCCATAATTGACGATTACAAA 59.050 37.500 0.00 0.00 33.20 2.83
139 140 5.419155 TGGGCCATAATTGACGATTACAAAA 59.581 36.000 0.00 0.00 33.20 2.44
140 141 6.071334 TGGGCCATAATTGACGATTACAAAAA 60.071 34.615 0.00 0.00 33.20 1.94
141 142 6.983890 GGGCCATAATTGACGATTACAAAAAT 59.016 34.615 4.39 0.00 33.20 1.82
142 143 7.494298 GGGCCATAATTGACGATTACAAAAATT 59.506 33.333 4.39 0.00 33.20 1.82
143 144 9.522804 GGCCATAATTGACGATTACAAAAATTA 57.477 29.630 0.00 0.00 33.20 1.40
149 150 9.855021 AATTGACGATTACAAAAATTAGGAAGG 57.145 29.630 0.00 0.00 0.00 3.46
150 151 6.848451 TGACGATTACAAAAATTAGGAAGGC 58.152 36.000 0.00 0.00 0.00 4.35
151 152 6.431543 TGACGATTACAAAAATTAGGAAGGCA 59.568 34.615 0.00 0.00 0.00 4.75
152 153 6.617879 ACGATTACAAAAATTAGGAAGGCAC 58.382 36.000 0.00 0.00 0.00 5.01
153 154 5.737290 CGATTACAAAAATTAGGAAGGCACG 59.263 40.000 0.00 0.00 0.00 5.34
154 155 6.402766 CGATTACAAAAATTAGGAAGGCACGA 60.403 38.462 0.00 0.00 0.00 4.35
155 156 4.766404 ACAAAAATTAGGAAGGCACGAG 57.234 40.909 0.00 0.00 0.00 4.18
156 157 3.057526 ACAAAAATTAGGAAGGCACGAGC 60.058 43.478 0.00 0.00 41.10 5.03
157 158 2.489938 AAATTAGGAAGGCACGAGCA 57.510 45.000 7.26 0.00 44.61 4.26
158 159 2.029838 AATTAGGAAGGCACGAGCAG 57.970 50.000 7.26 0.00 44.61 4.24
159 160 0.179000 ATTAGGAAGGCACGAGCAGG 59.821 55.000 7.26 0.00 44.61 4.85
160 161 1.192146 TTAGGAAGGCACGAGCAGGT 61.192 55.000 7.26 0.00 44.61 4.00
161 162 1.888436 TAGGAAGGCACGAGCAGGTG 61.888 60.000 7.26 3.04 44.61 4.00
162 163 2.031163 GAAGGCACGAGCAGGTGT 59.969 61.111 7.26 0.00 44.61 4.16
163 164 2.281070 AAGGCACGAGCAGGTGTG 60.281 61.111 7.26 1.83 44.61 3.82
172 173 4.312052 GCAGGTGTGCCCGATAAA 57.688 55.556 0.00 0.00 44.72 1.40
173 174 2.562125 GCAGGTGTGCCCGATAAAA 58.438 52.632 0.00 0.00 44.72 1.52
174 175 1.102978 GCAGGTGTGCCCGATAAAAT 58.897 50.000 0.00 0.00 44.72 1.82
175 176 1.065551 GCAGGTGTGCCCGATAAAATC 59.934 52.381 0.00 0.00 44.72 2.17
176 177 4.442609 GCAGGTGTGCCCGATAAAATCG 62.443 54.545 2.36 2.36 45.49 3.34
185 186 2.928416 GATAAAATCGGGGAGGGCG 58.072 57.895 0.00 0.00 0.00 6.13
186 187 0.108019 GATAAAATCGGGGAGGGCGT 59.892 55.000 0.00 0.00 0.00 5.68
187 188 0.179029 ATAAAATCGGGGAGGGCGTG 60.179 55.000 0.00 0.00 0.00 5.34
188 189 2.879813 TAAAATCGGGGAGGGCGTGC 62.880 60.000 0.00 0.00 0.00 5.34
199 200 2.981350 GGCGTGCGGGAAAGGAAA 60.981 61.111 0.00 0.00 0.00 3.13
200 201 2.561373 GCGTGCGGGAAAGGAAAG 59.439 61.111 0.00 0.00 0.00 2.62
201 202 1.964373 GCGTGCGGGAAAGGAAAGA 60.964 57.895 0.00 0.00 0.00 2.52
202 203 1.512156 GCGTGCGGGAAAGGAAAGAA 61.512 55.000 0.00 0.00 0.00 2.52
203 204 0.948678 CGTGCGGGAAAGGAAAGAAA 59.051 50.000 0.00 0.00 0.00 2.52
204 205 1.539827 CGTGCGGGAAAGGAAAGAAAT 59.460 47.619 0.00 0.00 0.00 2.17
205 206 2.414161 CGTGCGGGAAAGGAAAGAAATC 60.414 50.000 0.00 0.00 0.00 2.17
206 207 1.810151 TGCGGGAAAGGAAAGAAATCG 59.190 47.619 0.00 0.00 0.00 3.34
207 208 1.132453 GCGGGAAAGGAAAGAAATCGG 59.868 52.381 0.00 0.00 0.00 4.18
208 209 1.743394 CGGGAAAGGAAAGAAATCGGG 59.257 52.381 0.00 0.00 0.00 5.14
209 210 2.100197 GGGAAAGGAAAGAAATCGGGG 58.900 52.381 0.00 0.00 0.00 5.73
210 211 2.100197 GGAAAGGAAAGAAATCGGGGG 58.900 52.381 0.00 0.00 0.00 5.40
211 212 2.291346 GGAAAGGAAAGAAATCGGGGGA 60.291 50.000 0.00 0.00 0.00 4.81
212 213 2.808906 AAGGAAAGAAATCGGGGGAG 57.191 50.000 0.00 0.00 0.00 4.30
213 214 0.919710 AGGAAAGAAATCGGGGGAGG 59.080 55.000 0.00 0.00 0.00 4.30
214 215 0.624254 GGAAAGAAATCGGGGGAGGT 59.376 55.000 0.00 0.00 0.00 3.85
215 216 1.408405 GGAAAGAAATCGGGGGAGGTC 60.408 57.143 0.00 0.00 0.00 3.85
216 217 0.252197 AAAGAAATCGGGGGAGGTCG 59.748 55.000 0.00 0.00 0.00 4.79
217 218 0.908180 AAGAAATCGGGGGAGGTCGT 60.908 55.000 0.00 0.00 0.00 4.34
218 219 1.153429 GAAATCGGGGGAGGTCGTG 60.153 63.158 0.00 0.00 0.00 4.35
219 220 3.325201 AAATCGGGGGAGGTCGTGC 62.325 63.158 0.00 0.00 0.00 5.34
225 226 4.011517 GGGAGGTCGTGCGGGAAA 62.012 66.667 0.00 0.00 0.00 3.13
226 227 2.434359 GGAGGTCGTGCGGGAAAG 60.434 66.667 0.00 0.00 0.00 2.62
227 228 2.434359 GAGGTCGTGCGGGAAAGG 60.434 66.667 0.00 0.00 0.00 3.11
228 229 2.920912 AGGTCGTGCGGGAAAGGA 60.921 61.111 0.00 0.00 0.00 3.36
229 230 2.031465 GGTCGTGCGGGAAAGGAA 59.969 61.111 0.00 0.00 0.00 3.36
230 231 2.033194 GGTCGTGCGGGAAAGGAAG 61.033 63.158 0.00 0.00 0.00 3.46
231 232 2.033194 GTCGTGCGGGAAAGGAAGG 61.033 63.158 0.00 0.00 0.00 3.46
232 233 2.211410 TCGTGCGGGAAAGGAAGGA 61.211 57.895 0.00 0.00 0.00 3.36
233 234 1.741770 CGTGCGGGAAAGGAAGGAG 60.742 63.158 0.00 0.00 0.00 3.69
234 235 1.677552 GTGCGGGAAAGGAAGGAGA 59.322 57.895 0.00 0.00 0.00 3.71
235 236 0.253327 GTGCGGGAAAGGAAGGAGAT 59.747 55.000 0.00 0.00 0.00 2.75
236 237 0.541863 TGCGGGAAAGGAAGGAGATC 59.458 55.000 0.00 0.00 0.00 2.75
237 238 0.530870 GCGGGAAAGGAAGGAGATCG 60.531 60.000 0.00 0.00 0.00 3.69
238 239 0.105039 CGGGAAAGGAAGGAGATCGG 59.895 60.000 0.00 0.00 0.00 4.18
239 240 0.470341 GGGAAAGGAAGGAGATCGGG 59.530 60.000 0.00 0.00 0.00 5.14
240 241 1.497161 GGAAAGGAAGGAGATCGGGA 58.503 55.000 0.00 0.00 0.00 5.14
241 242 1.414550 GGAAAGGAAGGAGATCGGGAG 59.585 57.143 0.00 0.00 0.00 4.30
242 243 1.414550 GAAAGGAAGGAGATCGGGAGG 59.585 57.143 0.00 0.00 0.00 4.30
243 244 1.051556 AAGGAAGGAGATCGGGAGGC 61.052 60.000 0.00 0.00 0.00 4.70
244 245 1.762460 GGAAGGAGATCGGGAGGCA 60.762 63.158 0.00 0.00 0.00 4.75
245 246 1.124477 GGAAGGAGATCGGGAGGCAT 61.124 60.000 0.00 0.00 0.00 4.40
246 247 0.034616 GAAGGAGATCGGGAGGCATG 59.965 60.000 0.00 0.00 0.00 4.06
247 248 2.031768 GGAGATCGGGAGGCATGC 59.968 66.667 9.90 9.90 0.00 4.06
248 249 2.356793 GAGATCGGGAGGCATGCG 60.357 66.667 12.44 0.00 0.00 4.73
249 250 3.873026 GAGATCGGGAGGCATGCGG 62.873 68.421 12.44 0.00 0.00 5.69
250 251 4.996434 GATCGGGAGGCATGCGGG 62.996 72.222 12.44 0.00 0.00 6.13
253 254 4.794648 CGGGAGGCATGCGGGAAA 62.795 66.667 12.44 0.00 0.00 3.13
254 255 2.830370 GGGAGGCATGCGGGAAAG 60.830 66.667 12.44 0.00 0.00 2.62
255 256 2.830370 GGAGGCATGCGGGAAAGG 60.830 66.667 12.44 0.00 0.00 3.11
256 257 2.272146 GAGGCATGCGGGAAAGGA 59.728 61.111 12.44 0.00 0.00 3.36
257 258 1.378514 GAGGCATGCGGGAAAGGAA 60.379 57.895 12.44 0.00 0.00 3.36
258 259 0.965363 GAGGCATGCGGGAAAGGAAA 60.965 55.000 12.44 0.00 0.00 3.13
259 260 0.967380 AGGCATGCGGGAAAGGAAAG 60.967 55.000 12.44 0.00 0.00 2.62
260 261 0.965363 GGCATGCGGGAAAGGAAAGA 60.965 55.000 12.44 0.00 0.00 2.52
261 262 0.887933 GCATGCGGGAAAGGAAAGAA 59.112 50.000 0.00 0.00 0.00 2.52
262 263 1.272212 GCATGCGGGAAAGGAAAGAAA 59.728 47.619 0.00 0.00 0.00 2.52
263 264 2.094026 GCATGCGGGAAAGGAAAGAAAT 60.094 45.455 0.00 0.00 0.00 2.17
264 265 3.774066 CATGCGGGAAAGGAAAGAAATC 58.226 45.455 0.00 0.00 0.00 2.17
265 266 1.810151 TGCGGGAAAGGAAAGAAATCG 59.190 47.619 0.00 0.00 0.00 3.34
266 267 2.081462 GCGGGAAAGGAAAGAAATCGA 58.919 47.619 0.00 0.00 0.00 3.59
267 268 2.096013 GCGGGAAAGGAAAGAAATCGAG 59.904 50.000 0.00 0.00 0.00 4.04
268 269 3.596214 CGGGAAAGGAAAGAAATCGAGA 58.404 45.455 0.00 0.00 0.00 4.04
269 270 3.619038 CGGGAAAGGAAAGAAATCGAGAG 59.381 47.826 0.00 0.00 0.00 3.20
270 271 3.942115 GGGAAAGGAAAGAAATCGAGAGG 59.058 47.826 0.00 0.00 0.00 3.69
271 272 4.323562 GGGAAAGGAAAGAAATCGAGAGGA 60.324 45.833 0.00 0.00 0.00 3.71
272 273 4.632251 GGAAAGGAAAGAAATCGAGAGGAC 59.368 45.833 0.00 0.00 0.00 3.85
273 274 3.512033 AGGAAAGAAATCGAGAGGACG 57.488 47.619 0.00 0.00 0.00 4.79
274 275 2.826725 AGGAAAGAAATCGAGAGGACGT 59.173 45.455 0.00 0.00 34.70 4.34
275 276 2.924290 GGAAAGAAATCGAGAGGACGTG 59.076 50.000 0.00 0.00 34.70 4.49
276 277 1.997669 AAGAAATCGAGAGGACGTGC 58.002 50.000 0.00 0.00 34.70 5.34
277 278 0.179161 AGAAATCGAGAGGACGTGCG 60.179 55.000 0.00 0.00 34.70 5.34
278 279 1.140407 GAAATCGAGAGGACGTGCGG 61.140 60.000 0.00 0.00 34.70 5.69
279 280 2.558554 AAATCGAGAGGACGTGCGGG 62.559 60.000 0.00 0.00 34.70 6.13
282 283 3.379445 GAGAGGACGTGCGGGGAA 61.379 66.667 0.00 0.00 0.00 3.97
283 284 3.358076 GAGAGGACGTGCGGGGAAG 62.358 68.421 0.00 0.00 0.00 3.46
284 285 4.452733 GAGGACGTGCGGGGAAGG 62.453 72.222 0.00 0.00 0.00 3.46
286 287 4.011517 GGACGTGCGGGGAAGGAA 62.012 66.667 0.00 0.00 0.00 3.36
287 288 2.434359 GACGTGCGGGGAAGGAAG 60.434 66.667 0.00 0.00 0.00 3.46
288 289 3.952628 GACGTGCGGGGAAGGAAGG 62.953 68.421 0.00 0.00 0.00 3.46
289 290 3.702048 CGTGCGGGGAAGGAAGGA 61.702 66.667 0.00 0.00 0.00 3.36
290 291 2.269241 GTGCGGGGAAGGAAGGAG 59.731 66.667 0.00 0.00 0.00 3.69
291 292 2.121832 TGCGGGGAAGGAAGGAGA 59.878 61.111 0.00 0.00 0.00 3.71
292 293 1.306997 TGCGGGGAAGGAAGGAGAT 60.307 57.895 0.00 0.00 0.00 2.75
293 294 1.338136 TGCGGGGAAGGAAGGAGATC 61.338 60.000 0.00 0.00 0.00 2.75
294 295 1.742768 CGGGGAAGGAAGGAGATCG 59.257 63.158 0.00 0.00 0.00 3.69
295 296 1.749334 CGGGGAAGGAAGGAGATCGG 61.749 65.000 0.00 0.00 0.00 4.18
296 297 1.411651 GGGGAAGGAAGGAGATCGGG 61.412 65.000 0.00 0.00 0.00 5.14
297 298 0.398664 GGGAAGGAAGGAGATCGGGA 60.399 60.000 0.00 0.00 0.00 5.14
298 299 1.044611 GGAAGGAAGGAGATCGGGAG 58.955 60.000 0.00 0.00 0.00 4.30
299 300 1.044611 GAAGGAAGGAGATCGGGAGG 58.955 60.000 0.00 0.00 0.00 4.30
300 301 0.399233 AAGGAAGGAGATCGGGAGGG 60.399 60.000 0.00 0.00 0.00 4.30
301 302 1.233369 GGAAGGAGATCGGGAGGGA 59.767 63.158 0.00 0.00 0.00 4.20
302 303 0.398664 GGAAGGAGATCGGGAGGGAA 60.399 60.000 0.00 0.00 0.00 3.97
303 304 0.753867 GAAGGAGATCGGGAGGGAAC 59.246 60.000 0.00 0.00 0.00 3.62
305 306 0.397816 AGGAGATCGGGAGGGAACTG 60.398 60.000 0.00 0.00 44.43 3.16
306 307 0.397254 GGAGATCGGGAGGGAACTGA 60.397 60.000 0.00 0.00 44.43 3.41
307 308 0.747852 GAGATCGGGAGGGAACTGAC 59.252 60.000 0.00 0.00 44.43 3.51
308 309 1.038130 AGATCGGGAGGGAACTGACG 61.038 60.000 0.00 0.00 44.43 4.35
309 310 2.017559 GATCGGGAGGGAACTGACGG 62.018 65.000 0.00 0.00 44.43 4.79
310 311 4.452733 CGGGAGGGAACTGACGGC 62.453 72.222 0.00 0.00 44.43 5.68
311 312 4.452733 GGGAGGGAACTGACGGCG 62.453 72.222 4.80 4.80 44.43 6.46
313 314 4.070552 GAGGGAACTGACGGCGCT 62.071 66.667 6.90 0.00 44.43 5.92
314 315 4.379243 AGGGAACTGACGGCGCTG 62.379 66.667 16.39 16.39 41.13 5.18
316 317 4.373116 GGAACTGACGGCGCTGGA 62.373 66.667 22.44 5.54 0.00 3.86
317 318 2.125512 GAACTGACGGCGCTGGAT 60.126 61.111 22.44 0.00 0.00 3.41
318 319 2.434884 AACTGACGGCGCTGGATG 60.435 61.111 22.44 11.83 0.00 3.51
335 336 2.050533 GCGTGTGGCAATTTCGCA 60.051 55.556 17.14 0.00 45.01 5.10
336 337 1.659954 GCGTGTGGCAATTTCGCAA 60.660 52.632 17.14 0.00 45.01 4.85
337 338 1.008361 GCGTGTGGCAATTTCGCAAT 61.008 50.000 17.14 0.00 45.01 3.56
338 339 0.984109 CGTGTGGCAATTTCGCAATC 59.016 50.000 0.00 0.00 0.00 2.67
339 340 1.401409 CGTGTGGCAATTTCGCAATCT 60.401 47.619 0.00 0.00 0.00 2.40
340 341 1.987770 GTGTGGCAATTTCGCAATCTG 59.012 47.619 0.00 0.00 0.00 2.90
341 342 0.994263 GTGGCAATTTCGCAATCTGC 59.006 50.000 0.00 6.46 40.69 4.26
342 343 0.108709 TGGCAATTTCGCAATCTGCC 60.109 50.000 19.17 19.17 41.12 4.85
343 344 0.108709 GGCAATTTCGCAATCTGCCA 60.109 50.000 20.25 0.00 41.49 4.92
344 345 0.994263 GCAATTTCGCAATCTGCCAC 59.006 50.000 4.51 0.00 41.12 5.01
345 346 1.669502 GCAATTTCGCAATCTGCCACA 60.670 47.619 4.51 0.00 41.12 4.17
346 347 1.987770 CAATTTCGCAATCTGCCACAC 59.012 47.619 0.00 0.00 41.12 3.82
347 348 0.168788 ATTTCGCAATCTGCCACACG 59.831 50.000 0.00 0.00 41.12 4.49
348 349 1.851021 TTTCGCAATCTGCCACACGG 61.851 55.000 0.00 0.00 41.12 4.94
349 350 3.049674 CGCAATCTGCCACACGGT 61.050 61.111 0.00 0.00 41.12 4.83
350 351 2.616330 CGCAATCTGCCACACGGTT 61.616 57.895 0.00 0.00 41.12 4.44
351 352 1.081242 GCAATCTGCCACACGGTTG 60.081 57.895 0.00 0.00 37.42 3.77
352 353 1.081242 CAATCTGCCACACGGTTGC 60.081 57.895 0.00 0.00 33.28 4.17
353 354 2.616330 AATCTGCCACACGGTTGCG 61.616 57.895 0.00 0.00 33.28 4.85
354 355 3.529341 ATCTGCCACACGGTTGCGA 62.529 57.895 0.00 0.00 33.28 5.10
355 356 3.716006 CTGCCACACGGTTGCGAG 61.716 66.667 0.00 0.00 33.28 5.03
356 357 4.228567 TGCCACACGGTTGCGAGA 62.229 61.111 0.00 0.00 33.28 4.04
357 358 2.742372 GCCACACGGTTGCGAGAT 60.742 61.111 0.00 0.00 33.28 2.75
358 359 1.447140 GCCACACGGTTGCGAGATA 60.447 57.895 0.00 0.00 33.28 1.98
359 360 1.693083 GCCACACGGTTGCGAGATAC 61.693 60.000 0.00 0.00 33.28 2.24
360 361 0.389296 CCACACGGTTGCGAGATACA 60.389 55.000 0.00 0.00 0.00 2.29
361 362 1.640428 CACACGGTTGCGAGATACAT 58.360 50.000 0.00 0.00 0.00 2.29
362 363 1.999735 CACACGGTTGCGAGATACATT 59.000 47.619 0.00 0.00 0.00 2.71
363 364 2.415168 CACACGGTTGCGAGATACATTT 59.585 45.455 0.00 0.00 0.00 2.32
364 365 3.071479 ACACGGTTGCGAGATACATTTT 58.929 40.909 0.00 0.00 0.00 1.82
365 366 3.500680 ACACGGTTGCGAGATACATTTTT 59.499 39.130 0.00 0.00 0.00 1.94
366 367 4.088648 CACGGTTGCGAGATACATTTTTC 58.911 43.478 0.00 0.00 0.00 2.29
367 368 3.181524 ACGGTTGCGAGATACATTTTTCG 60.182 43.478 0.00 0.00 36.23 3.46
368 369 3.181524 CGGTTGCGAGATACATTTTTCGT 60.182 43.478 0.00 0.00 35.61 3.85
369 370 4.031991 CGGTTGCGAGATACATTTTTCGTA 59.968 41.667 0.00 0.00 35.61 3.43
370 371 5.276678 CGGTTGCGAGATACATTTTTCGTAT 60.277 40.000 0.00 0.00 35.61 3.06
371 372 6.074729 CGGTTGCGAGATACATTTTTCGTATA 60.075 38.462 0.00 0.00 35.61 1.47
372 373 7.358931 CGGTTGCGAGATACATTTTTCGTATAT 60.359 37.037 0.00 0.00 35.61 0.86
373 374 7.950496 GGTTGCGAGATACATTTTTCGTATATC 59.050 37.037 0.00 0.00 35.29 1.63
374 375 8.484799 GTTGCGAGATACATTTTTCGTATATCA 58.515 33.333 0.00 0.00 37.40 2.15
375 376 8.582433 TGCGAGATACATTTTTCGTATATCAA 57.418 30.769 0.00 0.00 37.40 2.57
376 377 9.203421 TGCGAGATACATTTTTCGTATATCAAT 57.797 29.630 0.00 0.00 37.40 2.57
407 408 9.692749 CACTTTTTATCTTTACCTTTTTCTCCC 57.307 33.333 0.00 0.00 0.00 4.30
408 409 9.656323 ACTTTTTATCTTTACCTTTTTCTCCCT 57.344 29.630 0.00 0.00 0.00 4.20
511 527 1.601419 TAGCCACTACACGCCCTGAC 61.601 60.000 0.00 0.00 0.00 3.51
523 539 2.760385 CCTGACGGGGTCCCTCTC 60.760 72.222 8.15 3.14 0.00 3.20
597 614 2.766400 CGCTCCGGTGAGACTCCTC 61.766 68.421 7.92 0.00 41.42 3.71
598 615 2.419739 GCTCCGGTGAGACTCCTCC 61.420 68.421 7.92 2.05 41.42 4.30
599 616 1.000771 CTCCGGTGAGACTCCTCCA 60.001 63.158 0.00 0.00 41.42 3.86
601 618 2.716017 CCGGTGAGACTCCTCCAGC 61.716 68.421 12.30 0.00 38.66 4.85
604 621 1.107945 GGTGAGACTCCTCCAGCTAC 58.892 60.000 0.00 0.00 38.66 3.58
610 627 0.966370 ACTCCTCCAGCTACGTGTCC 60.966 60.000 0.00 0.00 0.00 4.02
614 631 1.877576 CTCCAGCTACGTGTCCTGCA 61.878 60.000 0.00 0.00 0.00 4.41
620 637 1.659098 GCTACGTGTCCTGCATACAAC 59.341 52.381 0.00 0.00 0.00 3.32
621 638 2.929161 GCTACGTGTCCTGCATACAACA 60.929 50.000 0.00 0.00 0.00 3.33
622 639 1.508632 ACGTGTCCTGCATACAACAC 58.491 50.000 3.78 7.15 35.21 3.32
623 640 1.070134 ACGTGTCCTGCATACAACACT 59.930 47.619 14.89 4.50 36.02 3.55
624 641 1.726791 CGTGTCCTGCATACAACACTC 59.273 52.381 14.89 0.51 36.02 3.51
625 642 2.766313 GTGTCCTGCATACAACACTCA 58.234 47.619 11.55 0.00 35.53 3.41
626 643 2.480419 GTGTCCTGCATACAACACTCAC 59.520 50.000 11.55 0.00 35.53 3.51
627 644 2.103941 TGTCCTGCATACAACACTCACA 59.896 45.455 0.00 0.00 0.00 3.58
628 645 2.480419 GTCCTGCATACAACACTCACAC 59.520 50.000 0.00 0.00 0.00 3.82
677 694 1.327303 GCAAACAATGAGGTGTGGGA 58.673 50.000 0.00 0.00 0.00 4.37
888 912 6.406961 CCTGACAATGTTCATACCTAGCACTA 60.407 42.308 0.00 0.00 0.00 2.74
984 1010 8.659925 AATCAGCATAACAGAGAGAATACAAG 57.340 34.615 0.00 0.00 0.00 3.16
985 1011 7.175347 TCAGCATAACAGAGAGAATACAAGT 57.825 36.000 0.00 0.00 0.00 3.16
986 1012 7.261325 TCAGCATAACAGAGAGAATACAAGTC 58.739 38.462 0.00 0.00 0.00 3.01
991 1017 3.196685 ACAGAGAGAATACAAGTCAGGGC 59.803 47.826 0.00 0.00 0.00 5.19
992 1018 3.196469 CAGAGAGAATACAAGTCAGGGCA 59.804 47.826 0.00 0.00 0.00 5.36
1335 1361 2.049063 GTCGTTGCGCTCTCCACT 60.049 61.111 9.73 0.00 0.00 4.00
1386 1412 0.324614 ACCACATCAAGATCACCGCA 59.675 50.000 0.00 0.00 0.00 5.69
1449 1475 1.446099 CGTGTATGGCTGTGACGCT 60.446 57.895 0.16 0.00 0.00 5.07
1461 1487 1.343142 TGTGACGCTGACCACAACTAT 59.657 47.619 0.00 0.00 39.97 2.12
1576 1602 2.906389 TGGTCAGAGGAGTAAACAGCAT 59.094 45.455 0.00 0.00 0.00 3.79
1657 4497 3.321950 AGGAATATGCAACTAGGAGCCT 58.678 45.455 0.00 0.00 0.00 4.58
1663 4503 1.153549 CAACTAGGAGCCTCCGTGC 60.154 63.158 4.80 0.00 42.75 5.34
1665 4505 2.829003 CTAGGAGCCTCCGTGCGA 60.829 66.667 4.80 0.00 42.75 5.10
1668 4508 0.889638 TAGGAGCCTCCGTGCGATAG 60.890 60.000 4.80 0.00 42.75 2.08
1669 4509 2.336809 GAGCCTCCGTGCGATAGG 59.663 66.667 8.07 8.07 36.02 2.57
1672 4512 1.115930 AGCCTCCGTGCGATAGGAAT 61.116 55.000 14.22 2.75 39.13 3.01
1675 4515 2.426024 GCCTCCGTGCGATAGGAATATA 59.574 50.000 14.22 0.00 39.13 0.86
1676 4516 3.119245 GCCTCCGTGCGATAGGAATATAA 60.119 47.826 14.22 0.00 39.13 0.98
1759 4599 2.653726 TGGGAGTAATTTGCGATGCAT 58.346 42.857 0.00 0.00 38.76 3.96
1760 4600 2.358582 TGGGAGTAATTTGCGATGCATG 59.641 45.455 2.46 0.00 38.76 4.06
1777 4617 1.618343 CATGGACAACCCCCAAACTTC 59.382 52.381 0.00 0.00 37.22 3.01
1797 4640 7.301868 ACTTCCAATGCCTTTATCTGAAAAA 57.698 32.000 0.00 0.00 0.00 1.94
1853 4698 9.606631 GTAGAAAACCAGATATTGAGACAATCT 57.393 33.333 0.00 0.00 0.00 2.40
1891 4736 0.310543 GAAACACGCACTTGGATGCA 59.689 50.000 0.00 0.00 46.47 3.96
1892 4737 0.961019 AAACACGCACTTGGATGCAT 59.039 45.000 0.00 0.00 46.47 3.96
1927 4772 6.627087 TCTTTAGTGTCCAGGAAATCTGAT 57.373 37.500 0.00 0.00 46.18 2.90
1932 4777 3.873952 GTGTCCAGGAAATCTGATACAGC 59.126 47.826 0.00 0.00 46.18 4.40
2377 5241 4.367039 ACATGCCTACTTAAACCAGTGT 57.633 40.909 0.00 0.00 0.00 3.55
2386 5250 7.820872 GCCTACTTAAACCAGTGTTATAGTTCA 59.179 37.037 0.00 0.00 33.15 3.18
2525 5389 5.730010 GCAATTGCTGATTTCTGAGCTCTAC 60.730 44.000 23.21 0.89 36.11 2.59
2545 5409 4.783560 ACATAAAGTACCCACCCATACC 57.216 45.455 0.00 0.00 0.00 2.73
2556 5420 2.172505 CCACCCATACCACTTGAGCATA 59.827 50.000 0.00 0.00 0.00 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.482006 CTCACCTATGACACTCATTGTTGA 58.518 41.667 0.00 0.00 39.17 3.18
1 2 4.633126 CCTCACCTATGACACTCATTGTTG 59.367 45.833 0.00 0.00 39.17 3.33
2 3 4.287067 ACCTCACCTATGACACTCATTGTT 59.713 41.667 0.00 0.00 39.17 2.83
3 4 3.840666 ACCTCACCTATGACACTCATTGT 59.159 43.478 0.00 0.00 43.10 2.71
4 5 4.186926 CACCTCACCTATGACACTCATTG 58.813 47.826 0.00 0.00 38.26 2.82
5 6 3.198635 CCACCTCACCTATGACACTCATT 59.801 47.826 0.00 0.00 38.26 2.57
6 7 2.768527 CCACCTCACCTATGACACTCAT 59.231 50.000 0.00 0.00 40.72 2.90
7 8 2.179427 CCACCTCACCTATGACACTCA 58.821 52.381 0.00 0.00 0.00 3.41
8 9 2.180276 ACCACCTCACCTATGACACTC 58.820 52.381 0.00 0.00 0.00 3.51
9 10 2.327325 ACCACCTCACCTATGACACT 57.673 50.000 0.00 0.00 0.00 3.55
10 11 3.679083 GCTAACCACCTCACCTATGACAC 60.679 52.174 0.00 0.00 0.00 3.67
11 12 2.500098 GCTAACCACCTCACCTATGACA 59.500 50.000 0.00 0.00 0.00 3.58
12 13 2.766828 AGCTAACCACCTCACCTATGAC 59.233 50.000 0.00 0.00 0.00 3.06
13 14 3.031736 GAGCTAACCACCTCACCTATGA 58.968 50.000 0.00 0.00 0.00 2.15
14 15 2.103263 GGAGCTAACCACCTCACCTATG 59.897 54.545 0.00 0.00 0.00 2.23
15 16 2.399580 GGAGCTAACCACCTCACCTAT 58.600 52.381 0.00 0.00 0.00 2.57
16 17 1.621622 GGGAGCTAACCACCTCACCTA 60.622 57.143 2.14 0.00 0.00 3.08
17 18 0.910088 GGGAGCTAACCACCTCACCT 60.910 60.000 2.14 0.00 0.00 4.00
18 19 0.910088 AGGGAGCTAACCACCTCACC 60.910 60.000 9.41 0.00 31.84 4.02
19 20 0.984995 AAGGGAGCTAACCACCTCAC 59.015 55.000 9.41 0.00 31.69 3.51
20 21 1.351017 CAAAGGGAGCTAACCACCTCA 59.649 52.381 9.41 0.00 31.69 3.86
21 22 1.351350 ACAAAGGGAGCTAACCACCTC 59.649 52.381 9.41 0.00 31.69 3.85
22 23 1.446016 ACAAAGGGAGCTAACCACCT 58.554 50.000 9.41 0.00 34.04 4.00
23 24 1.886542 CAACAAAGGGAGCTAACCACC 59.113 52.381 9.41 0.00 0.00 4.61
24 25 2.858745 TCAACAAAGGGAGCTAACCAC 58.141 47.619 9.41 0.00 0.00 4.16
25 26 3.806949 ATCAACAAAGGGAGCTAACCA 57.193 42.857 9.41 0.00 0.00 3.67
26 27 4.398358 GGTAATCAACAAAGGGAGCTAACC 59.602 45.833 0.00 0.00 0.00 2.85
27 28 5.123979 CAGGTAATCAACAAAGGGAGCTAAC 59.876 44.000 0.00 0.00 0.00 2.34
28 29 5.222048 ACAGGTAATCAACAAAGGGAGCTAA 60.222 40.000 0.00 0.00 0.00 3.09
29 30 4.288626 ACAGGTAATCAACAAAGGGAGCTA 59.711 41.667 0.00 0.00 0.00 3.32
30 31 3.074538 ACAGGTAATCAACAAAGGGAGCT 59.925 43.478 0.00 0.00 0.00 4.09
31 32 3.421844 ACAGGTAATCAACAAAGGGAGC 58.578 45.455 0.00 0.00 0.00 4.70
32 33 6.049955 TCTACAGGTAATCAACAAAGGGAG 57.950 41.667 0.00 0.00 0.00 4.30
33 34 6.183361 TGTTCTACAGGTAATCAACAAAGGGA 60.183 38.462 0.00 0.00 0.00 4.20
34 35 6.001460 TGTTCTACAGGTAATCAACAAAGGG 58.999 40.000 0.00 0.00 0.00 3.95
35 36 6.934645 TCTGTTCTACAGGTAATCAACAAAGG 59.065 38.462 6.96 0.00 45.94 3.11
36 37 7.872993 TCTCTGTTCTACAGGTAATCAACAAAG 59.127 37.037 6.96 0.00 45.94 2.77
37 38 7.732025 TCTCTGTTCTACAGGTAATCAACAAA 58.268 34.615 6.96 0.00 45.94 2.83
38 39 7.297936 TCTCTGTTCTACAGGTAATCAACAA 57.702 36.000 6.96 0.00 45.94 2.83
39 40 6.911250 TCTCTGTTCTACAGGTAATCAACA 57.089 37.500 6.96 0.00 45.94 3.33
40 41 7.548097 TGATCTCTGTTCTACAGGTAATCAAC 58.452 38.462 6.96 0.00 45.94 3.18
41 42 7.718334 TGATCTCTGTTCTACAGGTAATCAA 57.282 36.000 6.96 0.00 45.94 2.57
42 43 7.718334 TTGATCTCTGTTCTACAGGTAATCA 57.282 36.000 6.96 9.95 45.94 2.57
43 44 9.255304 GATTTGATCTCTGTTCTACAGGTAATC 57.745 37.037 6.96 7.99 45.94 1.75
44 45 8.207545 GGATTTGATCTCTGTTCTACAGGTAAT 58.792 37.037 6.96 0.00 45.94 1.89
45 46 7.400339 AGGATTTGATCTCTGTTCTACAGGTAA 59.600 37.037 6.96 0.00 45.94 2.85
46 47 6.897966 AGGATTTGATCTCTGTTCTACAGGTA 59.102 38.462 6.96 0.00 45.94 3.08
47 48 5.723887 AGGATTTGATCTCTGTTCTACAGGT 59.276 40.000 6.96 0.00 45.94 4.00
48 49 6.232581 AGGATTTGATCTCTGTTCTACAGG 57.767 41.667 6.96 0.00 45.94 4.00
50 51 7.068839 GGACTAGGATTTGATCTCTGTTCTACA 59.931 40.741 0.00 0.00 0.00 2.74
51 52 7.068839 TGGACTAGGATTTGATCTCTGTTCTAC 59.931 40.741 0.00 0.00 0.00 2.59
52 53 7.126061 TGGACTAGGATTTGATCTCTGTTCTA 58.874 38.462 0.00 0.00 0.00 2.10
53 54 5.960811 TGGACTAGGATTTGATCTCTGTTCT 59.039 40.000 0.00 0.00 0.00 3.01
54 55 6.227298 TGGACTAGGATTTGATCTCTGTTC 57.773 41.667 0.00 0.00 0.00 3.18
55 56 6.627087 TTGGACTAGGATTTGATCTCTGTT 57.373 37.500 0.00 0.00 0.00 3.16
56 57 5.396213 GCTTGGACTAGGATTTGATCTCTGT 60.396 44.000 0.00 0.00 0.00 3.41
57 58 5.055812 GCTTGGACTAGGATTTGATCTCTG 58.944 45.833 0.00 0.00 0.00 3.35
58 59 4.718774 TGCTTGGACTAGGATTTGATCTCT 59.281 41.667 0.00 0.00 0.00 3.10
59 60 5.028549 TGCTTGGACTAGGATTTGATCTC 57.971 43.478 0.00 0.00 0.00 2.75
60 61 5.643421 ATGCTTGGACTAGGATTTGATCT 57.357 39.130 0.00 0.00 0.00 2.75
61 62 7.992754 ATAATGCTTGGACTAGGATTTGATC 57.007 36.000 5.94 0.00 37.39 2.92
62 63 8.773033 AAATAATGCTTGGACTAGGATTTGAT 57.227 30.769 5.94 0.00 37.39 2.57
63 64 8.593945 AAAATAATGCTTGGACTAGGATTTGA 57.406 30.769 5.94 0.00 37.39 2.69
64 65 9.090692 CAAAAATAATGCTTGGACTAGGATTTG 57.909 33.333 5.94 0.00 37.39 2.32
65 66 7.765819 GCAAAAATAATGCTTGGACTAGGATTT 59.234 33.333 5.94 0.00 40.64 2.17
66 67 7.267857 GCAAAAATAATGCTTGGACTAGGATT 58.732 34.615 5.92 5.92 40.64 3.01
67 68 6.809869 GCAAAAATAATGCTTGGACTAGGAT 58.190 36.000 0.00 0.00 40.64 3.24
68 69 6.207691 GCAAAAATAATGCTTGGACTAGGA 57.792 37.500 0.00 0.00 40.64 2.94
79 80 5.580297 TCCCGATTTTCAGCAAAAATAATGC 59.420 36.000 9.11 0.00 45.47 3.56
80 81 7.201548 CCTTCCCGATTTTCAGCAAAAATAATG 60.202 37.037 9.11 4.31 45.47 1.90
81 82 6.818142 CCTTCCCGATTTTCAGCAAAAATAAT 59.182 34.615 9.11 0.00 45.47 1.28
82 83 6.015010 TCCTTCCCGATTTTCAGCAAAAATAA 60.015 34.615 9.11 1.83 45.47 1.40
83 84 5.478679 TCCTTCCCGATTTTCAGCAAAAATA 59.521 36.000 9.11 0.00 45.47 1.40
85 86 3.639094 TCCTTCCCGATTTTCAGCAAAAA 59.361 39.130 0.26 0.26 40.98 1.94
86 87 3.226777 TCCTTCCCGATTTTCAGCAAAA 58.773 40.909 0.00 0.00 35.92 2.44
87 88 2.870175 TCCTTCCCGATTTTCAGCAAA 58.130 42.857 0.00 0.00 0.00 3.68
88 89 2.577606 TCCTTCCCGATTTTCAGCAA 57.422 45.000 0.00 0.00 0.00 3.91
89 90 2.436417 CTTCCTTCCCGATTTTCAGCA 58.564 47.619 0.00 0.00 0.00 4.41
90 91 1.745653 CCTTCCTTCCCGATTTTCAGC 59.254 52.381 0.00 0.00 0.00 4.26
91 92 1.745653 GCCTTCCTTCCCGATTTTCAG 59.254 52.381 0.00 0.00 0.00 3.02
92 93 1.834188 GCCTTCCTTCCCGATTTTCA 58.166 50.000 0.00 0.00 0.00 2.69
93 94 0.733150 CGCCTTCCTTCCCGATTTTC 59.267 55.000 0.00 0.00 0.00 2.29
94 95 1.313091 GCGCCTTCCTTCCCGATTTT 61.313 55.000 0.00 0.00 0.00 1.82
95 96 1.749258 GCGCCTTCCTTCCCGATTT 60.749 57.895 0.00 0.00 0.00 2.17
96 97 2.124695 GCGCCTTCCTTCCCGATT 60.125 61.111 0.00 0.00 0.00 3.34
97 98 4.530857 CGCGCCTTCCTTCCCGAT 62.531 66.667 0.00 0.00 0.00 4.18
110 111 2.026014 CAATTATGGCCCACGCGC 59.974 61.111 5.73 0.00 35.02 6.86
111 112 1.355210 GTCAATTATGGCCCACGCG 59.645 57.895 3.53 3.53 35.02 6.01
112 113 1.092921 TCGTCAATTATGGCCCACGC 61.093 55.000 0.00 0.00 0.00 5.34
113 114 1.593196 ATCGTCAATTATGGCCCACG 58.407 50.000 0.00 0.00 0.00 4.94
114 115 3.880490 TGTAATCGTCAATTATGGCCCAC 59.120 43.478 0.00 0.00 32.53 4.61
115 116 4.157849 TGTAATCGTCAATTATGGCCCA 57.842 40.909 0.00 0.00 32.53 5.36
116 117 5.508200 TTTGTAATCGTCAATTATGGCCC 57.492 39.130 0.00 0.00 32.53 5.80
117 118 8.419076 AATTTTTGTAATCGTCAATTATGGCC 57.581 30.769 0.00 0.00 32.53 5.36
123 124 9.855021 CCTTCCTAATTTTTGTAATCGTCAATT 57.145 29.630 0.00 0.00 0.00 2.32
124 125 7.973944 GCCTTCCTAATTTTTGTAATCGTCAAT 59.026 33.333 0.00 0.00 0.00 2.57
125 126 7.040340 TGCCTTCCTAATTTTTGTAATCGTCAA 60.040 33.333 0.00 0.00 0.00 3.18
126 127 6.431543 TGCCTTCCTAATTTTTGTAATCGTCA 59.568 34.615 0.00 0.00 0.00 4.35
127 128 6.745907 GTGCCTTCCTAATTTTTGTAATCGTC 59.254 38.462 0.00 0.00 0.00 4.20
128 129 6.617879 GTGCCTTCCTAATTTTTGTAATCGT 58.382 36.000 0.00 0.00 0.00 3.73
129 130 5.737290 CGTGCCTTCCTAATTTTTGTAATCG 59.263 40.000 0.00 0.00 0.00 3.34
130 131 6.848451 TCGTGCCTTCCTAATTTTTGTAATC 58.152 36.000 0.00 0.00 0.00 1.75
131 132 6.625081 GCTCGTGCCTTCCTAATTTTTGTAAT 60.625 38.462 0.00 0.00 0.00 1.89
132 133 5.335348 GCTCGTGCCTTCCTAATTTTTGTAA 60.335 40.000 0.00 0.00 0.00 2.41
133 134 4.155280 GCTCGTGCCTTCCTAATTTTTGTA 59.845 41.667 0.00 0.00 0.00 2.41
134 135 3.057526 GCTCGTGCCTTCCTAATTTTTGT 60.058 43.478 0.00 0.00 0.00 2.83
135 136 3.057596 TGCTCGTGCCTTCCTAATTTTTG 60.058 43.478 7.05 0.00 38.71 2.44
136 137 3.153919 TGCTCGTGCCTTCCTAATTTTT 58.846 40.909 7.05 0.00 38.71 1.94
137 138 2.749621 CTGCTCGTGCCTTCCTAATTTT 59.250 45.455 7.05 0.00 38.71 1.82
138 139 2.359900 CTGCTCGTGCCTTCCTAATTT 58.640 47.619 7.05 0.00 38.71 1.82
139 140 1.407437 CCTGCTCGTGCCTTCCTAATT 60.407 52.381 7.05 0.00 38.71 1.40
140 141 0.179000 CCTGCTCGTGCCTTCCTAAT 59.821 55.000 7.05 0.00 38.71 1.73
141 142 1.192146 ACCTGCTCGTGCCTTCCTAA 61.192 55.000 7.05 0.00 38.71 2.69
142 143 1.609501 ACCTGCTCGTGCCTTCCTA 60.610 57.895 7.05 0.00 38.71 2.94
143 144 2.925170 ACCTGCTCGTGCCTTCCT 60.925 61.111 7.05 0.00 38.71 3.36
144 145 2.743928 CACCTGCTCGTGCCTTCC 60.744 66.667 7.05 0.00 38.71 3.46
145 146 2.031163 ACACCTGCTCGTGCCTTC 59.969 61.111 7.05 0.00 37.25 3.46
146 147 2.281070 CACACCTGCTCGTGCCTT 60.281 61.111 7.05 0.00 37.25 4.35
153 154 0.392461 TTTATCGGGCACACCTGCTC 60.392 55.000 0.00 0.00 43.66 4.26
154 155 0.037590 TTTTATCGGGCACACCTGCT 59.962 50.000 0.00 0.00 43.66 4.24
155 156 1.065551 GATTTTATCGGGCACACCTGC 59.934 52.381 0.00 0.00 42.73 4.85
167 168 0.108019 ACGCCCTCCCCGATTTTATC 59.892 55.000 0.00 0.00 0.00 1.75
168 169 0.179029 CACGCCCTCCCCGATTTTAT 60.179 55.000 0.00 0.00 0.00 1.40
169 170 1.222387 CACGCCCTCCCCGATTTTA 59.778 57.895 0.00 0.00 0.00 1.52
170 171 2.045340 CACGCCCTCCCCGATTTT 60.045 61.111 0.00 0.00 0.00 1.82
171 172 4.796495 GCACGCCCTCCCCGATTT 62.796 66.667 0.00 0.00 0.00 2.17
182 183 2.978018 CTTTCCTTTCCCGCACGCC 61.978 63.158 0.00 0.00 0.00 5.68
183 184 1.512156 TTCTTTCCTTTCCCGCACGC 61.512 55.000 0.00 0.00 0.00 5.34
184 185 0.948678 TTTCTTTCCTTTCCCGCACG 59.051 50.000 0.00 0.00 0.00 5.34
185 186 2.414161 CGATTTCTTTCCTTTCCCGCAC 60.414 50.000 0.00 0.00 0.00 5.34
186 187 1.810151 CGATTTCTTTCCTTTCCCGCA 59.190 47.619 0.00 0.00 0.00 5.69
187 188 1.132453 CCGATTTCTTTCCTTTCCCGC 59.868 52.381 0.00 0.00 0.00 6.13
188 189 1.743394 CCCGATTTCTTTCCTTTCCCG 59.257 52.381 0.00 0.00 0.00 5.14
189 190 2.100197 CCCCGATTTCTTTCCTTTCCC 58.900 52.381 0.00 0.00 0.00 3.97
190 191 2.100197 CCCCCGATTTCTTTCCTTTCC 58.900 52.381 0.00 0.00 0.00 3.13
191 192 3.017442 CTCCCCCGATTTCTTTCCTTTC 58.983 50.000 0.00 0.00 0.00 2.62
192 193 2.291605 CCTCCCCCGATTTCTTTCCTTT 60.292 50.000 0.00 0.00 0.00 3.11
193 194 1.285078 CCTCCCCCGATTTCTTTCCTT 59.715 52.381 0.00 0.00 0.00 3.36
194 195 0.919710 CCTCCCCCGATTTCTTTCCT 59.080 55.000 0.00 0.00 0.00 3.36
195 196 0.624254 ACCTCCCCCGATTTCTTTCC 59.376 55.000 0.00 0.00 0.00 3.13
196 197 1.742750 CGACCTCCCCCGATTTCTTTC 60.743 57.143 0.00 0.00 0.00 2.62
197 198 0.252197 CGACCTCCCCCGATTTCTTT 59.748 55.000 0.00 0.00 0.00 2.52
198 199 0.908180 ACGACCTCCCCCGATTTCTT 60.908 55.000 0.00 0.00 0.00 2.52
199 200 1.305887 ACGACCTCCCCCGATTTCT 60.306 57.895 0.00 0.00 0.00 2.52
200 201 1.153429 CACGACCTCCCCCGATTTC 60.153 63.158 0.00 0.00 0.00 2.17
201 202 2.987125 CACGACCTCCCCCGATTT 59.013 61.111 0.00 0.00 0.00 2.17
202 203 3.782443 GCACGACCTCCCCCGATT 61.782 66.667 0.00 0.00 0.00 3.34
208 209 3.952628 CTTTCCCGCACGACCTCCC 62.953 68.421 0.00 0.00 0.00 4.30
209 210 2.434359 CTTTCCCGCACGACCTCC 60.434 66.667 0.00 0.00 0.00 4.30
210 211 2.434359 CCTTTCCCGCACGACCTC 60.434 66.667 0.00 0.00 0.00 3.85
211 212 2.450479 CTTCCTTTCCCGCACGACCT 62.450 60.000 0.00 0.00 0.00 3.85
212 213 2.031465 TTCCTTTCCCGCACGACC 59.969 61.111 0.00 0.00 0.00 4.79
213 214 2.033194 CCTTCCTTTCCCGCACGAC 61.033 63.158 0.00 0.00 0.00 4.34
214 215 2.167398 CTCCTTCCTTTCCCGCACGA 62.167 60.000 0.00 0.00 0.00 4.35
215 216 1.741770 CTCCTTCCTTTCCCGCACG 60.742 63.158 0.00 0.00 0.00 5.34
216 217 0.253327 ATCTCCTTCCTTTCCCGCAC 59.747 55.000 0.00 0.00 0.00 5.34
217 218 0.541863 GATCTCCTTCCTTTCCCGCA 59.458 55.000 0.00 0.00 0.00 5.69
218 219 0.530870 CGATCTCCTTCCTTTCCCGC 60.531 60.000 0.00 0.00 0.00 6.13
219 220 0.105039 CCGATCTCCTTCCTTTCCCG 59.895 60.000 0.00 0.00 0.00 5.14
220 221 0.470341 CCCGATCTCCTTCCTTTCCC 59.530 60.000 0.00 0.00 0.00 3.97
221 222 1.414550 CTCCCGATCTCCTTCCTTTCC 59.585 57.143 0.00 0.00 0.00 3.13
222 223 1.414550 CCTCCCGATCTCCTTCCTTTC 59.585 57.143 0.00 0.00 0.00 2.62
223 224 1.501582 CCTCCCGATCTCCTTCCTTT 58.498 55.000 0.00 0.00 0.00 3.11
224 225 1.051556 GCCTCCCGATCTCCTTCCTT 61.052 60.000 0.00 0.00 0.00 3.36
225 226 1.458588 GCCTCCCGATCTCCTTCCT 60.459 63.158 0.00 0.00 0.00 3.36
226 227 1.124477 ATGCCTCCCGATCTCCTTCC 61.124 60.000 0.00 0.00 0.00 3.46
227 228 0.034616 CATGCCTCCCGATCTCCTTC 59.965 60.000 0.00 0.00 0.00 3.46
228 229 2.049627 GCATGCCTCCCGATCTCCTT 62.050 60.000 6.36 0.00 0.00 3.36
229 230 2.515071 GCATGCCTCCCGATCTCCT 61.515 63.158 6.36 0.00 0.00 3.69
230 231 2.031768 GCATGCCTCCCGATCTCC 59.968 66.667 6.36 0.00 0.00 3.71
231 232 2.356793 CGCATGCCTCCCGATCTC 60.357 66.667 13.15 0.00 0.00 2.75
232 233 3.933722 CCGCATGCCTCCCGATCT 61.934 66.667 13.15 0.00 0.00 2.75
233 234 4.996434 CCCGCATGCCTCCCGATC 62.996 72.222 13.15 0.00 0.00 3.69
236 237 4.794648 TTTCCCGCATGCCTCCCG 62.795 66.667 13.15 0.00 0.00 5.14
237 238 2.830370 CTTTCCCGCATGCCTCCC 60.830 66.667 13.15 0.00 0.00 4.30
238 239 2.830370 CCTTTCCCGCATGCCTCC 60.830 66.667 13.15 0.00 0.00 4.30
239 240 0.965363 TTTCCTTTCCCGCATGCCTC 60.965 55.000 13.15 0.00 0.00 4.70
240 241 0.967380 CTTTCCTTTCCCGCATGCCT 60.967 55.000 13.15 0.00 0.00 4.75
241 242 0.965363 TCTTTCCTTTCCCGCATGCC 60.965 55.000 13.15 0.00 0.00 4.40
242 243 0.887933 TTCTTTCCTTTCCCGCATGC 59.112 50.000 7.91 7.91 0.00 4.06
243 244 3.731867 CGATTTCTTTCCTTTCCCGCATG 60.732 47.826 0.00 0.00 0.00 4.06
244 245 2.423538 CGATTTCTTTCCTTTCCCGCAT 59.576 45.455 0.00 0.00 0.00 4.73
245 246 1.810151 CGATTTCTTTCCTTTCCCGCA 59.190 47.619 0.00 0.00 0.00 5.69
246 247 2.081462 TCGATTTCTTTCCTTTCCCGC 58.919 47.619 0.00 0.00 0.00 6.13
247 248 3.596214 TCTCGATTTCTTTCCTTTCCCG 58.404 45.455 0.00 0.00 0.00 5.14
248 249 3.942115 CCTCTCGATTTCTTTCCTTTCCC 59.058 47.826 0.00 0.00 0.00 3.97
249 250 4.632251 GTCCTCTCGATTTCTTTCCTTTCC 59.368 45.833 0.00 0.00 0.00 3.13
250 251 4.327627 CGTCCTCTCGATTTCTTTCCTTTC 59.672 45.833 0.00 0.00 0.00 2.62
251 252 4.246458 CGTCCTCTCGATTTCTTTCCTTT 58.754 43.478 0.00 0.00 0.00 3.11
252 253 3.258622 ACGTCCTCTCGATTTCTTTCCTT 59.741 43.478 0.00 0.00 34.70 3.36
253 254 2.826725 ACGTCCTCTCGATTTCTTTCCT 59.173 45.455 0.00 0.00 34.70 3.36
254 255 2.924290 CACGTCCTCTCGATTTCTTTCC 59.076 50.000 0.00 0.00 34.70 3.13
255 256 2.345942 GCACGTCCTCTCGATTTCTTTC 59.654 50.000 0.00 0.00 34.70 2.62
256 257 2.338500 GCACGTCCTCTCGATTTCTTT 58.662 47.619 0.00 0.00 34.70 2.52
257 258 1.732732 CGCACGTCCTCTCGATTTCTT 60.733 52.381 0.00 0.00 34.70 2.52
258 259 0.179161 CGCACGTCCTCTCGATTTCT 60.179 55.000 0.00 0.00 34.70 2.52
259 260 1.140407 CCGCACGTCCTCTCGATTTC 61.140 60.000 0.00 0.00 34.70 2.17
260 261 1.153823 CCGCACGTCCTCTCGATTT 60.154 57.895 0.00 0.00 34.70 2.17
261 262 2.490217 CCGCACGTCCTCTCGATT 59.510 61.111 0.00 0.00 34.70 3.34
262 263 3.518998 CCCGCACGTCCTCTCGAT 61.519 66.667 0.00 0.00 34.70 3.59
265 266 3.358076 CTTCCCCGCACGTCCTCTC 62.358 68.421 0.00 0.00 0.00 3.20
266 267 3.382832 CTTCCCCGCACGTCCTCT 61.383 66.667 0.00 0.00 0.00 3.69
267 268 4.452733 CCTTCCCCGCACGTCCTC 62.453 72.222 0.00 0.00 0.00 3.71
269 270 3.952628 CTTCCTTCCCCGCACGTCC 62.953 68.421 0.00 0.00 0.00 4.79
270 271 2.434359 CTTCCTTCCCCGCACGTC 60.434 66.667 0.00 0.00 0.00 4.34
271 272 4.016706 CCTTCCTTCCCCGCACGT 62.017 66.667 0.00 0.00 0.00 4.49
272 273 3.665675 CTCCTTCCTTCCCCGCACG 62.666 68.421 0.00 0.00 0.00 5.34
273 274 1.627297 ATCTCCTTCCTTCCCCGCAC 61.627 60.000 0.00 0.00 0.00 5.34
274 275 1.306997 ATCTCCTTCCTTCCCCGCA 60.307 57.895 0.00 0.00 0.00 5.69
275 276 1.448069 GATCTCCTTCCTTCCCCGC 59.552 63.158 0.00 0.00 0.00 6.13
276 277 1.742768 CGATCTCCTTCCTTCCCCG 59.257 63.158 0.00 0.00 0.00 5.73
277 278 1.411651 CCCGATCTCCTTCCTTCCCC 61.412 65.000 0.00 0.00 0.00 4.81
278 279 0.398664 TCCCGATCTCCTTCCTTCCC 60.399 60.000 0.00 0.00 0.00 3.97
279 280 1.044611 CTCCCGATCTCCTTCCTTCC 58.955 60.000 0.00 0.00 0.00 3.46
280 281 1.044611 CCTCCCGATCTCCTTCCTTC 58.955 60.000 0.00 0.00 0.00 3.46
281 282 0.399233 CCCTCCCGATCTCCTTCCTT 60.399 60.000 0.00 0.00 0.00 3.36
282 283 1.234529 CCCTCCCGATCTCCTTCCT 59.765 63.158 0.00 0.00 0.00 3.36
283 284 0.398664 TTCCCTCCCGATCTCCTTCC 60.399 60.000 0.00 0.00 0.00 3.46
284 285 0.753867 GTTCCCTCCCGATCTCCTTC 59.246 60.000 0.00 0.00 0.00 3.46
285 286 0.340208 AGTTCCCTCCCGATCTCCTT 59.660 55.000 0.00 0.00 0.00 3.36
286 287 0.397816 CAGTTCCCTCCCGATCTCCT 60.398 60.000 0.00 0.00 0.00 3.69
287 288 0.397254 TCAGTTCCCTCCCGATCTCC 60.397 60.000 0.00 0.00 0.00 3.71
288 289 0.747852 GTCAGTTCCCTCCCGATCTC 59.252 60.000 0.00 0.00 0.00 2.75
289 290 1.038130 CGTCAGTTCCCTCCCGATCT 61.038 60.000 0.00 0.00 0.00 2.75
290 291 1.437986 CGTCAGTTCCCTCCCGATC 59.562 63.158 0.00 0.00 0.00 3.69
291 292 2.058595 CCGTCAGTTCCCTCCCGAT 61.059 63.158 0.00 0.00 0.00 4.18
292 293 2.678934 CCGTCAGTTCCCTCCCGA 60.679 66.667 0.00 0.00 0.00 5.14
293 294 4.452733 GCCGTCAGTTCCCTCCCG 62.453 72.222 0.00 0.00 0.00 5.14
294 295 4.452733 CGCCGTCAGTTCCCTCCC 62.453 72.222 0.00 0.00 0.00 4.30
296 297 4.070552 AGCGCCGTCAGTTCCCTC 62.071 66.667 2.29 0.00 0.00 4.30
297 298 4.379243 CAGCGCCGTCAGTTCCCT 62.379 66.667 2.29 0.00 0.00 4.20
299 300 3.665675 ATCCAGCGCCGTCAGTTCC 62.666 63.158 2.29 0.00 0.00 3.62
300 301 2.125512 ATCCAGCGCCGTCAGTTC 60.126 61.111 2.29 0.00 0.00 3.01
301 302 2.434884 CATCCAGCGCCGTCAGTT 60.435 61.111 2.29 0.00 0.00 3.16
319 320 0.984109 GATTGCGAAATTGCCACACG 59.016 50.000 0.00 0.00 0.00 4.49
320 321 1.987770 CAGATTGCGAAATTGCCACAC 59.012 47.619 0.00 0.00 0.00 3.82
321 322 1.669502 GCAGATTGCGAAATTGCCACA 60.670 47.619 10.49 0.00 31.71 4.17
322 323 0.994263 GCAGATTGCGAAATTGCCAC 59.006 50.000 10.49 0.00 31.71 5.01
323 324 3.422122 GCAGATTGCGAAATTGCCA 57.578 47.368 10.49 0.00 31.71 4.92
324 325 2.669419 GGCAGATTGCGAAATTGCC 58.331 52.632 19.85 19.85 46.21 4.52
325 326 0.994263 GTGGCAGATTGCGAAATTGC 59.006 50.000 12.31 12.31 46.21 3.56
326 327 1.987770 GTGTGGCAGATTGCGAAATTG 59.012 47.619 0.00 0.00 46.21 2.32
327 328 1.401409 CGTGTGGCAGATTGCGAAATT 60.401 47.619 0.00 0.00 46.21 1.82
328 329 0.168788 CGTGTGGCAGATTGCGAAAT 59.831 50.000 0.00 0.00 46.21 2.17
329 330 1.573932 CGTGTGGCAGATTGCGAAA 59.426 52.632 0.00 0.00 46.21 3.46
330 331 2.324330 CCGTGTGGCAGATTGCGAA 61.324 57.895 0.00 0.00 46.21 4.70
331 332 2.741985 CCGTGTGGCAGATTGCGA 60.742 61.111 0.00 0.00 46.21 5.10
332 333 2.616330 AACCGTGTGGCAGATTGCG 61.616 57.895 0.00 0.00 46.21 4.85
333 334 1.081242 CAACCGTGTGGCAGATTGC 60.081 57.895 0.00 0.00 44.08 3.56
334 335 1.081242 GCAACCGTGTGGCAGATTG 60.081 57.895 0.00 0.00 39.70 2.67
335 336 2.616330 CGCAACCGTGTGGCAGATT 61.616 57.895 4.60 0.00 39.70 2.40
336 337 3.049674 CGCAACCGTGTGGCAGAT 61.050 61.111 4.60 0.00 39.70 2.90
337 338 4.228567 TCGCAACCGTGTGGCAGA 62.229 61.111 4.60 0.00 39.70 4.26
338 339 3.716006 CTCGCAACCGTGTGGCAG 61.716 66.667 4.60 0.00 39.70 4.85
339 340 2.161078 TATCTCGCAACCGTGTGGCA 62.161 55.000 4.60 0.00 39.70 4.92
340 341 1.447140 TATCTCGCAACCGTGTGGC 60.447 57.895 0.00 0.00 39.70 5.01
341 342 0.389296 TGTATCTCGCAACCGTGTGG 60.389 55.000 0.00 0.00 42.84 4.17
342 343 1.640428 ATGTATCTCGCAACCGTGTG 58.360 50.000 0.00 0.00 36.54 3.82
343 344 2.380084 AATGTATCTCGCAACCGTGT 57.620 45.000 0.00 0.00 35.54 4.49
344 345 3.740044 AAAATGTATCTCGCAACCGTG 57.260 42.857 0.00 0.00 35.54 4.94
345 346 3.181524 CGAAAAATGTATCTCGCAACCGT 60.182 43.478 0.00 0.00 35.54 4.83
346 347 3.181524 ACGAAAAATGTATCTCGCAACCG 60.182 43.478 0.00 0.00 34.70 4.44
347 348 4.336532 ACGAAAAATGTATCTCGCAACC 57.663 40.909 0.00 0.00 34.70 3.77
348 349 8.484799 TGATATACGAAAAATGTATCTCGCAAC 58.515 33.333 0.00 0.00 34.51 4.17
349 350 8.582433 TGATATACGAAAAATGTATCTCGCAA 57.418 30.769 0.00 0.00 34.51 4.85
350 351 8.582433 TTGATATACGAAAAATGTATCTCGCA 57.418 30.769 0.00 0.00 34.51 5.10
381 382 9.692749 GGGAGAAAAAGGTAAAGATAAAAAGTG 57.307 33.333 0.00 0.00 0.00 3.16
382 383 9.656323 AGGGAGAAAAAGGTAAAGATAAAAAGT 57.344 29.630 0.00 0.00 0.00 2.66
387 388 9.734984 CAAGTAGGGAGAAAAAGGTAAAGATAA 57.265 33.333 0.00 0.00 0.00 1.75
388 389 8.887393 ACAAGTAGGGAGAAAAAGGTAAAGATA 58.113 33.333 0.00 0.00 0.00 1.98
389 390 7.756614 ACAAGTAGGGAGAAAAAGGTAAAGAT 58.243 34.615 0.00 0.00 0.00 2.40
390 391 7.145474 ACAAGTAGGGAGAAAAAGGTAAAGA 57.855 36.000 0.00 0.00 0.00 2.52
391 392 7.818997 AACAAGTAGGGAGAAAAAGGTAAAG 57.181 36.000 0.00 0.00 0.00 1.85
392 393 8.598202 AAAACAAGTAGGGAGAAAAAGGTAAA 57.402 30.769 0.00 0.00 0.00 2.01
393 394 8.598202 AAAAACAAGTAGGGAGAAAAAGGTAA 57.402 30.769 0.00 0.00 0.00 2.85
394 395 8.057011 AGAAAAACAAGTAGGGAGAAAAAGGTA 58.943 33.333 0.00 0.00 0.00 3.08
395 396 6.895756 AGAAAAACAAGTAGGGAGAAAAAGGT 59.104 34.615 0.00 0.00 0.00 3.50
396 397 7.348080 AGAAAAACAAGTAGGGAGAAAAAGG 57.652 36.000 0.00 0.00 0.00 3.11
397 398 8.687242 AGAAGAAAAACAAGTAGGGAGAAAAAG 58.313 33.333 0.00 0.00 0.00 2.27
398 399 8.589701 AGAAGAAAAACAAGTAGGGAGAAAAA 57.410 30.769 0.00 0.00 0.00 1.94
399 400 8.589701 AAGAAGAAAAACAAGTAGGGAGAAAA 57.410 30.769 0.00 0.00 0.00 2.29
400 401 7.284716 GGAAGAAGAAAAACAAGTAGGGAGAAA 59.715 37.037 0.00 0.00 0.00 2.52
401 402 6.771267 GGAAGAAGAAAAACAAGTAGGGAGAA 59.229 38.462 0.00 0.00 0.00 2.87
402 403 6.101296 AGGAAGAAGAAAAACAAGTAGGGAGA 59.899 38.462 0.00 0.00 0.00 3.71
403 404 6.299922 AGGAAGAAGAAAAACAAGTAGGGAG 58.700 40.000 0.00 0.00 0.00 4.30
404 405 6.262056 AGGAAGAAGAAAAACAAGTAGGGA 57.738 37.500 0.00 0.00 0.00 4.20
405 406 6.321435 ACAAGGAAGAAGAAAAACAAGTAGGG 59.679 38.462 0.00 0.00 0.00 3.53
406 407 7.334844 ACAAGGAAGAAGAAAAACAAGTAGG 57.665 36.000 0.00 0.00 0.00 3.18
407 408 7.640240 CGAACAAGGAAGAAGAAAAACAAGTAG 59.360 37.037 0.00 0.00 0.00 2.57
408 409 7.120138 ACGAACAAGGAAGAAGAAAAACAAGTA 59.880 33.333 0.00 0.00 0.00 2.24
409 410 6.072119 ACGAACAAGGAAGAAGAAAAACAAGT 60.072 34.615 0.00 0.00 0.00 3.16
523 539 1.881252 CCGAAACTCCATACGCCCG 60.881 63.158 0.00 0.00 0.00 6.13
597 614 0.459899 TATGCAGGACACGTAGCTGG 59.540 55.000 0.00 0.00 0.00 4.85
598 615 1.135112 TGTATGCAGGACACGTAGCTG 60.135 52.381 0.00 0.00 0.00 4.24
599 616 1.182667 TGTATGCAGGACACGTAGCT 58.817 50.000 0.18 0.00 0.00 3.32
601 618 2.666508 GTGTTGTATGCAGGACACGTAG 59.333 50.000 3.79 0.00 33.88 3.51
604 621 1.726791 GAGTGTTGTATGCAGGACACG 59.273 52.381 11.54 0.00 45.20 4.49
610 627 1.136252 GCGTGTGAGTGTTGTATGCAG 60.136 52.381 0.00 0.00 0.00 4.41
614 631 2.248280 TTGGCGTGTGAGTGTTGTAT 57.752 45.000 0.00 0.00 0.00 2.29
620 637 0.865769 GTACCTTTGGCGTGTGAGTG 59.134 55.000 0.00 0.00 0.00 3.51
621 638 0.466543 TGTACCTTTGGCGTGTGAGT 59.533 50.000 0.00 0.00 0.00 3.41
622 639 0.865769 GTGTACCTTTGGCGTGTGAG 59.134 55.000 0.00 0.00 0.00 3.51
623 640 0.178301 TGTGTACCTTTGGCGTGTGA 59.822 50.000 0.00 0.00 0.00 3.58
624 641 0.586319 CTGTGTACCTTTGGCGTGTG 59.414 55.000 0.00 0.00 0.00 3.82
625 642 0.179468 ACTGTGTACCTTTGGCGTGT 59.821 50.000 0.00 0.00 0.00 4.49
626 643 0.586319 CACTGTGTACCTTTGGCGTG 59.414 55.000 0.00 0.00 0.00 5.34
627 644 0.466543 TCACTGTGTACCTTTGGCGT 59.533 50.000 7.79 0.00 0.00 5.68
628 645 0.865769 GTCACTGTGTACCTTTGGCG 59.134 55.000 7.79 0.00 0.00 5.69
698 716 5.163343 ACACTTGGTGTAGCCGATAATATGT 60.163 40.000 1.18 0.00 45.56 2.29
702 720 3.906720 ACACTTGGTGTAGCCGATAAT 57.093 42.857 1.18 0.00 45.56 1.28
888 912 2.816411 TGTAGTACCCTTGCTGCTAGT 58.184 47.619 10.07 0.74 0.00 2.57
984 1010 1.337167 GCCATTTCAGTTTGCCCTGAC 60.337 52.381 0.00 0.00 41.05 3.51
985 1011 0.968405 GCCATTTCAGTTTGCCCTGA 59.032 50.000 0.00 0.00 39.65 3.86
986 1012 0.037046 GGCCATTTCAGTTTGCCCTG 60.037 55.000 0.00 0.00 36.07 4.45
991 1017 4.053295 CTGAAGTTGGCCATTTCAGTTTG 58.947 43.478 32.51 19.51 41.66 2.93
992 1018 3.960102 TCTGAAGTTGGCCATTTCAGTTT 59.040 39.130 35.56 15.94 44.99 2.66
1242 1268 0.108585 TGCCCTTCTCGAAGCTGTTT 59.891 50.000 1.13 0.00 37.11 2.83
1335 1361 1.619654 CCATGTTCTTGAACCAGCCA 58.380 50.000 10.51 0.00 0.00 4.75
1370 1396 1.464608 CGTTTGCGGTGATCTTGATGT 59.535 47.619 0.00 0.00 0.00 3.06
1386 1412 1.480205 CGTACACGGACTTGTCGTTT 58.520 50.000 0.00 0.00 38.94 3.60
1449 1475 1.555075 GGAGGCTCATAGTTGTGGTCA 59.445 52.381 17.69 0.00 0.00 4.02
1461 1487 3.070878 TGTTATTATCGCATGGAGGCTCA 59.929 43.478 17.69 2.84 0.00 4.26
1576 1602 3.020237 TATGCCTGCCACGCGGTTA 62.020 57.895 12.47 0.00 32.22 2.85
1651 4491 2.336809 CTATCGCACGGAGGCTCC 59.663 66.667 24.06 24.06 0.00 4.70
1657 4497 6.460781 ACAATTTATATTCCTATCGCACGGA 58.539 36.000 0.00 0.00 0.00 4.69
1663 4503 9.938280 TTACAGGGACAATTTATATTCCTATCG 57.062 33.333 0.00 0.00 0.00 2.92
1735 4575 4.065088 GCATCGCAAATTACTCCCATAGA 58.935 43.478 0.00 0.00 0.00 1.98
1759 4599 0.105913 GGAAGTTTGGGGGTTGTCCA 60.106 55.000 0.00 0.00 37.22 4.02
1760 4600 0.105913 TGGAAGTTTGGGGGTTGTCC 60.106 55.000 0.00 0.00 0.00 4.02
1798 4641 8.621286 CCTGTGTAGTCACTTAATTCTGTTTTT 58.379 33.333 0.00 0.00 44.14 1.94
1803 4646 6.706270 ACAACCTGTGTAGTCACTTAATTCTG 59.294 38.462 0.00 0.00 44.14 3.02
1825 4668 9.739276 ATTGTCTCAATATCTGGTTTTCTACAA 57.261 29.630 0.00 0.00 0.00 2.41
1834 4677 4.039730 CCCGAGATTGTCTCAATATCTGGT 59.960 45.833 14.68 0.00 43.55 4.00
1836 4679 5.459536 TCCCGAGATTGTCTCAATATCTG 57.540 43.478 12.85 7.97 43.55 2.90
1853 4698 0.181114 CTGGATGATTTGGCTCCCGA 59.819 55.000 0.00 0.00 0.00 5.14
1908 4753 5.163405 GCTGTATCAGATTTCCTGGACACTA 60.163 44.000 0.00 0.00 43.12 2.74
1927 4772 8.995027 AAATATGGTCTGATTATTTGGCTGTA 57.005 30.769 0.00 0.00 0.00 2.74
1932 4777 8.469309 ACTGGAAATATGGTCTGATTATTTGG 57.531 34.615 7.49 3.17 0.00 3.28
2172 5019 8.830580 CGAATAGAATGGTAGTTGATCAATTGT 58.169 33.333 12.12 1.92 0.00 2.71
2365 5229 8.827177 TCACTGAACTATAACACTGGTTTAAG 57.173 34.615 0.00 0.00 38.45 1.85
2377 5241 5.204409 ACCGTGTGTTCACTGAACTATAA 57.796 39.130 20.18 0.21 42.39 0.98
2386 5250 2.561419 ACTATGCTACCGTGTGTTCACT 59.439 45.455 4.59 0.00 41.89 3.41
2525 5389 4.165372 AGTGGTATGGGTGGGTACTTTATG 59.835 45.833 0.00 0.00 0.00 1.90
2545 5409 6.845302 TGAACTATTGCTTTATGCTCAAGTG 58.155 36.000 0.00 0.00 43.37 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.