Multiple sequence alignment - TraesCS1B01G182900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G182900 chr1B 100.000 1903 0 0 1 1903 329762404 329764306 0.000000e+00 3515.0
1 TraesCS1B01G182900 chr1B 100.000 1621 0 0 2194 3814 329764597 329766217 0.000000e+00 2994.0
2 TraesCS1B01G182900 chr1B 92.994 157 9 2 2829 2983 504521361 504521517 1.070000e-55 228.0
3 TraesCS1B01G182900 chr1B 93.960 149 8 1 2832 2979 28297475 28297327 1.380000e-54 224.0
4 TraesCS1B01G182900 chr1B 89.109 101 1 2 598 693 329762957 329763052 2.410000e-22 117.0
5 TraesCS1B01G182900 chr1B 89.109 101 1 2 554 649 329763001 329763096 2.410000e-22 117.0
6 TraesCS1B01G182900 chr1D 94.845 970 34 4 650 1604 247868140 247867172 0.000000e+00 1500.0
7 TraesCS1B01G182900 chr1D 90.879 603 40 3 1 603 247868681 247868094 0.000000e+00 795.0
8 TraesCS1B01G182900 chr1D 93.726 526 31 2 2308 2831 247859571 247859046 0.000000e+00 787.0
9 TraesCS1B01G182900 chr1D 90.952 420 33 4 3398 3814 247858456 247858039 9.250000e-156 560.0
10 TraesCS1B01G182900 chr1D 95.692 325 13 1 2981 3305 247859062 247858739 4.370000e-144 521.0
11 TraesCS1B01G182900 chr1D 94.253 174 10 0 1725 1898 57509739 57509912 2.260000e-67 267.0
12 TraesCS1B01G182900 chr1D 91.250 160 11 3 2824 2982 367162526 367162683 8.300000e-52 215.0
13 TraesCS1B01G182900 chr1D 100.000 31 0 0 132 162 165833895 165833925 1.480000e-04 58.4
14 TraesCS1B01G182900 chr1D 89.130 46 5 0 121 166 350415956 350415911 1.480000e-04 58.4
15 TraesCS1B01G182900 chr1D 96.774 31 1 0 132 162 418146398 418146428 7.000000e-03 52.8
16 TraesCS1B01G182900 chr1A 95.368 734 24 5 647 1376 299261160 299261887 0.000000e+00 1158.0
17 TraesCS1B01G182900 chr1A 89.988 839 60 13 2981 3814 299268404 299269223 0.000000e+00 1062.0
18 TraesCS1B01G182900 chr1A 93.950 595 34 2 2239 2831 299267826 299268420 0.000000e+00 898.0
19 TraesCS1B01G182900 chr1A 87.938 257 16 3 1363 1604 299267381 299267637 4.820000e-74 289.0
20 TraesCS1B01G182900 chr1A 93.878 98 3 1 503 600 299261109 299261203 1.100000e-30 145.0
21 TraesCS1B01G182900 chr1A 94.872 39 2 0 2195 2233 186978116 186978078 1.140000e-05 62.1
22 TraesCS1B01G182900 chr1A 96.774 31 1 0 598 628 299261160 299261190 7.000000e-03 52.8
23 TraesCS1B01G182900 chr2B 86.814 857 75 14 769 1604 93934816 93933977 0.000000e+00 922.0
24 TraesCS1B01G182900 chr2B 91.275 596 48 4 2239 2831 93933952 93933358 0.000000e+00 809.0
25 TraesCS1B01G182900 chr2B 77.595 607 110 18 2239 2830 94202746 94202151 1.010000e-90 344.0
26 TraesCS1B01G182900 chr2B 92.715 151 10 1 2832 2981 401276432 401276582 2.310000e-52 217.0
27 TraesCS1B01G182900 chr2B 89.634 164 14 3 2817 2979 118587879 118588040 4.990000e-49 206.0
28 TraesCS1B01G182900 chr2B 73.555 571 120 26 2230 2790 94224407 94223858 5.030000e-44 189.0
29 TraesCS1B01G182900 chr2B 92.500 120 8 1 488 606 93934972 93934853 1.820000e-38 171.0
30 TraesCS1B01G182900 chr2B 95.699 93 4 0 651 743 93934902 93934810 2.370000e-32 150.0
31 TraesCS1B01G182900 chr2D 85.897 858 76 19 778 1604 60108999 60108156 0.000000e+00 872.0
32 TraesCS1B01G182900 chr2D 91.275 596 48 4 2239 2831 60108135 60107541 0.000000e+00 809.0
33 TraesCS1B01G182900 chr2D 94.253 174 10 0 1725 1898 295068094 295067921 2.260000e-67 267.0
34 TraesCS1B01G182900 chr2D 94.915 118 6 0 1609 1726 216959311 216959428 6.510000e-43 185.0
35 TraesCS1B01G182900 chr2D 94.872 117 6 0 1610 1726 539011348 539011464 2.340000e-42 183.0
36 TraesCS1B01G182900 chr2D 74.775 444 87 22 2366 2803 60138236 60137812 3.920000e-40 176.0
37 TraesCS1B01G182900 chr2D 96.970 99 3 0 2981 3079 60107557 60107459 2.360000e-37 167.0
38 TraesCS1B01G182900 chr2D 95.455 88 4 0 656 743 60109092 60109005 1.430000e-29 141.0
39 TraesCS1B01G182900 chr2D 83.200 125 12 3 488 603 60109176 60109052 5.210000e-19 106.0
40 TraesCS1B01G182900 chr2D 100.000 35 0 0 2194 2228 15853126 15853092 8.840000e-07 65.8
41 TraesCS1B01G182900 chr2D 89.130 46 5 0 121 166 382800444 382800489 1.480000e-04 58.4
42 TraesCS1B01G182900 chr2A 84.532 737 67 17 834 1537 60101211 60100489 0.000000e+00 686.0
43 TraesCS1B01G182900 chr2A 82.646 582 91 7 2239 2814 60100332 60099755 1.220000e-139 507.0
44 TraesCS1B01G182900 chr2A 77.385 566 108 14 2239 2793 60609193 60608637 6.150000e-83 318.0
45 TraesCS1B01G182900 chr2A 76.254 598 120 15 2239 2823 60195174 60194586 8.010000e-77 298.0
46 TraesCS1B01G182900 chr2A 92.715 151 10 1 2832 2981 768200697 768200847 2.310000e-52 217.0
47 TraesCS1B01G182900 chr2A 74.779 452 91 19 2357 2803 60711116 60710683 8.420000e-42 182.0
48 TraesCS1B01G182900 chr2A 100.000 35 0 0 2194 2228 667590235 667590201 8.840000e-07 65.8
49 TraesCS1B01G182900 chr5D 94.253 174 10 0 1725 1898 40260628 40260801 2.260000e-67 267.0
50 TraesCS1B01G182900 chr5D 93.678 174 11 0 1725 1898 355212988 355213161 1.050000e-65 261.0
51 TraesCS1B01G182900 chr5D 94.915 118 6 0 1609 1726 402860472 402860355 6.510000e-43 185.0
52 TraesCS1B01G182900 chr5D 94.068 118 7 0 1609 1726 542714146 542714029 3.030000e-41 180.0
53 TraesCS1B01G182900 chr5D 84.874 119 11 6 52 166 385074259 385074144 3.110000e-21 113.0
54 TraesCS1B01G182900 chr5D 89.130 46 5 0 121 166 163456914 163456959 1.480000e-04 58.4
55 TraesCS1B01G182900 chr7A 94.253 174 9 1 1725 1898 586935669 586935841 8.120000e-67 265.0
56 TraesCS1B01G182900 chr7A 97.436 39 0 1 2194 2232 74680273 74680236 8.840000e-07 65.8
57 TraesCS1B01G182900 chr7D 93.678 174 11 0 1725 1898 348321515 348321342 1.050000e-65 261.0
58 TraesCS1B01G182900 chr7D 93.678 174 11 0 1725 1898 625193825 625193652 1.050000e-65 261.0
59 TraesCS1B01G182900 chr7D 92.737 179 13 0 1725 1903 579042882 579042704 3.780000e-65 259.0
60 TraesCS1B01G182900 chr7D 94.872 117 6 0 1610 1726 469701694 469701578 2.340000e-42 183.0
61 TraesCS1B01G182900 chr7D 89.130 46 5 0 121 166 219100512 219100557 1.480000e-04 58.4
62 TraesCS1B01G182900 chr7D 96.774 31 1 0 132 162 377247051 377247081 7.000000e-03 52.8
63 TraesCS1B01G182900 chr4D 93.678 174 11 0 1725 1898 354996198 354996025 1.050000e-65 261.0
64 TraesCS1B01G182900 chr4D 94.068 118 7 0 1609 1726 94312222 94312339 3.030000e-41 180.0
65 TraesCS1B01G182900 chr4D 94.068 118 7 0 1609 1726 170193330 170193213 3.030000e-41 180.0
66 TraesCS1B01G182900 chr4D 94.068 118 7 0 1609 1726 178673801 178673918 3.030000e-41 180.0
67 TraesCS1B01G182900 chr4D 100.000 35 0 0 2194 2228 354996011 354995977 8.840000e-07 65.8
68 TraesCS1B01G182900 chr4D 93.023 43 1 2 2194 2236 177672656 177672616 1.140000e-05 62.1
69 TraesCS1B01G182900 chr4D 89.130 46 5 0 121 166 340627567 340627612 1.480000e-04 58.4
70 TraesCS1B01G182900 chr4D 100.000 28 0 0 135 162 332895095 332895068 7.000000e-03 52.8
71 TraesCS1B01G182900 chr6B 93.377 151 9 1 2833 2982 561645209 561645359 4.960000e-54 222.0
72 TraesCS1B01G182900 chr6B 92.258 155 10 2 2827 2980 413647405 413647558 6.410000e-53 219.0
73 TraesCS1B01G182900 chr6B 92.715 151 10 1 2832 2981 663017838 663017988 2.310000e-52 217.0
74 TraesCS1B01G182900 chr6D 94.068 118 7 0 1609 1726 460052335 460052218 3.030000e-41 180.0
75 TraesCS1B01G182900 chr6D 89.583 48 3 2 119 166 418092296 418092251 4.110000e-05 60.2
76 TraesCS1B01G182900 chr6D 100.000 28 0 0 135 162 155776274 155776247 7.000000e-03 52.8
77 TraesCS1B01G182900 chr6D 96.774 31 1 0 132 162 339310474 339310504 7.000000e-03 52.8
78 TraesCS1B01G182900 chr5A 97.436 39 0 1 2194 2232 614694646 614694609 8.840000e-07 65.8
79 TraesCS1B01G182900 chr6A 93.023 43 1 2 2194 2235 540318933 540318892 1.140000e-05 62.1
80 TraesCS1B01G182900 chr6A 89.130 46 5 0 121 166 458790841 458790796 1.480000e-04 58.4
81 TraesCS1B01G182900 chr3A 95.000 40 1 1 2194 2233 592677183 592677221 1.140000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G182900 chr1B 329762404 329766217 3813 False 1685.750000 3515 94.554500 1 3814 4 chr1B.!!$F2 3813
1 TraesCS1B01G182900 chr1D 247867172 247868681 1509 True 1147.500000 1500 92.862000 1 1604 2 chr1D.!!$R3 1603
2 TraesCS1B01G182900 chr1D 247858039 247859571 1532 True 622.666667 787 93.456667 2308 3814 3 chr1D.!!$R2 1506
3 TraesCS1B01G182900 chr1A 299267381 299269223 1842 False 749.666667 1062 90.625333 1363 3814 3 chr1A.!!$F2 2451
4 TraesCS1B01G182900 chr1A 299261109 299261887 778 False 451.933333 1158 95.340000 503 1376 3 chr1A.!!$F1 873
5 TraesCS1B01G182900 chr2B 93933358 93934972 1614 True 513.000000 922 91.572000 488 2831 4 chr2B.!!$R3 2343
6 TraesCS1B01G182900 chr2B 94202151 94202746 595 True 344.000000 344 77.595000 2239 2830 1 chr2B.!!$R1 591
7 TraesCS1B01G182900 chr2D 60107459 60109176 1717 True 419.000000 872 90.559400 488 3079 5 chr2D.!!$R4 2591
8 TraesCS1B01G182900 chr2A 60099755 60101211 1456 True 596.500000 686 83.589000 834 2814 2 chr2A.!!$R5 1980
9 TraesCS1B01G182900 chr2A 60608637 60609193 556 True 318.000000 318 77.385000 2239 2793 1 chr2A.!!$R2 554
10 TraesCS1B01G182900 chr2A 60194586 60195174 588 True 298.000000 298 76.254000 2239 2823 1 chr2A.!!$R1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
224 225 0.249073 CTGAGGAACATACTCCGGCG 60.249 60.0 0.00 0.0 40.75 6.46 F
1081 1118 0.110509 GCTGTCGACGACGTTCTACA 60.111 55.0 22.06 6.4 40.69 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2223 2401 0.179059 TCCCACGCATGCACGATTAT 60.179 50.0 19.57 0.00 36.7 1.28 R
2872 3063 0.036010 AAACTCGGATGGACTGGCAG 60.036 55.0 14.16 14.16 0.0 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 3.504863 CAGACATGATTTTTCCCGCAAG 58.495 45.455 0.00 0.00 0.00 4.01
41 42 2.094545 AGACATGATTTTTCCCGCAAGC 60.095 45.455 0.00 0.00 0.00 4.01
42 43 1.895131 ACATGATTTTTCCCGCAAGCT 59.105 42.857 0.00 0.00 0.00 3.74
50 51 3.802948 TTTCCCGCAAGCTAAAAACAA 57.197 38.095 0.00 0.00 0.00 2.83
84 85 3.069980 GAGCGACACGGCCTCTCAT 62.070 63.158 0.00 0.00 0.00 2.90
107 108 1.226295 GCACCGGCATTAAAGCGAC 60.226 57.895 0.00 0.00 40.72 5.19
112 113 0.579630 CGGCATTAAAGCGACGCATA 59.420 50.000 23.70 11.85 34.64 3.14
130 131 4.506255 GGCCAATAGCGCCACCCT 62.506 66.667 2.29 0.00 46.27 4.34
131 132 2.902343 GCCAATAGCGCCACCCTC 60.902 66.667 2.29 0.00 0.00 4.30
132 133 2.588877 CCAATAGCGCCACCCTCG 60.589 66.667 2.29 0.00 0.00 4.63
133 134 2.186903 CAATAGCGCCACCCTCGT 59.813 61.111 2.29 0.00 0.00 4.18
134 135 1.883084 CAATAGCGCCACCCTCGTC 60.883 63.158 2.29 0.00 0.00 4.20
135 136 3.426117 AATAGCGCCACCCTCGTCG 62.426 63.158 2.29 0.00 0.00 5.12
181 182 3.562779 TTCCCGTTCGTCCGTCTGC 62.563 63.158 0.00 0.00 0.00 4.26
191 192 2.124901 CCGTCTGCCGCCCATTAA 60.125 61.111 0.00 0.00 34.38 1.40
214 215 1.171549 TGCGCAATTGCTGAGGAACA 61.172 50.000 26.86 11.05 39.32 3.18
224 225 0.249073 CTGAGGAACATACTCCGGCG 60.249 60.000 0.00 0.00 40.75 6.46
241 242 1.144057 CGCCACCCACCTGTCTATC 59.856 63.158 0.00 0.00 0.00 2.08
252 253 2.860041 ACCTGTCTATCTACCTCCCACT 59.140 50.000 0.00 0.00 0.00 4.00
260 261 6.150809 GTCTATCTACCTCCCACTATTAACCG 59.849 46.154 0.00 0.00 0.00 4.44
280 281 4.176752 CCGCCTCTTGCCCTACCC 62.177 72.222 0.00 0.00 36.24 3.69
327 328 1.002868 GCCATAGCCGCATCCATCT 60.003 57.895 0.00 0.00 0.00 2.90
333 334 1.053264 AGCCGCATCCATCTTCCTCT 61.053 55.000 0.00 0.00 0.00 3.69
339 340 1.767088 CATCCATCTTCCTCTGCTCCA 59.233 52.381 0.00 0.00 0.00 3.86
382 383 1.305623 CCATGGCCTCCTTGAGCTT 59.694 57.895 3.32 0.00 31.33 3.74
406 407 0.743097 CATTTGGGCTAGGCTCTTGC 59.257 55.000 16.80 0.00 38.76 4.01
421 422 3.385384 TGCCTGAGCAGAGGACGG 61.385 66.667 5.23 0.00 46.52 4.79
472 473 1.144276 TGTCCGGTTTGCGAGTCAA 59.856 52.632 0.00 0.00 0.00 3.18
501 502 8.721133 TGAAGATACCCTAAGAGCACATATTA 57.279 34.615 0.00 0.00 0.00 0.98
534 535 8.099364 TCATTCAAAAGAAAGAGTATGTGGTC 57.901 34.615 0.00 0.00 0.00 4.02
580 590 4.814147 CACTCTATGCATGATACATCCGT 58.186 43.478 10.16 0.00 0.00 4.69
581 591 4.624452 CACTCTATGCATGATACATCCGTG 59.376 45.833 10.16 4.23 0.00 4.94
582 592 3.588955 TCTATGCATGATACATCCGTGC 58.411 45.455 10.16 0.00 37.70 5.34
583 593 2.259266 ATGCATGATACATCCGTGCA 57.741 45.000 16.66 16.66 45.14 4.57
584 594 2.259266 TGCATGATACATCCGTGCAT 57.741 45.000 12.59 0.00 40.26 3.96
585 595 2.574450 TGCATGATACATCCGTGCATT 58.426 42.857 12.59 0.00 40.26 3.56
586 596 3.737850 TGCATGATACATCCGTGCATTA 58.262 40.909 12.59 0.00 40.26 1.90
587 597 4.325972 TGCATGATACATCCGTGCATTAT 58.674 39.130 12.59 0.00 40.26 1.28
588 598 4.761227 TGCATGATACATCCGTGCATTATT 59.239 37.500 12.59 0.00 40.26 1.40
589 599 5.241285 TGCATGATACATCCGTGCATTATTT 59.759 36.000 12.59 0.00 40.26 1.40
590 600 5.570206 GCATGATACATCCGTGCATTATTTG 59.430 40.000 0.00 0.00 37.37 2.32
591 601 5.687770 TGATACATCCGTGCATTATTTGG 57.312 39.130 0.00 0.00 0.00 3.28
592 602 2.869233 ACATCCGTGCATTATTTGGC 57.131 45.000 0.00 0.00 0.00 4.52
593 603 2.098614 ACATCCGTGCATTATTTGGCA 58.901 42.857 0.00 0.00 37.77 4.92
594 604 2.495270 ACATCCGTGCATTATTTGGCAA 59.505 40.909 0.00 0.00 42.45 4.52
595 605 3.056250 ACATCCGTGCATTATTTGGCAAA 60.056 39.130 16.01 16.01 42.45 3.68
596 606 3.667497 TCCGTGCATTATTTGGCAAAA 57.333 38.095 17.70 1.21 42.45 2.44
597 607 3.321497 TCCGTGCATTATTTGGCAAAAC 58.679 40.909 17.70 8.37 42.45 2.43
598 608 3.062763 CCGTGCATTATTTGGCAAAACA 58.937 40.909 17.70 6.83 42.45 2.83
599 609 3.683822 CCGTGCATTATTTGGCAAAACAT 59.316 39.130 17.70 8.95 42.45 2.71
600 610 4.153835 CCGTGCATTATTTGGCAAAACATT 59.846 37.500 17.70 2.70 42.45 2.71
601 611 5.080731 CGTGCATTATTTGGCAAAACATTG 58.919 37.500 17.70 14.09 42.45 2.82
602 612 4.852650 GTGCATTATTTGGCAAAACATTGC 59.147 37.500 23.66 23.66 46.64 3.56
624 634 4.814147 CACTCTATGCATGATACATCCGT 58.186 43.478 10.16 0.00 0.00 4.69
625 635 4.624452 CACTCTATGCATGATACATCCGTG 59.376 45.833 10.16 4.23 0.00 4.94
626 636 4.281941 ACTCTATGCATGATACATCCGTGT 59.718 41.667 10.16 0.00 42.39 4.49
627 637 5.476945 ACTCTATGCATGATACATCCGTGTA 59.523 40.000 10.16 0.00 44.43 2.90
628 638 5.954335 TCTATGCATGATACATCCGTGTAG 58.046 41.667 10.16 0.00 43.62 2.74
629 639 4.607293 ATGCATGATACATCCGTGTAGT 57.393 40.909 0.00 0.00 43.62 2.73
630 640 3.716601 TGCATGATACATCCGTGTAGTG 58.283 45.455 0.00 0.00 43.62 2.74
631 641 2.476619 GCATGATACATCCGTGTAGTGC 59.523 50.000 0.00 7.26 43.62 4.40
632 642 3.716601 CATGATACATCCGTGTAGTGCA 58.283 45.455 0.00 0.00 43.62 4.57
633 643 4.309933 CATGATACATCCGTGTAGTGCAT 58.690 43.478 0.00 0.00 43.62 3.96
634 644 4.400529 TGATACATCCGTGTAGTGCATT 57.599 40.909 0.00 0.00 43.62 3.56
635 645 5.523438 TGATACATCCGTGTAGTGCATTA 57.477 39.130 0.00 0.00 43.62 1.90
636 646 6.096673 TGATACATCCGTGTAGTGCATTAT 57.903 37.500 0.00 0.00 43.62 1.28
637 647 6.521162 TGATACATCCGTGTAGTGCATTATT 58.479 36.000 0.00 0.00 43.62 1.40
638 648 6.989759 TGATACATCCGTGTAGTGCATTATTT 59.010 34.615 0.00 0.00 43.62 1.40
639 649 5.484173 ACATCCGTGTAGTGCATTATTTG 57.516 39.130 0.00 0.00 36.63 2.32
640 650 4.335315 ACATCCGTGTAGTGCATTATTTGG 59.665 41.667 0.00 0.00 36.63 3.28
641 651 2.680841 TCCGTGTAGTGCATTATTTGGC 59.319 45.455 0.00 0.00 0.00 4.52
642 652 2.421775 CCGTGTAGTGCATTATTTGGCA 59.578 45.455 0.00 0.00 37.77 4.92
643 653 3.119673 CCGTGTAGTGCATTATTTGGCAA 60.120 43.478 0.00 0.00 42.45 4.52
644 654 4.480541 CGTGTAGTGCATTATTTGGCAAA 58.519 39.130 16.01 16.01 42.45 3.68
645 655 4.920340 CGTGTAGTGCATTATTTGGCAAAA 59.080 37.500 17.70 1.21 42.45 2.44
646 656 5.164100 CGTGTAGTGCATTATTTGGCAAAAC 60.164 40.000 17.70 9.32 42.45 2.43
647 657 5.694006 GTGTAGTGCATTATTTGGCAAAACA 59.306 36.000 17.70 10.22 42.45 2.83
648 658 6.368516 GTGTAGTGCATTATTTGGCAAAACAT 59.631 34.615 17.70 8.95 42.45 2.71
649 659 6.933521 TGTAGTGCATTATTTGGCAAAACATT 59.066 30.769 17.70 9.47 42.45 2.71
650 660 6.243811 AGTGCATTATTTGGCAAAACATTG 57.756 33.333 17.70 14.09 42.45 2.82
651 661 4.852650 GTGCATTATTTGGCAAAACATTGC 59.147 37.500 23.66 23.66 46.64 3.56
675 685 4.281941 ACTCTATGCATGATACATCCGTGT 59.718 41.667 10.16 0.00 42.39 4.49
744 754 3.655486 TGCAAAATCATTCTGCAACAGG 58.345 40.909 0.00 0.00 42.84 4.00
751 761 3.146066 TCATTCTGCAACAGGTGGTTAC 58.854 45.455 0.00 0.00 37.72 2.50
790 803 2.554344 GCACCAATAGGACAACCCAGAA 60.554 50.000 0.00 0.00 38.69 3.02
912 934 2.753009 AATGACCAAGCCTGCGAGCA 62.753 55.000 0.00 0.00 34.23 4.26
1081 1118 0.110509 GCTGTCGACGACGTTCTACA 60.111 55.000 22.06 6.40 40.69 2.74
1223 1264 5.010012 AGGCAAGTTTTTCACATACTCAAGG 59.990 40.000 0.00 0.00 0.00 3.61
1254 1313 1.264288 CTGGACTTGTTCTGTTTCGGC 59.736 52.381 0.00 0.00 0.00 5.54
1287 1355 0.902531 TGAACACCTAGCTAGTGGCC 59.097 55.000 19.31 0.00 43.05 5.36
1462 1536 6.726490 ATAAAGAAGGATGTAGAAGCCGTA 57.274 37.500 0.00 0.00 0.00 4.02
1470 1544 4.260784 GGATGTAGAAGCCGTATGCAAAAG 60.261 45.833 0.00 0.00 44.83 2.27
1507 1584 4.052229 CCCGTCGTCTCCTGCGTT 62.052 66.667 0.00 0.00 0.00 4.84
1516 1593 0.976641 TCTCCTGCGTTGACATCCTT 59.023 50.000 0.00 0.00 0.00 3.36
1580 1697 0.317160 CTCGTGTGCCAAGTAGACCA 59.683 55.000 0.00 0.00 0.00 4.02
1604 1754 2.828520 TGGTTTTTGCACAGTTCCTGAA 59.171 40.909 0.00 0.00 35.18 3.02
1605 1755 3.450457 TGGTTTTTGCACAGTTCCTGAAT 59.550 39.130 0.00 0.00 35.18 2.57
1608 1758 4.998671 TTTTGCACAGTTCCTGAATCAA 57.001 36.364 0.00 0.00 35.18 2.57
1609 1759 5.534207 TTTTGCACAGTTCCTGAATCAAT 57.466 34.783 0.00 0.00 35.18 2.57
1610 1760 6.647334 TTTTGCACAGTTCCTGAATCAATA 57.353 33.333 0.00 0.00 35.18 1.90
1611 1761 5.885230 TTGCACAGTTCCTGAATCAATAG 57.115 39.130 0.00 0.00 35.18 1.73
1613 1763 4.696877 TGCACAGTTCCTGAATCAATAGTG 59.303 41.667 0.00 0.00 35.18 2.74
1615 1765 5.587844 GCACAGTTCCTGAATCAATAGTGAT 59.412 40.000 0.00 0.00 39.37 3.06
1616 1766 6.457934 GCACAGTTCCTGAATCAATAGTGATG 60.458 42.308 6.41 0.00 38.48 3.07
1617 1767 5.587844 ACAGTTCCTGAATCAATAGTGATGC 59.412 40.000 6.41 5.20 39.98 3.91
1618 1768 5.821470 CAGTTCCTGAATCAATAGTGATGCT 59.179 40.000 12.25 0.00 44.02 3.79
1619 1769 6.988580 CAGTTCCTGAATCAATAGTGATGCTA 59.011 38.462 12.25 0.00 44.02 3.49
1620 1770 7.660617 CAGTTCCTGAATCAATAGTGATGCTAT 59.339 37.037 12.25 0.00 44.02 2.97
1622 1772 8.502387 GTTCCTGAATCAATAGTGATGCTATTC 58.498 37.037 12.25 4.85 45.77 1.75
1623 1773 7.738847 TCCTGAATCAATAGTGATGCTATTCA 58.261 34.615 12.25 8.88 45.77 2.57
1624 1774 8.380867 TCCTGAATCAATAGTGATGCTATTCAT 58.619 33.333 12.25 0.00 45.77 2.57
1625 1775 8.666573 CCTGAATCAATAGTGATGCTATTCATC 58.333 37.037 12.25 2.10 45.77 2.92
1636 1786 4.277515 TGCTATTCATCACCTAGGATGC 57.722 45.455 17.98 4.83 43.44 3.91
1637 1787 3.647590 TGCTATTCATCACCTAGGATGCA 59.352 43.478 17.98 0.00 43.44 3.96
1638 1788 4.102996 TGCTATTCATCACCTAGGATGCAA 59.897 41.667 17.98 6.76 43.44 4.08
1639 1789 5.065914 GCTATTCATCACCTAGGATGCAAA 58.934 41.667 17.98 4.47 43.44 3.68
1640 1790 5.532406 GCTATTCATCACCTAGGATGCAAAA 59.468 40.000 17.98 0.85 43.44 2.44
1641 1791 6.208204 GCTATTCATCACCTAGGATGCAAAAT 59.792 38.462 17.98 8.17 43.44 1.82
1642 1792 7.391554 GCTATTCATCACCTAGGATGCAAAATA 59.608 37.037 17.98 8.81 43.44 1.40
1643 1793 9.288576 CTATTCATCACCTAGGATGCAAAATAA 57.711 33.333 17.98 0.00 43.44 1.40
1644 1794 7.572523 TTCATCACCTAGGATGCAAAATAAG 57.427 36.000 17.98 0.00 43.44 1.73
1645 1795 6.662755 TCATCACCTAGGATGCAAAATAAGT 58.337 36.000 17.98 0.00 43.44 2.24
1646 1796 6.767902 TCATCACCTAGGATGCAAAATAAGTC 59.232 38.462 17.98 0.00 43.44 3.01
1647 1797 6.061022 TCACCTAGGATGCAAAATAAGTCA 57.939 37.500 17.98 0.00 0.00 3.41
1648 1798 6.662755 TCACCTAGGATGCAAAATAAGTCAT 58.337 36.000 17.98 0.00 0.00 3.06
1649 1799 7.118723 TCACCTAGGATGCAAAATAAGTCATT 58.881 34.615 17.98 0.00 0.00 2.57
1650 1800 7.283127 TCACCTAGGATGCAAAATAAGTCATTC 59.717 37.037 17.98 0.00 0.00 2.67
1651 1801 7.284034 CACCTAGGATGCAAAATAAGTCATTCT 59.716 37.037 17.98 0.00 0.00 2.40
1652 1802 7.836183 ACCTAGGATGCAAAATAAGTCATTCTT 59.164 33.333 17.98 0.00 39.89 2.52
1653 1803 8.348507 CCTAGGATGCAAAATAAGTCATTCTTC 58.651 37.037 1.05 0.00 37.56 2.87
1654 1804 7.707624 AGGATGCAAAATAAGTCATTCTTCA 57.292 32.000 0.00 0.00 37.56 3.02
1655 1805 8.302515 AGGATGCAAAATAAGTCATTCTTCAT 57.697 30.769 0.00 0.00 37.56 2.57
1656 1806 8.411683 AGGATGCAAAATAAGTCATTCTTCATC 58.588 33.333 0.00 0.00 37.56 2.92
1657 1807 7.650903 GGATGCAAAATAAGTCATTCTTCATCC 59.349 37.037 0.00 0.00 37.76 3.51
1658 1808 6.554419 TGCAAAATAAGTCATTCTTCATCCG 58.446 36.000 0.00 0.00 37.56 4.18
1659 1809 6.374053 TGCAAAATAAGTCATTCTTCATCCGA 59.626 34.615 0.00 0.00 37.56 4.55
1660 1810 6.909357 GCAAAATAAGTCATTCTTCATCCGAG 59.091 38.462 0.00 0.00 37.56 4.63
1661 1811 7.412853 CAAAATAAGTCATTCTTCATCCGAGG 58.587 38.462 0.00 0.00 37.56 4.63
1662 1812 5.878406 ATAAGTCATTCTTCATCCGAGGT 57.122 39.130 0.00 0.00 37.56 3.85
1663 1813 6.978674 ATAAGTCATTCTTCATCCGAGGTA 57.021 37.500 0.00 0.00 37.56 3.08
1664 1814 5.677319 AAGTCATTCTTCATCCGAGGTAA 57.323 39.130 0.00 0.00 0.00 2.85
1665 1815 5.878406 AGTCATTCTTCATCCGAGGTAAT 57.122 39.130 0.00 0.00 0.00 1.89
1666 1816 5.848406 AGTCATTCTTCATCCGAGGTAATC 58.152 41.667 0.00 0.00 0.00 1.75
1667 1817 5.600484 AGTCATTCTTCATCCGAGGTAATCT 59.400 40.000 0.00 0.00 0.00 2.40
1668 1818 6.098982 AGTCATTCTTCATCCGAGGTAATCTT 59.901 38.462 0.00 0.00 0.00 2.40
1669 1819 7.287927 AGTCATTCTTCATCCGAGGTAATCTTA 59.712 37.037 0.00 0.00 0.00 2.10
1670 1820 8.091449 GTCATTCTTCATCCGAGGTAATCTTAT 58.909 37.037 0.00 0.00 0.00 1.73
1671 1821 8.090831 TCATTCTTCATCCGAGGTAATCTTATG 58.909 37.037 0.00 0.00 0.00 1.90
1672 1822 7.597288 TTCTTCATCCGAGGTAATCTTATGA 57.403 36.000 0.00 0.00 0.00 2.15
1673 1823 7.782897 TCTTCATCCGAGGTAATCTTATGAT 57.217 36.000 0.00 0.00 30.98 2.45
1674 1824 7.831753 TCTTCATCCGAGGTAATCTTATGATC 58.168 38.462 0.00 0.00 30.98 2.92
1675 1825 7.451566 TCTTCATCCGAGGTAATCTTATGATCA 59.548 37.037 0.00 0.00 30.98 2.92
1676 1826 6.925211 TCATCCGAGGTAATCTTATGATCAC 58.075 40.000 0.00 0.00 31.51 3.06
1677 1827 6.721668 TCATCCGAGGTAATCTTATGATCACT 59.278 38.462 0.00 0.00 31.51 3.41
1678 1828 6.978674 TCCGAGGTAATCTTATGATCACTT 57.021 37.500 0.00 0.00 31.51 3.16
1679 1829 6.982852 TCCGAGGTAATCTTATGATCACTTC 58.017 40.000 0.00 0.00 31.51 3.01
1680 1830 6.549736 TCCGAGGTAATCTTATGATCACTTCA 59.450 38.462 0.00 0.00 39.12 3.02
1681 1831 7.233553 TCCGAGGTAATCTTATGATCACTTCAT 59.766 37.037 0.00 0.00 46.86 2.57
1682 1832 8.523658 CCGAGGTAATCTTATGATCACTTCATA 58.476 37.037 0.00 0.00 43.43 2.15
1785 1963 9.598517 ACACTATGTTTTCATGTTTGTGATTTT 57.401 25.926 0.00 0.00 41.09 1.82
1812 1990 9.872757 ACATAACATAAAATATTTCTTACGGCG 57.127 29.630 4.80 4.80 0.00 6.46
1831 2009 7.515957 ACGGCGATTATATATTTTCTTACGG 57.484 36.000 16.62 0.00 0.00 4.02
1832 2010 7.092716 ACGGCGATTATATATTTTCTTACGGT 58.907 34.615 16.62 0.00 0.00 4.83
1833 2011 7.274250 ACGGCGATTATATATTTTCTTACGGTC 59.726 37.037 16.62 0.00 0.00 4.79
1834 2012 7.487189 CGGCGATTATATATTTTCTTACGGTCT 59.513 37.037 0.00 0.00 0.00 3.85
1835 2013 8.805688 GGCGATTATATATTTTCTTACGGTCTC 58.194 37.037 0.00 0.00 0.00 3.36
1836 2014 9.570488 GCGATTATATATTTTCTTACGGTCTCT 57.430 33.333 0.00 0.00 0.00 3.10
1844 2022 7.719778 ATTTTCTTACGGTCTCTTTTTACGT 57.280 32.000 0.00 0.00 41.10 3.57
1845 2023 6.753897 TTTCTTACGGTCTCTTTTTACGTC 57.246 37.500 0.00 0.00 38.79 4.34
1846 2024 5.437289 TCTTACGGTCTCTTTTTACGTCA 57.563 39.130 0.00 0.00 38.79 4.35
1847 2025 5.830912 TCTTACGGTCTCTTTTTACGTCAA 58.169 37.500 0.00 0.00 38.79 3.18
1848 2026 6.272318 TCTTACGGTCTCTTTTTACGTCAAA 58.728 36.000 0.00 0.00 38.79 2.69
1849 2027 6.756074 TCTTACGGTCTCTTTTTACGTCAAAA 59.244 34.615 7.38 7.38 38.79 2.44
1850 2028 5.799681 ACGGTCTCTTTTTACGTCAAAAA 57.200 34.783 8.82 10.76 42.47 1.94
1851 2029 6.367686 ACGGTCTCTTTTTACGTCAAAAAT 57.632 33.333 8.82 0.00 43.42 1.82
1852 2030 7.481275 ACGGTCTCTTTTTACGTCAAAAATA 57.519 32.000 8.82 5.45 43.42 1.40
1853 2031 7.918643 ACGGTCTCTTTTTACGTCAAAAATAA 58.081 30.769 8.82 4.55 43.42 1.40
1854 2032 8.066000 ACGGTCTCTTTTTACGTCAAAAATAAG 58.934 33.333 8.82 11.35 43.42 1.73
1855 2033 8.277713 CGGTCTCTTTTTACGTCAAAAATAAGA 58.722 33.333 8.82 12.82 43.42 2.10
1856 2034 9.378597 GGTCTCTTTTTACGTCAAAAATAAGAC 57.621 33.333 24.43 24.43 45.22 3.01
1857 2035 9.925268 GTCTCTTTTTACGTCAAAAATAAGACA 57.075 29.630 25.57 10.26 45.24 3.41
1893 2071 7.136289 ACGTAAAATTGTAGTGTATTGGTGG 57.864 36.000 0.00 0.00 0.00 4.61
1894 2072 6.711645 ACGTAAAATTGTAGTGTATTGGTGGT 59.288 34.615 0.00 0.00 0.00 4.16
1895 2073 7.877097 ACGTAAAATTGTAGTGTATTGGTGGTA 59.123 33.333 0.00 0.00 0.00 3.25
1896 2074 8.719648 CGTAAAATTGTAGTGTATTGGTGGTAA 58.280 33.333 0.00 0.00 0.00 2.85
2215 2393 5.896073 AGAATAACTATTCCTCACCCAGG 57.104 43.478 5.95 0.00 42.29 4.45
2216 2394 4.660771 AGAATAACTATTCCTCACCCAGGG 59.339 45.833 2.85 2.85 43.67 4.45
2217 2395 2.361085 AACTATTCCTCACCCAGGGT 57.639 50.000 4.76 4.76 43.67 4.34
2218 2396 5.687706 GAATAACTATTCCTCACCCAGGGTG 60.688 48.000 31.06 31.06 43.50 4.61
2219 2397 7.827072 GAATAACTATTCCTCACCCAGGGTGA 61.827 46.154 35.32 35.32 45.54 4.02
2220 2398 9.736671 GAATAACTATTCCTCACCCAGGGTGAC 62.737 48.148 34.62 17.53 44.45 3.67
2229 2407 1.138266 ACCCAGGGTGACGAATAATCG 59.862 52.381 11.70 0.00 44.49 3.34
2322 2500 1.151450 CCAACCAGAACCTGCCTGT 59.849 57.895 0.00 0.00 0.00 4.00
2335 2513 2.429930 CCTGTGCCGTTCTTGGGA 59.570 61.111 0.00 0.00 0.00 4.37
2350 2528 4.162690 GGAGTCGCCGGCCTCAAT 62.163 66.667 27.26 10.72 0.00 2.57
2363 2541 1.740380 GCCTCAATGCTAGCTTCGTCA 60.740 52.381 17.23 0.00 0.00 4.35
2451 2629 2.156098 AGAACTTCAGGGGCAGGCA 61.156 57.895 0.00 0.00 0.00 4.75
2485 2663 0.315886 ACATCAACACGACCTACGCA 59.684 50.000 0.00 0.00 46.94 5.24
2494 2672 0.108992 CGACCTACGCAACCAAGCTA 60.109 55.000 0.00 0.00 34.51 3.32
2557 2742 4.379143 TCGACGACGACACAGCGG 62.379 66.667 5.75 0.00 43.81 5.52
2683 2868 0.250858 CTGTGCCACCAAGGACATCA 60.251 55.000 0.00 0.00 41.22 3.07
2689 2874 3.245229 TGCCACCAAGGACATCATTAAGT 60.245 43.478 0.00 0.00 41.22 2.24
2704 2889 6.054860 TCATTAAGTCCTTTGCTTCTAGCT 57.945 37.500 0.00 0.00 42.97 3.32
2722 2907 0.178068 CTAGGCCGCCTTCTTTAGCA 59.822 55.000 19.35 0.00 34.61 3.49
2754 2940 1.548081 CATGGTGAAGATGGCCAACA 58.452 50.000 10.96 5.27 35.74 3.33
2839 3030 5.316158 AGAATCACCATTTAGAGGATGGG 57.684 43.478 7.91 0.00 46.69 4.00
2841 3032 1.494721 TCACCATTTAGAGGATGGGGC 59.505 52.381 7.91 0.00 45.74 5.80
2842 3033 0.474184 ACCATTTAGAGGATGGGGCG 59.526 55.000 7.91 0.00 46.69 6.13
2843 3034 0.474184 CCATTTAGAGGATGGGGCGT 59.526 55.000 0.00 0.00 40.30 5.68
2844 3035 1.543429 CCATTTAGAGGATGGGGCGTC 60.543 57.143 0.00 0.00 40.30 5.19
2845 3036 0.393077 ATTTAGAGGATGGGGCGTCG 59.607 55.000 0.00 0.00 0.00 5.12
2846 3037 0.685131 TTTAGAGGATGGGGCGTCGA 60.685 55.000 0.00 0.00 0.00 4.20
2847 3038 1.389609 TTAGAGGATGGGGCGTCGAC 61.390 60.000 5.18 5.18 0.00 4.20
2848 3039 4.222847 GAGGATGGGGCGTCGACC 62.223 72.222 9.26 9.26 0.00 4.79
2872 3063 3.060615 CTGGGCAGCTGAGGTTGC 61.061 66.667 20.43 0.23 46.58 4.17
2873 3064 3.564345 CTGGGCAGCTGAGGTTGCT 62.564 63.158 20.43 0.00 46.51 3.91
2878 3069 2.033757 AGCTGAGGTTGCTGCCAG 59.966 61.111 0.00 0.00 39.56 4.85
2879 3070 2.282040 GCTGAGGTTGCTGCCAGT 60.282 61.111 0.00 0.00 0.00 4.00
2880 3071 2.331132 GCTGAGGTTGCTGCCAGTC 61.331 63.158 0.00 0.00 0.00 3.51
2881 3072 1.673665 CTGAGGTTGCTGCCAGTCC 60.674 63.158 0.00 0.00 0.00 3.85
2882 3073 2.401699 CTGAGGTTGCTGCCAGTCCA 62.402 60.000 0.00 0.00 0.00 4.02
2883 3074 1.001641 GAGGTTGCTGCCAGTCCAT 60.002 57.895 0.00 0.00 0.00 3.41
2884 3075 1.001641 AGGTTGCTGCCAGTCCATC 60.002 57.895 0.00 0.00 0.00 3.51
2885 3076 2.048603 GGTTGCTGCCAGTCCATCC 61.049 63.158 0.00 0.00 0.00 3.51
2886 3077 2.046023 TTGCTGCCAGTCCATCCG 60.046 61.111 0.00 0.00 0.00 4.18
2887 3078 2.592032 TTGCTGCCAGTCCATCCGA 61.592 57.895 0.00 0.00 0.00 4.55
2888 3079 2.202987 GCTGCCAGTCCATCCGAG 60.203 66.667 0.00 0.00 0.00 4.63
2889 3080 3.023949 GCTGCCAGTCCATCCGAGT 62.024 63.158 0.00 0.00 0.00 4.18
2890 3081 1.599047 CTGCCAGTCCATCCGAGTT 59.401 57.895 0.00 0.00 0.00 3.01
2891 3082 0.036010 CTGCCAGTCCATCCGAGTTT 60.036 55.000 0.00 0.00 0.00 2.66
2892 3083 1.207089 CTGCCAGTCCATCCGAGTTTA 59.793 52.381 0.00 0.00 0.00 2.01
2893 3084 1.626321 TGCCAGTCCATCCGAGTTTAA 59.374 47.619 0.00 0.00 0.00 1.52
2894 3085 2.280628 GCCAGTCCATCCGAGTTTAAG 58.719 52.381 0.00 0.00 0.00 1.85
2895 3086 2.354805 GCCAGTCCATCCGAGTTTAAGT 60.355 50.000 0.00 0.00 0.00 2.24
2896 3087 3.522553 CCAGTCCATCCGAGTTTAAGTC 58.477 50.000 0.00 0.00 0.00 3.01
2897 3088 3.522553 CAGTCCATCCGAGTTTAAGTCC 58.477 50.000 0.00 0.00 0.00 3.85
2898 3089 2.500504 AGTCCATCCGAGTTTAAGTCCC 59.499 50.000 0.00 0.00 0.00 4.46
2899 3090 1.479323 TCCATCCGAGTTTAAGTCCCG 59.521 52.381 0.00 0.00 0.00 5.14
2900 3091 1.472728 CCATCCGAGTTTAAGTCCCGG 60.473 57.143 0.00 0.00 41.36 5.73
2901 3092 0.177373 ATCCGAGTTTAAGTCCCGGC 59.823 55.000 0.00 0.00 39.96 6.13
2902 3093 0.901580 TCCGAGTTTAAGTCCCGGCT 60.902 55.000 0.00 0.00 39.96 5.52
2903 3094 0.036671 CCGAGTTTAAGTCCCGGCTT 60.037 55.000 0.00 0.00 33.47 4.35
2904 3095 1.076332 CGAGTTTAAGTCCCGGCTTG 58.924 55.000 0.00 0.00 0.00 4.01
2905 3096 1.450025 GAGTTTAAGTCCCGGCTTGG 58.550 55.000 0.00 0.00 37.55 3.61
2906 3097 1.002773 GAGTTTAAGTCCCGGCTTGGA 59.997 52.381 0.00 0.00 42.00 3.53
2918 3109 3.414700 CTTGGACGCGTGGTGCTC 61.415 66.667 20.70 0.00 43.27 4.26
2931 3122 2.738521 TGCTCGCGCAGTTTCTCC 60.739 61.111 8.75 0.00 42.25 3.71
2932 3123 2.433318 GCTCGCGCAGTTTCTCCT 60.433 61.111 8.75 0.00 35.78 3.69
2933 3124 1.153823 GCTCGCGCAGTTTCTCCTA 60.154 57.895 8.75 0.00 35.78 2.94
2934 3125 0.528684 GCTCGCGCAGTTTCTCCTAT 60.529 55.000 8.75 0.00 35.78 2.57
2935 3126 1.482278 CTCGCGCAGTTTCTCCTATC 58.518 55.000 8.75 0.00 0.00 2.08
2936 3127 0.815095 TCGCGCAGTTTCTCCTATCA 59.185 50.000 8.75 0.00 0.00 2.15
2937 3128 1.203758 TCGCGCAGTTTCTCCTATCAA 59.796 47.619 8.75 0.00 0.00 2.57
2938 3129 1.590238 CGCGCAGTTTCTCCTATCAAG 59.410 52.381 8.75 0.00 0.00 3.02
2939 3130 2.735444 CGCGCAGTTTCTCCTATCAAGA 60.735 50.000 8.75 0.00 0.00 3.02
2940 3131 3.262420 GCGCAGTTTCTCCTATCAAGAA 58.738 45.455 0.30 0.00 0.00 2.52
2941 3132 3.684788 GCGCAGTTTCTCCTATCAAGAAA 59.315 43.478 0.30 0.00 39.72 2.52
2942 3133 4.154195 GCGCAGTTTCTCCTATCAAGAAAA 59.846 41.667 0.30 0.00 42.63 2.29
2943 3134 5.672321 GCGCAGTTTCTCCTATCAAGAAAAG 60.672 44.000 0.30 0.00 42.63 2.27
2944 3135 5.635866 GCAGTTTCTCCTATCAAGAAAAGC 58.364 41.667 0.24 4.75 42.63 3.51
2945 3136 5.392487 GCAGTTTCTCCTATCAAGAAAAGCC 60.392 44.000 10.67 0.00 42.63 4.35
2946 3137 5.707298 CAGTTTCTCCTATCAAGAAAAGCCA 59.293 40.000 0.24 0.00 42.63 4.75
2947 3138 6.207417 CAGTTTCTCCTATCAAGAAAAGCCAA 59.793 38.462 0.24 0.00 42.63 4.52
2948 3139 6.432472 AGTTTCTCCTATCAAGAAAAGCCAAG 59.568 38.462 0.24 0.00 42.63 3.61
2949 3140 4.848357 TCTCCTATCAAGAAAAGCCAAGG 58.152 43.478 0.00 0.00 0.00 3.61
2950 3141 4.536090 TCTCCTATCAAGAAAAGCCAAGGA 59.464 41.667 0.00 0.00 0.00 3.36
2951 3142 4.848357 TCCTATCAAGAAAAGCCAAGGAG 58.152 43.478 0.00 0.00 0.00 3.69
2952 3143 3.950395 CCTATCAAGAAAAGCCAAGGAGG 59.050 47.826 0.00 0.00 41.84 4.30
2953 3144 2.292828 TCAAGAAAAGCCAAGGAGGG 57.707 50.000 0.00 0.00 38.09 4.30
2960 3151 3.416351 GCCAAGGAGGGTTAGCCT 58.584 61.111 1.19 1.19 38.09 4.58
2961 3152 1.691823 GCCAAGGAGGGTTAGCCTT 59.308 57.895 3.86 0.00 45.07 4.35
2964 3155 2.398919 AAGGAGGGTTAGCCTTGGG 58.601 57.895 3.86 0.00 42.67 4.12
2965 3156 0.477795 AAGGAGGGTTAGCCTTGGGT 60.478 55.000 3.86 0.00 42.67 4.51
2966 3157 0.477795 AGGAGGGTTAGCCTTGGGTT 60.478 55.000 3.86 0.00 34.45 4.11
2967 3158 0.323451 GGAGGGTTAGCCTTGGGTTG 60.323 60.000 3.86 0.00 34.45 3.77
2968 3159 0.323451 GAGGGTTAGCCTTGGGTTGG 60.323 60.000 3.86 0.00 34.45 3.77
2969 3160 1.071909 AGGGTTAGCCTTGGGTTGGT 61.072 55.000 0.00 0.00 34.45 3.67
2970 3161 0.611062 GGGTTAGCCTTGGGTTGGTC 60.611 60.000 0.00 0.00 34.45 4.02
2971 3162 0.404426 GGTTAGCCTTGGGTTGGTCT 59.596 55.000 0.00 0.00 0.00 3.85
2972 3163 1.613520 GGTTAGCCTTGGGTTGGTCTC 60.614 57.143 0.00 0.00 0.00 3.36
2973 3164 1.073284 GTTAGCCTTGGGTTGGTCTCA 59.927 52.381 0.00 0.00 0.00 3.27
2974 3165 1.668826 TAGCCTTGGGTTGGTCTCAT 58.331 50.000 0.00 0.00 0.00 2.90
2975 3166 0.779997 AGCCTTGGGTTGGTCTCATT 59.220 50.000 0.00 0.00 0.00 2.57
2976 3167 1.147817 AGCCTTGGGTTGGTCTCATTT 59.852 47.619 0.00 0.00 0.00 2.32
2977 3168 1.970640 GCCTTGGGTTGGTCTCATTTT 59.029 47.619 0.00 0.00 0.00 1.82
2978 3169 2.368548 GCCTTGGGTTGGTCTCATTTTT 59.631 45.455 0.00 0.00 0.00 1.94
3024 3215 3.345808 AAATGACAGCGCGCGTGT 61.346 55.556 32.35 30.31 0.00 4.49
3084 3277 1.687660 TGCTGCACAATGAACCATGTT 59.312 42.857 0.00 0.00 0.00 2.71
3119 3312 2.236395 GCGGTGCCACCTATATATTCCT 59.764 50.000 12.94 0.00 35.66 3.36
3307 3501 5.323371 TGTCAAGTTTCCCAAAGTTTCAG 57.677 39.130 0.00 0.00 31.88 3.02
3350 3544 5.258456 TCACTAGAACGTTCACTTCAGTT 57.742 39.130 28.78 9.17 0.00 3.16
3361 3555 4.782019 TCACTTCAGTTGCACACTTTTT 57.218 36.364 0.00 0.00 30.92 1.94
3395 3589 7.480542 CCATATCTGTTCGAAAAAGGTTTTACG 59.519 37.037 0.00 0.00 0.00 3.18
3497 3881 2.092681 TCGAGACGTGTCGTGTATGTAC 59.907 50.000 30.67 0.00 41.37 2.90
3498 3882 2.159801 CGAGACGTGTCGTGTATGTACA 60.160 50.000 25.31 0.00 41.37 2.90
3501 3885 3.120408 AGACGTGTCGTGTATGTACAGAC 60.120 47.826 13.72 13.72 41.37 3.51
3506 3890 8.463119 ACGTGTCGTGTATGTACAGACTGTAC 62.463 46.154 30.66 30.66 44.85 2.90
3570 3957 1.363443 GCATGTGGGGTGTGTGTTG 59.637 57.895 0.00 0.00 0.00 3.33
3593 3981 4.330944 ACATCTGTTCTGGTTTACGACA 57.669 40.909 0.00 0.00 0.00 4.35
3620 4008 5.643379 TCCATGTAATTGAGGCTCAAAAC 57.357 39.130 31.57 28.70 40.12 2.43
3621 4009 5.076182 TCCATGTAATTGAGGCTCAAAACA 58.924 37.500 32.82 32.82 40.12 2.83
3622 4010 5.538053 TCCATGTAATTGAGGCTCAAAACAA 59.462 36.000 33.63 23.01 40.12 2.83
3655 4043 5.708736 TTTAGCCAGATTTATGACAGGGA 57.291 39.130 0.00 0.00 0.00 4.20
3663 4051 4.282195 AGATTTATGACAGGGATCGTCCTC 59.718 45.833 4.41 0.00 36.57 3.71
3714 4103 6.207221 TGGCACATCATAACCTTGCTATATTG 59.793 38.462 0.00 0.00 33.55 1.90
3721 4110 9.632638 ATCATAACCTTGCTATATTGAACTTGT 57.367 29.630 0.00 0.00 0.00 3.16
3725 4114 7.715265 ACCTTGCTATATTGAACTTGTATCG 57.285 36.000 0.00 0.00 0.00 2.92
3797 4186 9.905713 AACTGAATGATAAGATTACAAGGCTAA 57.094 29.630 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 1.276989 TCATGTCTGCACTGATCAGCA 59.723 47.619 22.83 15.45 39.25 4.41
10 11 5.106038 GGAAAAATCATGTCTGCACTGATCA 60.106 40.000 0.00 0.00 0.00 2.92
18 19 1.202114 TGCGGGAAAAATCATGTCTGC 59.798 47.619 0.00 0.00 0.00 4.26
40 41 3.181521 GCCGGCATGAATTTGTTTTTAGC 60.182 43.478 24.80 0.00 0.00 3.09
41 42 4.244862 AGCCGGCATGAATTTGTTTTTAG 58.755 39.130 31.54 0.00 0.00 1.85
42 43 4.241681 GAGCCGGCATGAATTTGTTTTTA 58.758 39.130 31.54 0.00 0.00 1.52
50 51 1.099879 GCTCTGAGCCGGCATGAATT 61.100 55.000 31.54 6.18 34.48 2.17
84 85 2.206515 CTTTAATGCCGGTGCGCCAA 62.207 55.000 18.18 0.87 41.78 4.52
91 92 2.746803 GCGTCGCTTTAATGCCGGT 61.747 57.895 10.68 0.00 0.00 5.28
128 129 4.796231 CACCGGGAAGCGACGAGG 62.796 72.222 6.32 0.00 0.00 4.63
181 182 4.707988 CGCATGTTTAATGGGCGG 57.292 55.556 0.00 0.00 43.63 6.13
224 225 1.413077 GTAGATAGACAGGTGGGTGGC 59.587 57.143 0.00 0.00 0.00 5.01
232 233 3.603965 AGTGGGAGGTAGATAGACAGG 57.396 52.381 0.00 0.00 0.00 4.00
241 242 2.036862 GGCGGTTAATAGTGGGAGGTAG 59.963 54.545 0.00 0.00 0.00 3.18
252 253 1.339644 AAGAGGCGGGGCGGTTAATA 61.340 55.000 0.00 0.00 0.00 0.98
280 281 2.166664 AGAGTTTAAGTAGCCGGCTGAG 59.833 50.000 38.98 0.00 0.00 3.35
327 328 2.503356 GAGGAGAAATGGAGCAGAGGAA 59.497 50.000 0.00 0.00 0.00 3.36
333 334 2.224843 TGCAAAGAGGAGAAATGGAGCA 60.225 45.455 0.00 0.00 0.00 4.26
339 340 3.416156 GAGTGGTGCAAAGAGGAGAAAT 58.584 45.455 0.00 0.00 0.00 2.17
382 383 2.041620 AGAGCCTAGCCCAAATGTTTGA 59.958 45.455 7.04 0.00 40.55 2.69
406 407 0.754957 ATCTCCGTCCTCTGCTCAGG 60.755 60.000 0.00 0.00 34.40 3.86
407 408 0.385029 CATCTCCGTCCTCTGCTCAG 59.615 60.000 0.00 0.00 0.00 3.35
408 409 1.039785 CCATCTCCGTCCTCTGCTCA 61.040 60.000 0.00 0.00 0.00 4.26
421 422 1.202580 AGTAGCAATGACGGCCATCTC 60.203 52.381 2.24 0.00 33.53 2.75
459 460 1.305201 TCAACCTTGACTCGCAAACC 58.695 50.000 0.00 0.00 35.74 3.27
467 468 6.023603 TCTTAGGGTATCTTCAACCTTGACT 58.976 40.000 0.00 0.00 36.83 3.41
472 473 4.162509 GTGCTCTTAGGGTATCTTCAACCT 59.837 45.833 0.00 0.00 37.18 3.50
509 510 7.939039 AGACCACATACTCTTTCTTTTGAATGA 59.061 33.333 0.00 0.00 39.36 2.57
534 535 7.059945 GTGCATTGAAGTCAACGAAATTCTAAG 59.940 37.037 0.00 0.00 38.86 2.18
578 588 4.925061 ATGTTTTGCCAAATAATGCACG 57.075 36.364 0.00 0.00 37.18 5.34
601 611 9.855661 TACACGGATGTATCATGCATAGAGTGC 62.856 44.444 13.68 0.00 46.20 4.40
602 612 4.624452 CACGGATGTATCATGCATAGAGTG 59.376 45.833 0.00 0.00 0.00 3.51
603 613 4.281941 ACACGGATGTATCATGCATAGAGT 59.718 41.667 0.00 0.00 37.26 3.24
604 614 4.814147 ACACGGATGTATCATGCATAGAG 58.186 43.478 0.00 0.00 37.26 2.43
605 615 4.871933 ACACGGATGTATCATGCATAGA 57.128 40.909 0.00 0.00 37.26 1.98
606 616 5.574443 CACTACACGGATGTATCATGCATAG 59.426 44.000 0.00 0.00 40.57 2.23
607 617 5.469479 CACTACACGGATGTATCATGCATA 58.531 41.667 0.00 0.00 40.57 3.14
608 618 4.309933 CACTACACGGATGTATCATGCAT 58.690 43.478 0.00 0.00 40.57 3.96
609 619 3.716601 CACTACACGGATGTATCATGCA 58.283 45.455 0.00 0.00 40.57 3.96
610 620 2.476619 GCACTACACGGATGTATCATGC 59.523 50.000 0.00 0.00 40.57 4.06
611 621 3.716601 TGCACTACACGGATGTATCATG 58.283 45.455 0.00 0.00 40.57 3.07
612 622 4.607293 ATGCACTACACGGATGTATCAT 57.393 40.909 0.00 0.00 40.57 2.45
613 623 4.400529 AATGCACTACACGGATGTATCA 57.599 40.909 0.00 0.00 40.57 2.15
614 624 7.290842 CAAATAATGCACTACACGGATGTATC 58.709 38.462 0.00 0.00 40.57 2.24
615 625 6.204688 CCAAATAATGCACTACACGGATGTAT 59.795 38.462 0.00 0.00 40.57 2.29
616 626 5.525745 CCAAATAATGCACTACACGGATGTA 59.474 40.000 0.00 0.00 40.48 2.29
617 627 4.335315 CCAAATAATGCACTACACGGATGT 59.665 41.667 0.00 0.00 43.30 3.06
618 628 4.789481 GCCAAATAATGCACTACACGGATG 60.789 45.833 0.00 0.00 0.00 3.51
619 629 3.315191 GCCAAATAATGCACTACACGGAT 59.685 43.478 0.00 0.00 0.00 4.18
620 630 2.680841 GCCAAATAATGCACTACACGGA 59.319 45.455 0.00 0.00 0.00 4.69
621 631 2.421775 TGCCAAATAATGCACTACACGG 59.578 45.455 0.00 0.00 31.31 4.94
622 632 3.755965 TGCCAAATAATGCACTACACG 57.244 42.857 0.00 0.00 31.31 4.49
623 633 5.694006 TGTTTTGCCAAATAATGCACTACAC 59.306 36.000 0.00 0.00 37.18 2.90
624 634 5.847304 TGTTTTGCCAAATAATGCACTACA 58.153 33.333 0.00 0.00 37.18 2.74
625 635 6.966435 ATGTTTTGCCAAATAATGCACTAC 57.034 33.333 0.00 0.00 37.18 2.73
626 636 7.361889 CAATGTTTTGCCAAATAATGCACTA 57.638 32.000 0.00 0.00 37.18 2.74
627 637 6.243811 CAATGTTTTGCCAAATAATGCACT 57.756 33.333 0.00 0.00 37.18 4.40
650 660 9.855661 TACACGGATGTATCATGCATAGAGTGC 62.856 44.444 13.68 0.00 46.20 4.40
651 661 4.624452 CACGGATGTATCATGCATAGAGTG 59.376 45.833 0.00 0.00 0.00 3.51
652 662 4.281941 ACACGGATGTATCATGCATAGAGT 59.718 41.667 0.00 0.00 37.26 3.24
653 663 4.814147 ACACGGATGTATCATGCATAGAG 58.186 43.478 0.00 0.00 37.26 2.43
654 664 4.871933 ACACGGATGTATCATGCATAGA 57.128 40.909 0.00 0.00 37.26 1.98
665 675 7.094334 TGTTTTGCCAAATAATACACGGATGTA 60.094 33.333 0.00 0.00 45.37 2.29
666 676 5.906113 TTTGCCAAATAATACACGGATGT 57.094 34.783 0.00 0.00 43.30 3.06
667 677 6.096036 TGTTTTGCCAAATAATACACGGATG 58.904 36.000 0.00 0.00 0.00 3.51
668 678 6.274157 TGTTTTGCCAAATAATACACGGAT 57.726 33.333 0.00 0.00 0.00 4.18
669 679 5.707242 TGTTTTGCCAAATAATACACGGA 57.293 34.783 0.00 0.00 0.00 4.69
670 680 5.290643 CCATGTTTTGCCAAATAATACACGG 59.709 40.000 0.00 0.00 0.00 4.94
675 685 4.874966 GCAGCCATGTTTTGCCAAATAATA 59.125 37.500 0.00 0.00 31.79 0.98
811 824 0.752009 TGCTAGCCGTTCGATCTCCT 60.752 55.000 13.29 0.00 0.00 3.69
1081 1118 2.414750 CCAAAGGGCACGACTTGTT 58.585 52.632 0.00 0.00 0.00 2.83
1223 1264 0.249911 CAAGTCCAGCCCGGCTATAC 60.250 60.000 12.83 13.08 36.40 1.47
1287 1355 4.530094 ACATAAATATGCACGGTCGTTG 57.470 40.909 0.00 0.00 37.19 4.10
1402 1476 4.457496 CCACGCAGCGATCCCACT 62.457 66.667 24.65 0.00 0.00 4.00
1462 1536 0.893270 TGCTGTACGGCCTTTTGCAT 60.893 50.000 23.70 0.00 43.89 3.96
1470 1544 2.554272 CGTTGTTGCTGTACGGCC 59.446 61.111 23.70 9.96 0.00 6.13
1506 1583 2.032634 GCGACGGCAAGGATGTCAA 61.033 57.895 0.00 0.00 39.62 3.18
1507 1584 2.434185 GCGACGGCAAGGATGTCA 60.434 61.111 0.00 0.00 39.62 3.58
1580 1697 2.831526 AGGAACTGTGCAAAAACCAACT 59.168 40.909 0.00 0.00 37.18 3.16
1589 1706 8.229970 ATCACTATTGATTCAGGAACTGTGCAA 61.230 37.037 0.00 0.00 45.52 4.08
1615 1765 3.647590 TGCATCCTAGGTGATGAATAGCA 59.352 43.478 13.40 6.73 43.94 3.49
1616 1766 4.277515 TGCATCCTAGGTGATGAATAGC 57.722 45.455 13.40 4.65 43.94 2.97
1617 1767 7.756395 ATTTTGCATCCTAGGTGATGAATAG 57.244 36.000 13.40 0.00 43.94 1.73
1618 1768 9.288576 CTTATTTTGCATCCTAGGTGATGAATA 57.711 33.333 13.40 6.76 43.94 1.75
1619 1769 7.781693 ACTTATTTTGCATCCTAGGTGATGAAT 59.218 33.333 13.40 7.53 43.94 2.57
1620 1770 7.118723 ACTTATTTTGCATCCTAGGTGATGAA 58.881 34.615 13.40 1.13 43.94 2.57
1621 1771 6.662755 ACTTATTTTGCATCCTAGGTGATGA 58.337 36.000 13.40 0.00 43.94 2.92
1622 1772 6.543465 TGACTTATTTTGCATCCTAGGTGATG 59.457 38.462 9.08 7.39 44.02 3.07
1623 1773 6.662755 TGACTTATTTTGCATCCTAGGTGAT 58.337 36.000 9.08 0.00 0.00 3.06
1624 1774 6.061022 TGACTTATTTTGCATCCTAGGTGA 57.939 37.500 9.08 0.00 0.00 4.02
1625 1775 6.949352 ATGACTTATTTTGCATCCTAGGTG 57.051 37.500 9.08 7.78 0.00 4.00
1626 1776 7.349598 AGAATGACTTATTTTGCATCCTAGGT 58.650 34.615 9.08 0.00 0.00 3.08
1627 1777 7.814264 AGAATGACTTATTTTGCATCCTAGG 57.186 36.000 0.82 0.82 0.00 3.02
1628 1778 8.896744 TGAAGAATGACTTATTTTGCATCCTAG 58.103 33.333 0.00 0.00 39.13 3.02
1629 1779 8.806429 TGAAGAATGACTTATTTTGCATCCTA 57.194 30.769 0.00 0.00 39.13 2.94
1630 1780 7.707624 TGAAGAATGACTTATTTTGCATCCT 57.292 32.000 0.00 0.00 39.13 3.24
1631 1781 7.650903 GGATGAAGAATGACTTATTTTGCATCC 59.349 37.037 12.01 12.01 39.79 3.51
1632 1782 7.377928 CGGATGAAGAATGACTTATTTTGCATC 59.622 37.037 0.00 0.00 39.13 3.91
1633 1783 7.067372 TCGGATGAAGAATGACTTATTTTGCAT 59.933 33.333 0.00 0.00 39.13 3.96
1634 1784 6.374053 TCGGATGAAGAATGACTTATTTTGCA 59.626 34.615 0.00 0.00 39.13 4.08
1635 1785 6.785191 TCGGATGAAGAATGACTTATTTTGC 58.215 36.000 0.00 0.00 39.13 3.68
1636 1786 7.066284 ACCTCGGATGAAGAATGACTTATTTTG 59.934 37.037 0.00 0.00 39.13 2.44
1637 1787 7.112779 ACCTCGGATGAAGAATGACTTATTTT 58.887 34.615 0.00 0.00 39.13 1.82
1638 1788 6.653989 ACCTCGGATGAAGAATGACTTATTT 58.346 36.000 0.00 0.00 39.13 1.40
1639 1789 6.240549 ACCTCGGATGAAGAATGACTTATT 57.759 37.500 0.00 0.00 39.13 1.40
1640 1790 5.878406 ACCTCGGATGAAGAATGACTTAT 57.122 39.130 0.00 0.00 39.13 1.73
1641 1791 6.785337 TTACCTCGGATGAAGAATGACTTA 57.215 37.500 0.00 0.00 39.13 2.24
1642 1792 5.677319 TTACCTCGGATGAAGAATGACTT 57.323 39.130 0.00 0.00 42.03 3.01
1643 1793 5.600484 AGATTACCTCGGATGAAGAATGACT 59.400 40.000 0.00 0.00 0.00 3.41
1644 1794 5.848406 AGATTACCTCGGATGAAGAATGAC 58.152 41.667 0.00 0.00 0.00 3.06
1645 1795 6.485830 AAGATTACCTCGGATGAAGAATGA 57.514 37.500 0.00 0.00 0.00 2.57
1646 1796 8.090831 TCATAAGATTACCTCGGATGAAGAATG 58.909 37.037 0.00 0.00 31.11 2.67
1647 1797 8.195165 TCATAAGATTACCTCGGATGAAGAAT 57.805 34.615 0.00 0.00 31.11 2.40
1648 1798 7.597288 TCATAAGATTACCTCGGATGAAGAA 57.403 36.000 0.00 0.00 31.11 2.52
1649 1799 7.451566 TGATCATAAGATTACCTCGGATGAAGA 59.548 37.037 0.00 0.00 35.10 2.87
1650 1800 7.543868 GTGATCATAAGATTACCTCGGATGAAG 59.456 40.741 0.00 0.00 35.38 3.02
1651 1801 7.233553 AGTGATCATAAGATTACCTCGGATGAA 59.766 37.037 0.00 0.00 40.56 2.57
1652 1802 6.721668 AGTGATCATAAGATTACCTCGGATGA 59.278 38.462 0.00 0.00 40.56 2.92
1653 1803 6.929625 AGTGATCATAAGATTACCTCGGATG 58.070 40.000 0.00 0.00 40.56 3.51
1654 1804 7.233553 TGAAGTGATCATAAGATTACCTCGGAT 59.766 37.037 0.00 0.00 40.56 4.18
1655 1805 6.549736 TGAAGTGATCATAAGATTACCTCGGA 59.450 38.462 0.00 0.00 40.56 4.55
1656 1806 6.749139 TGAAGTGATCATAAGATTACCTCGG 58.251 40.000 0.00 0.00 40.56 4.63
1786 1964 9.872757 CGCCGTAAGAAATATTTTATGTTATGT 57.127 29.630 1.43 0.00 43.02 2.29
1805 1983 9.075519 CCGTAAGAAAATATATAATCGCCGTAA 57.924 33.333 0.00 0.00 43.02 3.18
1806 1984 8.243426 ACCGTAAGAAAATATATAATCGCCGTA 58.757 33.333 0.00 0.00 43.02 4.02
1807 1985 7.092716 ACCGTAAGAAAATATATAATCGCCGT 58.907 34.615 0.00 0.00 43.02 5.68
1808 1986 7.487189 AGACCGTAAGAAAATATATAATCGCCG 59.513 37.037 0.00 0.00 43.02 6.46
1809 1987 8.699283 AGACCGTAAGAAAATATATAATCGCC 57.301 34.615 0.00 0.00 43.02 5.54
1810 1988 9.570488 AGAGACCGTAAGAAAATATATAATCGC 57.430 33.333 0.00 0.00 43.02 4.58
1818 1996 9.428097 ACGTAAAAAGAGACCGTAAGAAAATAT 57.572 29.630 0.00 0.00 43.02 1.28
1819 1997 8.816640 ACGTAAAAAGAGACCGTAAGAAAATA 57.183 30.769 0.00 0.00 43.02 1.40
1820 1998 7.439056 TGACGTAAAAAGAGACCGTAAGAAAAT 59.561 33.333 0.00 0.00 43.02 1.82
1821 1999 6.756074 TGACGTAAAAAGAGACCGTAAGAAAA 59.244 34.615 0.00 0.00 43.02 2.29
1822 2000 6.272318 TGACGTAAAAAGAGACCGTAAGAAA 58.728 36.000 0.00 0.00 43.02 2.52
1823 2001 5.830912 TGACGTAAAAAGAGACCGTAAGAA 58.169 37.500 0.00 0.00 43.02 2.52
1824 2002 5.437289 TGACGTAAAAAGAGACCGTAAGA 57.563 39.130 0.00 0.00 43.02 2.10
1825 2003 6.515043 TTTGACGTAAAAAGAGACCGTAAG 57.485 37.500 0.00 0.00 0.00 2.34
1826 2004 6.900568 TTTTGACGTAAAAAGAGACCGTAA 57.099 33.333 6.73 0.00 35.41 3.18
1827 2005 6.900568 TTTTTGACGTAAAAAGAGACCGTA 57.099 33.333 10.65 0.00 41.88 4.02
1828 2006 5.799681 TTTTTGACGTAAAAAGAGACCGT 57.200 34.783 10.65 0.00 41.88 4.83
1867 2045 8.719648 CCACCAATACACTACAATTTTACGTTA 58.280 33.333 0.00 0.00 0.00 3.18
1868 2046 7.229106 ACCACCAATACACTACAATTTTACGTT 59.771 33.333 0.00 0.00 0.00 3.99
1869 2047 6.711645 ACCACCAATACACTACAATTTTACGT 59.288 34.615 0.00 0.00 0.00 3.57
1870 2048 7.136289 ACCACCAATACACTACAATTTTACG 57.864 36.000 0.00 0.00 0.00 3.18
1873 2051 8.361889 GGTTTACCACCAATACACTACAATTTT 58.638 33.333 0.00 0.00 46.42 1.82
1874 2052 7.888424 GGTTTACCACCAATACACTACAATTT 58.112 34.615 0.00 0.00 46.42 1.82
1875 2053 7.457024 GGTTTACCACCAATACACTACAATT 57.543 36.000 0.00 0.00 46.42 2.32
2193 2371 4.660771 CCCTGGGTGAGGAATAGTTATTCT 59.339 45.833 3.97 0.00 46.33 2.40
2194 2372 4.412528 ACCCTGGGTGAGGAATAGTTATTC 59.587 45.833 19.82 3.75 46.33 1.75
2195 2373 4.380791 ACCCTGGGTGAGGAATAGTTATT 58.619 43.478 19.82 0.00 46.33 1.40
2196 2374 4.022359 ACCCTGGGTGAGGAATAGTTAT 57.978 45.455 19.82 0.00 46.33 1.89
2197 2375 3.502051 ACCCTGGGTGAGGAATAGTTA 57.498 47.619 19.82 0.00 46.33 2.24
2198 2376 2.361085 ACCCTGGGTGAGGAATAGTT 57.639 50.000 19.82 0.00 46.33 2.24
2208 2386 3.058297 CGATTATTCGTCACCCTGGGTG 61.058 54.545 35.28 35.28 44.57 4.61
2209 2387 1.138266 CGATTATTCGTCACCCTGGGT 59.862 52.381 14.05 14.05 40.53 4.51
2210 2388 1.865865 CGATTATTCGTCACCCTGGG 58.134 55.000 12.28 12.28 40.53 4.45
2221 2399 1.334059 CCCACGCATGCACGATTATTC 60.334 52.381 19.57 0.00 36.70 1.75
2222 2400 0.662619 CCCACGCATGCACGATTATT 59.337 50.000 19.57 0.00 36.70 1.40
2223 2401 0.179059 TCCCACGCATGCACGATTAT 60.179 50.000 19.57 0.00 36.70 1.28
2224 2402 0.809636 CTCCCACGCATGCACGATTA 60.810 55.000 19.57 0.00 36.70 1.75
2225 2403 2.046411 TCCCACGCATGCACGATT 60.046 55.556 19.57 0.00 36.70 3.34
2226 2404 2.512286 CTCCCACGCATGCACGAT 60.512 61.111 19.57 0.00 36.70 3.73
2227 2405 4.758251 CCTCCCACGCATGCACGA 62.758 66.667 19.57 5.70 36.70 4.35
2322 2500 2.342279 CGACTCCCAAGAACGGCA 59.658 61.111 0.00 0.00 0.00 5.69
2363 2541 1.692411 GTCAAGTTGAACCCCTTGCT 58.308 50.000 7.25 0.00 38.33 3.91
2451 2629 4.056050 GTTGATGTTGGACTCGTTGTAGT 58.944 43.478 0.00 0.00 0.00 2.73
2494 2672 0.538287 GACTGGGGCAGTTGAGCTTT 60.538 55.000 0.00 0.00 45.44 3.51
2665 2850 0.405198 ATGATGTCCTTGGTGGCACA 59.595 50.000 20.82 2.61 35.26 4.57
2683 2868 6.587273 CCTAGCTAGAAGCAAAGGACTTAAT 58.413 40.000 22.70 0.00 44.64 1.40
2689 2874 1.486726 GGCCTAGCTAGAAGCAAAGGA 59.513 52.381 22.70 0.00 44.64 3.36
2694 2879 2.797278 GGCGGCCTAGCTAGAAGCA 61.797 63.158 22.70 0.00 45.56 3.91
2704 2889 0.107848 GTGCTAAAGAAGGCGGCCTA 60.108 55.000 24.16 4.93 31.13 3.93
2722 2907 2.514592 CCATGGCGGATGCGAAGT 60.515 61.111 12.10 0.00 44.10 3.01
2831 3022 4.222847 GGTCGACGCCCCATCCTC 62.223 72.222 9.92 0.00 0.00 3.71
2855 3046 3.060615 GCAACCTCAGCTGCCCAG 61.061 66.667 9.47 0.70 32.18 4.45
2856 3047 3.573229 AGCAACCTCAGCTGCCCA 61.573 61.111 9.47 0.00 41.61 5.36
2861 3052 2.033757 CTGGCAGCAACCTCAGCT 59.966 61.111 0.00 0.00 44.62 4.24
2862 3053 2.282040 ACTGGCAGCAACCTCAGC 60.282 61.111 15.89 0.00 0.00 4.26
2863 3054 1.673665 GGACTGGCAGCAACCTCAG 60.674 63.158 15.89 0.00 0.00 3.35
2864 3055 1.782201 ATGGACTGGCAGCAACCTCA 61.782 55.000 15.89 4.56 0.00 3.86
2865 3056 1.001641 ATGGACTGGCAGCAACCTC 60.002 57.895 15.89 3.77 0.00 3.85
2866 3057 1.001641 GATGGACTGGCAGCAACCT 60.002 57.895 15.89 6.11 0.00 3.50
2867 3058 2.048603 GGATGGACTGGCAGCAACC 61.049 63.158 15.89 15.80 0.00 3.77
2868 3059 2.401766 CGGATGGACTGGCAGCAAC 61.402 63.158 15.89 5.54 0.00 4.17
2869 3060 2.046023 CGGATGGACTGGCAGCAA 60.046 61.111 15.89 0.95 0.00 3.91
2870 3061 3.002583 TCGGATGGACTGGCAGCA 61.003 61.111 15.89 5.77 0.00 4.41
2871 3062 2.202987 CTCGGATGGACTGGCAGC 60.203 66.667 15.89 7.42 0.00 5.25
2872 3063 0.036010 AAACTCGGATGGACTGGCAG 60.036 55.000 14.16 14.16 0.00 4.85
2873 3064 1.271856 TAAACTCGGATGGACTGGCA 58.728 50.000 0.00 0.00 0.00 4.92
2874 3065 2.280628 CTTAAACTCGGATGGACTGGC 58.719 52.381 0.00 0.00 0.00 4.85
2875 3066 3.522553 GACTTAAACTCGGATGGACTGG 58.477 50.000 0.00 0.00 0.00 4.00
2876 3067 3.522553 GGACTTAAACTCGGATGGACTG 58.477 50.000 0.00 0.00 0.00 3.51
2877 3068 2.500504 GGGACTTAAACTCGGATGGACT 59.499 50.000 0.00 0.00 0.00 3.85
2878 3069 2.737679 CGGGACTTAAACTCGGATGGAC 60.738 54.545 0.00 0.00 0.00 4.02
2879 3070 1.479323 CGGGACTTAAACTCGGATGGA 59.521 52.381 0.00 0.00 0.00 3.41
2880 3071 1.935933 CGGGACTTAAACTCGGATGG 58.064 55.000 0.00 0.00 0.00 3.51
2885 3076 1.076332 CAAGCCGGGACTTAAACTCG 58.924 55.000 2.18 0.00 0.00 4.18
2886 3077 1.002773 TCCAAGCCGGGACTTAAACTC 59.997 52.381 2.18 0.00 34.36 3.01
2887 3078 1.061546 TCCAAGCCGGGACTTAAACT 58.938 50.000 2.18 0.00 34.36 2.66
2888 3079 3.637184 TCCAAGCCGGGACTTAAAC 57.363 52.632 2.18 0.00 34.36 2.01
2916 3107 1.202302 TGATAGGAGAAACTGCGCGAG 60.202 52.381 12.10 7.21 0.00 5.03
2917 3108 0.815095 TGATAGGAGAAACTGCGCGA 59.185 50.000 12.10 0.00 0.00 5.87
2918 3109 1.590238 CTTGATAGGAGAAACTGCGCG 59.410 52.381 0.00 0.00 0.00 6.86
2919 3110 2.893637 TCTTGATAGGAGAAACTGCGC 58.106 47.619 0.00 0.00 0.00 6.09
2920 3111 5.672321 GCTTTTCTTGATAGGAGAAACTGCG 60.672 44.000 0.00 0.00 41.42 5.18
2921 3112 5.392487 GGCTTTTCTTGATAGGAGAAACTGC 60.392 44.000 11.78 11.78 41.42 4.40
2922 3113 5.707298 TGGCTTTTCTTGATAGGAGAAACTG 59.293 40.000 0.00 0.00 41.42 3.16
2923 3114 5.880901 TGGCTTTTCTTGATAGGAGAAACT 58.119 37.500 0.00 0.00 41.42 2.66
2924 3115 6.349694 CCTTGGCTTTTCTTGATAGGAGAAAC 60.350 42.308 0.00 0.00 41.42 2.78
2925 3116 5.711976 CCTTGGCTTTTCTTGATAGGAGAAA 59.288 40.000 0.00 0.00 40.36 2.52
2926 3117 5.014123 TCCTTGGCTTTTCTTGATAGGAGAA 59.986 40.000 0.00 0.00 0.00 2.87
2927 3118 4.536090 TCCTTGGCTTTTCTTGATAGGAGA 59.464 41.667 0.00 0.00 0.00 3.71
2928 3119 4.848357 TCCTTGGCTTTTCTTGATAGGAG 58.152 43.478 0.00 0.00 0.00 3.69
2929 3120 4.324563 CCTCCTTGGCTTTTCTTGATAGGA 60.325 45.833 0.00 0.00 0.00 2.94
2930 3121 3.950395 CCTCCTTGGCTTTTCTTGATAGG 59.050 47.826 0.00 0.00 0.00 2.57
2931 3122 3.950395 CCCTCCTTGGCTTTTCTTGATAG 59.050 47.826 0.00 0.00 0.00 2.08
2932 3123 3.333680 ACCCTCCTTGGCTTTTCTTGATA 59.666 43.478 0.00 0.00 0.00 2.15
2933 3124 2.110721 ACCCTCCTTGGCTTTTCTTGAT 59.889 45.455 0.00 0.00 0.00 2.57
2934 3125 1.499007 ACCCTCCTTGGCTTTTCTTGA 59.501 47.619 0.00 0.00 0.00 3.02
2935 3126 2.001076 ACCCTCCTTGGCTTTTCTTG 57.999 50.000 0.00 0.00 0.00 3.02
2936 3127 2.775490 AACCCTCCTTGGCTTTTCTT 57.225 45.000 0.00 0.00 0.00 2.52
2937 3128 2.555448 GCTAACCCTCCTTGGCTTTTCT 60.555 50.000 0.00 0.00 0.00 2.52
2938 3129 1.819288 GCTAACCCTCCTTGGCTTTTC 59.181 52.381 0.00 0.00 0.00 2.29
2939 3130 1.550179 GGCTAACCCTCCTTGGCTTTT 60.550 52.381 0.00 0.00 0.00 2.27
2940 3131 0.039764 GGCTAACCCTCCTTGGCTTT 59.960 55.000 0.00 0.00 0.00 3.51
2941 3132 0.846870 AGGCTAACCCTCCTTGGCTT 60.847 55.000 0.00 0.00 41.21 4.35
2942 3133 0.846870 AAGGCTAACCCTCCTTGGCT 60.847 55.000 0.00 0.00 45.62 4.75
2943 3134 1.691823 AAGGCTAACCCTCCTTGGC 59.308 57.895 0.00 0.00 45.62 4.52
2946 3137 0.477795 ACCCAAGGCTAACCCTCCTT 60.478 55.000 0.00 0.00 45.62 3.36
2947 3138 0.477795 AACCCAAGGCTAACCCTCCT 60.478 55.000 0.00 0.00 45.62 3.69
2948 3139 0.323451 CAACCCAAGGCTAACCCTCC 60.323 60.000 0.00 0.00 45.62 4.30
2949 3140 0.323451 CCAACCCAAGGCTAACCCTC 60.323 60.000 0.00 0.00 45.62 4.30
2951 3142 0.611062 GACCAACCCAAGGCTAACCC 60.611 60.000 0.00 0.00 36.11 4.11
2952 3143 0.404426 AGACCAACCCAAGGCTAACC 59.596 55.000 0.00 0.00 0.00 2.85
2953 3144 1.073284 TGAGACCAACCCAAGGCTAAC 59.927 52.381 0.00 0.00 0.00 2.34
2954 3145 1.440618 TGAGACCAACCCAAGGCTAA 58.559 50.000 0.00 0.00 0.00 3.09
2955 3146 1.668826 ATGAGACCAACCCAAGGCTA 58.331 50.000 0.00 0.00 0.00 3.93
2956 3147 0.779997 AATGAGACCAACCCAAGGCT 59.220 50.000 0.00 0.00 0.00 4.58
2957 3148 1.632589 AAATGAGACCAACCCAAGGC 58.367 50.000 0.00 0.00 0.00 4.35
2979 3170 9.213799 GGTGCAAATTAAATGGTGATTCTTAAA 57.786 29.630 0.00 0.00 0.00 1.52
2980 3171 7.821846 GGGTGCAAATTAAATGGTGATTCTTAA 59.178 33.333 0.00 0.00 0.00 1.85
2981 3172 7.038729 TGGGTGCAAATTAAATGGTGATTCTTA 60.039 33.333 0.00 0.00 0.00 2.10
2982 3173 6.172630 GGGTGCAAATTAAATGGTGATTCTT 58.827 36.000 0.00 0.00 0.00 2.52
2983 3174 5.248020 TGGGTGCAAATTAAATGGTGATTCT 59.752 36.000 0.00 0.00 0.00 2.40
2984 3175 5.486526 TGGGTGCAAATTAAATGGTGATTC 58.513 37.500 0.00 0.00 0.00 2.52
2985 3176 5.495926 TGGGTGCAAATTAAATGGTGATT 57.504 34.783 0.00 0.00 0.00 2.57
2986 3177 5.495926 TTGGGTGCAAATTAAATGGTGAT 57.504 34.783 0.00 0.00 0.00 3.06
2987 3178 4.963318 TTGGGTGCAAATTAAATGGTGA 57.037 36.364 0.00 0.00 0.00 4.02
2988 3179 5.704515 TCATTTGGGTGCAAATTAAATGGTG 59.295 36.000 18.69 4.55 38.56 4.17
2989 3180 5.704978 GTCATTTGGGTGCAAATTAAATGGT 59.295 36.000 18.69 0.00 38.56 3.55
2990 3181 5.704515 TGTCATTTGGGTGCAAATTAAATGG 59.295 36.000 18.69 7.77 38.56 3.16
2991 3182 6.621164 GCTGTCATTTGGGTGCAAATTAAATG 60.621 38.462 15.35 15.35 39.09 2.32
2992 3183 5.412286 GCTGTCATTTGGGTGCAAATTAAAT 59.588 36.000 0.00 0.00 32.97 1.40
2993 3184 4.754114 GCTGTCATTTGGGTGCAAATTAAA 59.246 37.500 0.00 0.00 32.97 1.52
2994 3185 4.314121 GCTGTCATTTGGGTGCAAATTAA 58.686 39.130 0.00 0.00 32.97 1.40
2995 3186 3.613671 CGCTGTCATTTGGGTGCAAATTA 60.614 43.478 0.00 0.00 32.97 1.40
2996 3187 2.769893 GCTGTCATTTGGGTGCAAATT 58.230 42.857 0.00 0.00 32.97 1.82
3024 3215 2.065899 AAGCAGCAGGTTTGTTGGTA 57.934 45.000 0.00 0.00 43.99 3.25
3153 3347 9.606631 GAAGAGAAACATATAGAAGAATGGTGT 57.393 33.333 0.00 0.00 0.00 4.16
3283 3477 6.831353 TCTGAAACTTTGGGAAACTTGACATA 59.169 34.615 0.00 0.00 0.00 2.29
3326 3520 5.657474 ACTGAAGTGAACGTTCTAGTGAAA 58.343 37.500 27.32 3.98 33.52 2.69
3327 3521 5.258456 ACTGAAGTGAACGTTCTAGTGAA 57.742 39.130 27.32 4.74 0.00 3.18
3329 3523 4.318121 GCAACTGAAGTGAACGTTCTAGTG 60.318 45.833 27.32 14.99 0.00 2.74
3330 3524 3.802685 GCAACTGAAGTGAACGTTCTAGT 59.197 43.478 27.32 18.98 0.00 2.57
3331 3525 3.802139 TGCAACTGAAGTGAACGTTCTAG 59.198 43.478 27.32 18.44 0.00 2.43
3332 3526 3.554324 GTGCAACTGAAGTGAACGTTCTA 59.446 43.478 27.32 12.37 0.00 2.10
3333 3527 2.351726 GTGCAACTGAAGTGAACGTTCT 59.648 45.455 27.32 9.06 0.00 3.01
3334 3528 2.095213 TGTGCAACTGAAGTGAACGTTC 59.905 45.455 21.42 21.42 38.04 3.95
3335 3529 2.080693 TGTGCAACTGAAGTGAACGTT 58.919 42.857 0.00 0.00 38.04 3.99
3336 3530 1.396996 GTGTGCAACTGAAGTGAACGT 59.603 47.619 0.00 0.00 38.04 3.99
3337 3531 1.665679 AGTGTGCAACTGAAGTGAACG 59.334 47.619 0.00 0.00 37.88 3.95
3338 3532 3.764885 AAGTGTGCAACTGAAGTGAAC 57.235 42.857 0.00 0.00 39.81 3.18
3350 3544 4.991153 TGGAACATGTAAAAAGTGTGCA 57.009 36.364 0.00 0.00 0.00 4.57
3497 3881 4.090066 GCGTGTAACAAGATGTACAGTCTG 59.910 45.833 0.33 0.00 35.74 3.51
3498 3882 4.235360 GCGTGTAACAAGATGTACAGTCT 58.765 43.478 0.33 1.97 35.74 3.24
3501 3885 5.276395 GCTATGCGTGTAACAAGATGTACAG 60.276 44.000 0.33 0.00 35.74 2.74
3531 3915 0.734597 CGCACGCACACCACTACATA 60.735 55.000 0.00 0.00 0.00 2.29
3532 3916 2.027073 CGCACGCACACCACTACAT 61.027 57.895 0.00 0.00 0.00 2.29
3554 3941 1.213182 TGTACAACACACACCCCACAT 59.787 47.619 0.00 0.00 30.04 3.21
3570 3957 5.224888 TGTCGTAAACCAGAACAGATGTAC 58.775 41.667 0.00 0.00 0.00 2.90
3593 3981 6.604171 TTGAGCCTCAATTACATGGATACAT 58.396 36.000 2.24 0.00 45.10 2.29
3655 4043 4.235360 CAACAACGTAGAAAGAGGACGAT 58.765 43.478 0.06 0.00 39.81 3.73
3663 4051 1.600023 TGCCCCAACAACGTAGAAAG 58.400 50.000 0.00 0.00 0.00 2.62
3714 4103 4.000988 TGGGCTTCTTTCGATACAAGTTC 58.999 43.478 0.00 0.00 0.00 3.01
3721 4110 3.008594 TCCTTTGTGGGCTTCTTTCGATA 59.991 43.478 0.00 0.00 36.20 2.92
3722 4111 2.162681 CCTTTGTGGGCTTCTTTCGAT 58.837 47.619 0.00 0.00 0.00 3.59
3725 4114 4.158579 CCTAATCCTTTGTGGGCTTCTTTC 59.841 45.833 0.00 0.00 36.20 2.62
3731 4120 1.992557 TGACCTAATCCTTTGTGGGCT 59.007 47.619 0.00 0.00 36.20 5.19
3739 4128 8.964533 ATAGATGTACTCATGACCTAATCCTT 57.035 34.615 0.00 0.00 34.06 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.