Multiple sequence alignment - TraesCS1B01G180800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G180800 chr1B 100.000 3122 0 0 1 3122 327359657 327362778 0.000000e+00 5766.0
1 TraesCS1B01G180800 chr1A 90.376 2338 162 34 606 2933 295225115 295222831 0.000000e+00 3013.0
2 TraesCS1B01G180800 chr1A 82.667 75 9 4 522 593 60951590 60951663 2.600000e-06 63.9
3 TraesCS1B01G180800 chr1D 93.369 1689 83 9 607 2285 227730591 227732260 0.000000e+00 2471.0
4 TraesCS1B01G180800 chr1D 92.642 1658 73 12 633 2285 208398618 208397005 0.000000e+00 2340.0
5 TraesCS1B01G180800 chr1D 84.438 694 98 4 2410 3093 461900433 461901126 0.000000e+00 675.0
6 TraesCS1B01G180800 chr5B 84.993 693 95 3 2410 3093 614364226 614364918 0.000000e+00 695.0
7 TraesCS1B01G180800 chr5B 84.604 695 95 6 2410 3093 9668700 9668007 0.000000e+00 680.0
8 TraesCS1B01G180800 chr5B 81.288 823 112 23 2285 3093 596874421 596873627 2.040000e-176 628.0
9 TraesCS1B01G180800 chr5B 80.576 139 20 6 454 585 684084452 684084590 1.980000e-17 100.0
10 TraesCS1B01G180800 chr5B 90.909 66 6 0 449 514 33891196 33891261 4.290000e-14 89.8
11 TraesCS1B01G180800 chr5B 88.710 62 6 1 539 599 353938670 353938609 1.200000e-09 75.0
12 TraesCS1B01G180800 chr7B 84.870 694 95 4 2410 3093 712852709 712853402 0.000000e+00 691.0
13 TraesCS1B01G180800 chr7B 84.604 695 97 4 2409 3093 632802290 632802984 0.000000e+00 682.0
14 TraesCS1B01G180800 chr7B 88.889 72 6 2 449 519 683975828 683975898 1.540000e-13 87.9
15 TraesCS1B01G180800 chr4B 82.346 827 112 15 2278 3093 67922757 67923560 0.000000e+00 688.0
16 TraesCS1B01G180800 chr4B 80.414 822 104 24 2285 3093 17830532 17829755 9.710000e-160 573.0
17 TraesCS1B01G180800 chr4D 82.260 823 117 15 2278 3093 497938125 497937325 0.000000e+00 684.0
18 TraesCS1B01G180800 chr5D 82.195 820 113 14 2285 3093 423231214 423232011 0.000000e+00 675.0
19 TraesCS1B01G180800 chr5D 83.673 147 11 5 452 585 42820068 42819922 3.270000e-25 126.0
20 TraesCS1B01G180800 chr5D 77.419 155 15 11 454 589 470376407 470376560 1.200000e-09 75.0
21 TraesCS1B01G180800 chr2B 84.362 697 99 4 2410 3097 43724046 43723351 0.000000e+00 675.0
22 TraesCS1B01G180800 chr2B 81.387 822 117 18 2285 3093 627062428 627063226 3.400000e-179 638.0
23 TraesCS1B01G180800 chr4A 81.851 821 111 18 2285 3093 673797735 673798529 0.000000e+00 656.0
24 TraesCS1B01G180800 chr3B 81.273 833 122 13 2278 3100 798154402 798155210 0.000000e+00 643.0
25 TraesCS1B01G180800 chr3B 80.900 822 122 14 2284 3093 42051929 42051131 1.590000e-172 616.0
26 TraesCS1B01G180800 chr3B 80.708 819 126 17 2285 3093 679196512 679195716 2.660000e-170 608.0
27 TraesCS1B01G180800 chr3B 91.549 71 6 0 449 519 598998592 598998662 7.130000e-17 99.0
28 TraesCS1B01G180800 chr3B 78.912 147 16 9 454 585 783113559 783113413 5.550000e-13 86.1
29 TraesCS1B01G180800 chr2D 81.706 809 113 17 2296 3093 621349085 621349869 2.620000e-180 641.0
30 TraesCS1B01G180800 chr2D 87.500 64 4 3 73 134 16981292 16981231 1.550000e-08 71.3
31 TraesCS1B01G180800 chr2D 85.938 64 5 3 73 134 16867060 16866999 7.230000e-07 65.8
32 TraesCS1B01G180800 chr6A 92.857 70 5 0 450 519 41670127 41670196 5.510000e-18 102.0
33 TraesCS1B01G180800 chr6B 93.846 65 4 0 450 514 41980204 41980268 7.130000e-17 99.0
34 TraesCS1B01G180800 chr3A 90.909 66 6 0 454 519 147810059 147809994 4.290000e-14 89.8
35 TraesCS1B01G180800 chr3A 77.124 153 19 11 459 595 264949164 264949012 1.200000e-09 75.0
36 TraesCS1B01G180800 chr6D 86.301 73 10 0 459 531 313962177 313962105 2.580000e-11 80.5
37 TraesCS1B01G180800 chr7D 78.322 143 12 7 454 577 559669135 559668993 1.200000e-09 75.0
38 TraesCS1B01G180800 chr2A 77.551 147 17 11 459 589 622266488 622266634 1.200000e-09 75.0
39 TraesCS1B01G180800 chr2A 95.349 43 1 1 536 577 440914550 440914508 2.010000e-07 67.6
40 TraesCS1B01G180800 chrUn 85.938 64 5 3 73 134 24227236 24227175 7.230000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G180800 chr1B 327359657 327362778 3121 False 5766 5766 100.000 1 3122 1 chr1B.!!$F1 3121
1 TraesCS1B01G180800 chr1A 295222831 295225115 2284 True 3013 3013 90.376 606 2933 1 chr1A.!!$R1 2327
2 TraesCS1B01G180800 chr1D 227730591 227732260 1669 False 2471 2471 93.369 607 2285 1 chr1D.!!$F1 1678
3 TraesCS1B01G180800 chr1D 208397005 208398618 1613 True 2340 2340 92.642 633 2285 1 chr1D.!!$R1 1652
4 TraesCS1B01G180800 chr1D 461900433 461901126 693 False 675 675 84.438 2410 3093 1 chr1D.!!$F2 683
5 TraesCS1B01G180800 chr5B 614364226 614364918 692 False 695 695 84.993 2410 3093 1 chr5B.!!$F2 683
6 TraesCS1B01G180800 chr5B 9668007 9668700 693 True 680 680 84.604 2410 3093 1 chr5B.!!$R1 683
7 TraesCS1B01G180800 chr5B 596873627 596874421 794 True 628 628 81.288 2285 3093 1 chr5B.!!$R3 808
8 TraesCS1B01G180800 chr7B 712852709 712853402 693 False 691 691 84.870 2410 3093 1 chr7B.!!$F3 683
9 TraesCS1B01G180800 chr7B 632802290 632802984 694 False 682 682 84.604 2409 3093 1 chr7B.!!$F1 684
10 TraesCS1B01G180800 chr4B 67922757 67923560 803 False 688 688 82.346 2278 3093 1 chr4B.!!$F1 815
11 TraesCS1B01G180800 chr4B 17829755 17830532 777 True 573 573 80.414 2285 3093 1 chr4B.!!$R1 808
12 TraesCS1B01G180800 chr4D 497937325 497938125 800 True 684 684 82.260 2278 3093 1 chr4D.!!$R1 815
13 TraesCS1B01G180800 chr5D 423231214 423232011 797 False 675 675 82.195 2285 3093 1 chr5D.!!$F1 808
14 TraesCS1B01G180800 chr2B 43723351 43724046 695 True 675 675 84.362 2410 3097 1 chr2B.!!$R1 687
15 TraesCS1B01G180800 chr2B 627062428 627063226 798 False 638 638 81.387 2285 3093 1 chr2B.!!$F1 808
16 TraesCS1B01G180800 chr4A 673797735 673798529 794 False 656 656 81.851 2285 3093 1 chr4A.!!$F1 808
17 TraesCS1B01G180800 chr3B 798154402 798155210 808 False 643 643 81.273 2278 3100 1 chr3B.!!$F2 822
18 TraesCS1B01G180800 chr3B 42051131 42051929 798 True 616 616 80.900 2284 3093 1 chr3B.!!$R1 809
19 TraesCS1B01G180800 chr3B 679195716 679196512 796 True 608 608 80.708 2285 3093 1 chr3B.!!$R2 808
20 TraesCS1B01G180800 chr2D 621349085 621349869 784 False 641 641 81.706 2296 3093 1 chr2D.!!$F1 797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.032815 GGAAGGCGCATCTCCTAGTC 59.967 60.0 10.83 0.0 32.65 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2164 2177 0.259938 GATGGACAGCCCTCCCAAAT 59.74 55.0 0.0 0.0 33.15 2.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.187594 CAAATGTGGAATCGACGATGAG 57.812 45.455 11.83 0.00 0.00 2.90
26 27 2.515926 ATGTGGAATCGACGATGAGG 57.484 50.000 11.83 0.00 0.00 3.86
27 28 1.470051 TGTGGAATCGACGATGAGGA 58.530 50.000 11.83 0.00 0.00 3.71
28 29 1.405463 TGTGGAATCGACGATGAGGAG 59.595 52.381 11.83 0.00 0.00 3.69
29 30 1.032794 TGGAATCGACGATGAGGAGG 58.967 55.000 11.83 0.00 0.00 4.30
30 31 0.319125 GGAATCGACGATGAGGAGGC 60.319 60.000 11.83 0.00 0.00 4.70
31 32 0.319125 GAATCGACGATGAGGAGGCC 60.319 60.000 11.83 0.00 0.00 5.19
32 33 1.043116 AATCGACGATGAGGAGGCCA 61.043 55.000 11.83 0.00 0.00 5.36
33 34 1.043116 ATCGACGATGAGGAGGCCAA 61.043 55.000 10.09 0.00 0.00 4.52
34 35 1.519455 CGACGATGAGGAGGCCAAC 60.519 63.158 5.01 0.00 0.00 3.77
35 36 1.519455 GACGATGAGGAGGCCAACG 60.519 63.158 5.01 0.00 36.18 4.10
36 37 2.892425 CGATGAGGAGGCCAACGC 60.892 66.667 5.01 0.00 0.00 4.84
37 38 2.586792 GATGAGGAGGCCAACGCT 59.413 61.111 5.01 0.00 34.44 5.07
38 39 1.823295 GATGAGGAGGCCAACGCTA 59.177 57.895 5.01 0.00 34.44 4.26
39 40 0.249657 GATGAGGAGGCCAACGCTAG 60.250 60.000 5.01 0.00 34.44 3.42
40 41 0.978146 ATGAGGAGGCCAACGCTAGT 60.978 55.000 5.01 0.00 34.44 2.57
41 42 1.142097 GAGGAGGCCAACGCTAGTC 59.858 63.158 5.01 0.00 34.44 2.59
42 43 2.202756 GGAGGCCAACGCTAGTCG 60.203 66.667 5.01 5.24 45.38 4.18
43 44 2.202756 GAGGCCAACGCTAGTCGG 60.203 66.667 5.01 0.00 43.86 4.79
44 45 2.678934 AGGCCAACGCTAGTCGGA 60.679 61.111 5.01 0.00 43.86 4.55
45 46 2.221906 GAGGCCAACGCTAGTCGGAA 62.222 60.000 5.01 0.00 43.86 4.30
46 47 2.098831 GGCCAACGCTAGTCGGAAC 61.099 63.158 0.00 0.00 43.86 3.62
47 48 2.098831 GCCAACGCTAGTCGGAACC 61.099 63.158 10.53 0.00 43.86 3.62
48 49 1.804326 CCAACGCTAGTCGGAACCG 60.804 63.158 6.94 6.94 43.86 4.44
49 50 2.126189 AACGCTAGTCGGAACCGC 60.126 61.111 8.48 4.19 43.86 5.68
50 51 3.637926 AACGCTAGTCGGAACCGCC 62.638 63.158 8.48 0.00 43.86 6.13
51 52 4.124351 CGCTAGTCGGAACCGCCA 62.124 66.667 8.48 0.00 39.59 5.69
52 53 2.499685 GCTAGTCGGAACCGCCAT 59.500 61.111 8.48 0.00 39.59 4.40
53 54 1.883084 GCTAGTCGGAACCGCCATG 60.883 63.158 8.48 0.00 39.59 3.66
54 55 1.515954 CTAGTCGGAACCGCCATGT 59.484 57.895 8.48 0.00 39.59 3.21
55 56 0.527817 CTAGTCGGAACCGCCATGTC 60.528 60.000 8.48 0.00 39.59 3.06
56 57 2.274232 TAGTCGGAACCGCCATGTCG 62.274 60.000 8.48 0.00 39.59 4.35
64 65 2.202932 CGCCATGTCGGAAGGAGG 60.203 66.667 0.00 0.00 36.56 4.30
65 66 2.990479 GCCATGTCGGAAGGAGGT 59.010 61.111 0.00 0.00 36.56 3.85
66 67 1.299976 GCCATGTCGGAAGGAGGTT 59.700 57.895 0.00 0.00 36.56 3.50
67 68 1.026718 GCCATGTCGGAAGGAGGTTG 61.027 60.000 0.00 0.00 36.56 3.77
68 69 0.392998 CCATGTCGGAAGGAGGTTGG 60.393 60.000 0.00 0.00 36.56 3.77
69 70 0.324943 CATGTCGGAAGGAGGTTGGT 59.675 55.000 0.00 0.00 0.00 3.67
70 71 0.324943 ATGTCGGAAGGAGGTTGGTG 59.675 55.000 0.00 0.00 0.00 4.17
71 72 1.052124 TGTCGGAAGGAGGTTGGTGT 61.052 55.000 0.00 0.00 0.00 4.16
72 73 0.602905 GTCGGAAGGAGGTTGGTGTG 60.603 60.000 0.00 0.00 0.00 3.82
73 74 1.302511 CGGAAGGAGGTTGGTGTGG 60.303 63.158 0.00 0.00 0.00 4.17
74 75 1.603739 GGAAGGAGGTTGGTGTGGC 60.604 63.158 0.00 0.00 0.00 5.01
75 76 1.966451 GAAGGAGGTTGGTGTGGCG 60.966 63.158 0.00 0.00 0.00 5.69
76 77 2.391724 GAAGGAGGTTGGTGTGGCGA 62.392 60.000 0.00 0.00 0.00 5.54
77 78 1.779061 AAGGAGGTTGGTGTGGCGAT 61.779 55.000 0.00 0.00 0.00 4.58
78 79 2.040544 GGAGGTTGGTGTGGCGATG 61.041 63.158 0.00 0.00 0.00 3.84
79 80 2.034066 AGGTTGGTGTGGCGATGG 59.966 61.111 0.00 0.00 0.00 3.51
80 81 3.747976 GGTTGGTGTGGCGATGGC 61.748 66.667 0.00 0.00 38.90 4.40
81 82 2.983030 GTTGGTGTGGCGATGGCA 60.983 61.111 1.01 0.00 42.47 4.92
88 89 4.408821 TGGCGATGGCACCACCTC 62.409 66.667 1.01 0.00 42.47 3.85
91 92 4.838152 CGATGGCACCACCTCCGG 62.838 72.222 0.00 0.00 40.22 5.14
92 93 4.489771 GATGGCACCACCTCCGGG 62.490 72.222 0.00 0.00 40.22 5.73
97 98 4.016706 CACCACCTCCGGGTCCAC 62.017 72.222 0.00 0.00 45.41 4.02
100 101 3.760035 CACCTCCGGGTCCACGAG 61.760 72.222 0.00 0.12 45.41 4.18
103 104 3.461773 CTCCGGGTCCACGAGCAT 61.462 66.667 0.00 0.00 35.47 3.79
104 105 3.000819 TCCGGGTCCACGAGCATT 61.001 61.111 0.00 0.00 35.47 3.56
105 106 2.819595 CCGGGTCCACGAGCATTG 60.820 66.667 0.00 0.00 35.47 2.82
106 107 2.819595 CGGGTCCACGAGCATTGG 60.820 66.667 0.00 0.00 35.47 3.16
107 108 2.668632 GGGTCCACGAGCATTGGA 59.331 61.111 0.00 0.00 41.06 3.53
108 109 1.224592 GGGTCCACGAGCATTGGAT 59.775 57.895 4.45 0.00 45.05 3.41
109 110 0.815615 GGGTCCACGAGCATTGGATC 60.816 60.000 4.45 3.95 45.05 3.36
110 111 0.179000 GGTCCACGAGCATTGGATCT 59.821 55.000 4.45 0.00 45.05 2.75
111 112 1.293924 GTCCACGAGCATTGGATCTG 58.706 55.000 4.45 0.00 45.05 2.90
112 113 0.178767 TCCACGAGCATTGGATCTGG 59.821 55.000 0.00 0.00 38.28 3.86
113 114 1.442526 CCACGAGCATTGGATCTGGC 61.443 60.000 0.00 0.00 36.02 4.85
114 115 0.745486 CACGAGCATTGGATCTGGCA 60.745 55.000 0.00 0.00 0.00 4.92
115 116 0.035152 ACGAGCATTGGATCTGGCAA 60.035 50.000 0.00 0.00 0.00 4.52
116 117 1.097232 CGAGCATTGGATCTGGCAAA 58.903 50.000 0.00 0.00 0.00 3.68
117 118 1.473677 CGAGCATTGGATCTGGCAAAA 59.526 47.619 0.00 0.00 0.00 2.44
118 119 2.479049 CGAGCATTGGATCTGGCAAAAG 60.479 50.000 0.00 0.00 0.00 2.27
119 120 1.206371 AGCATTGGATCTGGCAAAAGC 59.794 47.619 0.00 0.00 0.00 3.51
120 121 1.066716 GCATTGGATCTGGCAAAAGCA 60.067 47.619 0.00 0.00 0.00 3.91
121 122 2.888594 CATTGGATCTGGCAAAAGCAG 58.111 47.619 0.00 0.00 0.00 4.24
122 123 2.291209 TTGGATCTGGCAAAAGCAGA 57.709 45.000 0.00 0.00 0.00 4.26
123 124 1.830279 TGGATCTGGCAAAAGCAGAG 58.170 50.000 0.00 0.00 0.00 3.35
124 125 1.101331 GGATCTGGCAAAAGCAGAGG 58.899 55.000 0.00 0.00 0.00 3.69
125 126 0.455005 GATCTGGCAAAAGCAGAGGC 59.545 55.000 0.00 0.00 41.61 4.70
136 137 3.467776 GCAGAGGCTTTGAGGTAGG 57.532 57.895 9.54 0.00 36.96 3.18
137 138 0.107459 GCAGAGGCTTTGAGGTAGGG 60.107 60.000 9.54 0.00 36.96 3.53
138 139 0.107459 CAGAGGCTTTGAGGTAGGGC 60.107 60.000 0.00 0.00 0.00 5.19
139 140 1.224870 GAGGCTTTGAGGTAGGGCC 59.775 63.158 0.00 0.00 42.74 5.80
140 141 2.124695 GGCTTTGAGGTAGGGCCG 60.125 66.667 0.00 0.00 43.70 6.13
141 142 2.669240 GCTTTGAGGTAGGGCCGT 59.331 61.111 2.24 2.24 43.70 5.68
142 143 1.449778 GCTTTGAGGTAGGGCCGTC 60.450 63.158 0.00 0.00 43.70 4.79
143 144 1.153628 CTTTGAGGTAGGGCCGTCG 60.154 63.158 0.00 0.00 43.70 5.12
144 145 2.573609 CTTTGAGGTAGGGCCGTCGG 62.574 65.000 6.99 6.99 43.70 4.79
178 179 3.587933 GCGAGGAGAGGCGACGAT 61.588 66.667 0.00 0.00 0.00 3.73
179 180 2.329690 CGAGGAGAGGCGACGATG 59.670 66.667 0.00 0.00 0.00 3.84
180 181 2.180862 CGAGGAGAGGCGACGATGA 61.181 63.158 0.00 0.00 0.00 2.92
181 182 1.357334 GAGGAGAGGCGACGATGAC 59.643 63.158 0.00 0.00 0.00 3.06
182 183 2.065906 GAGGAGAGGCGACGATGACC 62.066 65.000 0.00 0.00 0.00 4.02
183 184 2.024871 GAGAGGCGACGATGACCG 59.975 66.667 0.00 0.00 45.44 4.79
184 185 3.471244 GAGAGGCGACGATGACCGG 62.471 68.421 0.00 0.00 43.93 5.28
191 192 2.031919 ACGATGACCGGCAAGCAA 59.968 55.556 0.00 0.00 43.93 3.91
192 193 2.034879 ACGATGACCGGCAAGCAAG 61.035 57.895 0.00 0.00 43.93 4.01
193 194 2.753966 CGATGACCGGCAAGCAAGG 61.754 63.158 0.00 4.59 33.91 3.61
194 195 1.377202 GATGACCGGCAAGCAAGGA 60.377 57.895 0.00 0.00 0.00 3.36
195 196 1.648467 GATGACCGGCAAGCAAGGAC 61.648 60.000 0.00 6.97 0.00 3.85
196 197 2.032681 GACCGGCAAGCAAGGACT 59.967 61.111 0.00 0.00 0.00 3.85
197 198 2.281761 ACCGGCAAGCAAGGACTG 60.282 61.111 0.00 0.00 0.00 3.51
198 199 3.058160 CCGGCAAGCAAGGACTGG 61.058 66.667 0.00 0.00 0.00 4.00
199 200 2.032528 CGGCAAGCAAGGACTGGA 59.967 61.111 0.00 0.00 0.00 3.86
200 201 2.037136 CGGCAAGCAAGGACTGGAG 61.037 63.158 0.00 0.00 0.00 3.86
201 202 1.676967 GGCAAGCAAGGACTGGAGG 60.677 63.158 0.00 0.00 0.00 4.30
202 203 1.676967 GCAAGCAAGGACTGGAGGG 60.677 63.158 0.00 0.00 0.00 4.30
203 204 1.001641 CAAGCAAGGACTGGAGGGG 60.002 63.158 0.00 0.00 0.00 4.79
204 205 2.911926 AAGCAAGGACTGGAGGGGC 61.912 63.158 0.00 0.00 0.00 5.80
205 206 4.785453 GCAAGGACTGGAGGGGCG 62.785 72.222 0.00 0.00 0.00 6.13
206 207 4.785453 CAAGGACTGGAGGGGCGC 62.785 72.222 0.00 0.00 0.00 6.53
210 211 3.474570 GACTGGAGGGGCGCAGAT 61.475 66.667 10.83 0.00 0.00 2.90
211 212 3.453070 GACTGGAGGGGCGCAGATC 62.453 68.421 10.83 2.67 0.00 2.75
212 213 4.247380 CTGGAGGGGCGCAGATCC 62.247 72.222 10.83 13.43 0.00 3.36
215 216 3.849951 GAGGGGCGCAGATCCGAA 61.850 66.667 10.83 0.00 0.00 4.30
216 217 3.164269 AGGGGCGCAGATCCGAAT 61.164 61.111 10.83 0.00 0.00 3.34
217 218 2.203209 GGGGCGCAGATCCGAATT 60.203 61.111 10.83 0.00 0.00 2.17
218 219 2.546494 GGGGCGCAGATCCGAATTG 61.546 63.158 10.83 0.00 0.00 2.32
219 220 2.329339 GGCGCAGATCCGAATTGC 59.671 61.111 10.83 0.00 34.58 3.56
220 221 2.329339 GCGCAGATCCGAATTGCC 59.671 61.111 0.30 0.00 34.42 4.52
221 222 2.628106 CGCAGATCCGAATTGCCG 59.372 61.111 0.00 0.00 34.42 5.69
222 223 2.173669 CGCAGATCCGAATTGCCGT 61.174 57.895 0.00 0.00 34.42 5.68
223 224 1.353103 GCAGATCCGAATTGCCGTG 59.647 57.895 0.00 0.00 31.79 4.94
224 225 2.016961 CAGATCCGAATTGCCGTGG 58.983 57.895 0.00 0.00 0.00 4.94
225 226 1.153168 AGATCCGAATTGCCGTGGG 60.153 57.895 0.00 0.00 0.00 4.61
243 244 2.025727 CGTAGCCGTCGGGACATC 59.974 66.667 14.38 0.00 34.06 3.06
244 245 2.767445 CGTAGCCGTCGGGACATCA 61.767 63.158 14.38 0.00 34.06 3.07
245 246 1.514087 GTAGCCGTCGGGACATCAA 59.486 57.895 14.38 0.00 34.06 2.57
246 247 0.804933 GTAGCCGTCGGGACATCAAC 60.805 60.000 14.38 0.00 34.06 3.18
247 248 2.274232 TAGCCGTCGGGACATCAACG 62.274 60.000 14.38 0.00 34.06 4.10
248 249 2.569657 CCGTCGGGACATCAACGA 59.430 61.111 2.34 0.00 37.31 3.85
249 250 1.080366 CCGTCGGGACATCAACGAA 60.080 57.895 2.34 0.00 38.46 3.85
250 251 1.349259 CCGTCGGGACATCAACGAAC 61.349 60.000 2.34 0.00 38.46 3.95
251 252 1.349259 CGTCGGGACATCAACGAACC 61.349 60.000 0.00 0.00 38.46 3.62
252 253 0.320073 GTCGGGACATCAACGAACCA 60.320 55.000 0.00 0.00 38.46 3.67
253 254 0.037697 TCGGGACATCAACGAACCAG 60.038 55.000 0.00 0.00 33.21 4.00
254 255 0.037697 CGGGACATCAACGAACCAGA 60.038 55.000 0.00 0.00 0.00 3.86
255 256 1.439679 GGGACATCAACGAACCAGAC 58.560 55.000 0.00 0.00 0.00 3.51
256 257 1.270625 GGGACATCAACGAACCAGACA 60.271 52.381 0.00 0.00 0.00 3.41
257 258 2.489971 GGACATCAACGAACCAGACAA 58.510 47.619 0.00 0.00 0.00 3.18
258 259 2.875933 GGACATCAACGAACCAGACAAA 59.124 45.455 0.00 0.00 0.00 2.83
259 260 3.303791 GGACATCAACGAACCAGACAAAC 60.304 47.826 0.00 0.00 0.00 2.93
260 261 3.541632 ACATCAACGAACCAGACAAACT 58.458 40.909 0.00 0.00 0.00 2.66
261 262 3.312421 ACATCAACGAACCAGACAAACTG 59.688 43.478 0.00 0.00 45.36 3.16
269 270 1.576421 CAGACAAACTGGAAGGCGC 59.424 57.895 0.00 0.00 42.39 6.53
270 271 1.148273 AGACAAACTGGAAGGCGCA 59.852 52.632 10.83 0.00 39.30 6.09
271 272 0.250901 AGACAAACTGGAAGGCGCAT 60.251 50.000 10.83 0.00 39.30 4.73
272 273 0.169009 GACAAACTGGAAGGCGCATC 59.831 55.000 10.83 6.84 39.30 3.91
273 274 0.250901 ACAAACTGGAAGGCGCATCT 60.251 50.000 10.83 0.00 39.30 2.90
274 275 0.449388 CAAACTGGAAGGCGCATCTC 59.551 55.000 10.83 2.47 39.30 2.75
275 276 0.678048 AAACTGGAAGGCGCATCTCC 60.678 55.000 10.83 12.78 39.30 3.71
276 277 1.557269 AACTGGAAGGCGCATCTCCT 61.557 55.000 10.83 0.00 39.30 3.69
277 278 0.687757 ACTGGAAGGCGCATCTCCTA 60.688 55.000 10.83 3.06 39.30 2.94
278 279 0.033228 CTGGAAGGCGCATCTCCTAG 59.967 60.000 10.83 8.59 32.65 3.02
279 280 0.687757 TGGAAGGCGCATCTCCTAGT 60.688 55.000 10.83 0.00 32.65 2.57
280 281 0.032815 GGAAGGCGCATCTCCTAGTC 59.967 60.000 10.83 0.00 32.65 2.59
281 282 0.318275 GAAGGCGCATCTCCTAGTCG 60.318 60.000 10.83 0.00 32.65 4.18
282 283 2.355244 GGCGCATCTCCTAGTCGC 60.355 66.667 10.83 0.00 44.39 5.19
283 284 2.355244 GCGCATCTCCTAGTCGCC 60.355 66.667 0.30 0.00 39.91 5.54
284 285 2.050895 CGCATCTCCTAGTCGCCG 60.051 66.667 0.00 0.00 0.00 6.46
285 286 2.543802 CGCATCTCCTAGTCGCCGA 61.544 63.158 0.00 0.00 0.00 5.54
286 287 1.284408 GCATCTCCTAGTCGCCGAG 59.716 63.158 0.00 0.00 0.00 4.63
287 288 1.953017 CATCTCCTAGTCGCCGAGG 59.047 63.158 0.00 0.00 34.96 4.63
288 289 1.899534 ATCTCCTAGTCGCCGAGGC 60.900 63.158 3.59 3.59 33.75 4.70
289 290 3.597728 CTCCTAGTCGCCGAGGCC 61.598 72.222 8.72 0.00 37.98 5.19
292 293 3.288290 CTAGTCGCCGAGGCCGAT 61.288 66.667 8.72 0.00 38.22 4.18
293 294 3.544167 CTAGTCGCCGAGGCCGATG 62.544 68.421 8.72 0.00 38.22 3.84
312 313 3.785859 TGCCCGACAGAGGATGCC 61.786 66.667 0.00 0.00 0.00 4.40
313 314 4.899239 GCCCGACAGAGGATGCCG 62.899 72.222 0.00 0.00 0.00 5.69
314 315 4.227134 CCCGACAGAGGATGCCGG 62.227 72.222 0.00 0.00 39.85 6.13
315 316 4.899239 CCGACAGAGGATGCCGGC 62.899 72.222 22.73 22.73 33.47 6.13
316 317 4.147449 CGACAGAGGATGCCGGCA 62.147 66.667 34.80 34.80 0.00 5.69
317 318 2.202987 GACAGAGGATGCCGGCAG 60.203 66.667 35.36 21.92 0.00 4.85
318 319 4.479993 ACAGAGGATGCCGGCAGC 62.480 66.667 35.96 35.96 44.14 5.25
328 329 4.154347 CCGGCAGCCCAGAGAGAC 62.154 72.222 5.63 0.00 0.00 3.36
329 330 4.154347 CGGCAGCCCAGAGAGACC 62.154 72.222 5.63 0.00 0.00 3.85
330 331 4.154347 GGCAGCCCAGAGAGACCG 62.154 72.222 0.00 0.00 0.00 4.79
331 332 4.154347 GCAGCCCAGAGAGACCGG 62.154 72.222 0.00 0.00 0.00 5.28
332 333 2.363018 CAGCCCAGAGAGACCGGA 60.363 66.667 9.46 0.00 0.00 5.14
333 334 2.043450 AGCCCAGAGAGACCGGAG 60.043 66.667 9.46 0.00 0.00 4.63
334 335 2.043852 GCCCAGAGAGACCGGAGA 60.044 66.667 9.46 0.00 0.00 3.71
335 336 1.682684 GCCCAGAGAGACCGGAGAA 60.683 63.158 9.46 0.00 0.00 2.87
336 337 1.950973 GCCCAGAGAGACCGGAGAAC 61.951 65.000 9.46 0.00 0.00 3.01
337 338 1.658686 CCCAGAGAGACCGGAGAACG 61.659 65.000 9.46 0.00 43.80 3.95
338 339 1.137825 CAGAGAGACCGGAGAACGC 59.862 63.158 9.46 0.00 42.52 4.84
339 340 2.100603 GAGAGACCGGAGAACGCG 59.899 66.667 9.46 3.53 42.52 6.01
340 341 3.398353 GAGAGACCGGAGAACGCGG 62.398 68.421 9.46 0.00 42.52 6.46
341 342 4.493747 GAGACCGGAGAACGCGGG 62.494 72.222 9.46 2.56 42.52 6.13
343 344 4.368543 GACCGGAGAACGCGGGTT 62.369 66.667 18.66 18.66 41.00 4.11
371 372 3.431725 GTGGCGCCAGCAACTACC 61.432 66.667 33.73 12.14 43.89 3.18
374 375 4.715523 GCGCCAGCAACTACCCCA 62.716 66.667 0.00 0.00 44.35 4.96
375 376 2.272146 CGCCAGCAACTACCCCAT 59.728 61.111 0.00 0.00 0.00 4.00
376 377 1.819632 CGCCAGCAACTACCCCATC 60.820 63.158 0.00 0.00 0.00 3.51
377 378 1.819632 GCCAGCAACTACCCCATCG 60.820 63.158 0.00 0.00 0.00 3.84
378 379 1.819632 CCAGCAACTACCCCATCGC 60.820 63.158 0.00 0.00 0.00 4.58
379 380 2.173669 CAGCAACTACCCCATCGCG 61.174 63.158 0.00 0.00 0.00 5.87
380 381 2.185867 GCAACTACCCCATCGCGA 59.814 61.111 13.09 13.09 0.00 5.87
381 382 1.448893 GCAACTACCCCATCGCGAA 60.449 57.895 15.24 0.00 0.00 4.70
382 383 1.429148 GCAACTACCCCATCGCGAAG 61.429 60.000 15.24 9.17 0.00 3.79
383 384 0.174845 CAACTACCCCATCGCGAAGA 59.825 55.000 15.24 0.00 0.00 2.87
384 385 0.175073 AACTACCCCATCGCGAAGAC 59.825 55.000 15.24 0.00 0.00 3.01
385 386 1.299165 CTACCCCATCGCGAAGACG 60.299 63.158 15.24 4.35 42.93 4.18
404 405 4.974721 CCCACCTGCCACCACCAC 62.975 72.222 0.00 0.00 0.00 4.16
405 406 3.889692 CCACCTGCCACCACCACT 61.890 66.667 0.00 0.00 0.00 4.00
406 407 2.525124 CCACCTGCCACCACCACTA 61.525 63.158 0.00 0.00 0.00 2.74
407 408 1.685224 CACCTGCCACCACCACTAT 59.315 57.895 0.00 0.00 0.00 2.12
408 409 0.677731 CACCTGCCACCACCACTATG 60.678 60.000 0.00 0.00 0.00 2.23
409 410 1.077501 CCTGCCACCACCACTATGG 60.078 63.158 0.00 0.00 46.10 2.74
410 411 1.077501 CTGCCACCACCACTATGGG 60.078 63.158 0.00 0.00 44.81 4.00
411 412 2.275418 GCCACCACCACTATGGGG 59.725 66.667 0.00 0.00 44.81 4.96
446 447 4.489771 GACCGTGGGGCCAGGATG 62.490 72.222 17.11 0.79 36.48 3.51
448 449 3.087253 CCGTGGGGCCAGGATGTA 61.087 66.667 4.39 0.00 34.13 2.29
449 450 2.675242 CCGTGGGGCCAGGATGTAA 61.675 63.158 4.39 0.00 34.13 2.41
450 451 1.451387 CGTGGGGCCAGGATGTAAC 60.451 63.158 4.39 0.00 34.13 2.50
451 452 1.451387 GTGGGGCCAGGATGTAACG 60.451 63.158 4.39 0.00 0.00 3.18
452 453 1.613928 TGGGGCCAGGATGTAACGA 60.614 57.895 4.39 0.00 0.00 3.85
453 454 1.202099 TGGGGCCAGGATGTAACGAA 61.202 55.000 4.39 0.00 0.00 3.85
454 455 0.182775 GGGGCCAGGATGTAACGAAT 59.817 55.000 4.39 0.00 0.00 3.34
455 456 1.594331 GGGCCAGGATGTAACGAATC 58.406 55.000 4.39 0.00 0.00 2.52
456 457 1.594331 GGCCAGGATGTAACGAATCC 58.406 55.000 0.00 0.00 43.47 3.01
457 458 1.134220 GGCCAGGATGTAACGAATCCA 60.134 52.381 0.00 0.00 45.24 3.41
458 459 1.940613 GCCAGGATGTAACGAATCCAC 59.059 52.381 5.32 0.00 45.24 4.02
459 460 2.561569 CCAGGATGTAACGAATCCACC 58.438 52.381 5.32 0.00 45.24 4.61
460 461 2.561569 CAGGATGTAACGAATCCACCC 58.438 52.381 5.32 0.00 45.24 4.61
461 462 1.489230 AGGATGTAACGAATCCACCCC 59.511 52.381 5.32 0.00 45.24 4.95
462 463 1.578583 GATGTAACGAATCCACCCCG 58.421 55.000 0.00 0.00 0.00 5.73
463 464 0.463116 ATGTAACGAATCCACCCCGC 60.463 55.000 0.00 0.00 0.00 6.13
464 465 1.816679 GTAACGAATCCACCCCGCC 60.817 63.158 0.00 0.00 0.00 6.13
465 466 2.291801 TAACGAATCCACCCCGCCA 61.292 57.895 0.00 0.00 0.00 5.69
466 467 2.524951 TAACGAATCCACCCCGCCAC 62.525 60.000 0.00 0.00 0.00 5.01
468 469 4.041762 GAATCCACCCCGCCACCA 62.042 66.667 0.00 0.00 0.00 4.17
469 470 4.360405 AATCCACCCCGCCACCAC 62.360 66.667 0.00 0.00 0.00 4.16
533 534 4.660938 GCGGGTGGAGGTGGCTTT 62.661 66.667 0.00 0.00 0.00 3.51
534 535 2.359975 CGGGTGGAGGTGGCTTTC 60.360 66.667 0.00 0.00 0.00 2.62
535 536 2.035783 GGGTGGAGGTGGCTTTCC 59.964 66.667 0.00 0.00 0.00 3.13
536 537 2.035783 GGTGGAGGTGGCTTTCCC 59.964 66.667 0.00 0.00 32.29 3.97
537 538 2.359975 GTGGAGGTGGCTTTCCCG 60.360 66.667 0.00 0.00 35.87 5.14
538 539 3.646715 TGGAGGTGGCTTTCCCGG 61.647 66.667 0.00 0.00 35.87 5.73
600 601 3.828023 GGTGGGTGGGTGTGGGTT 61.828 66.667 0.00 0.00 0.00 4.11
601 602 2.280753 GTGGGTGGGTGTGGGTTT 59.719 61.111 0.00 0.00 0.00 3.27
602 603 1.382009 GTGGGTGGGTGTGGGTTTT 60.382 57.895 0.00 0.00 0.00 2.43
603 604 1.075896 TGGGTGGGTGTGGGTTTTC 60.076 57.895 0.00 0.00 0.00 2.29
604 605 2.197605 GGGTGGGTGTGGGTTTTCG 61.198 63.158 0.00 0.00 0.00 3.46
605 606 2.725641 GTGGGTGTGGGTTTTCGC 59.274 61.111 0.00 0.00 0.00 4.70
606 607 2.122167 GTGGGTGTGGGTTTTCGCA 61.122 57.895 0.00 0.00 40.42 5.10
607 608 1.379977 TGGGTGTGGGTTTTCGCAA 60.380 52.632 0.00 0.00 44.08 4.85
608 609 0.970937 TGGGTGTGGGTTTTCGCAAA 60.971 50.000 0.00 0.00 44.08 3.68
609 610 0.175989 GGGTGTGGGTTTTCGCAAAA 59.824 50.000 0.00 0.00 44.08 2.44
610 611 1.405661 GGGTGTGGGTTTTCGCAAAAA 60.406 47.619 0.00 0.00 44.08 1.94
685 690 2.812011 TCTAAAGGAAAACTCAAGCCGC 59.188 45.455 0.00 0.00 0.00 6.53
752 757 3.479203 CCCCCGCCATGAGCAGTA 61.479 66.667 0.00 0.00 44.04 2.74
753 758 2.203070 CCCCGCCATGAGCAGTAC 60.203 66.667 0.00 0.00 44.04 2.73
754 759 2.735772 CCCCGCCATGAGCAGTACT 61.736 63.158 0.00 0.00 44.04 2.73
755 760 1.227380 CCCGCCATGAGCAGTACTC 60.227 63.158 0.00 0.00 46.45 2.59
800 805 8.780846 ACAATACCACATCGTTTAATTAGTCA 57.219 30.769 0.00 0.00 0.00 3.41
818 823 3.128938 AGTCAGACTCGGTTTCCTAATCG 59.871 47.826 0.00 0.00 39.23 3.34
819 824 2.159282 TCAGACTCGGTTTCCTAATCGC 60.159 50.000 0.00 0.00 37.78 4.58
877 882 4.586306 TTAATCCAACTCCTTTCCTCCC 57.414 45.455 0.00 0.00 0.00 4.30
913 918 1.661112 CCTTCCTTCTTCGTTGCGATC 59.339 52.381 0.00 0.00 35.23 3.69
956 961 1.262950 TGCCAACGAACGAACAGATTG 59.737 47.619 0.14 0.00 0.00 2.67
976 981 2.046988 TCCACCGCTCTCGACGTA 60.047 61.111 0.00 0.00 38.10 3.57
977 982 2.104859 TCCACCGCTCTCGACGTAG 61.105 63.158 0.00 0.00 38.10 3.51
1062 1067 2.039624 ACGATGCTGTCCCTCCCT 59.960 61.111 0.00 0.00 0.00 4.20
1164 1169 1.828660 CCGCCTCGTCCAGACCTAT 60.829 63.158 0.00 0.00 0.00 2.57
1406 1411 4.821589 GGAAGAGGACAGGCGCGG 62.822 72.222 8.83 0.00 0.00 6.46
1489 1494 2.239439 TCGGAGGGAGGAGACCACT 61.239 63.158 0.00 0.00 0.00 4.00
1655 1660 0.966370 GTGAGCCTGGACTACGACCT 60.966 60.000 0.00 0.00 0.00 3.85
1662 1667 2.494918 GACTACGACCTGGCGCAT 59.505 61.111 10.83 0.00 33.86 4.73
1935 1940 3.003763 AAGGAGGTGGAGGCCGAC 61.004 66.667 0.00 0.00 0.00 4.79
2070 2075 1.972660 AAAAGATCCTCGAGCGGGGG 61.973 60.000 6.99 2.95 36.14 5.40
2136 2144 5.369833 ACGAGCTAGCTTAGATTGAGTAGA 58.630 41.667 20.42 0.00 30.26 2.59
2164 2177 7.386025 TCATGTTGTGTTTGTTGATGTTTTTGA 59.614 29.630 0.00 0.00 0.00 2.69
2247 2261 2.230940 CGTTCGATGCTGGCTACCG 61.231 63.158 0.00 0.00 0.00 4.02
2248 2262 2.202878 TTCGATGCTGGCTACCGC 60.203 61.111 0.00 0.00 0.00 5.68
2268 2282 0.391263 GTGAGGCTCCGTTCCGAAAT 60.391 55.000 12.86 0.00 0.00 2.17
2280 2294 4.797349 CCGTTCCGAAATCAGTAGTTAGAC 59.203 45.833 0.00 0.00 0.00 2.59
2292 2306 6.358178 TCAGTAGTTAGACGAGATCTTCCAT 58.642 40.000 0.00 0.00 39.04 3.41
2358 2375 0.611062 TGGTGAGGAGTCGTCGGATT 60.611 55.000 8.24 0.00 0.00 3.01
2364 2381 1.154093 GAGTCGTCGGATTCACGCA 60.154 57.895 0.00 0.00 37.18 5.24
2371 2388 0.739462 TCGGATTCACGCATGTGGAC 60.739 55.000 11.65 0.00 46.42 4.02
2374 2391 0.729116 GATTCACGCATGTGGACTGG 59.271 55.000 11.65 0.00 46.42 4.00
2378 2395 1.070914 TCACGCATGTGGACTGGTTTA 59.929 47.619 11.65 0.00 46.42 2.01
2379 2396 1.196808 CACGCATGTGGACTGGTTTAC 59.803 52.381 11.65 0.00 42.59 2.01
2382 2399 2.159627 CGCATGTGGACTGGTTTACTTC 59.840 50.000 0.00 0.00 0.00 3.01
2386 2405 5.762045 CATGTGGACTGGTTTACTTCTTTG 58.238 41.667 0.00 0.00 0.00 2.77
2387 2406 4.850680 TGTGGACTGGTTTACTTCTTTGT 58.149 39.130 0.00 0.00 0.00 2.83
2388 2407 5.991861 TGTGGACTGGTTTACTTCTTTGTA 58.008 37.500 0.00 0.00 0.00 2.41
2389 2408 6.053005 TGTGGACTGGTTTACTTCTTTGTAG 58.947 40.000 0.00 0.00 0.00 2.74
2394 2413 8.771766 GGACTGGTTTACTTCTTTGTAGTTTAG 58.228 37.037 0.00 0.00 0.00 1.85
2395 2414 9.538508 GACTGGTTTACTTCTTTGTAGTTTAGA 57.461 33.333 0.00 0.00 0.00 2.10
2440 2459 9.976511 CTATATTTTTAGGTTGTCCATCGTCTA 57.023 33.333 0.00 0.00 35.89 2.59
2478 2498 6.923508 ACGATGATGACGCTGAATAAAGATTA 59.076 34.615 0.00 0.00 0.00 1.75
2524 2546 2.123428 GTCATGTGGCTGGGGATGC 61.123 63.158 0.00 0.00 0.00 3.91
2560 2585 6.992123 CAGTATGTTCAAGTAAGGATGGCATA 59.008 38.462 0.00 0.00 0.00 3.14
2565 2590 0.035458 AGTAAGGATGGCATAGCGGC 59.965 55.000 0.00 0.00 41.67 6.53
2655 2680 1.188863 GCGGAGTTTGGGAGGTAGTA 58.811 55.000 0.00 0.00 0.00 1.82
2656 2681 1.761198 GCGGAGTTTGGGAGGTAGTAT 59.239 52.381 0.00 0.00 0.00 2.12
2672 2697 4.082463 GGTAGTATAGGAGCAGATGCAGAC 60.082 50.000 7.68 0.00 45.16 3.51
2715 2747 1.191647 CGAAACGTGTGCTAGGTTCAC 59.808 52.381 0.00 0.00 36.44 3.18
2718 2750 1.287815 CGTGTGCTAGGTTCACGGA 59.712 57.895 8.69 0.00 46.99 4.69
2742 2774 4.394610 TCGTGGATGACATGTATGGTTTTG 59.605 41.667 0.00 0.00 37.38 2.44
2769 2801 0.034337 GCGTCTTAGTTGTGGTGGGA 59.966 55.000 0.00 0.00 0.00 4.37
2773 2805 1.702401 TCTTAGTTGTGGTGGGATGCA 59.298 47.619 0.00 0.00 0.00 3.96
2790 2822 3.170791 TGCAAGATCTGGAGTTCGATC 57.829 47.619 0.00 0.00 37.02 3.69
2795 2827 2.356382 AGATCTGGAGTTCGATCACGTC 59.644 50.000 0.00 0.00 38.75 4.34
2923 2955 0.976073 TCGGGTGAGGAGGTGATTCC 60.976 60.000 0.00 0.00 37.52 3.01
2938 2970 6.546484 AGGTGATTCCTCATTCTTTTCTTCA 58.454 36.000 0.00 0.00 44.42 3.02
2955 2987 2.195567 CAGTGGCTGTTGTGGTGGG 61.196 63.158 0.00 0.00 0.00 4.61
2957 2989 3.099841 TGGCTGTTGTGGTGGGGA 61.100 61.111 0.00 0.00 0.00 4.81
2958 2990 2.440599 GGCTGTTGTGGTGGGGAT 59.559 61.111 0.00 0.00 0.00 3.85
2963 2995 1.073763 CTGTTGTGGTGGGGATGAAGA 59.926 52.381 0.00 0.00 0.00 2.87
2993 3025 2.673368 GGACGTTGGTATCAAGCTCAAG 59.327 50.000 0.00 0.00 32.92 3.02
2999 3031 3.877559 TGGTATCAAGCTCAAGGATGTG 58.122 45.455 0.00 0.00 0.00 3.21
3022 3054 7.434897 TGTGCTGCTATCTTTTTAGTTTTGTTG 59.565 33.333 0.00 0.00 0.00 3.33
3109 3141 4.923264 AAAAATACGAGAGAACCGCTTC 57.077 40.909 0.00 0.00 0.00 3.86
3110 3142 3.587797 AAATACGAGAGAACCGCTTCA 57.412 42.857 0.00 0.00 0.00 3.02
3111 3143 2.563471 ATACGAGAGAACCGCTTCAC 57.437 50.000 0.00 0.00 0.00 3.18
3112 3144 0.524862 TACGAGAGAACCGCTTCACC 59.475 55.000 0.00 0.00 0.00 4.02
3113 3145 1.801913 CGAGAGAACCGCTTCACCG 60.802 63.158 0.00 0.00 0.00 4.94
3114 3146 2.048127 AGAGAACCGCTTCACCGC 60.048 61.111 0.00 0.00 0.00 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 0.732571 CGTCGATTCCACATTTGGGG 59.267 55.000 0.00 0.00 44.11 4.96
2 3 1.732941 TCGTCGATTCCACATTTGGG 58.267 50.000 0.00 0.00 44.11 4.12
8 9 1.405463 CTCCTCATCGTCGATTCCACA 59.595 52.381 4.63 0.00 0.00 4.17
9 10 1.269309 CCTCCTCATCGTCGATTCCAC 60.269 57.143 4.63 0.00 0.00 4.02
10 11 1.032794 CCTCCTCATCGTCGATTCCA 58.967 55.000 4.63 0.00 0.00 3.53
11 12 0.319125 GCCTCCTCATCGTCGATTCC 60.319 60.000 4.63 0.00 0.00 3.01
12 13 0.319125 GGCCTCCTCATCGTCGATTC 60.319 60.000 4.63 0.00 0.00 2.52
13 14 1.043116 TGGCCTCCTCATCGTCGATT 61.043 55.000 4.63 0.00 0.00 3.34
14 15 1.043116 TTGGCCTCCTCATCGTCGAT 61.043 55.000 3.32 0.75 0.00 3.59
15 16 1.680989 TTGGCCTCCTCATCGTCGA 60.681 57.895 3.32 0.00 0.00 4.20
16 17 1.519455 GTTGGCCTCCTCATCGTCG 60.519 63.158 3.32 0.00 0.00 5.12
17 18 1.519455 CGTTGGCCTCCTCATCGTC 60.519 63.158 3.32 0.00 0.00 4.20
18 19 2.579201 CGTTGGCCTCCTCATCGT 59.421 61.111 3.32 0.00 0.00 3.73
19 20 2.016393 TAGCGTTGGCCTCCTCATCG 62.016 60.000 3.32 0.00 41.24 3.84
20 21 0.249657 CTAGCGTTGGCCTCCTCATC 60.250 60.000 3.32 0.00 41.24 2.92
21 22 0.978146 ACTAGCGTTGGCCTCCTCAT 60.978 55.000 3.32 0.00 41.24 2.90
22 23 1.605058 GACTAGCGTTGGCCTCCTCA 61.605 60.000 3.32 0.00 41.24 3.86
23 24 1.142097 GACTAGCGTTGGCCTCCTC 59.858 63.158 3.32 0.00 41.24 3.71
24 25 2.711922 CGACTAGCGTTGGCCTCCT 61.712 63.158 3.32 0.00 41.24 3.69
25 26 2.202756 CGACTAGCGTTGGCCTCC 60.203 66.667 3.32 0.00 41.24 4.30
26 27 2.202756 CCGACTAGCGTTGGCCTC 60.203 66.667 3.32 0.00 37.86 4.70
27 28 2.280552 TTCCGACTAGCGTTGGCCT 61.281 57.895 3.32 0.00 43.37 5.19
28 29 2.098831 GTTCCGACTAGCGTTGGCC 61.099 63.158 0.00 0.00 43.37 5.36
29 30 2.098831 GGTTCCGACTAGCGTTGGC 61.099 63.158 5.97 0.00 43.37 4.52
30 31 1.804326 CGGTTCCGACTAGCGTTGG 60.804 63.158 5.19 0.00 44.80 3.77
31 32 2.442188 GCGGTTCCGACTAGCGTTG 61.442 63.158 15.69 0.00 38.64 4.10
32 33 2.126189 GCGGTTCCGACTAGCGTT 60.126 61.111 15.69 0.00 38.64 4.84
33 34 4.125695 GGCGGTTCCGACTAGCGT 62.126 66.667 15.69 0.00 38.64 5.07
34 35 3.426117 ATGGCGGTTCCGACTAGCG 62.426 63.158 18.07 0.00 38.46 4.26
35 36 1.883084 CATGGCGGTTCCGACTAGC 60.883 63.158 18.07 0.00 38.46 3.42
36 37 0.527817 GACATGGCGGTTCCGACTAG 60.528 60.000 18.07 12.27 38.46 2.57
37 38 1.514087 GACATGGCGGTTCCGACTA 59.486 57.895 18.07 5.28 38.46 2.59
38 39 2.264794 GACATGGCGGTTCCGACT 59.735 61.111 18.07 0.00 38.46 4.18
39 40 3.186047 CGACATGGCGGTTCCGAC 61.186 66.667 14.85 13.13 37.80 4.79
40 41 4.444838 CCGACATGGCGGTTCCGA 62.445 66.667 32.53 0.00 46.07 4.55
47 48 2.202932 CCTCCTTCCGACATGGCG 60.203 66.667 15.88 15.88 37.80 5.69
48 49 1.026718 CAACCTCCTTCCGACATGGC 61.027 60.000 0.00 0.00 37.80 4.40
49 50 0.392998 CCAACCTCCTTCCGACATGG 60.393 60.000 0.00 0.00 40.09 3.66
50 51 0.324943 ACCAACCTCCTTCCGACATG 59.675 55.000 0.00 0.00 0.00 3.21
51 52 0.324943 CACCAACCTCCTTCCGACAT 59.675 55.000 0.00 0.00 0.00 3.06
52 53 1.052124 ACACCAACCTCCTTCCGACA 61.052 55.000 0.00 0.00 0.00 4.35
53 54 0.602905 CACACCAACCTCCTTCCGAC 60.603 60.000 0.00 0.00 0.00 4.79
54 55 1.752198 CACACCAACCTCCTTCCGA 59.248 57.895 0.00 0.00 0.00 4.55
55 56 1.302511 CCACACCAACCTCCTTCCG 60.303 63.158 0.00 0.00 0.00 4.30
56 57 1.603739 GCCACACCAACCTCCTTCC 60.604 63.158 0.00 0.00 0.00 3.46
57 58 1.966451 CGCCACACCAACCTCCTTC 60.966 63.158 0.00 0.00 0.00 3.46
58 59 1.779061 ATCGCCACACCAACCTCCTT 61.779 55.000 0.00 0.00 0.00 3.36
59 60 2.224159 ATCGCCACACCAACCTCCT 61.224 57.895 0.00 0.00 0.00 3.69
60 61 2.040544 CATCGCCACACCAACCTCC 61.041 63.158 0.00 0.00 0.00 4.30
61 62 2.040544 CCATCGCCACACCAACCTC 61.041 63.158 0.00 0.00 0.00 3.85
62 63 2.034066 CCATCGCCACACCAACCT 59.966 61.111 0.00 0.00 0.00 3.50
63 64 3.747976 GCCATCGCCACACCAACC 61.748 66.667 0.00 0.00 0.00 3.77
64 65 2.983030 TGCCATCGCCACACCAAC 60.983 61.111 0.00 0.00 0.00 3.77
65 66 2.983030 GTGCCATCGCCACACCAA 60.983 61.111 0.00 0.00 0.00 3.67
86 87 3.019003 AATGCTCGTGGACCCGGAG 62.019 63.158 0.73 4.85 0.00 4.63
87 88 3.000819 AATGCTCGTGGACCCGGA 61.001 61.111 0.73 0.00 0.00 5.14
88 89 2.819595 CAATGCTCGTGGACCCGG 60.820 66.667 0.00 0.00 0.00 5.73
89 90 2.819595 CCAATGCTCGTGGACCCG 60.820 66.667 0.00 0.00 38.54 5.28
90 91 2.668632 TCCAATGCTCGTGGACCC 59.331 61.111 0.10 0.00 40.33 4.46
94 95 1.442526 GCCAGATCCAATGCTCGTGG 61.443 60.000 0.00 0.00 37.51 4.94
95 96 0.745486 TGCCAGATCCAATGCTCGTG 60.745 55.000 0.00 0.00 0.00 4.35
96 97 0.035152 TTGCCAGATCCAATGCTCGT 60.035 50.000 0.00 0.00 0.00 4.18
97 98 1.097232 TTTGCCAGATCCAATGCTCG 58.903 50.000 0.00 0.00 0.00 5.03
98 99 2.737679 GCTTTTGCCAGATCCAATGCTC 60.738 50.000 0.00 0.00 40.15 4.26
99 100 1.206371 GCTTTTGCCAGATCCAATGCT 59.794 47.619 0.00 0.00 40.15 3.79
100 101 1.066716 TGCTTTTGCCAGATCCAATGC 60.067 47.619 0.00 0.00 46.87 3.56
101 102 2.494471 TCTGCTTTTGCCAGATCCAATG 59.506 45.455 0.00 0.00 46.87 2.82
102 103 2.758979 CTCTGCTTTTGCCAGATCCAAT 59.241 45.455 0.00 0.00 46.87 3.16
103 104 2.165167 CTCTGCTTTTGCCAGATCCAA 58.835 47.619 0.00 0.00 46.87 3.53
104 105 1.615116 CCTCTGCTTTTGCCAGATCCA 60.615 52.381 0.00 0.00 46.87 3.41
105 106 1.101331 CCTCTGCTTTTGCCAGATCC 58.899 55.000 0.00 0.00 46.87 3.36
106 107 0.455005 GCCTCTGCTTTTGCCAGATC 59.545 55.000 0.00 0.00 46.87 2.75
107 108 2.576298 GCCTCTGCTTTTGCCAGAT 58.424 52.632 0.00 0.00 46.87 2.90
108 109 4.085876 GCCTCTGCTTTTGCCAGA 57.914 55.556 0.00 0.00 46.87 3.86
118 119 0.107459 CCCTACCTCAAAGCCTCTGC 60.107 60.000 0.00 0.00 37.95 4.26
119 120 0.107459 GCCCTACCTCAAAGCCTCTG 60.107 60.000 0.00 0.00 0.00 3.35
120 121 1.275421 GGCCCTACCTCAAAGCCTCT 61.275 60.000 0.00 0.00 40.57 3.69
121 122 1.224870 GGCCCTACCTCAAAGCCTC 59.775 63.158 0.00 0.00 40.57 4.70
122 123 2.670148 CGGCCCTACCTCAAAGCCT 61.670 63.158 0.00 0.00 41.60 4.58
123 124 2.124695 CGGCCCTACCTCAAAGCC 60.125 66.667 0.00 0.00 40.33 4.35
124 125 1.449778 GACGGCCCTACCTCAAAGC 60.450 63.158 0.00 0.00 35.61 3.51
125 126 1.153628 CGACGGCCCTACCTCAAAG 60.154 63.158 0.00 0.00 35.61 2.77
126 127 2.652095 CCGACGGCCCTACCTCAAA 61.652 63.158 0.00 0.00 35.61 2.69
127 128 3.072468 CCGACGGCCCTACCTCAA 61.072 66.667 0.00 0.00 35.61 3.02
151 152 3.827898 CTCCTCGCGGTGGTCCTC 61.828 72.222 6.13 0.00 0.00 3.71
152 153 4.361971 TCTCCTCGCGGTGGTCCT 62.362 66.667 6.13 0.00 0.00 3.85
153 154 3.827898 CTCTCCTCGCGGTGGTCC 61.828 72.222 6.13 0.00 0.00 4.46
154 155 3.827898 CCTCTCCTCGCGGTGGTC 61.828 72.222 6.13 0.00 0.00 4.02
161 162 3.587933 ATCGTCGCCTCTCCTCGC 61.588 66.667 0.00 0.00 0.00 5.03
162 163 2.180862 TCATCGTCGCCTCTCCTCG 61.181 63.158 0.00 0.00 0.00 4.63
163 164 1.357334 GTCATCGTCGCCTCTCCTC 59.643 63.158 0.00 0.00 0.00 3.71
164 165 2.122167 GGTCATCGTCGCCTCTCCT 61.122 63.158 0.00 0.00 0.00 3.69
165 166 2.413765 GGTCATCGTCGCCTCTCC 59.586 66.667 0.00 0.00 0.00 3.71
166 167 2.024871 CGGTCATCGTCGCCTCTC 59.975 66.667 0.00 0.00 0.00 3.20
167 168 3.518998 CCGGTCATCGTCGCCTCT 61.519 66.667 0.00 0.00 37.11 3.69
171 172 3.554692 CTTGCCGGTCATCGTCGC 61.555 66.667 1.90 0.00 37.11 5.19
172 173 3.554692 GCTTGCCGGTCATCGTCG 61.555 66.667 1.90 0.00 37.11 5.12
173 174 1.970917 CTTGCTTGCCGGTCATCGTC 61.971 60.000 1.90 0.00 37.11 4.20
174 175 2.031919 TTGCTTGCCGGTCATCGT 59.968 55.556 1.90 0.00 37.11 3.73
175 176 2.753966 CCTTGCTTGCCGGTCATCG 61.754 63.158 1.90 0.00 38.88 3.84
176 177 1.377202 TCCTTGCTTGCCGGTCATC 60.377 57.895 1.90 0.00 0.00 2.92
177 178 1.675641 GTCCTTGCTTGCCGGTCAT 60.676 57.895 1.90 0.00 0.00 3.06
178 179 2.281484 GTCCTTGCTTGCCGGTCA 60.281 61.111 1.90 0.00 0.00 4.02
179 180 2.032681 AGTCCTTGCTTGCCGGTC 59.967 61.111 1.90 0.00 0.00 4.79
180 181 2.281761 CAGTCCTTGCTTGCCGGT 60.282 61.111 1.90 0.00 0.00 5.28
181 182 3.058160 CCAGTCCTTGCTTGCCGG 61.058 66.667 0.00 0.00 0.00 6.13
182 183 2.032528 TCCAGTCCTTGCTTGCCG 59.967 61.111 0.00 0.00 0.00 5.69
183 184 1.676967 CCTCCAGTCCTTGCTTGCC 60.677 63.158 0.00 0.00 0.00 4.52
184 185 1.676967 CCCTCCAGTCCTTGCTTGC 60.677 63.158 0.00 0.00 0.00 4.01
185 186 1.001641 CCCCTCCAGTCCTTGCTTG 60.002 63.158 0.00 0.00 0.00 4.01
186 187 2.911926 GCCCCTCCAGTCCTTGCTT 61.912 63.158 0.00 0.00 0.00 3.91
187 188 3.334054 GCCCCTCCAGTCCTTGCT 61.334 66.667 0.00 0.00 0.00 3.91
188 189 4.785453 CGCCCCTCCAGTCCTTGC 62.785 72.222 0.00 0.00 0.00 4.01
189 190 4.785453 GCGCCCCTCCAGTCCTTG 62.785 72.222 0.00 0.00 0.00 3.61
193 194 3.453070 GATCTGCGCCCCTCCAGTC 62.453 68.421 4.18 0.00 0.00 3.51
194 195 3.474570 GATCTGCGCCCCTCCAGT 61.475 66.667 4.18 0.00 0.00 4.00
195 196 4.247380 GGATCTGCGCCCCTCCAG 62.247 72.222 4.18 0.00 0.00 3.86
198 199 2.666596 AATTCGGATCTGCGCCCCTC 62.667 60.000 4.18 0.00 0.00 4.30
199 200 2.746375 AATTCGGATCTGCGCCCCT 61.746 57.895 4.18 0.00 0.00 4.79
200 201 2.203209 AATTCGGATCTGCGCCCC 60.203 61.111 4.18 0.00 0.00 5.80
201 202 3.025619 CAATTCGGATCTGCGCCC 58.974 61.111 4.18 0.00 0.00 6.13
202 203 2.329339 GCAATTCGGATCTGCGCC 59.671 61.111 4.18 0.00 0.00 6.53
203 204 2.329339 GGCAATTCGGATCTGCGC 59.671 61.111 0.00 0.00 36.93 6.09
204 205 2.173669 ACGGCAATTCGGATCTGCG 61.174 57.895 0.00 0.00 36.93 5.18
205 206 1.353103 CACGGCAATTCGGATCTGC 59.647 57.895 0.00 0.00 35.28 4.26
206 207 1.439353 CCCACGGCAATTCGGATCTG 61.439 60.000 0.00 0.00 0.00 2.90
207 208 1.153168 CCCACGGCAATTCGGATCT 60.153 57.895 0.00 0.00 0.00 2.75
208 209 3.420943 CCCACGGCAATTCGGATC 58.579 61.111 0.00 0.00 0.00 3.36
225 226 4.203076 ATGTCCCGACGGCTACGC 62.203 66.667 8.86 0.00 46.04 4.42
227 228 0.804933 GTTGATGTCCCGACGGCTAC 60.805 60.000 8.86 9.50 0.00 3.58
228 229 1.514087 GTTGATGTCCCGACGGCTA 59.486 57.895 8.86 0.00 0.00 3.93
229 230 2.264794 GTTGATGTCCCGACGGCT 59.735 61.111 8.86 0.00 0.00 5.52
230 231 3.186047 CGTTGATGTCCCGACGGC 61.186 66.667 8.86 0.00 39.56 5.68
231 232 1.080366 TTCGTTGATGTCCCGACGG 60.080 57.895 6.99 6.99 42.53 4.79
232 233 1.349259 GGTTCGTTGATGTCCCGACG 61.349 60.000 0.00 0.00 43.37 5.12
233 234 0.320073 TGGTTCGTTGATGTCCCGAC 60.320 55.000 0.00 0.00 0.00 4.79
234 235 0.037697 CTGGTTCGTTGATGTCCCGA 60.038 55.000 0.00 0.00 0.00 5.14
235 236 0.037697 TCTGGTTCGTTGATGTCCCG 60.038 55.000 0.00 0.00 0.00 5.14
236 237 1.270625 TGTCTGGTTCGTTGATGTCCC 60.271 52.381 0.00 0.00 0.00 4.46
237 238 2.163818 TGTCTGGTTCGTTGATGTCC 57.836 50.000 0.00 0.00 0.00 4.02
238 239 3.560068 AGTTTGTCTGGTTCGTTGATGTC 59.440 43.478 0.00 0.00 0.00 3.06
239 240 3.312421 CAGTTTGTCTGGTTCGTTGATGT 59.688 43.478 0.00 0.00 40.23 3.06
240 241 3.877064 CAGTTTGTCTGGTTCGTTGATG 58.123 45.455 0.00 0.00 40.23 3.07
251 252 1.165907 TGCGCCTTCCAGTTTGTCTG 61.166 55.000 4.18 0.00 43.27 3.51
252 253 0.250901 ATGCGCCTTCCAGTTTGTCT 60.251 50.000 4.18 0.00 0.00 3.41
253 254 0.169009 GATGCGCCTTCCAGTTTGTC 59.831 55.000 4.18 0.00 0.00 3.18
254 255 0.250901 AGATGCGCCTTCCAGTTTGT 60.251 50.000 4.18 0.00 0.00 2.83
255 256 0.449388 GAGATGCGCCTTCCAGTTTG 59.551 55.000 4.18 0.00 0.00 2.93
256 257 0.678048 GGAGATGCGCCTTCCAGTTT 60.678 55.000 4.18 0.00 0.00 2.66
257 258 1.078143 GGAGATGCGCCTTCCAGTT 60.078 57.895 4.18 0.00 0.00 3.16
258 259 0.687757 TAGGAGATGCGCCTTCCAGT 60.688 55.000 19.87 6.76 34.91 4.00
259 260 0.033228 CTAGGAGATGCGCCTTCCAG 59.967 60.000 19.87 12.78 34.91 3.86
260 261 0.687757 ACTAGGAGATGCGCCTTCCA 60.688 55.000 19.87 8.49 34.91 3.53
261 262 0.032815 GACTAGGAGATGCGCCTTCC 59.967 60.000 4.18 9.51 34.91 3.46
262 263 0.318275 CGACTAGGAGATGCGCCTTC 60.318 60.000 4.18 1.35 34.91 3.46
263 264 1.736586 CGACTAGGAGATGCGCCTT 59.263 57.895 4.18 0.00 34.91 4.35
264 265 2.851071 GCGACTAGGAGATGCGCCT 61.851 63.158 4.18 0.00 41.65 5.52
265 266 2.355244 GCGACTAGGAGATGCGCC 60.355 66.667 4.18 0.00 41.65 6.53
266 267 2.355244 GGCGACTAGGAGATGCGC 60.355 66.667 0.00 0.00 46.20 6.09
267 268 2.050895 CGGCGACTAGGAGATGCG 60.051 66.667 0.00 0.00 0.00 4.73
268 269 1.284408 CTCGGCGACTAGGAGATGC 59.716 63.158 4.99 0.00 0.00 3.91
269 270 1.953017 CCTCGGCGACTAGGAGATG 59.047 63.158 4.99 0.00 46.04 2.90
270 271 1.899534 GCCTCGGCGACTAGGAGAT 60.900 63.158 14.21 0.00 46.04 2.75
271 272 2.516460 GCCTCGGCGACTAGGAGA 60.516 66.667 14.21 0.00 46.04 3.71
272 273 3.597728 GGCCTCGGCGACTAGGAG 61.598 72.222 14.21 0.00 46.04 3.69
288 289 4.147449 TCTGTCGGGCAGCATCGG 62.147 66.667 4.34 0.00 44.66 4.18
289 290 2.584418 CTCTGTCGGGCAGCATCG 60.584 66.667 4.34 0.00 44.66 3.84
290 291 2.037620 ATCCTCTGTCGGGCAGCATC 62.038 60.000 4.34 0.00 44.66 3.91
291 292 2.068821 ATCCTCTGTCGGGCAGCAT 61.069 57.895 4.34 0.00 44.66 3.79
292 293 2.685017 ATCCTCTGTCGGGCAGCA 60.685 61.111 4.34 0.00 44.66 4.41
293 294 2.202987 CATCCTCTGTCGGGCAGC 60.203 66.667 4.34 0.00 44.66 5.25
294 295 2.202987 GCATCCTCTGTCGGGCAG 60.203 66.667 2.46 2.46 46.34 4.85
295 296 3.785859 GGCATCCTCTGTCGGGCA 61.786 66.667 0.00 0.00 0.00 5.36
300 301 2.202987 CTGCCGGCATCCTCTGTC 60.203 66.667 32.87 0.00 0.00 3.51
301 302 4.479993 GCTGCCGGCATCCTCTGT 62.480 66.667 32.87 0.00 41.35 3.41
311 312 4.154347 GTCTCTCTGGGCTGCCGG 62.154 72.222 13.40 8.26 0.00 6.13
312 313 4.154347 GGTCTCTCTGGGCTGCCG 62.154 72.222 13.40 0.00 0.00 5.69
313 314 4.154347 CGGTCTCTCTGGGCTGCC 62.154 72.222 11.05 11.05 0.00 4.85
314 315 4.154347 CCGGTCTCTCTGGGCTGC 62.154 72.222 0.00 0.00 38.86 5.25
315 316 2.363018 TCCGGTCTCTCTGGGCTG 60.363 66.667 0.00 0.00 42.62 4.85
316 317 2.043450 CTCCGGTCTCTCTGGGCT 60.043 66.667 0.00 0.00 42.62 5.19
317 318 1.682684 TTCTCCGGTCTCTCTGGGC 60.683 63.158 0.00 0.00 42.62 5.36
318 319 1.658686 CGTTCTCCGGTCTCTCTGGG 61.659 65.000 0.00 0.00 42.62 4.45
319 320 1.803943 CGTTCTCCGGTCTCTCTGG 59.196 63.158 0.00 0.00 43.70 3.86
320 321 1.137825 GCGTTCTCCGGTCTCTCTG 59.862 63.158 0.00 0.00 36.94 3.35
321 322 2.400158 CGCGTTCTCCGGTCTCTCT 61.400 63.158 0.00 0.00 36.94 3.10
322 323 2.100603 CGCGTTCTCCGGTCTCTC 59.899 66.667 0.00 0.00 36.94 3.20
323 324 3.441290 CCGCGTTCTCCGGTCTCT 61.441 66.667 4.92 0.00 40.84 3.10
324 325 4.493747 CCCGCGTTCTCCGGTCTC 62.494 72.222 4.92 0.00 44.13 3.36
326 327 4.368543 AACCCGCGTTCTCCGGTC 62.369 66.667 4.92 0.00 44.13 4.79
327 328 4.368543 GAACCCGCGTTCTCCGGT 62.369 66.667 4.92 0.00 44.29 5.28
350 351 4.389576 GTTGCTGGCGCCACTTCG 62.390 66.667 29.03 17.85 34.43 3.79
351 352 1.671054 TAGTTGCTGGCGCCACTTC 60.671 57.895 29.03 18.01 38.86 3.01
352 353 1.966451 GTAGTTGCTGGCGCCACTT 60.966 57.895 29.03 11.71 38.86 3.16
353 354 2.358737 GTAGTTGCTGGCGCCACT 60.359 61.111 29.03 23.52 43.68 4.00
354 355 3.431725 GGTAGTTGCTGGCGCCAC 61.432 66.667 29.03 22.57 34.43 5.01
355 356 4.715523 GGGTAGTTGCTGGCGCCA 62.716 66.667 30.59 30.59 34.43 5.69
357 358 3.995506 ATGGGGTAGTTGCTGGCGC 62.996 63.158 0.00 0.00 0.00 6.53
358 359 1.819632 GATGGGGTAGTTGCTGGCG 60.820 63.158 0.00 0.00 0.00 5.69
359 360 1.819632 CGATGGGGTAGTTGCTGGC 60.820 63.158 0.00 0.00 0.00 4.85
360 361 1.819632 GCGATGGGGTAGTTGCTGG 60.820 63.158 0.00 0.00 0.00 4.85
361 362 2.173669 CGCGATGGGGTAGTTGCTG 61.174 63.158 0.00 0.00 0.00 4.41
362 363 1.895020 TTCGCGATGGGGTAGTTGCT 61.895 55.000 10.88 0.00 0.00 3.91
363 364 1.429148 CTTCGCGATGGGGTAGTTGC 61.429 60.000 10.88 0.00 0.00 4.17
364 365 0.174845 TCTTCGCGATGGGGTAGTTG 59.825 55.000 20.35 0.00 0.00 3.16
365 366 0.175073 GTCTTCGCGATGGGGTAGTT 59.825 55.000 20.35 0.00 0.00 2.24
366 367 1.814527 GTCTTCGCGATGGGGTAGT 59.185 57.895 20.35 0.00 0.00 2.73
367 368 1.299165 CGTCTTCGCGATGGGGTAG 60.299 63.158 20.35 9.38 0.00 3.18
368 369 2.802792 CGTCTTCGCGATGGGGTA 59.197 61.111 20.35 0.00 0.00 3.69
387 388 4.974721 GTGGTGGTGGCAGGTGGG 62.975 72.222 0.00 0.00 0.00 4.61
388 389 1.852157 ATAGTGGTGGTGGCAGGTGG 61.852 60.000 0.00 0.00 0.00 4.61
389 390 0.677731 CATAGTGGTGGTGGCAGGTG 60.678 60.000 0.00 0.00 0.00 4.00
390 391 1.685224 CATAGTGGTGGTGGCAGGT 59.315 57.895 0.00 0.00 0.00 4.00
391 392 1.077501 CCATAGTGGTGGTGGCAGG 60.078 63.158 0.00 0.00 34.46 4.85
392 393 1.077501 CCCATAGTGGTGGTGGCAG 60.078 63.158 0.00 0.00 37.57 4.85
393 394 2.611505 CCCCATAGTGGTGGTGGCA 61.612 63.158 0.00 0.00 37.57 4.92
394 395 2.275418 CCCCATAGTGGTGGTGGC 59.725 66.667 0.00 0.00 37.57 5.01
395 396 3.006677 CCCCCATAGTGGTGGTGG 58.993 66.667 0.00 0.00 37.57 4.61
429 430 4.489771 CATCCTGGCCCCACGGTC 62.490 72.222 0.00 0.00 0.00 4.79
430 431 3.935456 TACATCCTGGCCCCACGGT 62.935 63.158 0.00 0.00 0.00 4.83
431 432 2.675242 TTACATCCTGGCCCCACGG 61.675 63.158 0.00 0.00 0.00 4.94
432 433 1.451387 GTTACATCCTGGCCCCACG 60.451 63.158 0.00 0.00 0.00 4.94
433 434 1.451387 CGTTACATCCTGGCCCCAC 60.451 63.158 0.00 0.00 0.00 4.61
434 435 1.202099 TTCGTTACATCCTGGCCCCA 61.202 55.000 0.00 0.00 0.00 4.96
435 436 0.182775 ATTCGTTACATCCTGGCCCC 59.817 55.000 0.00 0.00 0.00 5.80
436 437 1.594331 GATTCGTTACATCCTGGCCC 58.406 55.000 0.00 0.00 0.00 5.80
437 438 1.134220 TGGATTCGTTACATCCTGGCC 60.134 52.381 0.00 0.00 40.99 5.36
438 439 1.940613 GTGGATTCGTTACATCCTGGC 59.059 52.381 3.84 0.00 40.99 4.85
439 440 2.561569 GGTGGATTCGTTACATCCTGG 58.438 52.381 3.84 0.00 40.99 4.45
440 441 2.561569 GGGTGGATTCGTTACATCCTG 58.438 52.381 3.84 0.00 36.36 3.86
441 442 1.489230 GGGGTGGATTCGTTACATCCT 59.511 52.381 3.84 0.00 39.76 3.24
442 443 1.808891 CGGGGTGGATTCGTTACATCC 60.809 57.143 0.00 0.00 38.99 3.51
443 444 1.578583 CGGGGTGGATTCGTTACATC 58.421 55.000 0.00 0.00 0.00 3.06
444 445 0.463116 GCGGGGTGGATTCGTTACAT 60.463 55.000 0.00 0.00 0.00 2.29
445 446 1.078988 GCGGGGTGGATTCGTTACA 60.079 57.895 0.00 0.00 0.00 2.41
446 447 1.816679 GGCGGGGTGGATTCGTTAC 60.817 63.158 0.00 0.00 0.00 2.50
447 448 2.291801 TGGCGGGGTGGATTCGTTA 61.292 57.895 0.00 0.00 0.00 3.18
448 449 3.642503 TGGCGGGGTGGATTCGTT 61.643 61.111 0.00 0.00 0.00 3.85
449 450 4.404098 GTGGCGGGGTGGATTCGT 62.404 66.667 0.00 0.00 0.00 3.85
451 452 4.041762 TGGTGGCGGGGTGGATTC 62.042 66.667 0.00 0.00 0.00 2.52
452 453 4.360405 GTGGTGGCGGGGTGGATT 62.360 66.667 0.00 0.00 0.00 3.01
516 517 4.660938 AAAGCCACCTCCACCCGC 62.661 66.667 0.00 0.00 0.00 6.13
517 518 2.359975 GAAAGCCACCTCCACCCG 60.360 66.667 0.00 0.00 0.00 5.28
518 519 2.035783 GGAAAGCCACCTCCACCC 59.964 66.667 0.00 0.00 0.00 4.61
519 520 2.035783 GGGAAAGCCACCTCCACC 59.964 66.667 0.00 0.00 35.15 4.61
520 521 2.359975 CGGGAAAGCCACCTCCAC 60.360 66.667 0.00 0.00 35.15 4.02
521 522 3.646715 CCGGGAAAGCCACCTCCA 61.647 66.667 0.00 0.00 35.15 3.86
583 584 2.882403 AAAACCCACACCCACCCACC 62.882 60.000 0.00 0.00 0.00 4.61
584 585 1.382009 AAAACCCACACCCACCCAC 60.382 57.895 0.00 0.00 0.00 4.61
585 586 1.075896 GAAAACCCACACCCACCCA 60.076 57.895 0.00 0.00 0.00 4.51
586 587 2.197605 CGAAAACCCACACCCACCC 61.198 63.158 0.00 0.00 0.00 4.61
587 588 2.852180 GCGAAAACCCACACCCACC 61.852 63.158 0.00 0.00 0.00 4.61
588 589 1.668101 TTGCGAAAACCCACACCCAC 61.668 55.000 0.00 0.00 0.00 4.61
589 590 0.970937 TTTGCGAAAACCCACACCCA 60.971 50.000 0.00 0.00 0.00 4.51
590 591 0.175989 TTTTGCGAAAACCCACACCC 59.824 50.000 0.00 0.00 0.00 4.61
591 592 2.011540 TTTTTGCGAAAACCCACACC 57.988 45.000 7.81 0.00 30.07 4.16
616 617 7.766738 TGCTTTGCAAATCATATTGTCAATGAT 59.233 29.630 13.23 2.27 38.42 2.45
640 641 9.599866 AGATGGGCTTACTTTATTTATTTTTGC 57.400 29.630 0.00 0.00 0.00 3.68
755 760 3.615937 TGTTGAGCTCTCGTACTACTACG 59.384 47.826 16.19 0.00 46.10 3.51
756 761 5.542616 TTGTTGAGCTCTCGTACTACTAC 57.457 43.478 16.19 0.00 0.00 2.73
800 805 1.136500 GGCGATTAGGAAACCGAGTCT 59.864 52.381 0.00 0.00 0.00 3.24
818 823 2.125512 ACTCGCGAGTTGGATGGC 60.126 61.111 34.98 0.00 38.83 4.40
877 882 2.124695 GGCTGCGGGAGGGTTTAG 60.125 66.667 0.00 0.00 0.00 1.85
956 961 2.486042 GTCGAGAGCGGTGGACTC 59.514 66.667 0.00 0.00 38.28 3.36
976 981 0.799534 GTATCGCACGTACGTTGGCT 60.800 55.000 20.23 7.87 0.00 4.75
977 982 1.627424 GTATCGCACGTACGTTGGC 59.373 57.895 20.23 18.89 0.00 4.52
989 994 1.457303 GGAACTGCATGATCGTATCGC 59.543 52.381 0.00 0.00 0.00 4.58
1164 1169 2.358247 GCGCCCTTCTTGTCCGAA 60.358 61.111 0.00 0.00 0.00 4.30
1388 1393 4.069232 CGCGCCTGTCCTCTTCCA 62.069 66.667 0.00 0.00 0.00 3.53
1479 1484 2.752238 CTCGCCGAGTGGTCTCCT 60.752 66.667 5.82 0.00 37.40 3.69
1692 1697 2.444624 CGGCCACGACTTGTCGATG 61.445 63.158 26.65 19.44 44.60 3.84
1915 1920 2.285743 GGCCTCCACCTCCTTCCT 60.286 66.667 0.00 0.00 0.00 3.36
2136 2144 7.846644 AAACATCAACAAACACAACATGATT 57.153 28.000 0.00 0.00 0.00 2.57
2164 2177 0.259938 GATGGACAGCCCTCCCAAAT 59.740 55.000 0.00 0.00 33.15 2.32
2268 2282 5.742063 TGGAAGATCTCGTCTAACTACTGA 58.258 41.667 0.00 0.00 35.67 3.41
2280 2294 1.212616 GACGGCAATGGAAGATCTCG 58.787 55.000 0.00 0.00 0.00 4.04
2358 2375 0.179032 AAACCAGTCCACATGCGTGA 60.179 50.000 14.17 0.00 46.80 4.35
2364 2381 5.445964 ACAAAGAAGTAAACCAGTCCACAT 58.554 37.500 0.00 0.00 0.00 3.21
2417 2436 7.844009 ACTAGACGATGGACAACCTAAAAATA 58.156 34.615 0.00 0.00 37.04 1.40
2431 2450 1.006832 CCGCCAAAACTAGACGATGG 58.993 55.000 0.00 0.41 0.00 3.51
2440 2459 2.358247 ATCGTCGCCGCCAAAACT 60.358 55.556 0.00 0.00 0.00 2.66
2478 2498 3.495806 GCCTCATCGGGAAGAATCTGAAT 60.496 47.826 0.00 0.00 0.00 2.57
2509 2531 0.325860 AAATGCATCCCCAGCCACAT 60.326 50.000 0.00 0.00 0.00 3.21
2565 2590 4.082523 ACCACGAGGATGCCGGTG 62.083 66.667 5.68 0.00 38.69 4.94
2566 2591 4.082523 CACCACGAGGATGCCGGT 62.083 66.667 5.68 0.00 38.69 5.28
2567 2592 4.838152 CCACCACGAGGATGCCGG 62.838 72.222 5.68 0.00 38.69 6.13
2642 2667 4.078805 TCTGCTCCTATACTACCTCCCAAA 60.079 45.833 0.00 0.00 0.00 3.28
2672 2697 4.032217 GTCTTTCACATGTCGTAGATGCAG 59.968 45.833 0.00 0.00 40.67 4.41
2679 2711 3.422876 CGTTTCGTCTTTCACATGTCGTA 59.577 43.478 0.00 0.00 0.00 3.43
2715 2747 2.793278 TACATGTCATCCACGATCCG 57.207 50.000 0.00 0.00 0.00 4.18
2718 2750 4.422073 AACCATACATGTCATCCACGAT 57.578 40.909 0.00 0.00 0.00 3.73
2742 2774 2.155155 CACAACTAAGACGCCGAAGAAC 59.845 50.000 0.00 0.00 0.00 3.01
2769 2801 3.133542 TGATCGAACTCCAGATCTTGCAT 59.866 43.478 0.00 0.00 42.62 3.96
2773 2805 2.755655 ACGTGATCGAACTCCAGATCTT 59.244 45.455 0.00 0.00 42.62 2.40
2790 2822 1.219522 GACAACACCCCGAAGACGTG 61.220 60.000 0.00 0.00 37.88 4.49
2795 2827 0.179056 ACTGTGACAACACCCCGAAG 60.179 55.000 0.00 0.00 45.40 3.79
2863 2895 0.041839 GATATGCAGCTTTGCGGACG 60.042 55.000 0.00 0.00 37.69 4.79
2923 2955 4.518211 ACAGCCACTGAAGAAAAGAATGAG 59.482 41.667 0.78 0.00 35.18 2.90
2938 2970 2.195683 CCCACCACAACAGCCACT 59.804 61.111 0.00 0.00 0.00 4.00
2955 2987 0.895530 TCCGTCACCTGTCTTCATCC 59.104 55.000 0.00 0.00 0.00 3.51
2957 2989 0.243907 CGTCCGTCACCTGTCTTCAT 59.756 55.000 0.00 0.00 0.00 2.57
2958 2990 1.105167 ACGTCCGTCACCTGTCTTCA 61.105 55.000 0.00 0.00 0.00 3.02
2963 2995 1.108727 TACCAACGTCCGTCACCTGT 61.109 55.000 0.00 0.00 0.00 4.00
2993 3025 6.442513 AACTAAAAAGATAGCAGCACATCC 57.557 37.500 0.00 0.00 0.00 3.51
2999 3031 7.435192 ACACAACAAAACTAAAAAGATAGCAGC 59.565 33.333 0.00 0.00 0.00 5.25
3022 3054 4.056050 ACAAGTCATGTAAGAACCGACAC 58.944 43.478 0.00 0.00 41.63 3.67
3093 3125 0.524862 GGTGAAGCGGTTCTCTCGTA 59.475 55.000 26.05 3.86 33.38 3.43
3095 3127 1.801913 CGGTGAAGCGGTTCTCTCG 60.802 63.158 26.05 21.57 33.38 4.04
3096 3128 2.095252 GCGGTGAAGCGGTTCTCTC 61.095 63.158 26.05 16.24 33.38 3.20
3097 3129 2.048127 GCGGTGAAGCGGTTCTCT 60.048 61.111 26.05 0.00 33.38 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.