Multiple sequence alignment - TraesCS1B01G180900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G180900 chr1B 100.000 7391 0 0 1 7391 327477319 327484709 0.000000e+00 13649.0
1 TraesCS1B01G180900 chr1B 97.500 80 2 0 3897 3976 327481294 327481215 3.600000e-28 137.0
2 TraesCS1B01G180900 chr1B 90.625 96 7 2 3895 3988 392878988 392878893 7.780000e-25 126.0
3 TraesCS1B01G180900 chr1B 95.161 62 2 1 7308 7368 592651182 592651121 6.100000e-16 97.1
4 TraesCS1B01G180900 chr1D 97.249 3090 68 10 816 3899 227859953 227863031 0.000000e+00 5219.0
5 TraesCS1B01G180900 chr1D 95.679 2615 83 12 3974 6565 227863030 227865637 0.000000e+00 4176.0
6 TraesCS1B01G180900 chr1D 95.469 2163 71 13 3974 6119 208278428 208276276 0.000000e+00 3426.0
7 TraesCS1B01G180900 chr1D 97.596 1830 36 3 2071 3899 208280249 208278427 0.000000e+00 3129.0
8 TraesCS1B01G180900 chr1D 96.468 1274 37 5 804 2073 208281545 208280276 0.000000e+00 2097.0
9 TraesCS1B01G180900 chr1D 94.658 468 16 3 6108 6568 208275910 208275445 0.000000e+00 717.0
10 TraesCS1B01G180900 chr1D 83.988 331 24 8 6937 7264 227865850 227866154 2.610000e-74 291.0
11 TraesCS1B01G180900 chr1D 88.542 192 14 1 6666 6857 227865669 227865852 7.460000e-55 226.0
12 TraesCS1B01G180900 chr1D 85.567 194 16 7 6666 6856 208275159 208274975 7.570000e-45 193.0
13 TraesCS1B01G180900 chr1A 95.861 2875 78 20 1045 3899 295458804 295461657 0.000000e+00 4612.0
14 TraesCS1B01G180900 chr1A 93.562 1895 71 17 4700 6565 295462709 295464581 0.000000e+00 2776.0
15 TraesCS1B01G180900 chr1A 95.730 726 30 1 3974 4698 295461656 295462381 0.000000e+00 1168.0
16 TraesCS1B01G180900 chr1A 90.050 804 69 8 4 802 187307453 187306656 0.000000e+00 1031.0
17 TraesCS1B01G180900 chr1A 96.154 390 7 1 801 1190 295457895 295458276 1.350000e-176 630.0
18 TraesCS1B01G180900 chr1A 86.294 591 66 6 1118 1705 311808690 311808112 4.870000e-176 628.0
19 TraesCS1B01G180900 chr1A 82.927 615 88 10 2083 2683 311807458 311806847 8.440000e-149 538.0
20 TraesCS1B01G180900 chr1A 99.476 191 1 0 1238 1428 295458267 295458457 1.530000e-91 348.0
21 TraesCS1B01G180900 chr1A 82.653 294 22 13 6976 7264 295464606 295464875 4.460000e-57 233.0
22 TraesCS1B01G180900 chr1A 96.721 61 2 0 7308 7368 541999789 541999729 1.310000e-17 102.0
23 TraesCS1B01G180900 chr1A 95.082 61 3 0 7308 7368 541999659 541999599 6.100000e-16 97.1
24 TraesCS1B01G180900 chr6B 93.481 813 38 9 1 799 35685402 35686213 0.000000e+00 1194.0
25 TraesCS1B01G180900 chr6B 95.082 122 6 0 7270 7391 487552694 487552573 7.570000e-45 193.0
26 TraesCS1B01G180900 chr6B 89.011 91 9 1 7298 7388 695006797 695006886 2.180000e-20 111.0
27 TraesCS1B01G180900 chr6B 81.731 104 15 4 1595 1696 474441548 474441447 4.750000e-12 84.2
28 TraesCS1B01G180900 chr5D 93.489 814 31 10 1 806 560063943 560064742 0.000000e+00 1190.0
29 TraesCS1B01G180900 chr5D 94.253 87 3 2 3897 3982 180255633 180255718 1.670000e-26 132.0
30 TraesCS1B01G180900 chr5D 89.524 105 9 2 6843 6946 540041345 540041448 1.670000e-26 132.0
31 TraesCS1B01G180900 chr7B 89.000 500 42 11 307 802 603317836 603318326 2.280000e-169 606.0
32 TraesCS1B01G180900 chr7B 88.259 247 24 2 67 309 603317461 603317706 2.610000e-74 291.0
33 TraesCS1B01G180900 chr7B 91.262 103 5 3 6839 6938 715360298 715360399 3.600000e-28 137.0
34 TraesCS1B01G180900 chr7B 87.129 101 10 3 7270 7368 630116213 630116114 2.180000e-20 111.0
35 TraesCS1B01G180900 chr7B 91.525 59 5 0 6612 6670 511299054 511299112 1.710000e-11 82.4
36 TraesCS1B01G180900 chr4B 90.787 445 39 2 1 443 114322666 114323110 1.780000e-165 593.0
37 TraesCS1B01G180900 chr4B 94.278 367 18 2 439 802 114387035 114387401 6.480000e-155 558.0
38 TraesCS1B01G180900 chr4B 93.277 119 8 0 7271 7389 427061666 427061548 7.620000e-40 176.0
39 TraesCS1B01G180900 chr7D 82.080 452 49 17 381 802 47398086 47397637 2.540000e-94 357.0
40 TraesCS1B01G180900 chr7D 92.857 126 8 1 7267 7391 147416110 147415985 1.640000e-41 182.0
41 TraesCS1B01G180900 chr7D 96.429 84 1 1 3896 3977 199127705 199127622 3.600000e-28 137.0
42 TraesCS1B01G180900 chr7D 95.294 85 2 1 3894 3976 199127620 199127704 4.650000e-27 134.0
43 TraesCS1B01G180900 chr7D 92.857 56 4 0 6612 6667 4181425 4181370 1.710000e-11 82.4
44 TraesCS1B01G180900 chr7D 87.143 70 7 2 6612 6681 528879248 528879315 2.210000e-10 78.7
45 TraesCS1B01G180900 chr7D 94.444 36 2 0 6583 6618 471049637 471049672 1.000000e-03 56.5
46 TraesCS1B01G180900 chr7A 95.833 96 2 2 6844 6938 98539536 98539630 3.570000e-33 154.0
47 TraesCS1B01G180900 chr7A 87.179 117 11 4 6741 6855 692612136 692612022 6.020000e-26 130.0
48 TraesCS1B01G180900 chr7A 92.857 56 4 0 6612 6667 624927688 624927743 1.710000e-11 82.4
49 TraesCS1B01G180900 chr7A 100.000 30 0 0 6589 6618 810673 810702 1.000000e-03 56.5
50 TraesCS1B01G180900 chr5B 95.556 90 3 1 6851 6939 263943335 263943246 7.730000e-30 143.0
51 TraesCS1B01G180900 chr5B 96.429 56 2 0 6612 6667 509185109 509185054 7.900000e-15 93.5
52 TraesCS1B01G180900 chr5B 92.857 56 4 0 6612 6667 488180165 488180220 1.710000e-11 82.4
53 TraesCS1B01G180900 chr5B 92.157 51 4 0 6568 6618 144586410 144586460 1.030000e-08 73.1
54 TraesCS1B01G180900 chr2D 93.684 95 5 1 6845 6938 178776445 178776539 2.780000e-29 141.0
55 TraesCS1B01G180900 chr2D 85.827 127 10 6 6734 6856 158246205 158246083 2.160000e-25 128.0
56 TraesCS1B01G180900 chr2A 93.617 94 6 0 6845 6938 746615317 746615224 2.780000e-29 141.0
57 TraesCS1B01G180900 chr2A 87.611 113 11 3 6743 6853 7721200 7721089 2.160000e-25 128.0
58 TraesCS1B01G180900 chr6D 94.505 91 4 1 6854 6943 149721664 149721754 1.000000e-28 139.0
59 TraesCS1B01G180900 chr6D 85.470 117 15 2 6742 6856 6756465 6756581 3.620000e-23 121.0
60 TraesCS1B01G180900 chr6D 84.252 127 13 6 6945 7069 129488745 129488624 4.690000e-22 117.0
61 TraesCS1B01G180900 chr6D 92.857 56 4 0 6612 6667 16509897 16509842 1.710000e-11 82.4
62 TraesCS1B01G180900 chr6D 80.180 111 18 4 1597 1705 307122128 307122020 6.150000e-11 80.5
63 TraesCS1B01G180900 chr3D 90.566 106 9 1 6835 6939 923130 923025 1.000000e-28 139.0
64 TraesCS1B01G180900 chr3D 84.348 115 17 1 6743 6856 404542870 404542984 2.180000e-20 111.0
65 TraesCS1B01G180900 chr3D 91.379 58 5 0 6612 6669 540564801 540564744 6.150000e-11 80.5
66 TraesCS1B01G180900 chr2B 95.402 87 2 1 3898 3982 675337233 675337147 3.600000e-28 137.0
67 TraesCS1B01G180900 chr2B 93.478 92 5 1 6848 6938 105991111 105991202 1.290000e-27 135.0
68 TraesCS1B01G180900 chr2B 95.402 87 1 2 3897 3980 675337153 675337239 1.290000e-27 135.0
69 TraesCS1B01G180900 chr2B 83.594 128 21 0 6938 7065 512341970 512342097 3.620000e-23 121.0
70 TraesCS1B01G180900 chr2B 82.645 121 14 3 6741 6855 759262591 759262472 4.720000e-17 100.0
71 TraesCS1B01G180900 chr3B 95.294 85 4 0 3898 3982 59326006 59325922 1.290000e-27 135.0
72 TraesCS1B01G180900 chr3B 87.611 113 12 2 6743 6854 457574237 457574126 6.020000e-26 130.0
73 TraesCS1B01G180900 chr3B 89.000 100 8 3 7271 7368 764855247 764855149 3.620000e-23 121.0
74 TraesCS1B01G180900 chr3B 100.000 28 0 0 6589 6616 22219542 22219515 1.300000e-02 52.8
75 TraesCS1B01G180900 chr6A 95.294 85 3 1 3898 3981 615393793 615393877 4.650000e-27 134.0
76 TraesCS1B01G180900 chr6A 79.464 112 21 2 1595 1705 443426646 443426536 2.210000e-10 78.7
77 TraesCS1B01G180900 chr6A 91.489 47 4 0 6570 6616 29796371 29796417 1.720000e-06 65.8
78 TraesCS1B01G180900 chr5A 91.379 58 5 0 6611 6668 426896797 426896740 6.150000e-11 80.5
79 TraesCS1B01G180900 chr5A 100.000 30 0 0 6589 6618 366651890 366651919 1.000000e-03 56.5
80 TraesCS1B01G180900 chr4A 84.127 63 7 1 7271 7333 692658199 692658140 2.880000e-04 58.4
81 TraesCS1B01G180900 chr3A 100.000 30 0 0 6589 6618 1773112 1773083 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G180900 chr1B 327477319 327484709 7390 False 13649.000000 13649 100.0000 1 7391 1 chr1B.!!$F1 7390
1 TraesCS1B01G180900 chr1D 227859953 227866154 6201 False 2478.000000 5219 91.3645 816 7264 4 chr1D.!!$F1 6448
2 TraesCS1B01G180900 chr1D 208274975 208281545 6570 True 1912.400000 3426 93.9516 804 6856 5 chr1D.!!$R1 6052
3 TraesCS1B01G180900 chr1A 295457895 295464875 6980 False 1627.833333 4612 93.9060 801 7264 6 chr1A.!!$F1 6463
4 TraesCS1B01G180900 chr1A 187306656 187307453 797 True 1031.000000 1031 90.0500 4 802 1 chr1A.!!$R1 798
5 TraesCS1B01G180900 chr1A 311806847 311808690 1843 True 583.000000 628 84.6105 1118 2683 2 chr1A.!!$R2 1565
6 TraesCS1B01G180900 chr6B 35685402 35686213 811 False 1194.000000 1194 93.4810 1 799 1 chr6B.!!$F1 798
7 TraesCS1B01G180900 chr5D 560063943 560064742 799 False 1190.000000 1190 93.4890 1 806 1 chr5D.!!$F3 805
8 TraesCS1B01G180900 chr7B 603317461 603318326 865 False 448.500000 606 88.6295 67 802 2 chr7B.!!$F3 735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
188 195 1.302511 GGCCGGAGAAGCACAAAGA 60.303 57.895 5.05 0.00 0.00 2.52 F
208 215 1.679305 GGCAGTCCTCGTCCTCTCA 60.679 63.158 0.00 0.00 0.00 3.27 F
1798 2507 0.671796 GGGTTGTTACCTTTGCGCTT 59.328 50.000 9.73 0.00 44.38 4.68 F
1978 3038 1.066143 ACCTGATAACTCTTGCCGTGG 60.066 52.381 0.00 0.00 0.00 4.94 F
3914 5015 0.481567 CCTACTCCCTCCGTCCCATA 59.518 60.000 0.00 0.00 0.00 2.74 F
4037 5138 0.034337 TCACTTGTTACTGCCCCGAC 59.966 55.000 0.00 0.00 0.00 4.79 F
4893 6322 1.411394 CACAGGAACAAAATGCGCAG 58.589 50.000 18.32 4.18 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 2486 0.179001 AGCGCAAAGGTAACAACCCT 60.179 50.000 11.47 0.00 41.41 4.34 R
2198 3295 2.222027 AGCACAACAAGTAAGGCAGAC 58.778 47.619 0.00 0.00 0.00 3.51 R
3640 4741 1.759445 GGTGGCATTCTAGAGCTCAGA 59.241 52.381 17.77 13.54 0.00 3.27 R
3957 5058 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74 R
5304 6735 3.485394 TGCATAGAAGTGCCAACAAAGA 58.515 40.909 0.00 0.00 44.43 2.52 R
5963 7435 1.526917 ATATGGAGGTTGCTGCGGC 60.527 57.895 11.65 11.65 39.26 6.53 R
6568 8427 1.607148 TGCGGACTAGATACGGATGTG 59.393 52.381 0.00 0.00 0.00 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
99 103 5.545063 AACATTTTTCTCCCCAACGAAAT 57.455 34.783 0.00 0.00 0.00 2.17
101 105 4.832823 ACATTTTTCTCCCCAACGAAATCT 59.167 37.500 0.00 0.00 0.00 2.40
102 106 5.048013 ACATTTTTCTCCCCAACGAAATCTC 60.048 40.000 0.00 0.00 0.00 2.75
104 108 4.367039 TTTCTCCCCAACGAAATCTCTT 57.633 40.909 0.00 0.00 0.00 2.85
106 110 3.674997 TCTCCCCAACGAAATCTCTTTG 58.325 45.455 0.00 0.00 32.07 2.77
111 118 1.885887 CAACGAAATCTCTTTGCCCCA 59.114 47.619 0.00 0.00 0.00 4.96
188 195 1.302511 GGCCGGAGAAGCACAAAGA 60.303 57.895 5.05 0.00 0.00 2.52
208 215 1.679305 GGCAGTCCTCGTCCTCTCA 60.679 63.158 0.00 0.00 0.00 3.27
224 231 3.055747 CCTCTCACCTTTTCCCTGTCTAC 60.056 52.174 0.00 0.00 0.00 2.59
318 325 4.796495 GGGCGCATCCTCCGGTTT 62.796 66.667 10.83 0.00 34.39 3.27
330 337 1.834263 CTCCGGTTTCCCTCTCTGAAT 59.166 52.381 0.00 0.00 0.00 2.57
371 384 6.153000 TGTTCCACTTGTTCCTCTACTCTATC 59.847 42.308 0.00 0.00 0.00 2.08
385 398 7.392113 CCTCTACTCTATCAACTACGGATGAAT 59.608 40.741 0.00 0.00 0.00 2.57
493 506 6.059787 AGGAGAGATAGTTCAGCATGTTTT 57.940 37.500 0.00 0.00 37.40 2.43
536 550 4.710865 TGATTATGTTGAACCATGCCATGT 59.289 37.500 3.63 0.00 0.00 3.21
603 617 1.743394 GCCATGTAAGTAGTTGCCACC 59.257 52.381 0.00 0.00 0.00 4.61
736 752 7.044798 CCCTCTCAACCAAACAACAAAAATTA 58.955 34.615 0.00 0.00 0.00 1.40
739 755 7.327214 TCTCAACCAAACAACAAAAATTAGCT 58.673 30.769 0.00 0.00 0.00 3.32
1000 1019 2.524640 GACCCCGATCCCCTCCTC 60.525 72.222 0.00 0.00 0.00 3.71
1001 1020 4.173701 ACCCCGATCCCCTCCTCC 62.174 72.222 0.00 0.00 0.00 4.30
1002 1021 4.964241 CCCCGATCCCCTCCTCCC 62.964 77.778 0.00 0.00 0.00 4.30
1003 1022 3.851184 CCCGATCCCCTCCTCCCT 61.851 72.222 0.00 0.00 0.00 4.20
1004 1023 2.203714 CCGATCCCCTCCTCCCTC 60.204 72.222 0.00 0.00 0.00 4.30
1005 1024 2.203714 CGATCCCCTCCTCCCTCC 60.204 72.222 0.00 0.00 0.00 4.30
1006 1025 2.205749 GATCCCCTCCTCCCTCCC 59.794 72.222 0.00 0.00 0.00 4.30
1007 1026 2.289979 ATCCCCTCCTCCCTCCCT 60.290 66.667 0.00 0.00 0.00 4.20
1798 2507 0.671796 GGGTTGTTACCTTTGCGCTT 59.328 50.000 9.73 0.00 44.38 4.68
1952 2999 9.712305 AGTGCAGTATGTTTATCCTGATATTAC 57.288 33.333 0.00 0.00 39.31 1.89
1970 3017 5.831702 ATTACGACGAACCTGATAACTCT 57.168 39.130 0.00 0.00 0.00 3.24
1978 3038 1.066143 ACCTGATAACTCTTGCCGTGG 60.066 52.381 0.00 0.00 0.00 4.94
2038 3098 6.537355 ACAATCATGTATGATCGATTTCCCT 58.463 36.000 7.74 0.00 46.22 4.20
2153 3244 7.421530 TTTACAGTTAGCTCAACTTCATGAC 57.578 36.000 0.00 0.00 45.54 3.06
2198 3295 5.689514 TGTAACTTTGATTTCAAATGTGCCG 59.310 36.000 6.21 0.00 43.92 5.69
2286 3387 2.829120 ACCTCCTCTTAGTCAGCACTTC 59.171 50.000 0.00 0.00 33.62 3.01
2364 3465 5.125417 TGCTTGCTATAGGTTTTCATTGGAC 59.875 40.000 1.04 0.00 0.00 4.02
2403 3504 1.514678 TTGCTCAGGAAATTGCGCGT 61.515 50.000 8.43 0.00 31.63 6.01
2408 3509 1.999735 TCAGGAAATTGCGCGTCTAAG 59.000 47.619 8.43 0.00 0.00 2.18
2646 3747 6.643388 TGAAGTTCTAGATGCTAGCAATGAA 58.357 36.000 23.54 18.67 0.00 2.57
2979 4080 1.823041 GATGCTGCAGAAGGAGGCC 60.823 63.158 20.43 0.00 33.18 5.19
3165 4266 5.983333 ACCCCTTGATGTCTATTCTTGAT 57.017 39.130 0.00 0.00 0.00 2.57
3273 4374 4.940463 TGCACCCTATTATTCGTCACTAC 58.060 43.478 0.00 0.00 0.00 2.73
3592 4693 5.825593 AATGAAGAGAAAGGTACAGTCCA 57.174 39.130 0.00 0.00 0.00 4.02
3615 4716 6.458210 CATTCCTGTTGTGAGGCTTATTTTT 58.542 36.000 0.00 0.00 32.51 1.94
3640 4741 6.065976 TCTCCACATTCATAACCATCAAGT 57.934 37.500 0.00 0.00 0.00 3.16
3748 4849 1.386533 GTGCCTGATCTTGGTGATGG 58.613 55.000 0.00 0.00 35.14 3.51
3791 4892 8.791327 TTTCATGTGAATATTCTAGCTGTCAA 57.209 30.769 16.24 4.86 33.54 3.18
3839 4940 6.017400 TGCAATCCTTCTTCAAGTTGAATC 57.983 37.500 18.35 1.76 35.59 2.52
3899 5000 7.598493 ACATTCATGTTTTACATTTGCACCTAC 59.402 33.333 0.00 0.00 36.53 3.18
3900 5001 6.892658 TCATGTTTTACATTTGCACCTACT 57.107 33.333 0.00 0.00 36.53 2.57
3901 5002 6.908825 TCATGTTTTACATTTGCACCTACTC 58.091 36.000 0.00 0.00 36.53 2.59
3902 5003 5.699097 TGTTTTACATTTGCACCTACTCC 57.301 39.130 0.00 0.00 0.00 3.85
3903 5004 4.521256 TGTTTTACATTTGCACCTACTCCC 59.479 41.667 0.00 0.00 0.00 4.30
3904 5005 4.650972 TTTACATTTGCACCTACTCCCT 57.349 40.909 0.00 0.00 0.00 4.20
3905 5006 2.789409 ACATTTGCACCTACTCCCTC 57.211 50.000 0.00 0.00 0.00 4.30
3906 5007 1.282157 ACATTTGCACCTACTCCCTCC 59.718 52.381 0.00 0.00 0.00 4.30
3907 5008 0.541863 ATTTGCACCTACTCCCTCCG 59.458 55.000 0.00 0.00 0.00 4.63
3908 5009 0.834687 TTTGCACCTACTCCCTCCGT 60.835 55.000 0.00 0.00 0.00 4.69
3909 5010 1.255667 TTGCACCTACTCCCTCCGTC 61.256 60.000 0.00 0.00 0.00 4.79
3910 5011 2.424733 GCACCTACTCCCTCCGTCC 61.425 68.421 0.00 0.00 0.00 4.79
3911 5012 1.757340 CACCTACTCCCTCCGTCCC 60.757 68.421 0.00 0.00 0.00 4.46
3912 5013 2.243888 ACCTACTCCCTCCGTCCCA 61.244 63.158 0.00 0.00 0.00 4.37
3913 5014 1.233369 CCTACTCCCTCCGTCCCAT 59.767 63.158 0.00 0.00 0.00 4.00
3914 5015 0.481567 CCTACTCCCTCCGTCCCATA 59.518 60.000 0.00 0.00 0.00 2.74
3915 5016 1.133262 CCTACTCCCTCCGTCCCATAA 60.133 57.143 0.00 0.00 0.00 1.90
3916 5017 2.492940 CCTACTCCCTCCGTCCCATAAT 60.493 54.545 0.00 0.00 0.00 1.28
3917 5018 3.245514 CCTACTCCCTCCGTCCCATAATA 60.246 52.174 0.00 0.00 0.00 0.98
3918 5019 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3919 5020 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3920 5021 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3921 5022 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3922 5023 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3923 5024 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3924 5025 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3925 5026 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3926 5027 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3927 5028 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3928 5029 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3929 5030 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3930 5031 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3931 5032 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
3932 5033 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
3933 5034 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
3934 5035 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3935 5036 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
3936 5037 9.205916 CCATAATATAAGAACGTTTTTGACACG 57.794 33.333 13.87 0.00 43.52 4.49
3961 5062 8.266682 CGTGTCAAAGACGTTCTTATATTATGG 58.733 37.037 0.00 0.00 35.27 2.74
3962 5063 8.548721 GTGTCAAAGACGTTCTTATATTATGGG 58.451 37.037 0.00 0.00 35.27 4.00
3963 5064 8.479689 TGTCAAAGACGTTCTTATATTATGGGA 58.520 33.333 0.00 0.00 35.27 4.37
3964 5065 8.762426 GTCAAAGACGTTCTTATATTATGGGAC 58.238 37.037 0.00 0.00 35.27 4.46
3965 5066 7.650504 TCAAAGACGTTCTTATATTATGGGACG 59.349 37.037 0.00 9.33 35.27 4.79
3966 5067 6.022163 AGACGTTCTTATATTATGGGACGG 57.978 41.667 13.18 1.76 0.00 4.79
3967 5068 5.771666 AGACGTTCTTATATTATGGGACGGA 59.228 40.000 13.18 0.00 0.00 4.69
3968 5069 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3969 5070 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3970 5071 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3971 5072 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3972 5073 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
4003 5104 3.610911 AGGCAATTTAAGAAGCTAGCGT 58.389 40.909 9.55 5.81 0.00 5.07
4037 5138 0.034337 TCACTTGTTACTGCCCCGAC 59.966 55.000 0.00 0.00 0.00 4.79
4116 5217 5.617087 GCGAGTCGTGCTTATGTATGAGATA 60.617 44.000 15.08 0.00 0.00 1.98
4136 5237 6.236409 AGATATTATGTTCATGGGAGTGCTG 58.764 40.000 0.00 0.00 0.00 4.41
4274 5375 1.541588 GATTTCAGGGAGGTGTTGTGC 59.458 52.381 0.00 0.00 0.00 4.57
4318 5420 6.889177 TGGTCCTTGCATAACTGAATTTGATA 59.111 34.615 0.00 0.00 0.00 2.15
4322 5424 9.187996 TCCTTGCATAACTGAATTTGATATTGA 57.812 29.630 0.00 0.00 0.00 2.57
4439 5541 6.961360 TTATGCTAGGATGATATACTCCCG 57.039 41.667 7.05 0.00 31.49 5.14
4553 5655 8.574251 ACATTGTAGCACAGGAACAATTATTA 57.426 30.769 0.00 0.00 40.83 0.98
4594 5696 4.711846 GCCCCAATTCCTGATAAAGACTTT 59.288 41.667 5.62 5.62 0.00 2.66
4798 6227 6.146184 GCAAAGAAAGCAAGACCCTAAAAATC 59.854 38.462 0.00 0.00 0.00 2.17
4828 6257 6.470557 AACAATTGACAATGCTACATTTGC 57.529 33.333 13.59 0.00 32.08 3.68
4830 6259 5.172934 CAATTGACAATGCTACATTTGCCT 58.827 37.500 0.00 0.00 0.00 4.75
4893 6322 1.411394 CACAGGAACAAAATGCGCAG 58.589 50.000 18.32 4.18 0.00 5.18
4983 6412 5.939764 AGATATCCAGCACTTGTGACTTA 57.060 39.130 4.79 0.00 0.00 2.24
4987 6416 3.728845 TCCAGCACTTGTGACTTAAGAC 58.271 45.455 10.09 3.35 0.00 3.01
5017 6446 9.922305 GCTTGATACAATCTTGAATGTACTTAC 57.078 33.333 1.21 0.00 35.05 2.34
5143 6572 9.196552 ACAGTTTCAGCAATTTTTAATCTTAGC 57.803 29.630 0.00 0.00 0.00 3.09
5304 6735 8.522542 ACTCCTATCTTAAGTTCAAGTACGAT 57.477 34.615 1.63 0.00 0.00 3.73
5313 6744 5.924475 AGTTCAAGTACGATCTTTGTTGG 57.076 39.130 0.00 0.00 0.00 3.77
5768 7240 3.560068 AGTTAGCAGGTTTCAACTTGTCG 59.440 43.478 3.98 0.00 38.18 4.35
6250 8099 7.007456 CGATTTGTTCTCTTAATTTTTCTCGCC 59.993 37.037 0.00 0.00 0.00 5.54
6271 8120 4.199310 CCGATATGTGTCCTTGTGGATTT 58.801 43.478 0.00 0.00 45.29 2.17
6435 8285 7.444183 TGGATTATGGAAATGAGGAACGATTAC 59.556 37.037 0.00 0.00 0.00 1.89
6530 8389 5.184479 ACTGCGTATCTAAAGTGAGTAACCA 59.816 40.000 0.00 0.00 0.00 3.67
6543 8402 3.274288 GAGTAACCATCCAGCCTTTCTG 58.726 50.000 0.00 0.00 42.49 3.02
6546 8405 2.206576 ACCATCCAGCCTTTCTGTTC 57.793 50.000 0.00 0.00 41.25 3.18
6552 8411 2.951642 TCCAGCCTTTCTGTTCTGTTTG 59.048 45.455 0.00 0.00 41.25 2.93
6565 8424 5.774498 GTTCTGTTTGGAGAGAACCAATT 57.226 39.130 0.00 0.00 45.55 2.32
6568 8427 6.733233 GTTCTGTTTGGAGAGAACCAATTCAC 60.733 42.308 0.00 0.00 45.55 3.18
6571 8430 3.855255 TGGAGAGAACCAATTCACACA 57.145 42.857 0.00 0.00 37.29 3.72
6574 8433 3.691609 GGAGAGAACCAATTCACACATCC 59.308 47.826 0.00 0.00 37.29 3.51
6575 8434 3.338249 AGAGAACCAATTCACACATCCG 58.662 45.455 0.00 0.00 37.29 4.18
6576 8435 3.074412 GAGAACCAATTCACACATCCGT 58.926 45.455 0.00 0.00 37.29 4.69
6577 8436 4.020573 AGAGAACCAATTCACACATCCGTA 60.021 41.667 0.00 0.00 37.29 4.02
6581 8440 5.607939 ACCAATTCACACATCCGTATCTA 57.392 39.130 0.00 0.00 0.00 1.98
6584 8443 5.692204 CCAATTCACACATCCGTATCTAGTC 59.308 44.000 0.00 0.00 0.00 2.59
6585 8444 4.913335 TTCACACATCCGTATCTAGTCC 57.087 45.455 0.00 0.00 0.00 3.85
6587 8446 1.607628 ACACATCCGTATCTAGTCCGC 59.392 52.381 0.00 0.00 0.00 5.54
6588 8447 1.607148 CACATCCGTATCTAGTCCGCA 59.393 52.381 0.00 0.00 0.00 5.69
6589 8448 2.229062 CACATCCGTATCTAGTCCGCAT 59.771 50.000 0.00 0.00 0.00 4.73
6590 8449 2.891580 ACATCCGTATCTAGTCCGCATT 59.108 45.455 0.00 0.00 0.00 3.56
6591 8450 3.245797 CATCCGTATCTAGTCCGCATTG 58.754 50.000 0.00 0.00 0.00 2.82
6593 8452 2.953648 TCCGTATCTAGTCCGCATTGAA 59.046 45.455 0.00 0.00 0.00 2.69
6594 8453 3.382227 TCCGTATCTAGTCCGCATTGAAA 59.618 43.478 0.00 0.00 0.00 2.69
6595 8454 4.038763 TCCGTATCTAGTCCGCATTGAAAT 59.961 41.667 0.00 0.00 0.00 2.17
6596 8455 4.750098 CCGTATCTAGTCCGCATTGAAATT 59.250 41.667 0.00 0.00 0.00 1.82
6599 8458 6.201044 CGTATCTAGTCCGCATTGAAATTTCT 59.799 38.462 18.64 0.00 0.00 2.52
6600 8459 7.381408 CGTATCTAGTCCGCATTGAAATTTCTA 59.619 37.037 18.64 12.00 0.00 2.10
6602 8461 7.915293 TCTAGTCCGCATTGAAATTTCTAAA 57.085 32.000 18.64 6.58 0.00 1.85
6603 8462 8.330466 TCTAGTCCGCATTGAAATTTCTAAAA 57.670 30.769 18.64 5.88 0.00 1.52
6604 8463 8.450964 TCTAGTCCGCATTGAAATTTCTAAAAG 58.549 33.333 18.64 4.72 0.00 2.27
6605 8464 6.389906 AGTCCGCATTGAAATTTCTAAAAGG 58.610 36.000 18.64 15.30 0.00 3.11
6606 8465 6.208599 AGTCCGCATTGAAATTTCTAAAAGGA 59.791 34.615 18.64 17.01 0.00 3.36
6607 8466 6.308041 GTCCGCATTGAAATTTCTAAAAGGAC 59.692 38.462 24.88 24.88 35.75 3.85
6608 8467 6.208599 TCCGCATTGAAATTTCTAAAAGGACT 59.791 34.615 18.64 0.00 0.00 3.85
6610 8469 8.026607 CCGCATTGAAATTTCTAAAAGGACTTA 58.973 33.333 18.64 0.00 0.00 2.24
6644 8503 9.974980 TCCGCATTAAAATTTCTAAAAAGACTT 57.025 25.926 0.00 0.00 0.00 3.01
6716 8763 7.707774 TCGACGAATATTATTCTGCATGAAA 57.292 32.000 13.19 0.00 38.29 2.69
6722 8769 9.979270 CGAATATTATTCTGCATGAAAGGATAC 57.021 33.333 13.19 0.00 38.29 2.24
6741 8788 9.574516 AAGGATACAAAGTTTTGATGTACTTCT 57.425 29.630 11.29 0.00 40.55 2.85
6759 8806 4.966805 ACTTCTTCCCTCCGTTCCATAATA 59.033 41.667 0.00 0.00 0.00 0.98
6864 8914 8.459911 ACCAAAAATATAAAATACTCCCTCCG 57.540 34.615 0.00 0.00 0.00 4.63
6865 8915 8.057011 ACCAAAAATATAAAATACTCCCTCCGT 58.943 33.333 0.00 0.00 0.00 4.69
6866 8916 8.565416 CCAAAAATATAAAATACTCCCTCCGTC 58.435 37.037 0.00 0.00 0.00 4.79
6867 8917 8.565416 CAAAAATATAAAATACTCCCTCCGTCC 58.435 37.037 0.00 0.00 0.00 4.79
6868 8918 6.370186 AATATAAAATACTCCCTCCGTCCC 57.630 41.667 0.00 0.00 0.00 4.46
6869 8919 1.961133 AAAATACTCCCTCCGTCCCA 58.039 50.000 0.00 0.00 0.00 4.37
6870 8920 2.191981 AAATACTCCCTCCGTCCCAT 57.808 50.000 0.00 0.00 0.00 4.00
6871 8921 3.339713 AAATACTCCCTCCGTCCCATA 57.660 47.619 0.00 0.00 0.00 2.74
6872 8922 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
6873 8923 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
6874 8924 4.687262 ATACTCCCTCCGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
6875 8925 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
6876 8926 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
6877 8927 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
6878 8928 5.408824 ACTCCCTCCGTCCCATAATATAAA 58.591 41.667 0.00 0.00 0.00 1.40
6879 8929 5.847817 ACTCCCTCCGTCCCATAATATAAAA 59.152 40.000 0.00 0.00 0.00 1.52
6880 8930 6.330778 ACTCCCTCCGTCCCATAATATAAAAA 59.669 38.462 0.00 0.00 0.00 1.94
6881 8931 6.536447 TCCCTCCGTCCCATAATATAAAAAC 58.464 40.000 0.00 0.00 0.00 2.43
6882 8932 5.410439 CCCTCCGTCCCATAATATAAAAACG 59.590 44.000 0.00 0.00 0.00 3.60
6883 8933 5.993441 CCTCCGTCCCATAATATAAAAACGT 59.007 40.000 0.00 0.00 0.00 3.99
6884 8934 6.484308 CCTCCGTCCCATAATATAAAAACGTT 59.516 38.462 0.00 0.00 0.00 3.99
6885 8935 7.012610 CCTCCGTCCCATAATATAAAAACGTTT 59.987 37.037 7.96 7.96 0.00 3.60
6886 8936 8.278729 TCCGTCCCATAATATAAAAACGTTTT 57.721 30.769 20.26 20.26 0.00 2.43
6887 8937 8.182881 TCCGTCCCATAATATAAAAACGTTTTG 58.817 33.333 25.83 11.93 0.00 2.44
6888 8938 8.182881 CCGTCCCATAATATAAAAACGTTTTGA 58.817 33.333 25.83 19.65 0.00 2.69
6889 8939 9.002080 CGTCCCATAATATAAAAACGTTTTGAC 57.998 33.333 25.83 20.48 0.00 3.18
6890 8940 9.843334 GTCCCATAATATAAAAACGTTTTGACA 57.157 29.630 25.83 9.45 0.00 3.58
6891 8941 9.843334 TCCCATAATATAAAAACGTTTTGACAC 57.157 29.630 25.83 0.00 0.00 3.67
6892 8942 9.849166 CCCATAATATAAAAACGTTTTGACACT 57.151 29.630 25.83 12.88 0.00 3.55
6930 8980 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
6931 8981 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
6932 8982 6.942976 ACGTTCTTATATTTTGGGACAGAGA 58.057 36.000 0.00 0.00 42.39 3.10
6933 8983 7.042335 ACGTTCTTATATTTTGGGACAGAGAG 58.958 38.462 0.00 0.00 42.39 3.20
6934 8984 7.093465 ACGTTCTTATATTTTGGGACAGAGAGA 60.093 37.037 0.00 0.00 42.39 3.10
6935 8985 7.436673 CGTTCTTATATTTTGGGACAGAGAGAG 59.563 40.741 0.00 0.00 42.39 3.20
6936 8986 7.979786 TCTTATATTTTGGGACAGAGAGAGT 57.020 36.000 0.00 0.00 42.39 3.24
6937 8987 9.488762 TTCTTATATTTTGGGACAGAGAGAGTA 57.511 33.333 0.00 0.00 42.39 2.59
6938 8988 9.661954 TCTTATATTTTGGGACAGAGAGAGTAT 57.338 33.333 0.00 0.00 42.39 2.12
6939 8989 9.703892 CTTATATTTTGGGACAGAGAGAGTATG 57.296 37.037 0.00 0.00 42.39 2.39
6940 8990 7.921041 ATATTTTGGGACAGAGAGAGTATGA 57.079 36.000 0.00 0.00 42.39 2.15
6941 8991 6.627087 ATTTTGGGACAGAGAGAGTATGAA 57.373 37.500 0.00 0.00 42.39 2.57
6942 8992 6.433847 TTTTGGGACAGAGAGAGTATGAAA 57.566 37.500 0.00 0.00 42.39 2.69
6943 8993 5.407407 TTGGGACAGAGAGAGTATGAAAC 57.593 43.478 0.00 0.00 42.39 2.78
6944 8994 4.678256 TGGGACAGAGAGAGTATGAAACT 58.322 43.478 0.00 0.00 42.80 2.66
6945 8995 5.827756 TGGGACAGAGAGAGTATGAAACTA 58.172 41.667 0.00 0.00 39.07 2.24
6946 8996 5.652891 TGGGACAGAGAGAGTATGAAACTAC 59.347 44.000 0.00 0.00 39.07 2.73
6947 8997 5.652891 GGGACAGAGAGAGTATGAAACTACA 59.347 44.000 0.00 0.00 39.07 2.74
6948 8998 6.322712 GGGACAGAGAGAGTATGAAACTACAT 59.677 42.308 0.00 0.00 39.07 2.29
6949 8999 7.422399 GGACAGAGAGAGTATGAAACTACATC 58.578 42.308 0.00 0.00 39.07 3.06
7029 9079 8.437742 CCATAAACTTGATCAAAATTTGTGAGC 58.562 33.333 26.53 0.00 32.00 4.26
7034 9084 7.267128 ACTTGATCAAAATTTGTGAGCTTTGA 58.733 30.769 9.88 0.00 40.85 2.69
7038 9090 9.932207 TGATCAAAATTTGTGAGCTTTGATTAT 57.068 25.926 5.56 0.00 44.49 1.28
7089 9142 7.229581 AGAACGGAGGGAATATATGAACTAC 57.770 40.000 0.00 0.00 0.00 2.73
7090 9143 6.781014 AGAACGGAGGGAATATATGAACTACA 59.219 38.462 0.00 0.00 0.00 2.74
7114 9167 4.444720 GTGTAGTCTGCAGTGTTCAAGTAC 59.555 45.833 14.67 10.75 0.00 2.73
7116 9169 2.361119 AGTCTGCAGTGTTCAAGTACGA 59.639 45.455 14.67 0.00 0.00 3.43
7120 9173 0.429736 CAGTGTTCAAGTACGACGCG 59.570 55.000 3.53 3.53 0.00 6.01
7134 9187 1.930816 GACGCGACGACACATGACAC 61.931 60.000 15.93 0.00 0.00 3.67
7156 9209 4.947147 GTGGTGGGCGCAGTGGAA 62.947 66.667 10.83 0.00 0.00 3.53
7157 9210 3.965258 TGGTGGGCGCAGTGGAAT 61.965 61.111 10.83 0.00 0.00 3.01
7158 9211 3.134127 GGTGGGCGCAGTGGAATC 61.134 66.667 10.83 0.00 0.00 2.52
7159 9212 3.134127 GTGGGCGCAGTGGAATCC 61.134 66.667 10.83 0.00 0.00 3.01
7160 9213 4.424711 TGGGCGCAGTGGAATCCC 62.425 66.667 10.83 0.00 37.49 3.85
7185 9238 1.185315 CAGTGGGGTAAAAGGCATGG 58.815 55.000 0.00 0.00 0.00 3.66
7230 9283 0.888619 CTACAAGTCTGGCTCCGACA 59.111 55.000 11.39 0.00 33.89 4.35
7264 9317 0.941542 TGCGGCACAAACTACTTCAC 59.058 50.000 0.00 0.00 0.00 3.18
7265 9318 0.237498 GCGGCACAAACTACTTCACC 59.763 55.000 0.00 0.00 0.00 4.02
7266 9319 1.878953 CGGCACAAACTACTTCACCT 58.121 50.000 0.00 0.00 0.00 4.00
7267 9320 2.868839 GCGGCACAAACTACTTCACCTA 60.869 50.000 0.00 0.00 0.00 3.08
7268 9321 2.735134 CGGCACAAACTACTTCACCTAC 59.265 50.000 0.00 0.00 0.00 3.18
7269 9322 3.735591 GGCACAAACTACTTCACCTACA 58.264 45.455 0.00 0.00 0.00 2.74
7270 9323 4.131596 GGCACAAACTACTTCACCTACAA 58.868 43.478 0.00 0.00 0.00 2.41
7271 9324 4.213482 GGCACAAACTACTTCACCTACAAG 59.787 45.833 0.00 0.00 0.00 3.16
7280 9333 0.690762 TCACCTACAAGGCCAACTCC 59.309 55.000 5.01 0.00 39.63 3.85
7284 9337 0.673644 CTACAAGGCCAACTCCACCG 60.674 60.000 5.01 0.00 0.00 4.94
7285 9338 2.741486 TACAAGGCCAACTCCACCGC 62.741 60.000 5.01 0.00 0.00 5.68
7286 9339 3.884774 AAGGCCAACTCCACCGCA 61.885 61.111 5.01 0.00 0.00 5.69
7287 9340 3.210012 AAGGCCAACTCCACCGCAT 62.210 57.895 5.01 0.00 0.00 4.73
7288 9341 3.443045 GGCCAACTCCACCGCATG 61.443 66.667 0.00 0.00 0.00 4.06
7289 9342 2.359850 GCCAACTCCACCGCATGA 60.360 61.111 0.00 0.00 0.00 3.07
7290 9343 2.690778 GCCAACTCCACCGCATGAC 61.691 63.158 0.00 0.00 0.00 3.06
7292 9345 2.040544 CAACTCCACCGCATGACCC 61.041 63.158 0.00 0.00 0.00 4.46
7294 9347 1.852157 AACTCCACCGCATGACCCAT 61.852 55.000 0.00 0.00 0.00 4.00
7295 9348 1.077501 CTCCACCGCATGACCCATT 60.078 57.895 0.00 0.00 0.00 3.16
7296 9349 0.680921 CTCCACCGCATGACCCATTT 60.681 55.000 0.00 0.00 0.00 2.32
7297 9350 0.679640 TCCACCGCATGACCCATTTC 60.680 55.000 0.00 0.00 0.00 2.17
7298 9351 1.429021 CACCGCATGACCCATTTCG 59.571 57.895 0.00 0.00 0.00 3.46
7299 9352 1.024046 CACCGCATGACCCATTTCGA 61.024 55.000 0.00 0.00 0.00 3.71
7300 9353 1.024579 ACCGCATGACCCATTTCGAC 61.025 55.000 0.00 0.00 0.00 4.20
7302 9355 0.744414 CGCATGACCCATTTCGACCT 60.744 55.000 0.00 0.00 0.00 3.85
7303 9356 1.017387 GCATGACCCATTTCGACCTC 58.983 55.000 0.00 0.00 0.00 3.85
7304 9357 1.678728 GCATGACCCATTTCGACCTCA 60.679 52.381 0.00 0.00 0.00 3.86
7305 9358 2.710377 CATGACCCATTTCGACCTCAA 58.290 47.619 0.00 0.00 0.00 3.02
7306 9359 2.940994 TGACCCATTTCGACCTCAAA 57.059 45.000 0.00 0.00 0.00 2.69
7307 9360 2.500229 TGACCCATTTCGACCTCAAAC 58.500 47.619 0.00 0.00 0.00 2.93
7308 9361 1.463444 GACCCATTTCGACCTCAAACG 59.537 52.381 0.00 0.00 0.00 3.60
7309 9362 0.802494 CCCATTTCGACCTCAAACGG 59.198 55.000 0.00 0.00 0.00 4.44
7310 9363 1.609580 CCCATTTCGACCTCAAACGGA 60.610 52.381 0.00 0.00 0.00 4.69
7311 9364 1.463444 CCATTTCGACCTCAAACGGAC 59.537 52.381 0.00 0.00 0.00 4.79
7312 9365 1.126113 CATTTCGACCTCAAACGGACG 59.874 52.381 0.00 0.00 42.21 4.79
7313 9366 0.102844 TTTCGACCTCAAACGGACGT 59.897 50.000 0.00 0.00 41.70 4.34
7314 9367 0.318107 TTCGACCTCAAACGGACGTC 60.318 55.000 7.13 7.13 41.70 4.34
7315 9368 1.731969 CGACCTCAAACGGACGTCC 60.732 63.158 25.28 25.28 37.43 4.79
7325 9378 2.126031 GGACGTCCGCTTCTGTCC 60.126 66.667 20.85 0.00 43.60 4.02
7326 9379 2.504244 GACGTCCGCTTCTGTCCG 60.504 66.667 3.51 0.00 0.00 4.79
7327 9380 3.264866 GACGTCCGCTTCTGTCCGT 62.265 63.158 3.51 0.00 0.00 4.69
7328 9381 2.049433 CGTCCGCTTCTGTCCGTT 60.049 61.111 0.00 0.00 0.00 4.44
7329 9382 1.663702 CGTCCGCTTCTGTCCGTTT 60.664 57.895 0.00 0.00 0.00 3.60
7330 9383 1.860078 GTCCGCTTCTGTCCGTTTG 59.140 57.895 0.00 0.00 0.00 2.93
7331 9384 1.301401 TCCGCTTCTGTCCGTTTGG 60.301 57.895 0.00 0.00 0.00 3.28
7332 9385 2.325082 CCGCTTCTGTCCGTTTGGG 61.325 63.158 0.00 0.00 35.24 4.12
7333 9386 2.325082 CGCTTCTGTCCGTTTGGGG 61.325 63.158 0.00 0.00 36.01 4.96
7334 9387 1.228154 GCTTCTGTCCGTTTGGGGT 60.228 57.895 0.00 0.00 36.01 4.95
7335 9388 1.515521 GCTTCTGTCCGTTTGGGGTG 61.516 60.000 0.00 0.00 36.01 4.61
7336 9389 0.179029 CTTCTGTCCGTTTGGGGTGT 60.179 55.000 0.00 0.00 36.01 4.16
7337 9390 0.464735 TTCTGTCCGTTTGGGGTGTG 60.465 55.000 0.00 0.00 36.01 3.82
7338 9391 1.147376 CTGTCCGTTTGGGGTGTGA 59.853 57.895 0.00 0.00 36.01 3.58
7339 9392 0.250727 CTGTCCGTTTGGGGTGTGAT 60.251 55.000 0.00 0.00 36.01 3.06
7340 9393 0.183971 TGTCCGTTTGGGGTGTGATT 59.816 50.000 0.00 0.00 36.01 2.57
7341 9394 1.324383 GTCCGTTTGGGGTGTGATTT 58.676 50.000 0.00 0.00 36.01 2.17
7342 9395 1.000717 GTCCGTTTGGGGTGTGATTTG 60.001 52.381 0.00 0.00 36.01 2.32
7343 9396 0.316841 CCGTTTGGGGTGTGATTTGG 59.683 55.000 0.00 0.00 0.00 3.28
7344 9397 0.319469 CGTTTGGGGTGTGATTTGGC 60.319 55.000 0.00 0.00 0.00 4.52
7345 9398 0.319469 GTTTGGGGTGTGATTTGGCG 60.319 55.000 0.00 0.00 0.00 5.69
7346 9399 1.467678 TTTGGGGTGTGATTTGGCGG 61.468 55.000 0.00 0.00 0.00 6.13
7347 9400 2.034999 GGGGTGTGATTTGGCGGA 59.965 61.111 0.00 0.00 0.00 5.54
7348 9401 2.340328 GGGGTGTGATTTGGCGGAC 61.340 63.158 0.00 0.00 0.00 4.79
7349 9402 2.686816 GGGTGTGATTTGGCGGACG 61.687 63.158 0.00 0.00 0.00 4.79
7350 9403 1.964373 GGTGTGATTTGGCGGACGT 60.964 57.895 0.00 0.00 0.00 4.34
7351 9404 1.495951 GTGTGATTTGGCGGACGTC 59.504 57.895 7.13 7.13 0.00 4.34
7352 9405 1.669760 TGTGATTTGGCGGACGTCC 60.670 57.895 25.28 25.28 0.00 4.79
7373 9426 4.047059 GGCGGACAGACGGACGAA 62.047 66.667 0.00 0.00 0.00 3.85
7374 9427 2.049802 GCGGACAGACGGACGAAA 60.050 61.111 0.00 0.00 0.00 3.46
7375 9428 2.087009 GCGGACAGACGGACGAAAG 61.087 63.158 0.00 0.00 0.00 2.62
7386 9439 3.340789 ACGAAAGTCTTTGCGCCC 58.659 55.556 4.18 0.00 44.19 6.13
7387 9440 1.525077 ACGAAAGTCTTTGCGCCCA 60.525 52.632 4.18 0.00 44.19 5.36
7388 9441 1.098712 ACGAAAGTCTTTGCGCCCAA 61.099 50.000 4.18 0.00 44.19 4.12
7389 9442 0.660300 CGAAAGTCTTTGCGCCCAAC 60.660 55.000 4.18 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 5.325239 AGAGATTTCGTTGGGGAGAAAAAT 58.675 37.500 0.00 0.00 39.42 1.82
106 110 4.925861 GCGAGGAGAGCATGGGGC 62.926 72.222 0.00 0.00 45.30 5.80
111 118 0.102120 CGAGAAAGCGAGGAGAGCAT 59.898 55.000 0.00 0.00 37.01 3.79
150 157 1.062525 GCGCCGCAAAGAAATCGAT 59.937 52.632 3.15 0.00 0.00 3.59
151 158 2.478746 GCGCCGCAAAGAAATCGA 59.521 55.556 3.15 0.00 0.00 3.59
188 195 3.063084 GAGGACGAGGACTGCCGT 61.063 66.667 0.00 0.00 42.17 5.68
201 208 1.978580 GACAGGGAAAAGGTGAGAGGA 59.021 52.381 0.00 0.00 0.00 3.71
208 215 1.985895 CCAGGTAGACAGGGAAAAGGT 59.014 52.381 0.00 0.00 0.00 3.50
224 231 1.749334 GACGGGTGATAGAGCCCAGG 61.749 65.000 0.00 0.00 45.07 4.45
318 325 4.354208 AGGGTAGAAATTCAGAGAGGGA 57.646 45.455 0.00 0.00 0.00 4.20
330 337 5.073144 AGTGGAACAGATCAAAGGGTAGAAA 59.927 40.000 0.00 0.00 41.80 2.52
371 384 2.679837 AGCTGCAATTCATCCGTAGTTG 59.320 45.455 1.02 0.00 0.00 3.16
493 506 5.722021 TCACTTCAGTAGCATACACAAGA 57.278 39.130 0.00 0.00 46.26 3.02
536 550 9.078990 AGATATTGAGTACTGATTCCATCGTTA 57.921 33.333 0.00 0.00 0.00 3.18
568 582 6.828785 ACTTACATGGCCCAACTCTTAATTAG 59.171 38.462 0.00 0.00 0.00 1.73
583 597 1.743394 GGTGGCAACTACTTACATGGC 59.257 52.381 0.00 0.00 38.68 4.40
603 617 6.771188 ATTTCGTAGTTCAAAGTCAGACAG 57.229 37.500 2.66 0.00 0.00 3.51
736 752 1.602237 CACGTGGTTGGGGATAGCT 59.398 57.895 7.95 0.00 0.00 3.32
1000 1019 4.179599 GAGGGGAGGGAGGGAGGG 62.180 77.778 0.00 0.00 0.00 4.30
1001 1020 4.179599 GGAGGGGAGGGAGGGAGG 62.180 77.778 0.00 0.00 0.00 4.30
1002 1021 4.548513 CGGAGGGGAGGGAGGGAG 62.549 77.778 0.00 0.00 0.00 4.30
1778 2486 0.179001 AGCGCAAAGGTAACAACCCT 60.179 50.000 11.47 0.00 41.41 4.34
1952 2999 2.599082 GCAAGAGTTATCAGGTTCGTCG 59.401 50.000 0.00 0.00 0.00 5.12
1970 3017 2.952978 ACAAATGACTTAACCACGGCAA 59.047 40.909 0.00 0.00 0.00 4.52
2038 3098 5.243507 TGCAAATATGAGACAAAGGAAAGCA 59.756 36.000 0.00 0.00 0.00 3.91
2153 3244 4.279169 ACAGAAATGTGAAGGAATGTGGTG 59.721 41.667 0.00 0.00 0.00 4.17
2198 3295 2.222027 AGCACAACAAGTAAGGCAGAC 58.778 47.619 0.00 0.00 0.00 3.51
2286 3387 1.001974 TGAGAAACCCATGTCCTGTCG 59.998 52.381 0.00 0.00 0.00 4.35
2364 3465 4.863131 GCAATTTCTTCTTGCTGATGAAGG 59.137 41.667 0.00 5.25 44.36 3.46
2403 3504 4.843728 AGGCGTTCATTCCAATTCTTAGA 58.156 39.130 0.00 0.00 0.00 2.10
2408 3509 2.879826 CCAAGGCGTTCATTCCAATTC 58.120 47.619 0.00 0.00 0.00 2.17
2979 4080 2.353889 CCGGAATTGAGCATCTTCACTG 59.646 50.000 0.00 0.00 34.92 3.66
3165 4266 6.491403 AGTGTTAAACTCTTACCGGTCTTCTA 59.509 38.462 12.40 0.00 31.64 2.10
3218 4319 9.698309 TGTGAAGTAGATCAAGAAAGTTTCTAG 57.302 33.333 18.31 0.00 39.61 2.43
3220 4321 8.964476 TTGTGAAGTAGATCAAGAAAGTTTCT 57.036 30.769 12.50 12.50 43.15 2.52
3242 4343 5.296780 CGAATAATAGGGTGCAGTTCATTGT 59.703 40.000 0.00 0.00 0.00 2.71
3273 4374 5.379732 ACTAAGAGGTGAAGAAGAACTCG 57.620 43.478 0.00 0.00 33.58 4.18
3274 4375 7.888424 ACTAACTAAGAGGTGAAGAAGAACTC 58.112 38.462 0.00 0.00 0.00 3.01
3275 4376 7.842887 ACTAACTAAGAGGTGAAGAAGAACT 57.157 36.000 0.00 0.00 0.00 3.01
3276 4377 9.978044 TTAACTAACTAAGAGGTGAAGAAGAAC 57.022 33.333 0.00 0.00 0.00 3.01
3592 4693 6.670695 AAAAATAAGCCTCACAACAGGAAT 57.329 33.333 0.00 0.00 35.20 3.01
3615 4716 7.805163 ACTTGATGGTTATGAATGTGGAGATA 58.195 34.615 0.00 0.00 0.00 1.98
3640 4741 1.759445 GGTGGCATTCTAGAGCTCAGA 59.241 52.381 17.77 13.54 0.00 3.27
3791 4892 3.181499 CGGATTCTTGCGACTACTGTAGT 60.181 47.826 19.79 19.79 42.86 2.73
3899 5000 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
3900 5001 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3901 5002 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3902 5003 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3903 5004 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3904 5005 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3905 5006 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
3906 5007 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
3907 5008 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
3908 5009 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3909 5010 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
3910 5011 9.205916 CGTGTCAAAAACGTTCTTATATTATGG 57.794 33.333 0.00 0.00 36.31 2.74
3935 5036 8.266682 CCATAATATAAGAACGTCTTTGACACG 58.733 37.037 5.74 0.00 43.13 4.49
3936 5037 8.548721 CCCATAATATAAGAACGTCTTTGACAC 58.451 37.037 5.74 0.00 37.89 3.67
3937 5038 8.479689 TCCCATAATATAAGAACGTCTTTGACA 58.520 33.333 5.74 0.00 37.89 3.58
3938 5039 8.762426 GTCCCATAATATAAGAACGTCTTTGAC 58.238 37.037 5.74 0.00 37.89 3.18
3939 5040 7.650504 CGTCCCATAATATAAGAACGTCTTTGA 59.349 37.037 5.74 0.00 37.89 2.69
3940 5041 7.095774 CCGTCCCATAATATAAGAACGTCTTTG 60.096 40.741 5.74 0.00 37.89 2.77
3941 5042 6.927381 CCGTCCCATAATATAAGAACGTCTTT 59.073 38.462 5.74 0.00 37.89 2.52
3942 5043 6.266103 TCCGTCCCATAATATAAGAACGTCTT 59.734 38.462 0.00 0.00 40.35 3.01
3943 5044 5.771666 TCCGTCCCATAATATAAGAACGTCT 59.228 40.000 0.00 0.00 0.00 4.18
3944 5045 6.017400 TCCGTCCCATAATATAAGAACGTC 57.983 41.667 0.00 0.00 0.00 4.34
3945 5046 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3946 5047 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3947 5048 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3948 5049 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3949 5050 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3950 5051 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3951 5052 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3952 5053 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3953 5054 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3954 5055 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3955 5056 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3956 5057 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3957 5058 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3958 5059 1.229131 TACTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
3959 5060 1.229131 ATACTACTCCCTCCGTCCCA 58.771 55.000 0.00 0.00 0.00 4.37
3960 5061 2.378378 AATACTACTCCCTCCGTCCC 57.622 55.000 0.00 0.00 0.00 4.46
3961 5062 4.280425 CCTAAAATACTACTCCCTCCGTCC 59.720 50.000 0.00 0.00 0.00 4.79
3962 5063 4.261952 GCCTAAAATACTACTCCCTCCGTC 60.262 50.000 0.00 0.00 0.00 4.79
3963 5064 3.640498 GCCTAAAATACTACTCCCTCCGT 59.360 47.826 0.00 0.00 0.00 4.69
3964 5065 3.640029 TGCCTAAAATACTACTCCCTCCG 59.360 47.826 0.00 0.00 0.00 4.63
3965 5066 5.625568 TTGCCTAAAATACTACTCCCTCC 57.374 43.478 0.00 0.00 0.00 4.30
3966 5067 9.623000 TTAAATTGCCTAAAATACTACTCCCTC 57.377 33.333 0.00 0.00 0.00 4.30
3967 5068 9.628500 CTTAAATTGCCTAAAATACTACTCCCT 57.372 33.333 0.00 0.00 0.00 4.20
3968 5069 9.623000 TCTTAAATTGCCTAAAATACTACTCCC 57.377 33.333 0.00 0.00 0.00 4.30
4037 5138 5.050769 CGATTGATTCAATTACCAGACTCCG 60.051 44.000 12.96 4.74 33.90 4.63
4116 5217 3.949754 CACAGCACTCCCATGAACATAAT 59.050 43.478 0.00 0.00 0.00 1.28
4344 5446 7.213678 TGTAGACAACATCACAGACATGTTAA 58.786 34.615 0.00 0.00 41.58 2.01
4439 5541 1.270550 CCAACACCAGCCATCAACTTC 59.729 52.381 0.00 0.00 0.00 3.01
4553 5655 3.450817 GGGGCTTTACCTGTATTTGCAAT 59.549 43.478 0.00 0.00 39.10 3.56
4594 5696 8.528044 AAATTTGTCCCAAAGTAGACTAAACA 57.472 30.769 0.00 0.00 32.83 2.83
4607 5709 5.659079 ACTACCAGAACAAAATTTGTCCCAA 59.341 36.000 12.11 0.00 44.59 4.12
4685 5788 9.477484 CACCTTCTCTTAATATATACACACACC 57.523 37.037 0.00 0.00 0.00 4.16
4747 6176 4.829872 ATTGGTGGCAAATCATTGATGT 57.170 36.364 0.00 0.00 38.94 3.06
4798 6227 8.074474 TGTAGCATTGTCAATTGTTTGAAATG 57.926 30.769 5.13 10.10 43.29 2.32
4828 6257 6.055588 TGTTAGACACAGGAAGAAAGAAAGG 58.944 40.000 0.00 0.00 0.00 3.11
4893 6322 6.668541 TCTAGATTGAATACAGCAGCAAAC 57.331 37.500 0.00 0.00 0.00 2.93
4946 6375 4.222810 TGGATATCTACCATCCATTGACGG 59.777 45.833 2.05 0.00 45.57 4.79
4983 6412 4.207891 AGATTGTATCAAGCCACGTCTT 57.792 40.909 0.00 0.00 0.00 3.01
4987 6416 4.944962 TTCAAGATTGTATCAAGCCACG 57.055 40.909 0.00 0.00 0.00 4.94
5026 6455 4.021192 CCCAAATCATTTGCTGGTACAACT 60.021 41.667 4.40 0.00 39.31 3.16
5143 6572 9.712305 AAAGGGAGAACATAATCATACGAATAG 57.288 33.333 0.00 0.00 0.00 1.73
5304 6735 3.485394 TGCATAGAAGTGCCAACAAAGA 58.515 40.909 0.00 0.00 44.43 2.52
5313 6744 3.837213 TTCAAAGCTGCATAGAAGTGC 57.163 42.857 1.02 0.00 45.25 4.40
5330 6761 4.130857 TGCACATAAAGAACTCGGTTTCA 58.869 39.130 0.00 0.00 0.00 2.69
5963 7435 1.526917 ATATGGAGGTTGCTGCGGC 60.527 57.895 11.65 11.65 39.26 6.53
6150 7999 4.753662 AGGAGGGTACGCGCCTGA 62.754 66.667 29.96 0.00 29.29 3.86
6271 8120 6.986231 CAGTATGCCAGTATACACAAGAATGA 59.014 38.462 5.50 0.00 36.27 2.57
6552 8411 3.691609 GGATGTGTGAATTGGTTCTCTCC 59.308 47.826 0.00 0.00 35.33 3.71
6565 8424 2.876550 CGGACTAGATACGGATGTGTGA 59.123 50.000 0.00 0.00 0.00 3.58
6568 8427 1.607148 TGCGGACTAGATACGGATGTG 59.393 52.381 0.00 0.00 0.00 3.21
6570 8429 3.057526 TCAATGCGGACTAGATACGGATG 60.058 47.826 11.42 7.59 38.64 3.51
6571 8430 3.154710 TCAATGCGGACTAGATACGGAT 58.845 45.455 0.00 1.60 40.35 4.18
6574 8433 5.907197 AATTTCAATGCGGACTAGATACG 57.093 39.130 0.00 0.00 0.00 3.06
6575 8434 7.484035 AGAAATTTCAATGCGGACTAGATAC 57.516 36.000 19.99 0.00 0.00 2.24
6576 8435 9.607988 TTTAGAAATTTCAATGCGGACTAGATA 57.392 29.630 19.99 0.00 0.00 1.98
6577 8436 8.506168 TTTAGAAATTTCAATGCGGACTAGAT 57.494 30.769 19.99 0.00 0.00 1.98
6581 8440 6.208599 TCCTTTTAGAAATTTCAATGCGGACT 59.791 34.615 19.99 0.00 0.00 3.85
6584 8443 6.389906 AGTCCTTTTAGAAATTTCAATGCGG 58.610 36.000 19.99 13.49 0.00 5.69
6585 8444 7.873739 AAGTCCTTTTAGAAATTTCAATGCG 57.126 32.000 19.99 5.57 0.00 4.73
6616 8475 9.406828 GTCTTTTTAGAAATTTTAATGCGGACT 57.593 29.630 0.00 0.00 0.00 3.85
6617 8476 9.406828 AGTCTTTTTAGAAATTTTAATGCGGAC 57.593 29.630 0.00 0.00 0.00 4.79
6645 8504 9.145442 GGTAGTACTTCCTCTGTTCCTAAATAT 57.855 37.037 11.11 0.00 0.00 1.28
6646 8505 8.342270 AGGTAGTACTTCCTCTGTTCCTAAATA 58.658 37.037 14.91 0.00 0.00 1.40
6647 8506 7.190501 AGGTAGTACTTCCTCTGTTCCTAAAT 58.809 38.462 14.91 0.00 0.00 1.40
6648 8507 6.559429 AGGTAGTACTTCCTCTGTTCCTAAA 58.441 40.000 14.91 0.00 0.00 1.85
6649 8508 6.150034 AGGTAGTACTTCCTCTGTTCCTAA 57.850 41.667 14.91 0.00 0.00 2.69
6650 8509 5.793034 AGGTAGTACTTCCTCTGTTCCTA 57.207 43.478 14.91 0.00 0.00 2.94
6652 8511 5.259632 TGTAGGTAGTACTTCCTCTGTTCC 58.740 45.833 22.99 7.54 35.51 3.62
6653 8512 7.122353 TGAATGTAGGTAGTACTTCCTCTGTTC 59.878 40.741 22.99 21.53 35.51 3.18
6654 8513 6.952358 TGAATGTAGGTAGTACTTCCTCTGTT 59.048 38.462 22.99 15.52 35.51 3.16
6655 8514 6.491383 TGAATGTAGGTAGTACTTCCTCTGT 58.509 40.000 22.99 8.62 35.51 3.41
6656 8515 7.429633 CATGAATGTAGGTAGTACTTCCTCTG 58.570 42.308 22.99 8.13 35.51 3.35
6657 8516 6.041069 GCATGAATGTAGGTAGTACTTCCTCT 59.959 42.308 22.99 8.09 35.51 3.69
6658 8517 6.183360 TGCATGAATGTAGGTAGTACTTCCTC 60.183 42.308 22.99 15.14 35.51 3.71
6660 8519 5.914033 TGCATGAATGTAGGTAGTACTTCC 58.086 41.667 10.44 10.44 32.19 3.46
6661 8520 6.073548 GCATGCATGAATGTAGGTAGTACTTC 60.074 42.308 30.64 0.00 32.19 3.01
6662 8521 5.760253 GCATGCATGAATGTAGGTAGTACTT 59.240 40.000 30.64 0.00 32.19 2.24
6663 8522 5.163311 TGCATGCATGAATGTAGGTAGTACT 60.163 40.000 30.64 0.00 32.19 2.73
6664 8523 5.056480 TGCATGCATGAATGTAGGTAGTAC 58.944 41.667 30.64 7.50 0.00 2.73
6716 8763 9.574516 AAGAAGTACATCAAAACTTTGTATCCT 57.425 29.630 0.31 0.00 36.10 3.24
6722 8769 7.277174 AGGGAAGAAGTACATCAAAACTTTG 57.723 36.000 0.31 0.00 36.10 2.77
6739 8786 6.210784 CACTATATTATGGAACGGAGGGAAGA 59.789 42.308 0.00 0.00 0.00 2.87
6741 8788 5.279809 GCACTATATTATGGAACGGAGGGAA 60.280 44.000 0.00 0.00 0.00 3.97
6857 8907 6.536447 GTTTTTATATTATGGGACGGAGGGA 58.464 40.000 0.00 0.00 0.00 4.20
6858 8908 5.410439 CGTTTTTATATTATGGGACGGAGGG 59.590 44.000 0.00 0.00 0.00 4.30
6859 8909 5.993441 ACGTTTTTATATTATGGGACGGAGG 59.007 40.000 0.00 0.00 33.95 4.30
6860 8910 7.486802 AACGTTTTTATATTATGGGACGGAG 57.513 36.000 0.00 0.00 33.95 4.63
6861 8911 7.862512 AAACGTTTTTATATTATGGGACGGA 57.137 32.000 7.96 0.00 33.95 4.69
6862 8912 8.182881 TCAAAACGTTTTTATATTATGGGACGG 58.817 33.333 23.14 6.86 33.95 4.79
6863 8913 9.002080 GTCAAAACGTTTTTATATTATGGGACG 57.998 33.333 23.14 7.47 35.59 4.79
6864 8914 9.843334 TGTCAAAACGTTTTTATATTATGGGAC 57.157 29.630 23.14 20.45 0.00 4.46
6865 8915 9.843334 GTGTCAAAACGTTTTTATATTATGGGA 57.157 29.630 23.14 10.67 0.00 4.37
6866 8916 9.849166 AGTGTCAAAACGTTTTTATATTATGGG 57.151 29.630 23.14 8.56 0.00 4.00
6904 8954 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
6905 8955 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
6906 8956 7.881232 TCTCTGTCCCAAAATATAAGAACGTTT 59.119 33.333 0.46 0.00 0.00 3.60
6907 8957 7.391620 TCTCTGTCCCAAAATATAAGAACGTT 58.608 34.615 0.00 0.00 0.00 3.99
6908 8958 6.942976 TCTCTGTCCCAAAATATAAGAACGT 58.057 36.000 0.00 0.00 0.00 3.99
6909 8959 7.265673 TCTCTCTGTCCCAAAATATAAGAACG 58.734 38.462 0.00 0.00 0.00 3.95
6910 8960 8.261522 ACTCTCTCTGTCCCAAAATATAAGAAC 58.738 37.037 0.00 0.00 0.00 3.01
6911 8961 8.380742 ACTCTCTCTGTCCCAAAATATAAGAA 57.619 34.615 0.00 0.00 0.00 2.52
6912 8962 7.979786 ACTCTCTCTGTCCCAAAATATAAGA 57.020 36.000 0.00 0.00 0.00 2.10
6913 8963 9.703892 CATACTCTCTCTGTCCCAAAATATAAG 57.296 37.037 0.00 0.00 0.00 1.73
6914 8964 9.434275 TCATACTCTCTCTGTCCCAAAATATAA 57.566 33.333 0.00 0.00 0.00 0.98
6915 8965 9.434275 TTCATACTCTCTCTGTCCCAAAATATA 57.566 33.333 0.00 0.00 0.00 0.86
6916 8966 7.921041 TCATACTCTCTCTGTCCCAAAATAT 57.079 36.000 0.00 0.00 0.00 1.28
6917 8967 7.733773 TTCATACTCTCTCTGTCCCAAAATA 57.266 36.000 0.00 0.00 0.00 1.40
6918 8968 6.627087 TTCATACTCTCTCTGTCCCAAAAT 57.373 37.500 0.00 0.00 0.00 1.82
6919 8969 6.043243 AGTTTCATACTCTCTCTGTCCCAAAA 59.957 38.462 0.00 0.00 28.23 2.44
6920 8970 5.544176 AGTTTCATACTCTCTCTGTCCCAAA 59.456 40.000 0.00 0.00 28.23 3.28
6921 8971 5.087323 AGTTTCATACTCTCTCTGTCCCAA 58.913 41.667 0.00 0.00 28.23 4.12
6922 8972 4.678256 AGTTTCATACTCTCTCTGTCCCA 58.322 43.478 0.00 0.00 28.23 4.37
6923 8973 5.652891 TGTAGTTTCATACTCTCTCTGTCCC 59.347 44.000 0.00 0.00 38.33 4.46
6924 8974 6.761099 TGTAGTTTCATACTCTCTCTGTCC 57.239 41.667 0.00 0.00 38.33 4.02
6925 8975 8.220755 AGATGTAGTTTCATACTCTCTCTGTC 57.779 38.462 0.00 0.00 38.33 3.51
6926 8976 8.588290 AAGATGTAGTTTCATACTCTCTCTGT 57.412 34.615 0.00 0.00 38.33 3.41
7066 9118 6.989659 TGTAGTTCATATATTCCCTCCGTTC 58.010 40.000 0.00 0.00 0.00 3.95
7089 9142 3.097877 TGAACACTGCAGACTACACTG 57.902 47.619 23.35 8.81 40.43 3.66
7090 9143 3.133003 ACTTGAACACTGCAGACTACACT 59.867 43.478 23.35 0.00 0.00 3.55
7114 9167 2.501008 TCATGTGTCGTCGCGTCG 60.501 61.111 19.46 19.46 0.00 5.12
7116 9169 2.014554 GTGTCATGTGTCGTCGCGT 61.015 57.895 5.77 0.00 0.00 6.01
7120 9173 1.282248 CCACCGTGTCATGTGTCGTC 61.282 60.000 0.00 0.00 0.00 4.20
7160 9213 4.708386 TTTACCCCACTGCGCCCG 62.708 66.667 4.18 0.00 0.00 6.13
7169 9222 1.305718 GCCCATGCCTTTTACCCCA 60.306 57.895 0.00 0.00 0.00 4.96
7230 9283 3.052082 GCATGCCAGCGTCACACT 61.052 61.111 6.36 0.00 0.00 3.55
7264 9317 0.322546 GGTGGAGTTGGCCTTGTAGG 60.323 60.000 3.32 0.00 38.80 3.18
7265 9318 0.673644 CGGTGGAGTTGGCCTTGTAG 60.674 60.000 3.32 0.00 0.00 2.74
7266 9319 1.373435 CGGTGGAGTTGGCCTTGTA 59.627 57.895 3.32 0.00 0.00 2.41
7267 9320 2.113139 CGGTGGAGTTGGCCTTGT 59.887 61.111 3.32 0.00 0.00 3.16
7268 9321 3.365265 GCGGTGGAGTTGGCCTTG 61.365 66.667 3.32 0.00 0.00 3.61
7269 9322 3.210012 ATGCGGTGGAGTTGGCCTT 62.210 57.895 3.32 0.00 0.00 4.35
7270 9323 3.650950 ATGCGGTGGAGTTGGCCT 61.651 61.111 3.32 0.00 0.00 5.19
7271 9324 3.443045 CATGCGGTGGAGTTGGCC 61.443 66.667 0.00 0.00 0.00 5.36
7280 9333 1.024046 TCGAAATGGGTCATGCGGTG 61.024 55.000 0.00 0.00 0.00 4.94
7284 9337 1.017387 GAGGTCGAAATGGGTCATGC 58.983 55.000 0.00 0.00 0.00 4.06
7285 9338 2.401583 TGAGGTCGAAATGGGTCATG 57.598 50.000 0.00 0.00 0.00 3.07
7286 9339 3.081804 GTTTGAGGTCGAAATGGGTCAT 58.918 45.455 0.00 0.00 0.00 3.06
7287 9340 2.500229 GTTTGAGGTCGAAATGGGTCA 58.500 47.619 0.00 0.00 0.00 4.02
7288 9341 1.463444 CGTTTGAGGTCGAAATGGGTC 59.537 52.381 0.00 0.00 0.00 4.46
7289 9342 1.519408 CGTTTGAGGTCGAAATGGGT 58.481 50.000 0.00 0.00 0.00 4.51
7290 9343 0.802494 CCGTTTGAGGTCGAAATGGG 59.198 55.000 0.00 0.00 36.28 4.00
7292 9345 1.126113 CGTCCGTTTGAGGTCGAAATG 59.874 52.381 0.00 0.00 43.59 2.32
7294 9347 0.102844 ACGTCCGTTTGAGGTCGAAA 59.897 50.000 9.34 0.00 43.59 3.46
7295 9348 0.318107 GACGTCCGTTTGAGGTCGAA 60.318 55.000 3.51 0.00 45.71 3.71
7296 9349 1.283793 GACGTCCGTTTGAGGTCGA 59.716 57.895 3.51 0.00 45.71 4.20
7297 9350 3.838468 GACGTCCGTTTGAGGTCG 58.162 61.111 3.51 1.55 45.71 4.79
7308 9361 2.126031 GGACAGAAGCGGACGTCC 60.126 66.667 25.28 25.28 41.08 4.79
7309 9362 2.504244 CGGACAGAAGCGGACGTC 60.504 66.667 7.13 7.13 0.00 4.34
7310 9363 2.359570 AAACGGACAGAAGCGGACGT 62.360 55.000 0.00 0.00 35.95 4.34
7311 9364 1.663702 AAACGGACAGAAGCGGACG 60.664 57.895 0.00 0.00 0.00 4.79
7312 9365 1.566018 CCAAACGGACAGAAGCGGAC 61.566 60.000 0.00 0.00 0.00 4.79
7313 9366 1.301401 CCAAACGGACAGAAGCGGA 60.301 57.895 0.00 0.00 0.00 5.54
7314 9367 2.325082 CCCAAACGGACAGAAGCGG 61.325 63.158 0.00 0.00 0.00 5.52
7315 9368 2.325082 CCCCAAACGGACAGAAGCG 61.325 63.158 0.00 0.00 0.00 4.68
7316 9369 1.228154 ACCCCAAACGGACAGAAGC 60.228 57.895 0.00 0.00 0.00 3.86
7317 9370 0.179029 ACACCCCAAACGGACAGAAG 60.179 55.000 0.00 0.00 0.00 2.85
7318 9371 0.464735 CACACCCCAAACGGACAGAA 60.465 55.000 0.00 0.00 0.00 3.02
7319 9372 1.147376 CACACCCCAAACGGACAGA 59.853 57.895 0.00 0.00 0.00 3.41
7320 9373 0.250727 ATCACACCCCAAACGGACAG 60.251 55.000 0.00 0.00 0.00 3.51
7321 9374 0.183971 AATCACACCCCAAACGGACA 59.816 50.000 0.00 0.00 0.00 4.02
7322 9375 1.000717 CAAATCACACCCCAAACGGAC 60.001 52.381 0.00 0.00 0.00 4.79
7323 9376 1.323412 CAAATCACACCCCAAACGGA 58.677 50.000 0.00 0.00 0.00 4.69
7324 9377 0.316841 CCAAATCACACCCCAAACGG 59.683 55.000 0.00 0.00 0.00 4.44
7325 9378 0.319469 GCCAAATCACACCCCAAACG 60.319 55.000 0.00 0.00 0.00 3.60
7326 9379 0.319469 CGCCAAATCACACCCCAAAC 60.319 55.000 0.00 0.00 0.00 2.93
7327 9380 1.467678 CCGCCAAATCACACCCCAAA 61.468 55.000 0.00 0.00 0.00 3.28
7328 9381 1.905843 CCGCCAAATCACACCCCAA 60.906 57.895 0.00 0.00 0.00 4.12
7329 9382 2.282816 CCGCCAAATCACACCCCA 60.283 61.111 0.00 0.00 0.00 4.96
7330 9383 2.034999 TCCGCCAAATCACACCCC 59.965 61.111 0.00 0.00 0.00 4.95
7331 9384 2.686816 CGTCCGCCAAATCACACCC 61.687 63.158 0.00 0.00 0.00 4.61
7332 9385 1.908066 GACGTCCGCCAAATCACACC 61.908 60.000 3.51 0.00 0.00 4.16
7333 9386 1.495951 GACGTCCGCCAAATCACAC 59.504 57.895 3.51 0.00 0.00 3.82
7334 9387 1.669760 GGACGTCCGCCAAATCACA 60.670 57.895 20.85 0.00 0.00 3.58
7335 9388 3.174788 GGACGTCCGCCAAATCAC 58.825 61.111 20.85 0.00 0.00 3.06
7356 9409 3.562779 TTTCGTCCGTCTGTCCGCC 62.563 63.158 0.00 0.00 0.00 6.13
7357 9410 2.049802 TTTCGTCCGTCTGTCCGC 60.050 61.111 0.00 0.00 0.00 5.54
7358 9411 0.728466 GACTTTCGTCCGTCTGTCCG 60.728 60.000 0.00 0.00 33.98 4.79
7359 9412 0.597072 AGACTTTCGTCCGTCTGTCC 59.403 55.000 0.00 0.00 41.16 4.02
7360 9413 2.418983 AAGACTTTCGTCCGTCTGTC 57.581 50.000 0.00 0.00 40.18 3.51
7361 9414 2.470821 CAAAGACTTTCGTCCGTCTGT 58.529 47.619 0.00 0.00 40.18 3.41
7362 9415 1.192534 GCAAAGACTTTCGTCCGTCTG 59.807 52.381 0.00 0.00 40.18 3.51
7363 9416 1.499049 GCAAAGACTTTCGTCCGTCT 58.501 50.000 0.00 0.00 41.97 4.18
7364 9417 0.161024 CGCAAAGACTTTCGTCCGTC 59.839 55.000 0.00 0.00 41.16 4.79
7365 9418 1.828331 GCGCAAAGACTTTCGTCCGT 61.828 55.000 0.30 0.00 41.16 4.69
7366 9419 1.154654 GCGCAAAGACTTTCGTCCG 60.155 57.895 0.30 10.20 41.16 4.79
7367 9420 1.206831 GGCGCAAAGACTTTCGTCC 59.793 57.895 10.83 14.07 41.16 4.79
7368 9421 1.206831 GGGCGCAAAGACTTTCGTC 59.793 57.895 10.83 14.46 40.54 4.20
7369 9422 1.098712 TTGGGCGCAAAGACTTTCGT 61.099 50.000 14.56 0.00 0.00 3.85
7370 9423 0.660300 GTTGGGCGCAAAGACTTTCG 60.660 55.000 18.70 12.51 0.00 3.46
7371 9424 0.660300 CGTTGGGCGCAAAGACTTTC 60.660 55.000 21.85 5.85 0.00 2.62
7372 9425 1.358759 CGTTGGGCGCAAAGACTTT 59.641 52.632 21.85 0.00 0.00 2.66
7373 9426 3.030652 CGTTGGGCGCAAAGACTT 58.969 55.556 21.85 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.