Multiple sequence alignment - TraesCS1B01G181800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G181800 chr1B 100.000 7626 0 0 1 7626 328827442 328819817 0.000000e+00 14083.0
1 TraesCS1B01G181800 chr1B 92.982 114 6 2 1930 2042 328825401 328825513 1.700000e-36 165.0
2 TraesCS1B01G181800 chr1D 89.189 2664 136 59 2041 4617 229488492 229485894 0.000000e+00 3184.0
3 TraesCS1B01G181800 chr1D 94.164 1919 90 13 5075 6983 229485308 229483402 0.000000e+00 2904.0
4 TraesCS1B01G181800 chr1D 91.206 1012 39 16 724 1725 229489657 229488686 0.000000e+00 1330.0
5 TraesCS1B01G181800 chr1D 92.547 483 33 3 4595 5076 229485817 229485337 0.000000e+00 689.0
6 TraesCS1B01G181800 chr1D 83.821 581 44 25 7068 7626 229483336 229482784 2.460000e-139 507.0
7 TraesCS1B01G181800 chr1D 89.474 114 6 3 1818 1931 229488598 229488491 1.030000e-28 139.0
8 TraesCS1B01G181800 chr1A 93.743 1918 95 16 5075 6983 297746714 297744813 0.000000e+00 2854.0
9 TraesCS1B01G181800 chr1A 88.570 2336 226 24 4635 6959 99657894 99660199 0.000000e+00 2796.0
10 TraesCS1B01G181800 chr1A 89.139 2044 183 22 4642 6663 99700118 99698092 0.000000e+00 2508.0
11 TraesCS1B01G181800 chr1A 88.951 1077 72 21 3560 4617 297748351 297747303 0.000000e+00 1286.0
12 TraesCS1B01G181800 chr1A 82.025 1057 80 44 2111 3070 297749979 297748936 0.000000e+00 798.0
13 TraesCS1B01G181800 chr1A 93.154 482 33 0 4595 5076 297747224 297746743 0.000000e+00 708.0
14 TraesCS1B01G181800 chr1A 86.385 639 29 26 724 1321 297751211 297750590 0.000000e+00 645.0
15 TraesCS1B01G181800 chr1A 89.002 491 31 16 3066 3538 297748834 297748349 3.070000e-163 586.0
16 TraesCS1B01G181800 chr1A 88.325 394 25 9 1427 1813 297750550 297750171 3.240000e-123 453.0
17 TraesCS1B01G181800 chr1A 85.304 313 38 5 7320 7625 297740833 297740522 4.440000e-82 316.0
18 TraesCS1B01G181800 chr1A 88.462 260 27 2 4361 4617 99700473 99700214 2.070000e-80 311.0
19 TraesCS1B01G181800 chr1A 80.412 291 42 10 833 1121 99621631 99621908 2.790000e-49 207.0
20 TraesCS1B01G181800 chr1A 80.534 262 22 14 2585 2836 99701085 99700843 2.830000e-39 174.0
21 TraesCS1B01G181800 chr1A 87.500 160 5 6 7179 7323 297741047 297740888 3.660000e-38 171.0
22 TraesCS1B01G181800 chr1A 93.103 116 5 3 1930 2042 53467522 53467637 4.730000e-37 167.0
23 TraesCS1B01G181800 chr1A 92.308 117 6 2 1929 2042 53467638 53467522 6.120000e-36 163.0
24 TraesCS1B01G181800 chr1A 90.984 122 7 2 1929 2046 72678886 72678765 2.200000e-35 161.0
25 TraesCS1B01G181800 chr1A 91.453 117 6 2 1930 2042 72678769 72678885 2.850000e-34 158.0
26 TraesCS1B01G181800 chr1A 100.000 30 0 0 2842 2871 99700602 99700573 1.000000e-03 56.5
27 TraesCS1B01G181800 chr5D 88.544 2322 219 33 4657 6959 11433350 11435643 0.000000e+00 2771.0
28 TraesCS1B01G181800 chr5D 87.590 2079 187 33 4637 6663 11531493 11529434 0.000000e+00 2344.0
29 TraesCS1B01G181800 chr5D 88.846 260 26 2 4361 4617 11531844 11531585 4.440000e-82 316.0
30 TraesCS1B01G181800 chr5D 85.315 286 37 2 4311 4592 388408339 388408055 2.690000e-74 291.0
31 TraesCS1B01G181800 chr5D 85.121 289 34 4 4308 4592 462800470 462800753 3.480000e-73 287.0
32 TraesCS1B01G181800 chr5D 81.379 290 40 9 833 1121 11431665 11431941 2.770000e-54 224.0
33 TraesCS1B01G181800 chr5D 77.384 367 55 17 2584 2933 11432355 11432710 7.810000e-45 193.0
34 TraesCS1B01G181800 chr5D 79.693 261 26 16 2585 2836 11532462 11532220 6.120000e-36 163.0
35 TraesCS1B01G181800 chr5D 90.833 120 5 3 1924 2042 478223404 478223290 1.020000e-33 156.0
36 TraesCS1B01G181800 chr5D 89.655 116 7 3 1927 2042 478223287 478223397 7.980000e-30 143.0
37 TraesCS1B01G181800 chr5B 88.443 2042 187 32 4642 6657 11515163 11517181 0.000000e+00 2418.0
38 TraesCS1B01G181800 chr5B 86.523 1996 184 42 4895 6867 11552402 11550469 0.000000e+00 2117.0
39 TraesCS1B01G181800 chr5B 96.566 728 22 3 1 728 212410240 212410964 0.000000e+00 1203.0
40 TraesCS1B01G181800 chr5B 96.547 724 24 1 1 724 341066071 341066793 0.000000e+00 1197.0
41 TraesCS1B01G181800 chr5B 83.791 401 51 8 4197 4591 11555393 11555001 1.210000e-97 368.0
42 TraesCS1B01G181800 chr5B 88.519 270 27 2 4635 4902 11554897 11554630 2.650000e-84 324.0
43 TraesCS1B01G181800 chr5B 88.258 264 24 3 4361 4617 11514802 11515065 7.430000e-80 309.0
44 TraesCS1B01G181800 chr5B 80.756 291 46 9 833 1121 11513307 11513589 1.290000e-52 219.0
45 TraesCS1B01G181800 chr5B 83.556 225 25 6 2584 2805 11555711 11555496 4.670000e-47 200.0
46 TraesCS1B01G181800 chr5B 87.050 139 18 0 2689 2827 11514285 11514423 2.850000e-34 158.0
47 TraesCS1B01G181800 chr6B 96.828 725 21 2 1 724 407168695 407167972 0.000000e+00 1210.0
48 TraesCS1B01G181800 chr6B 95.576 746 28 5 1 742 77620348 77619604 0.000000e+00 1190.0
49 TraesCS1B01G181800 chr6B 93.043 115 7 1 1929 2042 39203609 39203495 4.730000e-37 167.0
50 TraesCS1B01G181800 chr4B 96.690 725 22 2 1 725 244918597 244919319 0.000000e+00 1205.0
51 TraesCS1B01G181800 chr4B 91.379 116 8 2 1929 2042 646978752 646978867 2.850000e-34 158.0
52 TraesCS1B01G181800 chr2B 96.690 725 21 3 1 724 23675888 23676610 0.000000e+00 1203.0
53 TraesCS1B01G181800 chr2B 96.685 724 22 2 1 724 232743172 232742451 0.000000e+00 1203.0
54 TraesCS1B01G181800 chr4A 96.301 730 25 2 1 730 37012640 37011913 0.000000e+00 1197.0
55 TraesCS1B01G181800 chr4A 89.344 122 8 1 1930 2046 558550976 558551097 1.710000e-31 148.0
56 TraesCS1B01G181800 chr3B 96.547 724 23 2 1 724 166167435 166166714 0.000000e+00 1197.0
57 TraesCS1B01G181800 chr3B 91.597 119 5 2 1929 2042 346682716 346682598 7.920000e-35 159.0
58 TraesCS1B01G181800 chr4D 86.301 292 36 2 4311 4599 505952201 505951911 1.600000e-81 315.0
59 TraesCS1B01G181800 chr4D 82.031 128 9 5 1930 2043 120692672 120692545 6.300000e-16 97.1
60 TraesCS1B01G181800 chr4D 82.051 117 7 7 1924 2026 337135965 337136081 3.790000e-13 87.9
61 TraesCS1B01G181800 chr4D 80.645 124 10 4 1933 2042 108906247 108906370 4.900000e-12 84.2
62 TraesCS1B01G181800 chr4D 96.000 50 2 0 1984 2033 366320078 366320127 1.760000e-11 82.4
63 TraesCS1B01G181800 chr4D 96.000 50 2 0 1935 1984 366320131 366320082 1.760000e-11 82.4
64 TraesCS1B01G181800 chr4D 79.688 128 12 7 1929 2042 16924180 16924053 6.340000e-11 80.5
65 TraesCS1B01G181800 chr4D 79.528 127 12 8 1930 2042 120692546 120692672 2.280000e-10 78.7
66 TraesCS1B01G181800 chr4D 94.444 36 2 0 1929 1964 69190388 69190423 1.000000e-03 56.5
67 TraesCS1B01G181800 chr4D 100.000 28 0 0 1930 1957 30008037 30008064 1.400000e-02 52.8
68 TraesCS1B01G181800 chr4D 100.000 28 0 0 1930 1957 45701903 45701930 1.400000e-02 52.8
69 TraesCS1B01G181800 chr4D 100.000 28 0 0 1930 1957 392514708 392514735 1.400000e-02 52.8
70 TraesCS1B01G181800 chr6A 93.443 122 5 1 1925 2043 543531423 543531544 2.190000e-40 178.0
71 TraesCS1B01G181800 chr6A 91.667 132 6 1 1926 2052 572335429 572335560 2.190000e-40 178.0
72 TraesCS1B01G181800 chr6A 91.935 124 6 3 1930 2050 543531543 543531421 3.660000e-38 171.0
73 TraesCS1B01G181800 chr6A 89.831 118 7 2 1930 2042 572335550 572335433 6.170000e-31 147.0
74 TraesCS1B01G181800 chrUn 84.444 135 7 2 1926 2046 258882 259016 3.740000e-23 121.0
75 TraesCS1B01G181800 chrUn 85.124 121 4 3 1926 2032 48357372 48357252 2.250000e-20 111.0
76 TraesCS1B01G181800 chrUn 85.124 121 4 3 1926 2032 282070297 282070177 2.250000e-20 111.0
77 TraesCS1B01G181800 chrUn 85.124 121 4 3 1926 2032 293225989 293225869 2.250000e-20 111.0
78 TraesCS1B01G181800 chrUn 84.746 118 4 7 1929 2032 82049353 82049470 1.050000e-18 106.0
79 TraesCS1B01G181800 chrUn 84.615 117 4 1 1929 2031 30405422 30405306 3.760000e-18 104.0
80 TraesCS1B01G181800 chrUn 84.762 105 12 3 1929 2033 43095516 43095616 1.350000e-17 102.0
81 TraesCS1B01G181800 chrUn 84.762 105 12 3 1929 2033 43259042 43258942 1.350000e-17 102.0
82 TraesCS1B01G181800 chrUn 84.762 105 12 3 1929 2033 262842372 262842472 1.350000e-17 102.0
83 TraesCS1B01G181800 chrUn 84.762 105 12 3 1929 2033 293234339 293234439 1.350000e-17 102.0
84 TraesCS1B01G181800 chrUn 86.905 84 7 3 1943 2026 43095612 43095533 2.930000e-14 91.6
85 TraesCS1B01G181800 chrUn 86.207 87 8 3 1940 2026 43258943 43259025 2.930000e-14 91.6
86 TraesCS1B01G181800 chrUn 86.905 84 7 3 1943 2026 262842468 262842389 2.930000e-14 91.6
87 TraesCS1B01G181800 chrUn 86.905 84 7 3 1943 2026 293234435 293234356 2.930000e-14 91.6
88 TraesCS1B01G181800 chr7B 84.146 82 12 1 4942 5023 547966533 547966613 2.280000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G181800 chr1B 328819817 328827442 7625 True 14083.000000 14083 100.000000 1 7626 1 chr1B.!!$R1 7625
1 TraesCS1B01G181800 chr1D 229482784 229489657 6873 True 1458.833333 3184 90.066833 724 7626 6 chr1D.!!$R1 6902
2 TraesCS1B01G181800 chr1A 99657894 99660199 2305 False 2796.000000 2796 88.570000 4635 6959 1 chr1A.!!$F4 2324
3 TraesCS1B01G181800 chr1A 297740522 297751211 10689 True 868.555556 2854 88.265444 724 7625 9 chr1A.!!$R4 6901
4 TraesCS1B01G181800 chr1A 99698092 99701085 2993 True 762.375000 2508 89.533750 2585 6663 4 chr1A.!!$R3 4078
5 TraesCS1B01G181800 chr5D 11431665 11435643 3978 False 1062.666667 2771 82.435667 833 6959 3 chr5D.!!$F3 6126
6 TraesCS1B01G181800 chr5D 11529434 11532462 3028 True 941.000000 2344 85.376333 2585 6663 3 chr5D.!!$R3 4078
7 TraesCS1B01G181800 chr5B 212410240 212410964 724 False 1203.000000 1203 96.566000 1 728 1 chr5B.!!$F1 727
8 TraesCS1B01G181800 chr5B 341066071 341066793 722 False 1197.000000 1197 96.547000 1 724 1 chr5B.!!$F2 723
9 TraesCS1B01G181800 chr5B 11513307 11517181 3874 False 776.000000 2418 86.126750 833 6657 4 chr5B.!!$F3 5824
10 TraesCS1B01G181800 chr5B 11550469 11555711 5242 True 752.250000 2117 85.597250 2584 6867 4 chr5B.!!$R1 4283
11 TraesCS1B01G181800 chr6B 407167972 407168695 723 True 1210.000000 1210 96.828000 1 724 1 chr6B.!!$R3 723
12 TraesCS1B01G181800 chr6B 77619604 77620348 744 True 1190.000000 1190 95.576000 1 742 1 chr6B.!!$R2 741
13 TraesCS1B01G181800 chr4B 244918597 244919319 722 False 1205.000000 1205 96.690000 1 725 1 chr4B.!!$F1 724
14 TraesCS1B01G181800 chr2B 23675888 23676610 722 False 1203.000000 1203 96.690000 1 724 1 chr2B.!!$F1 723
15 TraesCS1B01G181800 chr2B 232742451 232743172 721 True 1203.000000 1203 96.685000 1 724 1 chr2B.!!$R1 723
16 TraesCS1B01G181800 chr4A 37011913 37012640 727 True 1197.000000 1197 96.301000 1 730 1 chr4A.!!$R1 729
17 TraesCS1B01G181800 chr3B 166166714 166167435 721 True 1197.000000 1197 96.547000 1 724 1 chr3B.!!$R1 723

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
643 645 1.211709 GCGGGCGCTACACAAAAAT 59.788 52.632 7.64 0.0 38.26 1.82 F
1399 1449 0.110869 CCCTCGGGAGTAGGAGTAGG 59.889 65.000 0.00 0.0 36.08 3.18 F
1936 2040 0.253160 TTGGCCACCATCTACTCCCT 60.253 55.000 3.88 0.0 31.53 4.20 F
3458 4414 0.034337 TACAAGGAACACGACAGCCC 59.966 55.000 0.00 0.0 0.00 5.19 F
4242 5230 0.668535 GAGTTGGGTTGTTGGTGCTC 59.331 55.000 0.00 0.0 0.00 4.26 F
5035 8402 0.811616 AAATGCCAGGATCGCTCGAC 60.812 55.000 0.00 0.0 0.00 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2457 2909 0.242286 CCGACACACACAGAGAGGAG 59.758 60.000 0.00 0.0 0.00 3.69 R
2763 3293 0.891449 GATCTCCTCGCTGATCCCGA 60.891 60.000 5.60 5.6 34.60 5.14 R
3560 4525 0.108019 AAAGGAGAAAAGGCGTCCGT 59.892 50.000 0.00 0.0 35.33 4.69 R
5454 8863 1.272212 CCCTAAACGGCAAAAGCACAT 59.728 47.619 0.00 0.0 0.00 3.21 R
5503 8912 0.478507 AGCTATTACCACCCATGCCC 59.521 55.000 0.00 0.0 0.00 5.36 R
6838 10332 0.098200 GGCGCTACGAAAACCCATTC 59.902 55.000 7.64 0.0 0.00 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
571 573 3.702048 GGCTGCCACGGTGGACTA 61.702 66.667 30.65 14.20 40.96 2.59
573 575 2.646175 GCTGCCACGGTGGACTAGA 61.646 63.158 30.65 7.16 40.96 2.43
643 645 1.211709 GCGGGCGCTACACAAAAAT 59.788 52.632 7.64 0.00 38.26 1.82
976 999 2.784356 CCTCCTCTGCTCCTGCTCG 61.784 68.421 0.00 0.00 40.48 5.03
977 1000 3.429080 CTCCTCTGCTCCTGCTCGC 62.429 68.421 0.00 0.00 40.48 5.03
979 1002 2.104729 CTCTGCTCCTGCTCGCTC 59.895 66.667 0.00 0.00 40.48 5.03
980 1003 3.754740 CTCTGCTCCTGCTCGCTCG 62.755 68.421 0.00 0.00 40.48 5.03
1213 1246 4.083862 GCCACCGTCCACCTCCTC 62.084 72.222 0.00 0.00 0.00 3.71
1238 1271 4.127171 TCTTGTCTTTTCCTCCTCGTTTG 58.873 43.478 0.00 0.00 0.00 2.93
1306 1349 2.969238 CTGCCGCCCGATTAGCAG 60.969 66.667 0.00 0.00 45.92 4.24
1321 1364 4.701956 TTAGCAGGAACAAAGCAATAGC 57.298 40.909 0.00 0.00 42.56 2.97
1322 1365 2.517959 AGCAGGAACAAAGCAATAGCA 58.482 42.857 0.00 0.00 45.49 3.49
1324 1367 4.272489 AGCAGGAACAAAGCAATAGCATA 58.728 39.130 0.00 0.00 45.49 3.14
1370 1420 6.759497 ACCAGAACAAATTAGTAAGATGGC 57.241 37.500 0.00 0.00 0.00 4.40
1372 1422 6.948309 ACCAGAACAAATTAGTAAGATGGCTT 59.052 34.615 0.00 0.00 38.15 4.35
1375 1425 7.965107 CAGAACAAATTAGTAAGATGGCTTCAC 59.035 37.037 3.03 0.00 35.56 3.18
1385 1435 3.787001 GGCTTCACCCCTCCCTCG 61.787 72.222 0.00 0.00 0.00 4.63
1396 1446 4.183398 TCCCTCGGGAGTAGGAGT 57.817 61.111 0.00 0.00 39.76 3.85
1399 1449 0.110869 CCCTCGGGAGTAGGAGTAGG 59.889 65.000 0.00 0.00 36.08 3.18
1400 1450 1.138568 CCTCGGGAGTAGGAGTAGGA 58.861 60.000 0.00 0.00 36.08 2.94
1401 1451 1.072648 CCTCGGGAGTAGGAGTAGGAG 59.927 61.905 0.00 0.00 36.08 3.69
1402 1452 1.770061 CTCGGGAGTAGGAGTAGGAGT 59.230 57.143 0.00 0.00 0.00 3.85
1403 1453 2.971330 CTCGGGAGTAGGAGTAGGAGTA 59.029 54.545 0.00 0.00 0.00 2.59
1404 1454 2.971330 TCGGGAGTAGGAGTAGGAGTAG 59.029 54.545 0.00 0.00 0.00 2.57
1405 1455 2.038820 CGGGAGTAGGAGTAGGAGTAGG 59.961 59.091 0.00 0.00 0.00 3.18
1406 1456 3.325605 GGGAGTAGGAGTAGGAGTAGGA 58.674 54.545 0.00 0.00 0.00 2.94
1407 1457 3.328637 GGGAGTAGGAGTAGGAGTAGGAG 59.671 56.522 0.00 0.00 0.00 3.69
1408 1458 3.975982 GGAGTAGGAGTAGGAGTAGGAGT 59.024 52.174 0.00 0.00 0.00 3.85
1409 1459 5.154418 GGAGTAGGAGTAGGAGTAGGAGTA 58.846 50.000 0.00 0.00 0.00 2.59
1410 1460 5.246883 GGAGTAGGAGTAGGAGTAGGAGTAG 59.753 52.000 0.00 0.00 0.00 2.57
1411 1461 5.157395 AGTAGGAGTAGGAGTAGGAGTAGG 58.843 50.000 0.00 0.00 0.00 3.18
1412 1462 4.298951 AGGAGTAGGAGTAGGAGTAGGA 57.701 50.000 0.00 0.00 0.00 2.94
1413 1463 4.644010 AGGAGTAGGAGTAGGAGTAGGAA 58.356 47.826 0.00 0.00 0.00 3.36
1414 1464 4.661709 AGGAGTAGGAGTAGGAGTAGGAAG 59.338 50.000 0.00 0.00 0.00 3.46
1415 1465 4.413189 GGAGTAGGAGTAGGAGTAGGAAGT 59.587 50.000 0.00 0.00 0.00 3.01
1416 1466 5.606329 GGAGTAGGAGTAGGAGTAGGAAGTA 59.394 48.000 0.00 0.00 0.00 2.24
1417 1467 6.239686 GGAGTAGGAGTAGGAGTAGGAAGTAG 60.240 50.000 0.00 0.00 0.00 2.57
1432 1482 4.168479 AGGAAGTAGGAGTAGGAAGTAGGG 59.832 50.000 0.00 0.00 0.00 3.53
1458 1508 1.666189 GCTGACCGTAAAGAATCTGCC 59.334 52.381 0.00 0.00 31.86 4.85
1467 1517 4.166011 GAATCTGCCGTGGTGCGC 62.166 66.667 0.00 0.00 39.71 6.09
1492 1542 3.936772 GATGGTGGCTTTGGGGCGA 62.937 63.158 0.00 0.00 44.11 5.54
1493 1543 3.944250 ATGGTGGCTTTGGGGCGAG 62.944 63.158 0.00 0.00 44.11 5.03
1700 1758 2.574322 CAATTTCTGTTCCGCTTCGTG 58.426 47.619 0.00 0.00 0.00 4.35
1731 1791 4.160736 ACGGTTTTCCTACGTACAGTAC 57.839 45.455 0.00 0.00 39.30 2.73
1732 1792 3.821033 ACGGTTTTCCTACGTACAGTACT 59.179 43.478 9.10 0.00 39.30 2.73
1733 1793 5.001232 ACGGTTTTCCTACGTACAGTACTA 58.999 41.667 9.10 0.49 39.30 1.82
1737 1797 7.542130 CGGTTTTCCTACGTACAGTACTATTTT 59.458 37.037 9.10 0.00 37.95 1.82
1739 1799 8.864024 GTTTTCCTACGTACAGTACTATTTTCC 58.136 37.037 9.10 0.00 0.00 3.13
1761 1821 6.966021 TCCTTTTTCTTACAATTTCTGTCCG 58.034 36.000 0.00 0.00 39.64 4.79
1762 1822 6.016610 TCCTTTTTCTTACAATTTCTGTCCGG 60.017 38.462 0.00 0.00 39.64 5.14
1764 1824 3.695830 TCTTACAATTTCTGTCCGGCT 57.304 42.857 0.00 0.00 39.64 5.52
1786 1846 4.499037 ACGTATTTTCTTTTGGCTGGAC 57.501 40.909 0.00 0.00 0.00 4.02
1813 1875 6.638610 AGGATGAGATATTTGGCGATAAGAG 58.361 40.000 0.00 0.00 0.00 2.85
1814 1876 5.293079 GGATGAGATATTTGGCGATAAGAGC 59.707 44.000 0.00 0.00 0.00 4.09
1887 1989 3.878237 TCCCTCGTCCTGTCATATACT 57.122 47.619 0.00 0.00 0.00 2.12
1890 1992 5.068636 TCCCTCGTCCTGTCATATACTTAC 58.931 45.833 0.00 0.00 0.00 2.34
1891 1993 5.071370 CCCTCGTCCTGTCATATACTTACT 58.929 45.833 0.00 0.00 0.00 2.24
1934 2038 2.507407 TTTTGGCCACCATCTACTCC 57.493 50.000 3.88 0.00 31.53 3.85
1935 2039 0.623723 TTTGGCCACCATCTACTCCC 59.376 55.000 3.88 0.00 31.53 4.30
1936 2040 0.253160 TTGGCCACCATCTACTCCCT 60.253 55.000 3.88 0.00 31.53 4.20
1937 2041 0.691078 TGGCCACCATCTACTCCCTC 60.691 60.000 0.00 0.00 0.00 4.30
1938 2042 1.411651 GGCCACCATCTACTCCCTCC 61.412 65.000 0.00 0.00 0.00 4.30
1939 2043 1.749334 GCCACCATCTACTCCCTCCG 61.749 65.000 0.00 0.00 0.00 4.63
1940 2044 0.397254 CCACCATCTACTCCCTCCGT 60.397 60.000 0.00 0.00 0.00 4.69
1941 2045 1.486211 CACCATCTACTCCCTCCGTT 58.514 55.000 0.00 0.00 0.00 4.44
1942 2046 1.409427 CACCATCTACTCCCTCCGTTC 59.591 57.143 0.00 0.00 0.00 3.95
1943 2047 1.041437 CCATCTACTCCCTCCGTTCC 58.959 60.000 0.00 0.00 0.00 3.62
1944 2048 1.688311 CCATCTACTCCCTCCGTTCCA 60.688 57.143 0.00 0.00 0.00 3.53
1945 2049 2.108168 CATCTACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
1946 2050 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
1947 2051 2.829023 TCTACTCCCTCCGTTCCAAAT 58.171 47.619 0.00 0.00 0.00 2.32
1948 2052 3.178865 TCTACTCCCTCCGTTCCAAATT 58.821 45.455 0.00 0.00 0.00 1.82
1949 2053 4.355549 TCTACTCCCTCCGTTCCAAATTA 58.644 43.478 0.00 0.00 0.00 1.40
1950 2054 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1951 2055 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1952 2056 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
1953 2057 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
1954 2058 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
1955 2059 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
1956 2060 4.324267 CCTCCGTTCCAAATTACTTGTCT 58.676 43.478 0.00 0.00 32.65 3.41
1957 2061 4.760204 CCTCCGTTCCAAATTACTTGTCTT 59.240 41.667 0.00 0.00 32.65 3.01
1958 2062 5.334879 CCTCCGTTCCAAATTACTTGTCTTG 60.335 44.000 0.00 0.00 32.65 3.02
1959 2063 4.517453 TCCGTTCCAAATTACTTGTCTTGG 59.483 41.667 0.00 0.00 39.80 3.61
1960 2064 4.517453 CCGTTCCAAATTACTTGTCTTGGA 59.483 41.667 0.00 0.00 44.32 3.53
1961 2065 5.183140 CCGTTCCAAATTACTTGTCTTGGAT 59.817 40.000 3.38 0.00 45.10 3.41
1962 2066 6.294508 CCGTTCCAAATTACTTGTCTTGGATT 60.295 38.462 3.38 0.00 45.10 3.01
1963 2067 7.145323 CGTTCCAAATTACTTGTCTTGGATTT 58.855 34.615 3.38 0.00 45.10 2.17
1964 2068 7.114811 CGTTCCAAATTACTTGTCTTGGATTTG 59.885 37.037 3.38 0.00 45.10 2.32
1965 2069 7.595819 TCCAAATTACTTGTCTTGGATTTGT 57.404 32.000 0.00 0.00 41.83 2.83
1966 2070 7.657336 TCCAAATTACTTGTCTTGGATTTGTC 58.343 34.615 0.00 0.00 41.83 3.18
1967 2071 7.505585 TCCAAATTACTTGTCTTGGATTTGTCT 59.494 33.333 0.00 0.00 41.83 3.41
1968 2072 8.792633 CCAAATTACTTGTCTTGGATTTGTCTA 58.207 33.333 0.00 0.00 40.72 2.59
1969 2073 9.831737 CAAATTACTTGTCTTGGATTTGTCTAG 57.168 33.333 0.00 0.00 32.62 2.43
1970 2074 9.793259 AAATTACTTGTCTTGGATTTGTCTAGA 57.207 29.630 0.00 0.00 0.00 2.43
1971 2075 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
1973 2077 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
1974 2078 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
1975 2079 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
1976 2080 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
1977 2081 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
1978 2082 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
1979 2083 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
1980 2084 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
1981 2085 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
2013 2117 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
2014 2118 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
2015 2119 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
2016 2120 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
2017 2121 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
2018 2122 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
2019 2123 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
2020 2124 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
2021 2125 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
2022 2126 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
2023 2127 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
2025 2129 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
2026 2130 9.793259 TCTAGACAAATCCAAGACAAGTAATTT 57.207 29.630 0.00 0.00 0.00 1.82
2027 2131 9.831737 CTAGACAAATCCAAGACAAGTAATTTG 57.168 33.333 0.00 0.00 42.68 2.32
2028 2132 7.661040 AGACAAATCCAAGACAAGTAATTTGG 58.339 34.615 9.60 0.00 41.25 3.28
2064 2168 2.742053 GTTGGAACGAGCATGTATGTGT 59.258 45.455 0.00 0.00 0.00 3.72
2067 2171 3.262420 GGAACGAGCATGTATGTGTTCT 58.738 45.455 17.60 0.42 37.06 3.01
2090 2495 4.573900 AGATTTCGCATGGATCCAGTATC 58.426 43.478 21.33 14.42 0.00 2.24
2095 2500 6.850752 TTCGCATGGATCCAGTATCTATTA 57.149 37.500 21.33 0.00 33.78 0.98
2099 2504 7.067129 TCGCATGGATCCAGTATCTATTACTAC 59.933 40.741 21.33 0.00 39.19 2.73
2100 2505 7.067615 CGCATGGATCCAGTATCTATTACTACT 59.932 40.741 21.33 0.00 39.19 2.57
2101 2506 9.409918 GCATGGATCCAGTATCTATTACTACTA 57.590 37.037 21.33 0.00 39.19 1.82
2153 2570 5.644206 TCTGCTACTATATCGATCAGTGACC 59.356 44.000 18.27 9.59 0.00 4.02
2159 2576 5.650266 ACTATATCGATCAGTGACCTCATCC 59.350 44.000 0.00 0.00 0.00 3.51
2188 2605 4.400845 CAAAATCTGCAGTGATCTTCGTG 58.599 43.478 14.67 0.00 0.00 4.35
2239 2676 0.944386 GAACAACCGAGAGCAAAGCA 59.056 50.000 0.00 0.00 0.00 3.91
2274 2712 3.154710 GGGAAAAGATTTGACGACCCTT 58.845 45.455 0.00 0.00 33.99 3.95
2289 2728 4.039366 ACGACCCTTCCTTTATCTATGCTC 59.961 45.833 0.00 0.00 0.00 4.26
2417 2869 2.815211 CGGTGCTGTCATGGGTCG 60.815 66.667 0.00 0.00 0.00 4.79
2457 2909 1.298859 CCACTGGCCGCTTCTGTTAC 61.299 60.000 0.00 0.00 0.00 2.50
2492 2944 1.654105 GTCGGTTGCTCAATACGTCAG 59.346 52.381 0.00 0.00 0.00 3.51
2494 2946 2.488937 TCGGTTGCTCAATACGTCAGTA 59.511 45.455 0.00 0.00 37.24 2.74
2622 3130 1.653609 TCGTCATGAGTCGCGATTTTG 59.346 47.619 14.06 10.54 0.00 2.44
2635 3143 3.543494 CGCGATTTTGCTTTTGACCTATG 59.457 43.478 0.00 0.00 0.00 2.23
2663 3183 4.819630 GTCATGGGTCGCCATTTTCTATTA 59.180 41.667 0.00 0.00 0.00 0.98
2664 3184 4.819630 TCATGGGTCGCCATTTTCTATTAC 59.180 41.667 0.00 0.00 0.00 1.89
2666 3186 4.196193 TGGGTCGCCATTTTCTATTACAG 58.804 43.478 0.00 0.00 0.00 2.74
2670 3190 6.316890 GGGTCGCCATTTTCTATTACAGTTTA 59.683 38.462 0.00 0.00 0.00 2.01
2671 3191 7.407337 GGTCGCCATTTTCTATTACAGTTTAG 58.593 38.462 0.00 0.00 0.00 1.85
2672 3192 7.065443 GGTCGCCATTTTCTATTACAGTTTAGT 59.935 37.037 0.00 0.00 0.00 2.24
2673 3193 8.114905 GTCGCCATTTTCTATTACAGTTTAGTC 58.885 37.037 0.00 0.00 0.00 2.59
2674 3194 7.009815 TCGCCATTTTCTATTACAGTTTAGTCG 59.990 37.037 0.00 0.00 0.00 4.18
2675 3195 7.009815 CGCCATTTTCTATTACAGTTTAGTCGA 59.990 37.037 0.00 0.00 0.00 4.20
2676 3196 8.827677 GCCATTTTCTATTACAGTTTAGTCGAT 58.172 33.333 0.00 0.00 0.00 3.59
2721 3251 5.571784 TTTGATCCTTGCTGATGATGAAC 57.428 39.130 0.00 0.00 0.00 3.18
2763 3293 2.706190 ACAGCTGGAACCACTTCTACTT 59.294 45.455 19.93 0.00 0.00 2.24
2840 3606 3.256704 TCCTTCCTACAACCACTCCAAT 58.743 45.455 0.00 0.00 0.00 3.16
2877 3672 4.965200 AGCCTCAAATCCTATGGTCTAC 57.035 45.455 0.00 0.00 0.00 2.59
3070 3887 7.605410 TTGCTAAACTGCTGTTTATAGTACC 57.395 36.000 23.85 11.92 44.57 3.34
3091 4014 0.648441 GCGTTCGGCGTGATAATGAA 59.352 50.000 6.85 0.00 43.66 2.57
3095 4018 1.286501 TCGGCGTGATAATGAAGTGC 58.713 50.000 6.85 0.00 0.00 4.40
3260 4195 4.504916 CACCGAGGCAGCCGAGAG 62.505 72.222 5.55 0.00 0.00 3.20
3261 4196 4.742649 ACCGAGGCAGCCGAGAGA 62.743 66.667 5.55 0.00 0.00 3.10
3271 4206 1.536766 CAGCCGAGAGATTTTTGTGCA 59.463 47.619 0.00 0.00 0.00 4.57
3278 4213 1.537202 GAGATTTTTGTGCAGGCTCGT 59.463 47.619 0.00 0.00 0.00 4.18
3279 4214 1.537202 AGATTTTTGTGCAGGCTCGTC 59.463 47.619 0.00 0.00 0.00 4.20
3280 4215 1.537202 GATTTTTGTGCAGGCTCGTCT 59.463 47.619 0.00 0.00 0.00 4.18
3321 4269 3.650950 GCCCCCAAGAGCCACAGA 61.651 66.667 0.00 0.00 0.00 3.41
3335 4287 1.034838 CACAGACCTCTCCCTCCTCG 61.035 65.000 0.00 0.00 0.00 4.63
3458 4414 0.034337 TACAAGGAACACGACAGCCC 59.966 55.000 0.00 0.00 0.00 5.19
3490 4446 4.103153 TCGCCATATTCTCTCCTCCAAAAT 59.897 41.667 0.00 0.00 0.00 1.82
3541 4506 4.344679 AGATCAGATCTGGGAATCACTCAC 59.655 45.833 22.42 0.00 38.44 3.51
3553 4518 1.897473 TCACTCACCCATCCATCCAT 58.103 50.000 0.00 0.00 0.00 3.41
3554 4519 1.770658 TCACTCACCCATCCATCCATC 59.229 52.381 0.00 0.00 0.00 3.51
3555 4520 1.143813 ACTCACCCATCCATCCATCC 58.856 55.000 0.00 0.00 0.00 3.51
3556 4521 1.142936 CTCACCCATCCATCCATCCA 58.857 55.000 0.00 0.00 0.00 3.41
3557 4522 1.709115 CTCACCCATCCATCCATCCAT 59.291 52.381 0.00 0.00 0.00 3.41
3558 4523 1.706866 TCACCCATCCATCCATCCATC 59.293 52.381 0.00 0.00 0.00 3.51
3559 4524 1.078955 ACCCATCCATCCATCCATCC 58.921 55.000 0.00 0.00 0.00 3.51
3560 4525 1.078115 CCCATCCATCCATCCATCCA 58.922 55.000 0.00 0.00 0.00 3.41
3588 4553 5.098211 CGCCTTTTCTCCTTTTCAATGATC 58.902 41.667 0.00 0.00 0.00 2.92
3605 4570 0.835941 ATCCAGAGATGCCTTTCGCT 59.164 50.000 0.00 0.00 38.78 4.93
3607 4572 1.150567 CCAGAGATGCCTTTCGCTCG 61.151 60.000 0.00 0.00 38.78 5.03
3608 4573 1.520342 AGAGATGCCTTTCGCTCGC 60.520 57.895 0.00 0.00 38.78 5.03
3609 4574 2.512515 AGATGCCTTTCGCTCGCC 60.513 61.111 0.00 0.00 38.78 5.54
3610 4575 3.577313 GATGCCTTTCGCTCGCCC 61.577 66.667 0.00 0.00 38.78 6.13
3611 4576 4.101448 ATGCCTTTCGCTCGCCCT 62.101 61.111 0.00 0.00 38.78 5.19
3612 4577 3.628646 ATGCCTTTCGCTCGCCCTT 62.629 57.895 0.00 0.00 38.78 3.95
3613 4578 3.056328 GCCTTTCGCTCGCCCTTT 61.056 61.111 0.00 0.00 0.00 3.11
3614 4579 2.870372 CCTTTCGCTCGCCCTTTG 59.130 61.111 0.00 0.00 0.00 2.77
3615 4580 1.966451 CCTTTCGCTCGCCCTTTGT 60.966 57.895 0.00 0.00 0.00 2.83
3705 4671 2.554032 GCCTAATCGGTCCAATCCAATG 59.446 50.000 0.00 0.00 34.25 2.82
3766 4732 4.932799 TGTTTCACATCACAACTATACCCG 59.067 41.667 0.00 0.00 0.00 5.28
3772 4738 1.136305 TCACAACTATACCCGCTGAGC 59.864 52.381 0.00 0.00 0.00 4.26
3784 4753 1.446966 GCTGAGCGAGAGGAACACC 60.447 63.158 0.00 0.00 0.00 4.16
3785 4754 1.882989 GCTGAGCGAGAGGAACACCT 61.883 60.000 0.00 0.00 36.65 4.00
3791 4760 1.784525 CGAGAGGAACACCTTCACAC 58.215 55.000 0.00 0.00 33.73 3.82
3800 4769 2.260869 ACCTTCACACGCCACATGC 61.261 57.895 0.00 0.00 0.00 4.06
3915 4899 4.469657 GACCCATATCCACATTTAAGGCA 58.530 43.478 0.00 0.00 0.00 4.75
3948 4932 2.361610 AAAGGGCGGCATGTGGAG 60.362 61.111 12.47 0.00 0.00 3.86
3961 4945 1.126488 TGTGGAGGGCAGATCAGATC 58.874 55.000 1.64 1.64 0.00 2.75
3991 4975 0.828022 TGCGGTCCGATGGATAAACT 59.172 50.000 17.49 0.00 32.73 2.66
4025 5009 2.479837 CTAGCGTCACAAACCACAAGA 58.520 47.619 0.00 0.00 0.00 3.02
4072 5056 5.438761 TGACAGATGTACGTATCAGGATG 57.561 43.478 0.00 2.86 37.54 3.51
4157 5144 1.153086 GCACCTGCTCCCATGGTAG 60.153 63.158 11.73 5.27 38.21 3.18
4168 5155 5.193679 GCTCCCATGGTAGAATTTGTACTT 58.806 41.667 8.83 0.00 0.00 2.24
4195 5182 4.511454 CCCATCGACACATAACTATGGTTG 59.489 45.833 4.47 0.00 38.00 3.77
4242 5230 0.668535 GAGTTGGGTTGTTGGTGCTC 59.331 55.000 0.00 0.00 0.00 4.26
4277 5265 1.340017 CCCCGTGATGATGTCCTTGTT 60.340 52.381 0.00 0.00 0.00 2.83
4291 5279 8.081633 TGATGTCCTTGTTTTTATTTACTGCAG 58.918 33.333 13.48 13.48 0.00 4.41
4305 5293 5.503662 TTACTGCAGCAATAATGTCATGG 57.496 39.130 15.27 0.00 0.00 3.66
4337 5339 9.612066 TTGATATGCTGTCAAATTGTACTATCA 57.388 29.630 0.00 0.00 32.98 2.15
4448 5450 2.103373 GTATGGACTGCTCTCTGGACA 58.897 52.381 0.00 0.00 0.00 4.02
4567 5580 5.776358 TGGGCAGAATTAAACAGGGATTAT 58.224 37.500 0.00 0.00 0.00 1.28
4599 5616 8.681486 ATGATATACACTTGAGCATTGCTAAA 57.319 30.769 11.96 9.88 39.88 1.85
4607 5624 5.244626 ACTTGAGCATTGCTAAACATTCCTT 59.755 36.000 11.96 0.00 39.88 3.36
4947 8309 7.384115 GGCCCAAGAAAACTAGAATTTGTAAAC 59.616 37.037 0.00 0.00 0.00 2.01
4969 8331 6.699575 ACATGATAAACTGGCCATAAACTC 57.300 37.500 5.51 1.51 0.00 3.01
4973 8335 7.156876 TGATAAACTGGCCATAAACTCAAAG 57.843 36.000 5.51 0.00 0.00 2.77
4981 8343 5.240623 TGGCCATAAACTCAAAGTAACTGTG 59.759 40.000 0.00 0.00 0.00 3.66
5035 8402 0.811616 AAATGCCAGGATCGCTCGAC 60.812 55.000 0.00 0.00 0.00 4.20
5147 8548 7.629157 TGACACCATAAATCCTGATGTTCTTA 58.371 34.615 0.00 0.00 0.00 2.10
5363 8771 3.885297 CCATGAAGAAATACGGGCAGAAT 59.115 43.478 0.00 0.00 0.00 2.40
5454 8863 5.556355 CAAGCATTGCTGATTCACTCTTA 57.444 39.130 12.82 0.00 40.39 2.10
5466 8875 4.503741 TTCACTCTTATGTGCTTTTGCC 57.496 40.909 0.00 0.00 46.87 4.52
5503 8912 2.514592 CCTGCTACATGGGCACGG 60.515 66.667 10.80 11.95 35.71 4.94
5577 8986 2.366533 CAGGTGCTGCTCATTTCATCT 58.633 47.619 0.00 0.00 0.00 2.90
5585 8994 4.442612 GCTGCTCATTTCATCTACTCAGGA 60.443 45.833 0.00 0.00 0.00 3.86
5587 8996 6.244552 TGCTCATTTCATCTACTCAGGAAT 57.755 37.500 0.00 0.00 0.00 3.01
5609 9022 7.065923 GGAATTTTTGGTCAAGTAGCTACTAGG 59.934 40.741 26.29 20.32 34.99 3.02
5677 9092 1.021390 GTGCGGACCAGAATGACAGG 61.021 60.000 0.00 0.00 39.69 4.00
5727 9142 2.994578 GGAACGGTAAGAGTTTCAGAGC 59.005 50.000 0.00 0.00 31.14 4.09
5771 9204 2.625790 TGCCCAACGATTTGTTAGCTTT 59.374 40.909 0.00 0.00 39.29 3.51
5775 9208 4.679654 CCCAACGATTTGTTAGCTTTGTTC 59.320 41.667 0.00 0.00 39.29 3.18
5924 9384 6.407865 CCCATTATGTCCCATGTGCATTTAAA 60.408 38.462 0.00 0.00 0.00 1.52
5934 9418 7.041508 TCCCATGTGCATTTAAAAATGTTGTTC 60.042 33.333 14.98 1.53 45.77 3.18
5937 9421 7.798596 TGTGCATTTAAAAATGTTGTTCCAT 57.201 28.000 14.98 0.00 45.77 3.41
6142 9626 6.735556 ACACCTTCTTCATATGGGATTTTCT 58.264 36.000 2.13 0.00 0.00 2.52
6162 9646 8.812147 TTTTCTGTGTACTCATACTACAGTTG 57.188 34.615 0.00 0.00 39.24 3.16
6232 9716 1.737793 GTGGTTTGGAGGTATTGCTCG 59.262 52.381 0.00 0.00 0.00 5.03
6285 9772 8.455903 TGATGAGATTTCTGAAACTGAAACTT 57.544 30.769 4.73 0.00 34.99 2.66
6492 9979 5.413833 AGTGCTCATTCTTAACAATCCACTG 59.586 40.000 0.00 0.00 0.00 3.66
6522 10009 4.221262 CCAGGGTTTCATCATCACAACAAT 59.779 41.667 0.00 0.00 0.00 2.71
6533 10020 6.698008 TCATCACAACAATTTCTGTCTTGT 57.302 33.333 0.00 0.00 37.23 3.16
6726 10217 2.003072 AGGTGAATTGAGGAATGGGGT 58.997 47.619 0.00 0.00 0.00 4.95
6950 10449 2.415491 GCAAAAAGGGTCGTTGCTATCC 60.415 50.000 0.53 0.00 43.40 2.59
6954 10453 1.477553 AGGGTCGTTGCTATCCGTAA 58.522 50.000 0.00 0.00 0.00 3.18
6963 10462 3.520290 TGCTATCCGTAACTGAACTGG 57.480 47.619 0.00 0.00 0.00 4.00
7037 11647 2.882927 ATACAGATTGCCGCGTAGAA 57.117 45.000 4.92 0.00 0.00 2.10
7041 11651 3.527533 ACAGATTGCCGCGTAGAAATTA 58.472 40.909 4.92 0.00 0.00 1.40
7078 11690 0.682292 GAGCATACCCAGGTCTAGCC 59.318 60.000 0.00 0.00 37.58 3.93
7297 14384 1.821759 CGGCGGCATGTTTATCCCA 60.822 57.895 10.53 0.00 0.00 4.37
7460 14611 1.296715 CCTAAGAAGGCCACGTGCT 59.703 57.895 10.91 0.00 40.92 4.40
7462 14613 0.037326 CTAAGAAGGCCACGTGCTGA 60.037 55.000 10.91 0.00 40.92 4.26
7465 14616 2.591715 AAGGCCACGTGCTGACAC 60.592 61.111 10.91 0.00 43.76 3.67
7477 14628 1.226974 CTGACACGGCCCGAGTATG 60.227 63.158 11.71 0.00 30.02 2.39
7481 14632 0.966875 ACACGGCCCGAGTATGTACA 60.967 55.000 11.71 0.00 0.00 2.90
7507 14658 2.187946 CAGGCTCACCACGGATCC 59.812 66.667 0.00 0.00 39.06 3.36
7513 14664 0.826715 CTCACCACGGATCCTCATGT 59.173 55.000 10.75 0.00 0.00 3.21
7600 14751 7.227116 CGAAATCATGGCCCATCAATTTAAAAT 59.773 33.333 11.68 0.00 0.00 1.82
7606 14757 4.080638 GGCCCATCAATTTAAAATGACCCA 60.081 41.667 8.11 0.00 0.00 4.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
667 669 0.400213 TTCACGGAATGAACTGGCCT 59.600 50.000 3.32 0.00 42.62 5.19
784 786 9.331282 GCACCATTATTTTCTTCTAGTGATACT 57.669 33.333 0.00 0.00 0.00 2.12
785 787 8.560374 GGCACCATTATTTTCTTCTAGTGATAC 58.440 37.037 0.00 0.00 0.00 2.24
789 808 6.150976 TGTGGCACCATTATTTTCTTCTAGTG 59.849 38.462 16.26 0.00 0.00 2.74
977 1000 4.277593 CCTAGCCGCTCTGCCGAG 62.278 72.222 0.00 0.00 40.35 4.63
980 1003 4.906792 CTGCCTAGCCGCTCTGCC 62.907 72.222 0.00 0.00 0.00 4.85
1206 1239 2.424684 AAAGACAAGAGGGAGGAGGT 57.575 50.000 0.00 0.00 0.00 3.85
1207 1240 2.026729 GGAAAAGACAAGAGGGAGGAGG 60.027 54.545 0.00 0.00 0.00 4.30
1208 1241 2.909662 AGGAAAAGACAAGAGGGAGGAG 59.090 50.000 0.00 0.00 0.00 3.69
1209 1242 2.907042 GAGGAAAAGACAAGAGGGAGGA 59.093 50.000 0.00 0.00 0.00 3.71
1210 1243 2.026729 GGAGGAAAAGACAAGAGGGAGG 60.027 54.545 0.00 0.00 0.00 4.30
1212 1245 2.907042 GAGGAGGAAAAGACAAGAGGGA 59.093 50.000 0.00 0.00 0.00 4.20
1213 1246 2.354203 CGAGGAGGAAAAGACAAGAGGG 60.354 54.545 0.00 0.00 0.00 4.30
1238 1271 1.566018 GCATGCTATACCGGGCGAAC 61.566 60.000 11.37 0.00 0.00 3.95
1385 1435 3.325605 TCCTACTCCTACTCCTACTCCC 58.674 54.545 0.00 0.00 0.00 4.30
1394 1444 5.608015 CCTACTTCCTACTCCTACTCCTACT 59.392 48.000 0.00 0.00 0.00 2.57
1396 1446 5.797305 TCCTACTTCCTACTCCTACTCCTA 58.203 45.833 0.00 0.00 0.00 2.94
1399 1449 5.635278 ACTCCTACTTCCTACTCCTACTC 57.365 47.826 0.00 0.00 0.00 2.59
1400 1450 5.608015 CCTACTCCTACTTCCTACTCCTACT 59.392 48.000 0.00 0.00 0.00 2.57
1401 1451 5.606329 TCCTACTCCTACTTCCTACTCCTAC 59.394 48.000 0.00 0.00 0.00 3.18
1402 1452 5.797305 TCCTACTCCTACTTCCTACTCCTA 58.203 45.833 0.00 0.00 0.00 2.94
1403 1453 4.644010 TCCTACTCCTACTTCCTACTCCT 58.356 47.826 0.00 0.00 0.00 3.69
1404 1454 5.103982 ACTTCCTACTCCTACTTCCTACTCC 60.104 48.000 0.00 0.00 0.00 3.85
1405 1455 6.005066 ACTTCCTACTCCTACTTCCTACTC 57.995 45.833 0.00 0.00 0.00 2.59
1406 1456 6.101588 CCTACTTCCTACTCCTACTTCCTACT 59.898 46.154 0.00 0.00 0.00 2.57
1407 1457 6.298361 CCTACTTCCTACTCCTACTTCCTAC 58.702 48.000 0.00 0.00 0.00 3.18
1408 1458 5.372066 CCCTACTTCCTACTCCTACTTCCTA 59.628 48.000 0.00 0.00 0.00 2.94
1409 1459 4.168479 CCCTACTTCCTACTCCTACTTCCT 59.832 50.000 0.00 0.00 0.00 3.36
1410 1460 4.472496 CCCTACTTCCTACTCCTACTTCC 58.528 52.174 0.00 0.00 0.00 3.46
1411 1461 4.079269 ACCCCTACTTCCTACTCCTACTTC 60.079 50.000 0.00 0.00 0.00 3.01
1412 1462 3.863538 ACCCCTACTTCCTACTCCTACTT 59.136 47.826 0.00 0.00 0.00 2.24
1413 1463 3.483083 ACCCCTACTTCCTACTCCTACT 58.517 50.000 0.00 0.00 0.00 2.57
1414 1464 3.969466 ACCCCTACTTCCTACTCCTAC 57.031 52.381 0.00 0.00 0.00 3.18
1415 1465 3.986134 CCTACCCCTACTTCCTACTCCTA 59.014 52.174 0.00 0.00 0.00 2.94
1416 1466 2.790585 CCTACCCCTACTTCCTACTCCT 59.209 54.545 0.00 0.00 0.00 3.69
1417 1467 2.158340 CCCTACCCCTACTTCCTACTCC 60.158 59.091 0.00 0.00 0.00 3.85
1432 1482 1.188863 TCTTTACGGTCAGCCCTACC 58.811 55.000 0.00 0.00 0.00 3.18
1467 1517 0.452987 CAAAGCCACCATCATCACCG 59.547 55.000 0.00 0.00 0.00 4.94
1473 1523 2.283821 GCCCCAAAGCCACCATCA 60.284 61.111 0.00 0.00 0.00 3.07
1474 1524 3.451894 CGCCCCAAAGCCACCATC 61.452 66.667 0.00 0.00 0.00 3.51
1492 1542 3.432326 GCATATGAACGTCCCTTTCCTCT 60.432 47.826 6.97 0.00 0.00 3.69
1493 1543 2.872858 GCATATGAACGTCCCTTTCCTC 59.127 50.000 6.97 0.00 0.00 3.71
1573 1626 1.946475 GAGGGAGCGGCTTAACGACT 61.946 60.000 2.97 0.00 35.47 4.18
1635 1692 1.610379 CAAGGGAAGGGGCCAAAGG 60.610 63.158 4.39 0.00 0.00 3.11
1700 1758 1.583495 GGAAAACCGTACCTGCAGCC 61.583 60.000 8.66 0.00 0.00 4.85
1737 1797 6.016610 CCGGACAGAAATTGTAAGAAAAAGGA 60.017 38.462 0.00 0.00 41.05 3.36
1739 1799 5.629435 GCCGGACAGAAATTGTAAGAAAAAG 59.371 40.000 5.05 0.00 41.05 2.27
1761 1821 4.412207 CAGCCAAAAGAAAATACGTAGCC 58.588 43.478 0.08 0.00 0.00 3.93
1762 1822 4.155280 TCCAGCCAAAAGAAAATACGTAGC 59.845 41.667 0.08 0.00 0.00 3.58
1764 1824 5.064558 TGTCCAGCCAAAAGAAAATACGTA 58.935 37.500 0.00 0.00 0.00 3.57
1786 1846 8.200120 TCTTATCGCCAAATATCTCATCCTATG 58.800 37.037 0.00 0.00 0.00 2.23
1846 1948 0.604578 GCAGAGAAAAATGCCCAGCA 59.395 50.000 0.00 0.00 44.86 4.41
1917 2021 0.253160 AGGGAGTAGATGGTGGCCAA 60.253 55.000 7.24 0.00 36.95 4.52
1918 2022 0.691078 GAGGGAGTAGATGGTGGCCA 60.691 60.000 0.00 0.00 38.19 5.36
1920 2024 1.749334 CGGAGGGAGTAGATGGTGGC 61.749 65.000 0.00 0.00 0.00 5.01
1921 2025 0.397254 ACGGAGGGAGTAGATGGTGG 60.397 60.000 0.00 0.00 0.00 4.61
1923 2027 1.688627 GGAACGGAGGGAGTAGATGGT 60.689 57.143 0.00 0.00 0.00 3.55
1925 2029 1.776662 TGGAACGGAGGGAGTAGATG 58.223 55.000 0.00 0.00 0.00 2.90
1926 2030 2.544844 TTGGAACGGAGGGAGTAGAT 57.455 50.000 0.00 0.00 0.00 1.98
1927 2031 2.314071 TTTGGAACGGAGGGAGTAGA 57.686 50.000 0.00 0.00 0.00 2.59
1928 2032 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
1930 2034 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1931 2035 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
1932 2036 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
1933 2037 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
1934 2038 4.324267 AGACAAGTAATTTGGAACGGAGG 58.676 43.478 0.00 0.00 41.25 4.30
1935 2039 5.334879 CCAAGACAAGTAATTTGGAACGGAG 60.335 44.000 0.00 0.00 42.05 4.63
1936 2040 4.517453 CCAAGACAAGTAATTTGGAACGGA 59.483 41.667 0.00 0.00 42.05 4.69
1937 2041 4.517453 TCCAAGACAAGTAATTTGGAACGG 59.483 41.667 2.52 0.00 44.38 4.44
1938 2042 5.682943 TCCAAGACAAGTAATTTGGAACG 57.317 39.130 2.52 0.00 44.38 3.95
1942 2046 7.661040 AGACAAATCCAAGACAAGTAATTTGG 58.339 34.615 9.60 0.00 41.25 3.28
1943 2047 9.831737 CTAGACAAATCCAAGACAAGTAATTTG 57.168 33.333 0.00 0.00 42.68 2.32
1944 2048 9.793259 TCTAGACAAATCCAAGACAAGTAATTT 57.207 29.630 0.00 0.00 0.00 1.82
1945 2049 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
1947 2051 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
1948 2052 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
1949 2053 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
1950 2054 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
1951 2055 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
1952 2056 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
1953 2057 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
1954 2058 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
1955 2059 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
1956 2060 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
1957 2061 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
1989 2093 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
1990 2094 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
1991 2095 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
1992 2096 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
1993 2097 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
1994 2098 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
1995 2099 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
1996 2100 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
1997 2101 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
1999 2103 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
2000 2104 9.793259 AAATTACTTGTCTTGGATTTGTCTAGA 57.207 29.630 0.00 0.00 0.00 2.43
2001 2105 9.831737 CAAATTACTTGTCTTGGATTTGTCTAG 57.168 33.333 0.00 0.00 32.62 2.43
2002 2106 8.792633 CCAAATTACTTGTCTTGGATTTGTCTA 58.207 33.333 0.00 0.00 40.72 2.59
2003 2107 7.505585 TCCAAATTACTTGTCTTGGATTTGTCT 59.494 33.333 0.00 0.00 41.83 3.41
2004 2108 7.657336 TCCAAATTACTTGTCTTGGATTTGTC 58.343 34.615 0.00 0.00 41.83 3.18
2005 2109 7.595819 TCCAAATTACTTGTCTTGGATTTGT 57.404 32.000 0.00 0.00 41.83 2.83
2006 2110 7.925483 TGTTCCAAATTACTTGTCTTGGATTTG 59.075 33.333 3.38 0.00 45.10 2.32
2007 2111 8.017418 TGTTCCAAATTACTTGTCTTGGATTT 57.983 30.769 3.38 0.00 45.10 2.17
2008 2112 7.595819 TGTTCCAAATTACTTGTCTTGGATT 57.404 32.000 3.38 0.00 45.10 3.01
2009 2113 7.595819 TTGTTCCAAATTACTTGTCTTGGAT 57.404 32.000 3.38 0.00 45.10 3.41
2010 2114 7.262048 GTTTGTTCCAAATTACTTGTCTTGGA 58.738 34.615 0.00 0.00 44.32 3.53
2011 2115 6.198216 CGTTTGTTCCAAATTACTTGTCTTGG 59.802 38.462 0.00 0.00 39.80 3.61
2012 2116 6.198216 CCGTTTGTTCCAAATTACTTGTCTTG 59.802 38.462 0.00 0.00 32.65 3.02
2013 2117 6.095720 TCCGTTTGTTCCAAATTACTTGTCTT 59.904 34.615 0.00 0.00 32.65 3.01
2014 2118 5.591067 TCCGTTTGTTCCAAATTACTTGTCT 59.409 36.000 0.00 0.00 32.65 3.41
2015 2119 5.823353 TCCGTTTGTTCCAAATTACTTGTC 58.177 37.500 0.00 0.00 32.65 3.18
2016 2120 5.358725 ACTCCGTTTGTTCCAAATTACTTGT 59.641 36.000 0.00 0.00 32.65 3.16
2017 2121 5.827666 ACTCCGTTTGTTCCAAATTACTTG 58.172 37.500 0.00 0.00 34.52 3.16
2018 2122 7.229907 ACATACTCCGTTTGTTCCAAATTACTT 59.770 33.333 0.00 0.00 0.00 2.24
2019 2123 6.713450 ACATACTCCGTTTGTTCCAAATTACT 59.287 34.615 0.00 0.00 0.00 2.24
2020 2124 6.905578 ACATACTCCGTTTGTTCCAAATTAC 58.094 36.000 0.00 0.00 0.00 1.89
2021 2125 7.364200 CAACATACTCCGTTTGTTCCAAATTA 58.636 34.615 0.86 0.00 36.04 1.40
2022 2126 6.212955 CAACATACTCCGTTTGTTCCAAATT 58.787 36.000 0.86 0.00 36.04 1.82
2023 2127 5.278758 CCAACATACTCCGTTTGTTCCAAAT 60.279 40.000 0.86 0.00 36.04 2.32
2024 2128 4.036971 CCAACATACTCCGTTTGTTCCAAA 59.963 41.667 0.86 0.00 36.04 3.28
2025 2129 3.566322 CCAACATACTCCGTTTGTTCCAA 59.434 43.478 0.86 0.00 36.04 3.53
2026 2130 3.142951 CCAACATACTCCGTTTGTTCCA 58.857 45.455 0.86 0.00 36.04 3.53
2027 2131 3.404899 TCCAACATACTCCGTTTGTTCC 58.595 45.455 0.86 0.00 36.04 3.62
2028 2132 4.609783 CGTTCCAACATACTCCGTTTGTTC 60.610 45.833 0.86 0.00 36.04 3.18
2029 2133 3.249080 CGTTCCAACATACTCCGTTTGTT 59.751 43.478 0.00 0.00 37.98 2.83
2030 2134 2.803956 CGTTCCAACATACTCCGTTTGT 59.196 45.455 0.00 0.00 29.67 2.83
2031 2135 3.061322 TCGTTCCAACATACTCCGTTTG 58.939 45.455 0.00 0.00 0.00 2.93
2032 2136 3.323243 CTCGTTCCAACATACTCCGTTT 58.677 45.455 0.00 0.00 0.00 3.60
2033 2137 2.929592 GCTCGTTCCAACATACTCCGTT 60.930 50.000 0.00 0.00 0.00 4.44
2034 2138 1.403780 GCTCGTTCCAACATACTCCGT 60.404 52.381 0.00 0.00 0.00 4.69
2035 2139 1.278238 GCTCGTTCCAACATACTCCG 58.722 55.000 0.00 0.00 0.00 4.63
2036 2140 2.380084 TGCTCGTTCCAACATACTCC 57.620 50.000 0.00 0.00 0.00 3.85
2037 2141 3.262420 ACATGCTCGTTCCAACATACTC 58.738 45.455 0.00 0.00 0.00 2.59
2038 2142 3.334583 ACATGCTCGTTCCAACATACT 57.665 42.857 0.00 0.00 0.00 2.12
2039 2143 4.570772 ACATACATGCTCGTTCCAACATAC 59.429 41.667 0.00 0.00 0.00 2.39
2043 2147 2.742053 ACACATACATGCTCGTTCCAAC 59.258 45.455 0.00 0.00 0.00 3.77
2064 2168 4.101585 ACTGGATCCATGCGAAATCTAGAA 59.898 41.667 16.63 0.00 33.61 2.10
2067 2171 5.481824 AGATACTGGATCCATGCGAAATCTA 59.518 40.000 16.63 0.00 34.80 1.98
2090 2495 9.529823 TGGATCCCTGTGTTATAGTAGTAATAG 57.470 37.037 9.90 0.00 0.00 1.73
2095 2500 4.589374 GCTGGATCCCTGTGTTATAGTAGT 59.411 45.833 9.90 0.00 0.00 2.73
2099 2504 3.389329 ACTGCTGGATCCCTGTGTTATAG 59.611 47.826 9.90 0.00 0.00 1.31
2100 2505 3.384168 ACTGCTGGATCCCTGTGTTATA 58.616 45.455 9.90 0.00 0.00 0.98
2101 2506 2.200081 ACTGCTGGATCCCTGTGTTAT 58.800 47.619 9.90 0.00 0.00 1.89
2109 2514 4.096984 CAGAAACAAATACTGCTGGATCCC 59.903 45.833 9.90 0.00 0.00 3.85
2110 2515 5.240713 CAGAAACAAATACTGCTGGATCC 57.759 43.478 4.20 4.20 0.00 3.36
2239 2676 0.476771 TTTCCCTCTTCTTTGGGCGT 59.523 50.000 0.00 0.00 43.04 5.68
2274 2712 7.127955 AGGAAAAAGGAGAGCATAGATAAAGGA 59.872 37.037 0.00 0.00 0.00 3.36
2289 2728 6.276091 CCAACAGAGAAAAAGGAAAAAGGAG 58.724 40.000 0.00 0.00 0.00 3.69
2324 2763 2.487428 CGCGAGGAGAGGACAGTG 59.513 66.667 0.00 0.00 0.00 3.66
2325 2764 3.444805 GCGCGAGGAGAGGACAGT 61.445 66.667 12.10 0.00 0.00 3.55
2417 2869 1.140375 GGACCGGGTACGTGATGAC 59.860 63.158 6.32 0.00 38.78 3.06
2457 2909 0.242286 CCGACACACACAGAGAGGAG 59.758 60.000 0.00 0.00 0.00 3.69
2505 2981 5.548406 ACCAATGTACTAGGACTGTGTTTC 58.452 41.667 6.66 0.00 0.00 2.78
2508 2984 4.220821 CAGACCAATGTACTAGGACTGTGT 59.779 45.833 6.66 0.00 39.34 3.72
2509 2985 4.382040 CCAGACCAATGTACTAGGACTGTG 60.382 50.000 20.14 4.23 41.50 3.66
2510 2986 3.769844 CCAGACCAATGTACTAGGACTGT 59.230 47.826 20.14 0.00 41.50 3.55
2515 2991 3.197766 TGCTTCCAGACCAATGTACTAGG 59.802 47.826 0.00 0.00 0.00 3.02
2558 3034 3.460103 GACCCGCGAGAAATTATAACCA 58.540 45.455 8.23 0.00 0.00 3.67
2622 3130 2.742053 TGACGAAGCATAGGTCAAAAGC 59.258 45.455 0.00 0.00 37.72 3.51
2635 3143 3.195698 GGCGACCCATGACGAAGC 61.196 66.667 0.00 0.00 0.00 3.86
2684 3204 9.890352 GCAAGGATCAAATCAAATAGACTAATC 57.110 33.333 0.00 0.00 0.00 1.75
2685 3205 9.638176 AGCAAGGATCAAATCAAATAGACTAAT 57.362 29.630 0.00 0.00 0.00 1.73
2686 3206 8.896744 CAGCAAGGATCAAATCAAATAGACTAA 58.103 33.333 0.00 0.00 0.00 2.24
2687 3207 8.267183 TCAGCAAGGATCAAATCAAATAGACTA 58.733 33.333 0.00 0.00 0.00 2.59
2708 3238 3.127376 CACGAAATGGTTCATCATCAGCA 59.873 43.478 0.00 0.00 32.89 4.41
2709 3239 3.127548 ACACGAAATGGTTCATCATCAGC 59.872 43.478 0.00 0.00 32.89 4.26
2721 3251 2.773487 TCCACCTAACACACGAAATGG 58.227 47.619 0.00 0.00 0.00 3.16
2763 3293 0.891449 GATCTCCTCGCTGATCCCGA 60.891 60.000 5.60 5.60 34.60 5.14
2840 3606 1.529713 GCTTGAAACGGGGGTTGGA 60.530 57.895 0.00 0.00 0.00 3.53
3091 4014 2.421739 GTCAGTGTCACCGGCACT 59.578 61.111 0.00 3.97 46.86 4.40
3217 4146 2.590291 ACGCACCGCACAATGTCA 60.590 55.556 0.00 0.00 0.00 3.58
3219 4148 3.711842 CGACGCACCGCACAATGT 61.712 61.111 0.00 0.00 0.00 2.71
3250 4185 1.730446 GCACAAAAATCTCTCGGCTGC 60.730 52.381 0.00 0.00 0.00 5.25
3251 4186 1.536766 TGCACAAAAATCTCTCGGCTG 59.463 47.619 0.00 0.00 0.00 4.85
3252 4187 1.808945 CTGCACAAAAATCTCTCGGCT 59.191 47.619 0.00 0.00 0.00 5.52
3253 4188 1.135575 CCTGCACAAAAATCTCTCGGC 60.136 52.381 0.00 0.00 0.00 5.54
3254 4189 1.135575 GCCTGCACAAAAATCTCTCGG 60.136 52.381 0.00 0.00 0.00 4.63
3255 4190 1.808945 AGCCTGCACAAAAATCTCTCG 59.191 47.619 0.00 0.00 0.00 4.04
3256 4191 2.159599 CGAGCCTGCACAAAAATCTCTC 60.160 50.000 0.00 0.00 0.00 3.20
3257 4192 1.808945 CGAGCCTGCACAAAAATCTCT 59.191 47.619 0.00 0.00 0.00 3.10
3258 4193 1.537202 ACGAGCCTGCACAAAAATCTC 59.463 47.619 0.00 0.00 0.00 2.75
3259 4194 1.537202 GACGAGCCTGCACAAAAATCT 59.463 47.619 0.00 0.00 0.00 2.40
3260 4195 1.537202 AGACGAGCCTGCACAAAAATC 59.463 47.619 0.00 0.00 0.00 2.17
3261 4196 1.267806 CAGACGAGCCTGCACAAAAAT 59.732 47.619 0.00 0.00 0.00 1.82
3302 4237 3.933048 CTGTGGCTCTTGGGGGCAG 62.933 68.421 0.00 0.00 39.83 4.85
3321 4269 2.363147 GTGCGAGGAGGGAGAGGT 60.363 66.667 0.00 0.00 0.00 3.85
3436 4392 1.128692 GCTGTCGTGTTCCTTGTATGC 59.871 52.381 0.00 0.00 0.00 3.14
3490 4446 5.788533 TCAAGGAATAAAGGTTGGGTAGAGA 59.211 40.000 0.00 0.00 0.00 3.10
3541 4506 1.078115 TGGATGGATGGATGGATGGG 58.922 55.000 0.00 0.00 0.00 4.00
3553 4518 2.119484 AAAAGGCGTCCGTGGATGGA 62.119 55.000 10.03 0.00 35.04 3.41
3554 4519 1.644786 GAAAAGGCGTCCGTGGATGG 61.645 60.000 10.03 0.00 0.00 3.51
3555 4520 0.673644 AGAAAAGGCGTCCGTGGATG 60.674 55.000 3.65 3.65 0.00 3.51
3556 4521 0.391263 GAGAAAAGGCGTCCGTGGAT 60.391 55.000 0.00 0.00 0.00 3.41
3557 4522 1.005394 GAGAAAAGGCGTCCGTGGA 60.005 57.895 0.00 0.00 0.00 4.02
3558 4523 2.033194 GGAGAAAAGGCGTCCGTGG 61.033 63.158 0.00 0.00 0.00 4.94
3559 4524 0.602905 AAGGAGAAAAGGCGTCCGTG 60.603 55.000 0.00 0.00 35.33 4.94
3560 4525 0.108019 AAAGGAGAAAAGGCGTCCGT 59.892 50.000 0.00 0.00 35.33 4.69
3605 4570 2.132089 ATTTCCGGGACAAAGGGCGA 62.132 55.000 0.00 0.00 0.00 5.54
3607 4572 0.323451 AGATTTCCGGGACAAAGGGC 60.323 55.000 0.00 0.00 0.00 5.19
3608 4573 1.463674 CAGATTTCCGGGACAAAGGG 58.536 55.000 0.00 0.00 0.00 3.95
3609 4574 0.811281 GCAGATTTCCGGGACAAAGG 59.189 55.000 0.00 0.00 0.00 3.11
3610 4575 1.533625 TGCAGATTTCCGGGACAAAG 58.466 50.000 0.00 0.00 0.00 2.77
3611 4576 2.214376 ATGCAGATTTCCGGGACAAA 57.786 45.000 0.00 0.00 0.00 2.83
3612 4577 3.054728 TCTTATGCAGATTTCCGGGACAA 60.055 43.478 0.00 0.00 0.00 3.18
3613 4578 2.503765 TCTTATGCAGATTTCCGGGACA 59.496 45.455 0.00 0.00 0.00 4.02
3614 4579 3.194005 TCTTATGCAGATTTCCGGGAC 57.806 47.619 0.00 0.00 0.00 4.46
3615 4580 3.924114 TTCTTATGCAGATTTCCGGGA 57.076 42.857 0.00 0.00 0.00 5.14
3619 4584 5.578336 GCCTGTTTTTCTTATGCAGATTTCC 59.422 40.000 0.00 0.00 0.00 3.13
3705 4671 1.396301 CTTTCCATTCTCGAGTGCTGC 59.604 52.381 13.13 0.00 0.00 5.25
3766 4732 1.446966 GGTGTTCCTCTCGCTCAGC 60.447 63.158 0.00 0.00 0.00 4.26
3772 4738 1.784525 GTGTGAAGGTGTTCCTCTCG 58.215 55.000 0.00 0.00 44.35 4.04
3784 4753 2.562912 GGCATGTGGCGTGTGAAG 59.437 61.111 0.00 0.00 46.16 3.02
3785 4754 2.983030 GGGCATGTGGCGTGTGAA 60.983 61.111 0.00 0.00 46.16 3.18
3791 4760 2.514592 CTGTAGGGGCATGTGGCG 60.515 66.667 0.00 0.00 46.16 5.69
3800 4769 6.070194 TGGAGAAATAAAGAAGTCTGTAGGGG 60.070 42.308 0.00 0.00 0.00 4.79
3915 4899 2.094752 CCCTTTCGCAATTGATCGGTTT 60.095 45.455 10.34 0.00 0.00 3.27
3991 4975 5.092554 TGACGCTAGGGTCAATTGATTTA 57.907 39.130 33.21 12.37 43.55 1.40
4025 5009 4.285020 TGTGGATAGATTGCAGAGAGACT 58.715 43.478 0.00 0.00 0.00 3.24
4072 5056 3.487372 ACTTGTTAGCTCAAAAGTCCCC 58.513 45.455 0.00 0.00 0.00 4.81
4119 5106 4.274459 GTGCATGCCACCTCTTATTAGAAG 59.726 45.833 16.68 0.00 38.55 2.85
4157 5144 4.573607 GTCGATGGGGGTAAGTACAAATTC 59.426 45.833 0.00 0.00 0.00 2.17
4168 5155 2.754465 AGTTATGTGTCGATGGGGGTA 58.246 47.619 0.00 0.00 0.00 3.69
4195 5182 5.047519 TGACTAACTGGTTCTAGCACTAACC 60.048 44.000 4.48 4.48 44.51 2.85
4214 5202 4.039973 CCAACAACCCAACTCTAGTGACTA 59.960 45.833 0.00 0.00 0.00 2.59
4242 5230 3.656045 GGGTGTTGGCGTTGGTCG 61.656 66.667 0.00 0.00 43.12 4.79
4448 5450 5.957168 TGTCCAACATGTCATGGGAAATATT 59.043 36.000 17.08 0.00 37.31 1.28
4501 5514 7.227512 AGAGACAGGAAACACATTTGAGTAAAG 59.772 37.037 0.00 0.00 0.00 1.85
4567 5580 7.360113 TGCTCAAGTGTATATCATTACCTGA 57.640 36.000 0.00 0.00 38.53 3.86
4578 5595 7.864108 ATGTTTAGCAATGCTCAAGTGTATA 57.136 32.000 12.53 0.00 40.44 1.47
4599 5616 5.297776 CAGTTGTCTGAACAGAAAGGAATGT 59.702 40.000 6.08 0.00 43.76 2.71
4607 5624 7.284919 TCATACTACAGTTGTCTGAACAGAA 57.715 36.000 6.08 0.00 43.76 3.02
4889 6015 5.414454 AGTTTAGTTGCAACAGTGTGAGAAA 59.586 36.000 30.11 13.46 0.00 2.52
4902 8263 3.255642 GGCCAATGAAGAGTTTAGTTGCA 59.744 43.478 0.00 0.00 0.00 4.08
4947 8309 6.698008 TGAGTTTATGGCCAGTTTATCATG 57.302 37.500 13.05 0.00 0.00 3.07
4969 8331 6.086222 GCAATACATGGTCACAGTTACTTTG 58.914 40.000 0.00 0.00 0.00 2.77
4973 8335 4.094887 CCTGCAATACATGGTCACAGTTAC 59.905 45.833 0.00 0.00 0.00 2.50
4981 8343 2.710377 TGTGTCCTGCAATACATGGTC 58.290 47.619 4.27 0.00 0.00 4.02
5035 8402 2.145225 CACGTCTTGCTCTTCGTGG 58.855 57.895 13.81 1.21 46.12 4.94
5086 8483 4.876107 CACGAGCCATCAGGTAAGTAATTT 59.124 41.667 0.00 0.00 37.19 1.82
5112 8513 6.015434 AGGATTTATGGTGTCAGTTTTGGTTC 60.015 38.462 0.00 0.00 0.00 3.62
5147 8548 3.070302 GGAGACGAGAAGGCAGGAATTAT 59.930 47.826 0.00 0.00 0.00 1.28
5363 8771 6.438741 ACCATTCACAGAGTGAGAAGAAGATA 59.561 38.462 0.00 0.00 43.69 1.98
5454 8863 1.272212 CCCTAAACGGCAAAAGCACAT 59.728 47.619 0.00 0.00 0.00 3.21
5503 8912 0.478507 AGCTATTACCACCCATGCCC 59.521 55.000 0.00 0.00 0.00 5.36
5577 8986 6.430000 GCTACTTGACCAAAAATTCCTGAGTA 59.570 38.462 0.00 0.00 0.00 2.59
5585 8994 7.686434 TCCTAGTAGCTACTTGACCAAAAATT 58.314 34.615 30.40 5.25 37.73 1.82
5587 8996 6.675413 TCCTAGTAGCTACTTGACCAAAAA 57.325 37.500 30.40 9.19 37.73 1.94
5609 9022 7.093992 GGTAACTATGATCAGTCCTGCTAATC 58.906 42.308 0.09 0.00 0.00 1.75
5659 9074 1.296392 CCTGTCATTCTGGTCCGCA 59.704 57.895 0.00 0.00 0.00 5.69
5677 9092 4.162690 CCAGCGTAGGAGGCCCAC 62.163 72.222 0.00 0.00 33.88 4.61
5955 9439 1.202222 GGATTGCAGTGAGGAAATGCG 60.202 52.381 0.00 0.00 42.92 4.73
6142 9626 6.008331 AGACCAACTGTAGTATGAGTACACA 58.992 40.000 0.00 0.00 31.29 3.72
6162 9646 2.036604 GCCTAGGCTATCTGTTCAGACC 59.963 54.545 27.17 2.71 38.26 3.85
6232 9716 7.168469 GGAAGTCGCTACTAAGAGATTTGAATC 59.832 40.741 0.00 0.00 32.87 2.52
6285 9772 5.955355 CCCAAACCTACAAAAATATCTCCCA 59.045 40.000 0.00 0.00 0.00 4.37
6372 9859 3.434319 CCAGTGTGCGGTGATGGC 61.434 66.667 0.00 0.00 0.00 4.40
6492 9979 2.170166 TGATGAAACCCTGGAATGTGC 58.830 47.619 0.00 0.00 0.00 4.57
6522 10009 1.533756 GCTGCGCAAACAAGACAGAAA 60.534 47.619 13.05 0.00 0.00 2.52
6533 10020 3.701530 CGACGAGTGCTGCGCAAA 61.702 61.111 13.05 0.00 41.47 3.68
6768 10260 1.372872 GCCACATTTTCACGGCACC 60.373 57.895 0.00 0.00 44.25 5.01
6838 10332 0.098200 GGCGCTACGAAAACCCATTC 59.902 55.000 7.64 0.00 0.00 2.67
6950 10449 4.252971 TCTTCTTCCCAGTTCAGTTACG 57.747 45.455 0.00 0.00 0.00 3.18
6954 10453 5.574970 AGAAATCTTCTTCCCAGTTCAGT 57.425 39.130 0.00 0.00 36.36 3.41
7004 10503 8.349245 CGGCAATCTGTATTATGAATTTACCAA 58.651 33.333 0.00 0.00 0.00 3.67
7007 10506 6.519761 CGCGGCAATCTGTATTATGAATTTAC 59.480 38.462 0.00 0.00 0.00 2.01
7008 10507 6.203915 ACGCGGCAATCTGTATTATGAATTTA 59.796 34.615 12.47 0.00 0.00 1.40
7010 10509 4.515191 ACGCGGCAATCTGTATTATGAATT 59.485 37.500 12.47 0.00 0.00 2.17
7013 10512 3.106242 ACGCGGCAATCTGTATTATGA 57.894 42.857 12.47 0.00 0.00 2.15
7014 10513 4.234574 TCTACGCGGCAATCTGTATTATG 58.765 43.478 12.47 0.00 0.00 1.90
7037 11647 1.885887 TGCGCTCTGCCTGTTTTAATT 59.114 42.857 9.73 0.00 45.60 1.40
7041 11651 2.896801 CGTGCGCTCTGCCTGTTTT 61.897 57.895 9.73 0.00 45.60 2.43
7290 14377 1.142060 CTACGTGGGCCAATGGGATAA 59.858 52.381 8.40 0.00 35.59 1.75
7297 14384 0.916086 TGAATCCTACGTGGGCCAAT 59.084 50.000 14.07 1.32 36.20 3.16
7428 14579 3.291101 TTAGGGTCGTGCCTCGTGC 62.291 63.158 0.00 0.00 40.80 5.34
7429 14580 1.153823 CTTAGGGTCGTGCCTCGTG 60.154 63.158 0.00 0.00 40.80 4.35
7430 14581 0.896940 TTCTTAGGGTCGTGCCTCGT 60.897 55.000 0.00 0.00 40.80 4.18
7460 14611 0.680601 TACATACTCGGGCCGTGTCA 60.681 55.000 33.78 20.92 35.30 3.58
7462 14613 0.966875 TGTACATACTCGGGCCGTGT 60.967 55.000 32.60 32.60 37.37 4.49
7465 14616 0.944311 GCATGTACATACTCGGGCCG 60.944 60.000 22.51 22.51 0.00 6.13
7468 14619 0.671796 TCGGCATGTACATACTCGGG 59.328 55.000 8.32 0.00 0.00 5.14
7507 14658 1.942657 CGACCCAATAGCCAACATGAG 59.057 52.381 0.00 0.00 0.00 2.90
7513 14664 1.377987 GTGCCGACCCAATAGCCAA 60.378 57.895 0.00 0.00 0.00 4.52
7542 14693 0.399806 ACAAACCTGGCCAAATGGGT 60.400 50.000 7.01 7.92 39.65 4.51
7600 14751 3.319198 GGCCTTCGACCTGGGTCA 61.319 66.667 18.33 4.59 44.77 4.02
7606 14757 0.539051 CTCATCTTGGCCTTCGACCT 59.461 55.000 3.32 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.