Multiple sequence alignment - TraesCS1B01G180700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G180700 chr1B 100.000 6342 0 0 1 6342 327353240 327359581 0.000000e+00 11712.0
1 TraesCS1B01G180700 chr1B 100.000 30 0 0 4408 4437 505654049 505654078 8.880000e-04 56.5
2 TraesCS1B01G180700 chr1D 94.959 5991 171 60 1 5934 208405391 208399475 0.000000e+00 9269.0
3 TraesCS1B01G180700 chr1D 95.969 5557 155 33 1 5522 227724349 227729871 0.000000e+00 8957.0
4 TraesCS1B01G180700 chr1D 87.470 423 27 16 5527 5934 227730185 227730596 1.250000e-126 464.0
5 TraesCS1B01G180700 chr1D 77.031 357 63 9 5996 6342 298281045 298280698 3.020000e-43 187.0
6 TraesCS1B01G180700 chr1D 78.756 193 36 4 6150 6340 420551248 420551059 2.400000e-24 124.0
7 TraesCS1B01G180700 chr1D 100.000 31 0 0 4406 4436 452624799 452624769 2.470000e-04 58.4
8 TraesCS1B01G180700 chr1A 94.740 5152 141 62 682 5776 295233052 295227974 0.000000e+00 7893.0
9 TraesCS1B01G180700 chr1A 87.853 354 39 3 401 750 295233300 295232947 4.580000e-111 412.0
10 TraesCS1B01G180700 chr2D 91.244 217 17 2 1 216 112834620 112834835 1.730000e-75 294.0
11 TraesCS1B01G180700 chr2D 78.218 303 57 9 6039 6339 645206666 645206371 1.090000e-42 185.0
12 TraesCS1B01G180700 chr2D 100.000 31 0 0 4406 4436 506776549 506776579 2.470000e-04 58.4
13 TraesCS1B01G180700 chr5A 91.204 216 17 2 3 216 290611648 290611863 6.220000e-75 292.0
14 TraesCS1B01G180700 chr2B 90.783 217 19 1 1 216 163154914 163155130 8.040000e-74 289.0
15 TraesCS1B01G180700 chr2B 76.177 361 68 15 5993 6342 152605408 152605055 2.350000e-39 174.0
16 TraesCS1B01G180700 chr7D 90.411 219 19 2 3 220 257187151 257187368 2.890000e-73 287.0
17 TraesCS1B01G180700 chr7D 90.654 214 19 1 4 216 490841797 490841584 3.740000e-72 283.0
18 TraesCS1B01G180700 chr7D 77.538 325 60 6 6019 6342 572418885 572418573 3.910000e-42 183.0
19 TraesCS1B01G180700 chr7D 100.000 31 0 0 4406 4436 242803705 242803675 2.470000e-04 58.4
20 TraesCS1B01G180700 chr4A 90.741 216 18 2 3 216 198106401 198106616 2.890000e-73 287.0
21 TraesCS1B01G180700 chr6D 90.000 220 20 2 1 219 307723065 307722847 3.740000e-72 283.0
22 TraesCS1B01G180700 chr7B 79.666 359 58 9 5994 6342 687899570 687899217 1.770000e-60 244.0
23 TraesCS1B01G180700 chr3B 78.395 324 46 16 5994 6305 96880943 96880632 8.390000e-44 189.0
24 TraesCS1B01G180700 chr3A 75.630 357 69 15 5997 6342 101662124 101661775 1.830000e-35 161.0
25 TraesCS1B01G180700 chr4D 75.209 359 69 15 5993 6339 385713604 385713954 1.100000e-32 152.0
26 TraesCS1B01G180700 chr6A 75.145 346 71 14 5993 6329 416542157 416541818 1.420000e-31 148.0
27 TraesCS1B01G180700 chr5B 73.056 360 77 18 5988 6341 129316110 129316455 6.720000e-20 110.0
28 TraesCS1B01G180700 chr6B 100.000 31 0 0 4406 4436 51137529 51137559 2.470000e-04 58.4
29 TraesCS1B01G180700 chr5D 100.000 31 0 0 4406 4436 175769120 175769090 2.470000e-04 58.4
30 TraesCS1B01G180700 chr2A 100.000 31 0 0 4406 4436 626591080 626591050 2.470000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G180700 chr1B 327353240 327359581 6341 False 11712.0 11712 100.0000 1 6342 1 chr1B.!!$F1 6341
1 TraesCS1B01G180700 chr1D 208399475 208405391 5916 True 9269.0 9269 94.9590 1 5934 1 chr1D.!!$R1 5933
2 TraesCS1B01G180700 chr1D 227724349 227730596 6247 False 4710.5 8957 91.7195 1 5934 2 chr1D.!!$F1 5933
3 TraesCS1B01G180700 chr1A 295227974 295233300 5326 True 4152.5 7893 91.2965 401 5776 2 chr1A.!!$R1 5375

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
590 596 0.958876 TAGTCGCTCCTCTGCAACGA 60.959 55.000 0.00 0.00 0.00 3.85 F
1342 1375 0.459078 GGTCGCTGGTTAGTACTCCC 59.541 60.000 0.00 1.04 0.00 4.30 F
1665 1718 2.396601 TGAAACTGTACGTGTTAGGCG 58.603 47.619 0.00 0.00 0.00 5.52 F
2698 2763 1.935873 ACTGATGACCAAATGATCGCG 59.064 47.619 0.00 0.00 0.00 5.87 F
2776 2841 8.563502 TCTCTCCTTAGGAAGTATGTTAAGGTA 58.436 37.037 1.41 0.24 41.74 3.08 F
5144 5226 0.249238 CGAGGAAGCGGAAGATGAGG 60.249 60.000 0.00 0.00 0.00 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1554 1607 2.416747 CGCCTTTGTCACATCTCTCAA 58.583 47.619 0.00 0.00 0.00 3.02 R
2698 2763 4.799428 GCTCTGACACGGAGAATAGTAAAC 59.201 45.833 11.17 0.00 39.05 2.01 R
2777 2842 4.826733 TGAAATGAGAAGGCAAAGCTAACA 59.173 37.500 0.00 0.00 0.00 2.41 R
4431 4507 5.441500 TCCCTCTGTTCACAAATGTAAACA 58.558 37.500 2.48 2.48 0.00 2.83 R
5265 5350 2.290464 TGTTCAACGGTTGGTACTTGG 58.710 47.619 19.91 0.00 0.00 3.61 R
6190 6600 0.038526 CCTTACTCGCTCACGGTGTT 60.039 55.000 8.17 0.00 40.63 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 6.057321 TCTTTTTACCGTGTAGGGATTGAT 57.943 37.500 0.00 0.00 46.96 2.57
36 37 3.381335 ACCGTGTAGGGATTGATAACCT 58.619 45.455 0.00 0.00 46.96 3.50
53 55 3.272574 ACCTCTCTTACACGTCGGATA 57.727 47.619 0.00 0.00 0.00 2.59
77 79 7.232945 ACAATTATTTGTTCTTTGTGTGCAC 57.767 32.000 10.75 10.75 43.57 4.57
174 176 4.127171 ACCGTAGTTGTATTGCATCATCC 58.873 43.478 0.00 0.00 0.00 3.51
301 303 7.365741 ACAATTGTGCTTTTCACTTATCAGAG 58.634 34.615 11.07 0.00 45.81 3.35
311 313 5.562506 TCACTTATCAGAGAGTACAACCG 57.437 43.478 0.00 0.00 0.00 4.44
499 505 1.378531 GTGCAGGACACTTGACAACA 58.621 50.000 0.00 0.00 46.41 3.33
500 506 1.742831 GTGCAGGACACTTGACAACAA 59.257 47.619 0.00 0.00 46.41 2.83
566 572 1.298382 AGGACCCCTGGGAGTAATCAT 59.702 52.381 16.20 0.00 38.96 2.45
590 596 0.958876 TAGTCGCTCCTCTGCAACGA 60.959 55.000 0.00 0.00 0.00 3.85
692 699 4.280677 CACCCATTTGGCTTACTTTTGAGA 59.719 41.667 0.00 0.00 37.83 3.27
876 901 3.423154 CGCGCAACCCAACTCTCC 61.423 66.667 8.75 0.00 0.00 3.71
926 951 1.101049 GTCTCTCTCTCCCTCGCCTG 61.101 65.000 0.00 0.00 0.00 4.85
1034 1066 1.872237 CGAATACGGTGCGATTCCCAT 60.872 52.381 0.00 0.00 35.72 4.00
1090 1123 1.986378 CGTTTTTCTGATCGACTCGCT 59.014 47.619 0.00 0.00 0.00 4.93
1339 1372 5.598769 GATTAATGGTCGCTGGTTAGTACT 58.401 41.667 0.00 0.00 0.00 2.73
1340 1373 3.521947 AATGGTCGCTGGTTAGTACTC 57.478 47.619 0.00 0.00 0.00 2.59
1341 1374 1.180029 TGGTCGCTGGTTAGTACTCC 58.820 55.000 0.00 0.00 0.00 3.85
1342 1375 0.459078 GGTCGCTGGTTAGTACTCCC 59.541 60.000 0.00 1.04 0.00 4.30
1504 1557 3.746492 ACTGACCATTCTAAGCAACGAAC 59.254 43.478 0.00 0.00 0.00 3.95
1545 1598 6.824305 ACTTGGATTGTTGATTTACAGAGG 57.176 37.500 0.00 0.00 0.00 3.69
1665 1718 2.396601 TGAAACTGTACGTGTTAGGCG 58.603 47.619 0.00 0.00 0.00 5.52
1862 1917 3.197265 CTGGACATGTGATTGATGCGTA 58.803 45.455 1.15 0.00 0.00 4.42
1872 1927 6.775088 TGTGATTGATGCGTAAAGAGAATTC 58.225 36.000 0.00 0.00 0.00 2.17
1939 1995 6.973229 GCTTGTGCAATTCCTTTTTGATAT 57.027 33.333 0.00 0.00 39.41 1.63
2227 2292 4.785301 TGCAATAATCCTTCTTCTCCCTG 58.215 43.478 0.00 0.00 0.00 4.45
2698 2763 1.935873 ACTGATGACCAAATGATCGCG 59.064 47.619 0.00 0.00 0.00 5.87
2776 2841 8.563502 TCTCTCCTTAGGAAGTATGTTAAGGTA 58.436 37.037 1.41 0.24 41.74 3.08
2777 2842 9.369672 CTCTCCTTAGGAAGTATGTTAAGGTAT 57.630 37.037 1.41 0.00 41.74 2.73
4431 4507 6.126863 TCCCTCTGTTCACAAATGTAAGAT 57.873 37.500 0.00 0.00 0.00 2.40
4483 4559 8.796475 AGTATATTTTGATTCTTGTGCAGTTGT 58.204 29.630 0.00 0.00 0.00 3.32
4484 4560 7.878477 ATATTTTGATTCTTGTGCAGTTGTG 57.122 32.000 0.00 0.00 0.00 3.33
4485 4561 4.717233 TTTGATTCTTGTGCAGTTGTGT 57.283 36.364 0.00 0.00 0.00 3.72
4486 4562 4.717233 TTGATTCTTGTGCAGTTGTGTT 57.283 36.364 0.00 0.00 0.00 3.32
4779 4860 8.902540 TCCGAGTAAATGTATTGATTAATGCT 57.097 30.769 0.00 0.00 31.14 3.79
5144 5226 0.249238 CGAGGAAGCGGAAGATGAGG 60.249 60.000 0.00 0.00 0.00 3.86
5265 5350 3.927854 AGGAGAAGCTAAAGAAACGGAC 58.072 45.455 0.00 0.00 0.00 4.79
5280 5365 0.249996 CGGACCAAGTACCAACCGTT 60.250 55.000 0.00 0.00 36.38 4.44
5395 5480 1.927174 GACGACGTGCTATGCTTTCAT 59.073 47.619 4.58 0.00 36.73 2.57
5413 5498 4.025040 TCATTCATGAGAAACACCTGCT 57.975 40.909 0.00 0.00 37.29 4.24
5419 5504 2.564771 TGAGAAACACCTGCTTGTCAG 58.435 47.619 0.00 0.00 42.49 3.51
5430 5515 4.326504 CTGCTTGTCAGGGAAATTTTGT 57.673 40.909 0.00 0.00 39.15 2.83
5482 5567 9.752961 CTTTGTCATTTCCATGCATTTATATCA 57.247 29.630 0.00 0.00 0.00 2.15
5578 5972 4.808558 TGTTTTTCAGGCTGATTATGTGC 58.191 39.130 19.50 6.06 0.00 4.57
5579 5973 4.176271 GTTTTTCAGGCTGATTATGTGCC 58.824 43.478 19.50 0.00 46.42 5.01
5699 6093 3.507233 TGACCATTCCTGTCATTTTCAGC 59.493 43.478 0.00 0.00 37.80 4.26
5748 6142 2.594592 AAGCTTCGTTTGCCGCCT 60.595 55.556 0.00 0.00 36.19 5.52
5752 6146 1.652012 CTTCGTTTGCCGCCTTGAA 59.348 52.632 0.00 0.00 36.19 2.69
5756 6150 0.318614 CGTTTGCCGCCTTGAAATGT 60.319 50.000 0.00 0.00 0.00 2.71
5770 6164 6.761242 GCCTTGAAATGTTTAGGAAGTTGTTT 59.239 34.615 0.00 0.00 0.00 2.83
5773 6167 9.971744 CTTGAAATGTTTAGGAAGTTGTTTTTG 57.028 29.630 0.00 0.00 0.00 2.44
5777 6171 8.623310 AATGTTTAGGAAGTTGTTTTTGTACG 57.377 30.769 0.00 0.00 0.00 3.67
5778 6172 7.375106 TGTTTAGGAAGTTGTTTTTGTACGA 57.625 32.000 0.00 0.00 0.00 3.43
5779 6173 7.814642 TGTTTAGGAAGTTGTTTTTGTACGAA 58.185 30.769 0.00 0.00 0.00 3.85
5781 6175 7.846644 TTAGGAAGTTGTTTTTGTACGAAGA 57.153 32.000 0.00 0.00 0.00 2.87
5782 6176 6.359480 AGGAAGTTGTTTTTGTACGAAGAG 57.641 37.500 0.00 0.00 0.00 2.85
5827 6237 9.814899 GTGCAAGAGATAGAGTAATGCATATAT 57.185 33.333 0.00 0.00 43.29 0.86
5852 6262 7.751768 ATACTGAAGAAAGAAGAAGTTTGGG 57.248 36.000 0.00 0.00 0.00 4.12
5925 6335 2.164422 GGTTTGCCTCCTTAACATCTGC 59.836 50.000 0.00 0.00 0.00 4.26
5959 6369 4.664753 CATTTTCGTGAATGCGCAATAG 57.335 40.909 17.11 4.65 31.00 1.73
5960 6370 4.341935 CATTTTCGTGAATGCGCAATAGA 58.658 39.130 17.11 7.28 31.00 1.98
5961 6371 4.411993 TTTTCGTGAATGCGCAATAGAA 57.588 36.364 17.11 13.26 0.00 2.10
5962 6372 4.614555 TTTCGTGAATGCGCAATAGAAT 57.385 36.364 17.11 0.00 0.00 2.40
5963 6373 5.726729 TTTCGTGAATGCGCAATAGAATA 57.273 34.783 17.11 5.03 0.00 1.75
5964 6374 5.726729 TTCGTGAATGCGCAATAGAATAA 57.273 34.783 17.11 0.74 0.00 1.40
5965 6375 5.328886 TCGTGAATGCGCAATAGAATAAG 57.671 39.130 17.11 0.00 0.00 1.73
5966 6376 4.808895 TCGTGAATGCGCAATAGAATAAGT 59.191 37.500 17.11 0.00 0.00 2.24
5967 6377 5.980715 TCGTGAATGCGCAATAGAATAAGTA 59.019 36.000 17.11 0.00 0.00 2.24
5968 6378 6.065153 CGTGAATGCGCAATAGAATAAGTAC 58.935 40.000 17.11 0.01 0.00 2.73
5969 6379 6.292114 CGTGAATGCGCAATAGAATAAGTACA 60.292 38.462 17.11 0.00 0.00 2.90
5970 6380 7.065894 GTGAATGCGCAATAGAATAAGTACAG 58.934 38.462 17.11 0.00 0.00 2.74
5971 6381 6.761242 TGAATGCGCAATAGAATAAGTACAGT 59.239 34.615 17.11 0.00 0.00 3.55
5972 6382 5.966636 TGCGCAATAGAATAAGTACAGTG 57.033 39.130 8.16 0.00 0.00 3.66
5973 6383 4.808895 TGCGCAATAGAATAAGTACAGTGG 59.191 41.667 8.16 0.00 0.00 4.00
5974 6384 5.047847 GCGCAATAGAATAAGTACAGTGGA 58.952 41.667 0.30 0.00 0.00 4.02
5975 6385 5.175856 GCGCAATAGAATAAGTACAGTGGAG 59.824 44.000 0.30 0.00 0.00 3.86
5976 6386 5.692204 CGCAATAGAATAAGTACAGTGGAGG 59.308 44.000 0.00 0.00 0.00 4.30
5977 6387 6.583562 GCAATAGAATAAGTACAGTGGAGGT 58.416 40.000 0.00 0.00 0.00 3.85
5978 6388 7.469594 CGCAATAGAATAAGTACAGTGGAGGTA 60.470 40.741 0.00 0.00 0.00 3.08
5979 6389 7.652507 GCAATAGAATAAGTACAGTGGAGGTAC 59.347 40.741 0.00 0.00 41.05 3.34
5980 6390 8.692710 CAATAGAATAAGTACAGTGGAGGTACA 58.307 37.037 0.00 0.00 42.73 2.90
5981 6391 8.834004 ATAGAATAAGTACAGTGGAGGTACAA 57.166 34.615 0.00 0.00 42.73 2.41
5982 6392 6.932947 AGAATAAGTACAGTGGAGGTACAAC 58.067 40.000 0.00 0.00 42.73 3.32
5983 6393 6.495872 AGAATAAGTACAGTGGAGGTACAACA 59.504 38.462 0.00 0.00 42.73 3.33
5984 6394 4.332428 AAGTACAGTGGAGGTACAACAC 57.668 45.455 0.00 0.27 42.73 3.32
5985 6395 3.302161 AGTACAGTGGAGGTACAACACA 58.698 45.455 13.82 0.00 42.73 3.72
5986 6396 2.614829 ACAGTGGAGGTACAACACAC 57.385 50.000 13.82 8.30 39.18 3.82
5987 6397 1.834896 ACAGTGGAGGTACAACACACA 59.165 47.619 13.82 0.00 39.18 3.72
5988 6398 2.237643 ACAGTGGAGGTACAACACACAA 59.762 45.455 13.82 0.00 39.18 3.33
5989 6399 3.118038 ACAGTGGAGGTACAACACACAAT 60.118 43.478 13.82 0.31 39.18 2.71
5990 6400 3.250762 CAGTGGAGGTACAACACACAATG 59.749 47.826 13.82 2.30 39.18 2.82
5991 6401 3.135712 AGTGGAGGTACAACACACAATGA 59.864 43.478 13.82 0.00 39.18 2.57
5992 6402 3.880490 GTGGAGGTACAACACACAATGAA 59.120 43.478 8.40 0.00 37.23 2.57
5993 6403 4.336993 GTGGAGGTACAACACACAATGAAA 59.663 41.667 8.40 0.00 37.23 2.69
5994 6404 4.950475 TGGAGGTACAACACACAATGAAAA 59.050 37.500 0.00 0.00 0.00 2.29
5995 6405 5.596361 TGGAGGTACAACACACAATGAAAAT 59.404 36.000 0.00 0.00 0.00 1.82
5996 6406 6.773200 TGGAGGTACAACACACAATGAAAATA 59.227 34.615 0.00 0.00 0.00 1.40
5997 6407 7.040755 TGGAGGTACAACACACAATGAAAATAG 60.041 37.037 0.00 0.00 0.00 1.73
5998 6408 7.174253 GGAGGTACAACACACAATGAAAATAGA 59.826 37.037 0.00 0.00 0.00 1.98
5999 6409 8.458573 AGGTACAACACACAATGAAAATAGAA 57.541 30.769 0.00 0.00 0.00 2.10
6000 6410 9.077885 AGGTACAACACACAATGAAAATAGAAT 57.922 29.630 0.00 0.00 0.00 2.40
6026 6436 8.867112 AAGTACAATGTAGATATAACACACGG 57.133 34.615 0.00 0.00 0.00 4.94
6027 6437 6.921857 AGTACAATGTAGATATAACACACGGC 59.078 38.462 0.00 0.00 0.00 5.68
6028 6438 5.666462 ACAATGTAGATATAACACACGGCA 58.334 37.500 0.00 0.00 0.00 5.69
6029 6439 5.522460 ACAATGTAGATATAACACACGGCAC 59.478 40.000 0.00 0.00 0.00 5.01
6030 6440 4.722361 TGTAGATATAACACACGGCACA 57.278 40.909 0.00 0.00 0.00 4.57
6031 6441 5.074584 TGTAGATATAACACACGGCACAA 57.925 39.130 0.00 0.00 0.00 3.33
6032 6442 5.480205 TGTAGATATAACACACGGCACAAA 58.520 37.500 0.00 0.00 0.00 2.83
6033 6443 4.939509 AGATATAACACACGGCACAAAC 57.060 40.909 0.00 0.00 0.00 2.93
6034 6444 4.320023 AGATATAACACACGGCACAAACA 58.680 39.130 0.00 0.00 0.00 2.83
6035 6445 2.766970 ATAACACACGGCACAAACAC 57.233 45.000 0.00 0.00 0.00 3.32
6036 6446 1.450025 TAACACACGGCACAAACACA 58.550 45.000 0.00 0.00 0.00 3.72
6037 6447 0.170116 AACACACGGCACAAACACAG 59.830 50.000 0.00 0.00 0.00 3.66
6038 6448 1.063972 CACACGGCACAAACACAGG 59.936 57.895 0.00 0.00 0.00 4.00
6039 6449 2.026014 CACGGCACAAACACAGGC 59.974 61.111 0.00 0.00 0.00 4.85
6040 6450 2.439338 ACGGCACAAACACAGGCA 60.439 55.556 0.00 0.00 0.00 4.75
6041 6451 2.332514 CGGCACAAACACAGGCAG 59.667 61.111 0.00 0.00 0.00 4.85
6042 6452 2.730094 GGCACAAACACAGGCAGG 59.270 61.111 0.00 0.00 0.00 4.85
6043 6453 2.028043 GCACAAACACAGGCAGGC 59.972 61.111 0.00 0.00 0.00 4.85
6044 6454 2.332514 CACAAACACAGGCAGGCG 59.667 61.111 0.00 0.00 0.00 5.52
6045 6455 2.186160 CACAAACACAGGCAGGCGA 61.186 57.895 0.00 0.00 0.00 5.54
6046 6456 1.893808 ACAAACACAGGCAGGCGAG 60.894 57.895 0.00 0.00 0.00 5.03
6047 6457 1.597854 CAAACACAGGCAGGCGAGA 60.598 57.895 0.00 0.00 0.00 4.04
6048 6458 1.148273 AAACACAGGCAGGCGAGAA 59.852 52.632 0.00 0.00 0.00 2.87
6049 6459 1.166531 AAACACAGGCAGGCGAGAAC 61.167 55.000 0.00 0.00 0.00 3.01
6050 6460 2.031012 CACAGGCAGGCGAGAACA 59.969 61.111 0.00 0.00 0.00 3.18
6051 6461 1.597854 CACAGGCAGGCGAGAACAA 60.598 57.895 0.00 0.00 0.00 2.83
6052 6462 1.302033 ACAGGCAGGCGAGAACAAG 60.302 57.895 0.00 0.00 0.00 3.16
6053 6463 2.037136 CAGGCAGGCGAGAACAAGG 61.037 63.158 0.00 0.00 0.00 3.61
6054 6464 2.032681 GGCAGGCGAGAACAAGGT 59.967 61.111 0.00 0.00 0.00 3.50
6055 6465 2.328099 GGCAGGCGAGAACAAGGTG 61.328 63.158 0.00 0.00 0.00 4.00
6056 6466 2.970974 GCAGGCGAGAACAAGGTGC 61.971 63.158 0.00 0.00 0.00 5.01
6057 6467 2.357517 AGGCGAGAACAAGGTGCG 60.358 61.111 0.00 0.00 0.00 5.34
6058 6468 4.090057 GGCGAGAACAAGGTGCGC 62.090 66.667 0.00 0.00 46.20 6.09
6059 6469 4.430423 GCGAGAACAAGGTGCGCG 62.430 66.667 0.00 0.00 37.44 6.86
6060 6470 3.777925 CGAGAACAAGGTGCGCGG 61.778 66.667 8.83 0.00 30.94 6.46
6061 6471 2.357034 GAGAACAAGGTGCGCGGA 60.357 61.111 8.83 0.00 0.00 5.54
6062 6472 2.357517 AGAACAAGGTGCGCGGAG 60.358 61.111 8.83 0.00 0.00 4.63
6076 6486 2.846371 CGGAGCAAAGAGACAAGGG 58.154 57.895 0.00 0.00 0.00 3.95
6077 6487 0.321671 CGGAGCAAAGAGACAAGGGA 59.678 55.000 0.00 0.00 0.00 4.20
6078 6488 1.065854 CGGAGCAAAGAGACAAGGGAT 60.066 52.381 0.00 0.00 0.00 3.85
6079 6489 2.363683 GGAGCAAAGAGACAAGGGATG 58.636 52.381 0.00 0.00 0.00 3.51
6080 6490 1.742268 GAGCAAAGAGACAAGGGATGC 59.258 52.381 0.00 0.00 0.00 3.91
6081 6491 1.353694 AGCAAAGAGACAAGGGATGCT 59.646 47.619 0.00 0.00 37.80 3.79
6082 6492 2.165998 GCAAAGAGACAAGGGATGCTT 58.834 47.619 0.00 0.00 0.00 3.91
6083 6493 2.094854 GCAAAGAGACAAGGGATGCTTG 60.095 50.000 0.00 0.00 37.77 4.01
6084 6494 2.490903 CAAAGAGACAAGGGATGCTTGG 59.509 50.000 0.00 0.00 36.23 3.61
6085 6495 0.034670 AGAGACAAGGGATGCTTGGC 60.035 55.000 0.00 0.00 39.98 4.52
6086 6496 1.000396 AGACAAGGGATGCTTGGCC 60.000 57.895 0.00 0.00 40.53 5.36
6087 6497 2.037847 ACAAGGGATGCTTGGCCC 59.962 61.111 0.00 0.00 45.04 5.80
6091 6501 3.140814 GGGATGCTTGGCCCGAAC 61.141 66.667 0.00 0.00 34.00 3.95
6092 6502 2.361104 GGATGCTTGGCCCGAACA 60.361 61.111 0.00 0.00 0.00 3.18
6093 6503 2.409870 GGATGCTTGGCCCGAACAG 61.410 63.158 0.00 0.00 0.00 3.16
6094 6504 1.377202 GATGCTTGGCCCGAACAGA 60.377 57.895 0.00 0.00 0.00 3.41
6095 6505 0.960364 GATGCTTGGCCCGAACAGAA 60.960 55.000 0.00 0.00 0.00 3.02
6096 6506 0.539438 ATGCTTGGCCCGAACAGAAA 60.539 50.000 0.00 0.00 0.00 2.52
6097 6507 0.539438 TGCTTGGCCCGAACAGAAAT 60.539 50.000 0.00 0.00 0.00 2.17
6098 6508 1.271652 TGCTTGGCCCGAACAGAAATA 60.272 47.619 0.00 0.00 0.00 1.40
6099 6509 1.132453 GCTTGGCCCGAACAGAAATAC 59.868 52.381 0.00 0.00 0.00 1.89
6100 6510 2.432444 CTTGGCCCGAACAGAAATACA 58.568 47.619 0.00 0.00 0.00 2.29
6101 6511 2.570415 TGGCCCGAACAGAAATACAA 57.430 45.000 0.00 0.00 0.00 2.41
6102 6512 2.156098 TGGCCCGAACAGAAATACAAC 58.844 47.619 0.00 0.00 0.00 3.32
6103 6513 2.156098 GGCCCGAACAGAAATACAACA 58.844 47.619 0.00 0.00 0.00 3.33
6104 6514 2.095415 GGCCCGAACAGAAATACAACAC 60.095 50.000 0.00 0.00 0.00 3.32
6105 6515 2.550606 GCCCGAACAGAAATACAACACA 59.449 45.455 0.00 0.00 0.00 3.72
6106 6516 3.003897 GCCCGAACAGAAATACAACACAA 59.996 43.478 0.00 0.00 0.00 3.33
6107 6517 4.533222 CCCGAACAGAAATACAACACAAC 58.467 43.478 0.00 0.00 0.00 3.32
6108 6518 4.274950 CCCGAACAGAAATACAACACAACT 59.725 41.667 0.00 0.00 0.00 3.16
6109 6519 5.467399 CCCGAACAGAAATACAACACAACTA 59.533 40.000 0.00 0.00 0.00 2.24
6110 6520 6.017770 CCCGAACAGAAATACAACACAACTAA 60.018 38.462 0.00 0.00 0.00 2.24
6111 6521 6.849305 CCGAACAGAAATACAACACAACTAAC 59.151 38.462 0.00 0.00 0.00 2.34
6112 6522 7.254658 CCGAACAGAAATACAACACAACTAACT 60.255 37.037 0.00 0.00 0.00 2.24
6113 6523 8.757789 CGAACAGAAATACAACACAACTAACTA 58.242 33.333 0.00 0.00 0.00 2.24
6123 6533 8.967664 ACAACACAACTAACTAAAATCTACCA 57.032 30.769 0.00 0.00 0.00 3.25
6124 6534 9.398538 ACAACACAACTAACTAAAATCTACCAA 57.601 29.630 0.00 0.00 0.00 3.67
6125 6535 9.878599 CAACACAACTAACTAAAATCTACCAAG 57.121 33.333 0.00 0.00 0.00 3.61
6126 6536 8.095937 ACACAACTAACTAAAATCTACCAAGC 57.904 34.615 0.00 0.00 0.00 4.01
6127 6537 7.174426 ACACAACTAACTAAAATCTACCAAGCC 59.826 37.037 0.00 0.00 0.00 4.35
6128 6538 7.390718 CACAACTAACTAAAATCTACCAAGCCT 59.609 37.037 0.00 0.00 0.00 4.58
6129 6539 7.390718 ACAACTAACTAAAATCTACCAAGCCTG 59.609 37.037 0.00 0.00 0.00 4.85
6130 6540 7.253905 ACTAACTAAAATCTACCAAGCCTGA 57.746 36.000 0.00 0.00 0.00 3.86
6131 6541 7.686434 ACTAACTAAAATCTACCAAGCCTGAA 58.314 34.615 0.00 0.00 0.00 3.02
6132 6542 6.819397 AACTAAAATCTACCAAGCCTGAAC 57.181 37.500 0.00 0.00 0.00 3.18
6133 6543 5.254115 ACTAAAATCTACCAAGCCTGAACC 58.746 41.667 0.00 0.00 0.00 3.62
6134 6544 3.806949 AAATCTACCAAGCCTGAACCA 57.193 42.857 0.00 0.00 0.00 3.67
6135 6545 3.806949 AATCTACCAAGCCTGAACCAA 57.193 42.857 0.00 0.00 0.00 3.67
6136 6546 2.859165 TCTACCAAGCCTGAACCAAG 57.141 50.000 0.00 0.00 0.00 3.61
6137 6547 2.334977 TCTACCAAGCCTGAACCAAGA 58.665 47.619 0.00 0.00 0.00 3.02
6138 6548 2.303022 TCTACCAAGCCTGAACCAAGAG 59.697 50.000 0.00 0.00 0.00 2.85
6139 6549 0.538287 ACCAAGCCTGAACCAAGAGC 60.538 55.000 0.00 0.00 0.00 4.09
6140 6550 1.580845 CCAAGCCTGAACCAAGAGCG 61.581 60.000 0.00 0.00 0.00 5.03
6141 6551 0.603707 CAAGCCTGAACCAAGAGCGA 60.604 55.000 0.00 0.00 0.00 4.93
6142 6552 0.603975 AAGCCTGAACCAAGAGCGAC 60.604 55.000 0.00 0.00 0.00 5.19
6143 6553 1.301716 GCCTGAACCAAGAGCGACA 60.302 57.895 0.00 0.00 0.00 4.35
6144 6554 0.884704 GCCTGAACCAAGAGCGACAA 60.885 55.000 0.00 0.00 0.00 3.18
6145 6555 1.593196 CCTGAACCAAGAGCGACAAA 58.407 50.000 0.00 0.00 0.00 2.83
6146 6556 1.946768 CCTGAACCAAGAGCGACAAAA 59.053 47.619 0.00 0.00 0.00 2.44
6147 6557 2.287009 CCTGAACCAAGAGCGACAAAAC 60.287 50.000 0.00 0.00 0.00 2.43
6148 6558 1.673920 TGAACCAAGAGCGACAAAACC 59.326 47.619 0.00 0.00 0.00 3.27
6149 6559 1.673920 GAACCAAGAGCGACAAAACCA 59.326 47.619 0.00 0.00 0.00 3.67
6150 6560 1.757682 ACCAAGAGCGACAAAACCAA 58.242 45.000 0.00 0.00 0.00 3.67
6151 6561 2.096248 ACCAAGAGCGACAAAACCAAA 58.904 42.857 0.00 0.00 0.00 3.28
6152 6562 2.159296 ACCAAGAGCGACAAAACCAAAC 60.159 45.455 0.00 0.00 0.00 2.93
6153 6563 2.459934 CAAGAGCGACAAAACCAAACC 58.540 47.619 0.00 0.00 0.00 3.27
6154 6564 1.757682 AGAGCGACAAAACCAAACCA 58.242 45.000 0.00 0.00 0.00 3.67
6155 6565 2.096248 AGAGCGACAAAACCAAACCAA 58.904 42.857 0.00 0.00 0.00 3.67
6156 6566 2.159296 AGAGCGACAAAACCAAACCAAC 60.159 45.455 0.00 0.00 0.00 3.77
6157 6567 1.546476 AGCGACAAAACCAAACCAACA 59.454 42.857 0.00 0.00 0.00 3.33
6158 6568 2.028930 AGCGACAAAACCAAACCAACAA 60.029 40.909 0.00 0.00 0.00 2.83
6159 6569 2.933260 GCGACAAAACCAAACCAACAAT 59.067 40.909 0.00 0.00 0.00 2.71
6160 6570 4.113354 GCGACAAAACCAAACCAACAATA 58.887 39.130 0.00 0.00 0.00 1.90
6161 6571 4.567159 GCGACAAAACCAAACCAACAATAA 59.433 37.500 0.00 0.00 0.00 1.40
6162 6572 5.276631 GCGACAAAACCAAACCAACAATAAG 60.277 40.000 0.00 0.00 0.00 1.73
6163 6573 5.808030 CGACAAAACCAAACCAACAATAAGT 59.192 36.000 0.00 0.00 0.00 2.24
6164 6574 6.020201 CGACAAAACCAAACCAACAATAAGTC 60.020 38.462 0.00 0.00 0.00 3.01
6165 6575 6.110033 ACAAAACCAAACCAACAATAAGTCC 58.890 36.000 0.00 0.00 0.00 3.85
6166 6576 5.941555 AAACCAAACCAACAATAAGTCCA 57.058 34.783 0.00 0.00 0.00 4.02
6167 6577 5.941555 AACCAAACCAACAATAAGTCCAA 57.058 34.783 0.00 0.00 0.00 3.53
6168 6578 5.270893 ACCAAACCAACAATAAGTCCAAC 57.729 39.130 0.00 0.00 0.00 3.77
6169 6579 4.712337 ACCAAACCAACAATAAGTCCAACA 59.288 37.500 0.00 0.00 0.00 3.33
6170 6580 5.365314 ACCAAACCAACAATAAGTCCAACAT 59.635 36.000 0.00 0.00 0.00 2.71
6171 6581 5.925969 CCAAACCAACAATAAGTCCAACATC 59.074 40.000 0.00 0.00 0.00 3.06
6172 6582 5.371115 AACCAACAATAAGTCCAACATCG 57.629 39.130 0.00 0.00 0.00 3.84
6173 6583 3.190535 ACCAACAATAAGTCCAACATCGC 59.809 43.478 0.00 0.00 0.00 4.58
6174 6584 3.427503 CCAACAATAAGTCCAACATCGCC 60.428 47.826 0.00 0.00 0.00 5.54
6175 6585 3.066291 ACAATAAGTCCAACATCGCCA 57.934 42.857 0.00 0.00 0.00 5.69
6176 6586 3.417101 ACAATAAGTCCAACATCGCCAA 58.583 40.909 0.00 0.00 0.00 4.52
6177 6587 3.823873 ACAATAAGTCCAACATCGCCAAA 59.176 39.130 0.00 0.00 0.00 3.28
6178 6588 4.082787 ACAATAAGTCCAACATCGCCAAAG 60.083 41.667 0.00 0.00 0.00 2.77
6179 6589 0.598065 AAGTCCAACATCGCCAAAGC 59.402 50.000 0.00 0.00 0.00 3.51
6180 6590 1.212751 GTCCAACATCGCCAAAGCC 59.787 57.895 0.00 0.00 34.57 4.35
6181 6591 1.228398 TCCAACATCGCCAAAGCCA 60.228 52.632 0.00 0.00 34.57 4.75
6182 6592 0.825425 TCCAACATCGCCAAAGCCAA 60.825 50.000 0.00 0.00 34.57 4.52
6183 6593 0.667184 CCAACATCGCCAAAGCCAAC 60.667 55.000 0.00 0.00 34.57 3.77
6184 6594 0.314935 CAACATCGCCAAAGCCAACT 59.685 50.000 0.00 0.00 34.57 3.16
6185 6595 1.039856 AACATCGCCAAAGCCAACTT 58.960 45.000 0.00 0.00 37.90 2.66
6197 6607 2.801859 CCAACTTTGGGAACACCGT 58.198 52.632 0.00 0.00 44.70 4.83
6198 6608 0.383949 CCAACTTTGGGAACACCGTG 59.616 55.000 0.00 0.00 44.70 4.94
6199 6609 1.384525 CAACTTTGGGAACACCGTGA 58.615 50.000 5.28 0.00 44.64 4.35
6200 6610 1.333619 CAACTTTGGGAACACCGTGAG 59.666 52.381 5.28 0.00 44.64 3.51
6201 6611 0.818040 ACTTTGGGAACACCGTGAGC 60.818 55.000 5.28 0.00 44.64 4.26
6202 6612 1.841663 CTTTGGGAACACCGTGAGCG 61.842 60.000 5.28 0.00 44.64 5.03
6203 6613 2.313051 TTTGGGAACACCGTGAGCGA 62.313 55.000 5.28 0.00 44.64 4.93
6204 6614 2.432628 GGGAACACCGTGAGCGAG 60.433 66.667 5.28 0.00 41.33 5.03
6205 6615 2.338984 GGAACACCGTGAGCGAGT 59.661 61.111 5.28 0.00 41.33 4.18
6206 6616 1.582968 GGAACACCGTGAGCGAGTA 59.417 57.895 5.28 0.00 41.33 2.59
6207 6617 0.038892 GGAACACCGTGAGCGAGTAA 60.039 55.000 5.28 0.00 41.33 2.24
6208 6618 1.337821 GAACACCGTGAGCGAGTAAG 58.662 55.000 5.28 0.00 41.33 2.34
6209 6619 0.038526 AACACCGTGAGCGAGTAAGG 60.039 55.000 5.28 0.00 41.33 2.69
6210 6620 1.177256 ACACCGTGAGCGAGTAAGGT 61.177 55.000 5.28 0.00 41.33 3.50
6211 6621 0.732880 CACCGTGAGCGAGTAAGGTG 60.733 60.000 0.00 5.63 42.31 4.00
6212 6622 0.892358 ACCGTGAGCGAGTAAGGTGA 60.892 55.000 0.00 0.00 41.33 4.02
6213 6623 0.456221 CCGTGAGCGAGTAAGGTGAT 59.544 55.000 0.00 0.00 41.33 3.06
6214 6624 1.550065 CGTGAGCGAGTAAGGTGATG 58.450 55.000 0.00 0.00 41.33 3.07
6215 6625 1.281899 GTGAGCGAGTAAGGTGATGC 58.718 55.000 0.00 0.00 0.00 3.91
6216 6626 0.175760 TGAGCGAGTAAGGTGATGCC 59.824 55.000 0.00 0.00 37.58 4.40
6237 6647 4.820284 CTTCAAGAAGGAAGACAACACC 57.180 45.455 1.86 0.00 45.66 4.16
6238 6648 3.924114 TCAAGAAGGAAGACAACACCA 57.076 42.857 0.00 0.00 0.00 4.17
6239 6649 4.437682 TCAAGAAGGAAGACAACACCAT 57.562 40.909 0.00 0.00 0.00 3.55
6240 6650 4.792068 TCAAGAAGGAAGACAACACCATT 58.208 39.130 0.00 0.00 0.00 3.16
6241 6651 4.580167 TCAAGAAGGAAGACAACACCATTG 59.420 41.667 0.00 0.00 0.00 2.82
6242 6652 2.887152 AGAAGGAAGACAACACCATTGC 59.113 45.455 0.00 0.00 0.00 3.56
6243 6653 1.620822 AGGAAGACAACACCATTGCC 58.379 50.000 0.00 0.00 0.00 4.52
6244 6654 1.133513 AGGAAGACAACACCATTGCCA 60.134 47.619 0.00 0.00 0.00 4.92
6245 6655 1.895131 GGAAGACAACACCATTGCCAT 59.105 47.619 0.00 0.00 0.00 4.40
6246 6656 2.094545 GGAAGACAACACCATTGCCATC 60.095 50.000 0.00 0.00 0.00 3.51
6247 6657 1.549203 AGACAACACCATTGCCATCC 58.451 50.000 0.00 0.00 0.00 3.51
6248 6658 0.171007 GACAACACCATTGCCATCCG 59.829 55.000 0.00 0.00 0.00 4.18
6249 6659 1.250154 ACAACACCATTGCCATCCGG 61.250 55.000 0.00 0.00 0.00 5.14
6270 6680 2.203803 GGGGGATCCGGACCTAGG 60.204 72.222 6.12 7.41 0.00 3.02
6271 6681 2.203803 GGGGATCCGGACCTAGGG 60.204 72.222 14.81 0.00 0.00 3.53
6272 6682 2.613421 GGGATCCGGACCTAGGGT 59.387 66.667 14.81 0.00 39.44 4.34
6273 6683 1.074699 GGGATCCGGACCTAGGGTT 60.075 63.158 14.81 0.00 35.25 4.11
6274 6684 0.693430 GGGATCCGGACCTAGGGTTT 60.693 60.000 14.81 0.00 35.25 3.27
6275 6685 0.757512 GGATCCGGACCTAGGGTTTC 59.242 60.000 14.81 1.01 35.25 2.78
6276 6686 0.757512 GATCCGGACCTAGGGTTTCC 59.242 60.000 14.81 10.29 35.25 3.13
6277 6687 0.693430 ATCCGGACCTAGGGTTTCCC 60.693 60.000 14.81 5.14 45.90 3.97
6287 6697 3.388841 GGTTTCCCCTGAGCTCGA 58.611 61.111 9.64 0.00 0.00 4.04
6288 6698 1.677552 GGTTTCCCCTGAGCTCGAA 59.322 57.895 9.64 3.37 0.00 3.71
6289 6699 0.391793 GGTTTCCCCTGAGCTCGAAG 60.392 60.000 9.64 1.24 0.00 3.79
6290 6700 0.608640 GTTTCCCCTGAGCTCGAAGA 59.391 55.000 9.64 0.11 0.00 2.87
6301 6711 2.604686 TCGAAGAGGGGCACAGCT 60.605 61.111 0.00 0.00 0.00 4.24
6302 6712 2.435586 CGAAGAGGGGCACAGCTG 60.436 66.667 13.48 13.48 0.00 4.24
6303 6713 2.947532 CGAAGAGGGGCACAGCTGA 61.948 63.158 23.35 0.00 0.00 4.26
6304 6714 1.376466 GAAGAGGGGCACAGCTGAA 59.624 57.895 23.35 0.00 0.00 3.02
6305 6715 0.957888 GAAGAGGGGCACAGCTGAAC 60.958 60.000 23.35 11.57 0.00 3.18
6306 6716 2.738213 AAGAGGGGCACAGCTGAACG 62.738 60.000 23.35 9.47 0.00 3.95
6310 6720 2.980233 GGCACAGCTGAACGCCTT 60.980 61.111 27.85 2.52 41.50 4.35
6311 6721 2.253452 GCACAGCTGAACGCCTTG 59.747 61.111 23.35 7.34 40.39 3.61
6312 6722 2.253758 GCACAGCTGAACGCCTTGA 61.254 57.895 23.35 0.00 40.39 3.02
6313 6723 1.571460 CACAGCTGAACGCCTTGAC 59.429 57.895 23.35 0.00 40.39 3.18
6314 6724 1.146041 ACAGCTGAACGCCTTGACA 59.854 52.632 23.35 0.00 40.39 3.58
6315 6725 0.463654 ACAGCTGAACGCCTTGACAA 60.464 50.000 23.35 0.00 40.39 3.18
6316 6726 0.877071 CAGCTGAACGCCTTGACAAT 59.123 50.000 8.42 0.00 40.39 2.71
6317 6727 2.076100 CAGCTGAACGCCTTGACAATA 58.924 47.619 8.42 0.00 40.39 1.90
6318 6728 2.076863 AGCTGAACGCCTTGACAATAC 58.923 47.619 0.00 0.00 40.39 1.89
6319 6729 1.130561 GCTGAACGCCTTGACAATACC 59.869 52.381 0.00 0.00 0.00 2.73
6320 6730 2.699954 CTGAACGCCTTGACAATACCT 58.300 47.619 0.00 0.00 0.00 3.08
6321 6731 3.074412 CTGAACGCCTTGACAATACCTT 58.926 45.455 0.00 0.00 0.00 3.50
6322 6732 3.071479 TGAACGCCTTGACAATACCTTC 58.929 45.455 0.00 0.00 0.00 3.46
6323 6733 2.851263 ACGCCTTGACAATACCTTCA 57.149 45.000 0.00 0.00 0.00 3.02
6324 6734 3.134574 ACGCCTTGACAATACCTTCAA 57.865 42.857 0.00 0.00 0.00 2.69
6325 6735 3.074412 ACGCCTTGACAATACCTTCAAG 58.926 45.455 4.65 4.65 45.65 3.02
6339 6749 3.879932 CTTCAAGAAGGGAAACGACAC 57.120 47.619 1.86 0.00 34.87 3.67
6340 6750 2.249844 TCAAGAAGGGAAACGACACC 57.750 50.000 0.00 0.00 0.00 4.16
6341 6751 1.202722 TCAAGAAGGGAAACGACACCC 60.203 52.381 0.00 0.00 45.88 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 6.264744 CGTGTAAGAGAGGTTATCAATCCCTA 59.735 42.308 0.00 0.00 0.00 3.53
31 32 3.057969 TCCGACGTGTAAGAGAGGTTA 57.942 47.619 0.00 0.00 0.00 2.85
36 37 5.571784 AATTGTATCCGACGTGTAAGAGA 57.428 39.130 0.00 0.00 0.00 3.10
174 176 3.694566 CGGTATTTTCCCAAAGAGGAAGG 59.305 47.826 0.00 0.00 46.44 3.46
301 303 1.162698 GGGAAAAGCCGGTTGTACTC 58.837 55.000 1.90 0.00 37.63 2.59
311 313 1.895798 CCTCCTGAAAAGGGAAAAGCC 59.104 52.381 0.00 0.00 31.92 4.35
390 393 8.843262 GTTTTGCTAGGTTCTTTCTAGGTTTTA 58.157 33.333 0.00 0.00 35.85 1.52
452 457 1.342174 ACCAGCTGGAGCACAATTTTG 59.658 47.619 39.19 8.02 45.16 2.44
491 497 0.169230 GTGTGGTGCGTTGTTGTCAA 59.831 50.000 0.00 0.00 0.00 3.18
499 505 1.227409 TCATGTCGTGTGGTGCGTT 60.227 52.632 0.00 0.00 0.00 4.84
500 506 1.954146 GTCATGTCGTGTGGTGCGT 60.954 57.895 0.00 0.00 0.00 5.24
555 561 3.856267 GCGACTAACCGATGATTACTCCC 60.856 52.174 0.00 0.00 0.00 4.30
566 572 1.654954 GCAGAGGAGCGACTAACCGA 61.655 60.000 0.00 0.00 0.00 4.69
590 596 8.310122 ACCATAAATTAAGCTTGAACATGGAT 57.690 30.769 24.03 12.76 35.47 3.41
876 901 1.197430 AGAGACAGGTGAAGGCTGGG 61.197 60.000 0.00 0.00 0.00 4.45
906 931 1.077357 GGCGAGGGAGAGAGAGACA 60.077 63.158 0.00 0.00 0.00 3.41
926 951 2.335011 GGTGCTGGTTGCCGAAAC 59.665 61.111 0.00 0.00 42.00 2.78
992 1024 4.498520 AGTCGGACATGGCGAGCG 62.499 66.667 11.27 0.00 0.00 5.03
993 1025 2.583593 GAGTCGGACATGGCGAGC 60.584 66.667 11.27 0.00 0.00 5.03
1034 1066 1.305887 GGAAGGGGACGAGAAGGGA 60.306 63.158 0.00 0.00 0.00 4.20
1090 1123 1.266175 GAACGTCACACGAAGAGAGGA 59.734 52.381 2.48 0.00 46.05 3.71
1339 1372 1.062198 TCAGGCATGAGTATCCTGGGA 60.062 52.381 14.18 0.00 45.58 4.37
1340 1373 1.071385 GTCAGGCATGAGTATCCTGGG 59.929 57.143 0.00 0.00 45.58 4.45
1341 1374 1.764723 TGTCAGGCATGAGTATCCTGG 59.235 52.381 0.00 0.00 45.58 4.45
1342 1375 3.548745 TTGTCAGGCATGAGTATCCTG 57.451 47.619 0.00 9.39 46.60 3.86
1504 1557 2.664916 AGTTGCAACATGCTTAAAGCG 58.335 42.857 30.11 0.00 46.26 4.68
1523 1576 6.824305 ACCTCTGTAAATCAACAATCCAAG 57.176 37.500 0.00 0.00 0.00 3.61
1554 1607 2.416747 CGCCTTTGTCACATCTCTCAA 58.583 47.619 0.00 0.00 0.00 3.02
1726 1779 3.154710 GGTGAAAAGGGTCCAGTTAAGG 58.845 50.000 0.00 0.00 0.00 2.69
1792 1845 5.297029 CAGTGGGGAGCTTATTAGTTAAAGC 59.703 44.000 0.00 0.00 46.76 3.51
1862 1917 7.447238 TCAAACAATTAGGGACGAATTCTCTTT 59.553 33.333 3.52 0.00 41.50 2.52
1872 1927 5.880054 AAGACATCAAACAATTAGGGACG 57.120 39.130 0.00 0.00 0.00 4.79
1934 1990 7.014326 GTGTAACCAGAGTCCATACAGATATCA 59.986 40.741 5.32 0.00 0.00 2.15
1935 1991 7.014326 TGTGTAACCAGAGTCCATACAGATATC 59.986 40.741 0.00 0.00 34.36 1.63
1936 1992 6.839134 TGTGTAACCAGAGTCCATACAGATAT 59.161 38.462 0.00 0.00 34.36 1.63
1937 1993 6.192044 TGTGTAACCAGAGTCCATACAGATA 58.808 40.000 0.00 0.00 34.36 1.98
1938 1994 5.023452 TGTGTAACCAGAGTCCATACAGAT 58.977 41.667 0.00 0.00 34.36 2.90
1939 1995 4.412843 TGTGTAACCAGAGTCCATACAGA 58.587 43.478 0.00 0.00 34.36 3.41
2099 2161 4.903045 AAGAACTCGGGATCCTACAAAA 57.097 40.909 12.58 0.00 0.00 2.44
2227 2292 7.553044 AGCAACCCAACTCATATAAACTTCTAC 59.447 37.037 0.00 0.00 0.00 2.59
2698 2763 4.799428 GCTCTGACACGGAGAATAGTAAAC 59.201 45.833 11.17 0.00 39.05 2.01
2776 2841 5.477984 TGAAATGAGAAGGCAAAGCTAACAT 59.522 36.000 0.00 0.00 0.00 2.71
2777 2842 4.826733 TGAAATGAGAAGGCAAAGCTAACA 59.173 37.500 0.00 0.00 0.00 2.41
3541 3617 6.834959 ATGTAAGCTTATCATCAGTTCACG 57.165 37.500 9.88 0.00 0.00 4.35
4431 4507 5.441500 TCCCTCTGTTCACAAATGTAAACA 58.558 37.500 2.48 2.48 0.00 2.83
5265 5350 2.290464 TGTTCAACGGTTGGTACTTGG 58.710 47.619 19.91 0.00 0.00 3.61
5280 5365 2.627699 GTTTTGGAGGATGCCTTGTTCA 59.372 45.455 0.00 0.00 31.76 3.18
5395 5480 3.554934 ACAAGCAGGTGTTTCTCATGAA 58.445 40.909 0.00 0.00 0.00 2.57
5413 5498 8.940952 CAACTTAAAACAAAATTTCCCTGACAA 58.059 29.630 0.00 0.00 0.00 3.18
5429 5514 9.170584 GAAGCTGTGTAATTCTCAACTTAAAAC 57.829 33.333 0.00 0.00 29.78 2.43
5430 5515 8.349983 GGAAGCTGTGTAATTCTCAACTTAAAA 58.650 33.333 0.00 0.00 29.78 1.52
5482 5567 4.067896 CCGAGCAGCATATGAATAACCTT 58.932 43.478 6.97 0.00 0.00 3.50
5577 5971 0.036875 AAAGTACCTGGCAGTCTGGC 59.963 55.000 19.16 19.16 44.03 4.85
5578 5972 1.625818 AGAAAGTACCTGGCAGTCTGG 59.374 52.381 14.43 0.70 39.98 3.86
5579 5973 3.677424 GCTAGAAAGTACCTGGCAGTCTG 60.677 52.174 14.43 0.23 37.94 3.51
5580 5974 2.498078 GCTAGAAAGTACCTGGCAGTCT 59.502 50.000 14.43 10.73 37.94 3.24
5581 5975 2.498078 AGCTAGAAAGTACCTGGCAGTC 59.502 50.000 14.43 2.97 40.08 3.51
5582 5976 2.541466 AGCTAGAAAGTACCTGGCAGT 58.459 47.619 14.43 4.32 40.08 4.40
5583 5977 4.586841 AGATAGCTAGAAAGTACCTGGCAG 59.413 45.833 7.75 7.75 40.08 4.85
5699 6093 1.131126 CACGCTTGCTTACATTCCCTG 59.869 52.381 0.00 0.00 0.00 4.45
5748 6142 9.495572 ACAAAAACAACTTCCTAAACATTTCAA 57.504 25.926 0.00 0.00 0.00 2.69
5752 6146 8.460428 TCGTACAAAAACAACTTCCTAAACATT 58.540 29.630 0.00 0.00 0.00 2.71
5756 6150 8.266392 TCTTCGTACAAAAACAACTTCCTAAA 57.734 30.769 0.00 0.00 0.00 1.85
5827 6237 7.883311 CCCCAAACTTCTTCTTTCTTCAGTATA 59.117 37.037 0.00 0.00 0.00 1.47
5828 6238 6.717084 CCCCAAACTTCTTCTTTCTTCAGTAT 59.283 38.462 0.00 0.00 0.00 2.12
5852 6262 2.749621 ACCGAATTCTCTTTGATGTGCC 59.250 45.455 3.52 0.00 0.00 5.01
5904 6314 2.164422 GCAGATGTTAAGGAGGCAAACC 59.836 50.000 0.00 0.00 0.00 3.27
5938 6348 4.341935 TCTATTGCGCATTCACGAAAATG 58.658 39.130 12.75 9.26 39.22 2.32
5939 6349 4.614555 TCTATTGCGCATTCACGAAAAT 57.385 36.364 12.75 0.00 33.44 1.82
5940 6350 4.411993 TTCTATTGCGCATTCACGAAAA 57.588 36.364 12.75 0.00 33.44 2.29
5941 6351 4.614555 ATTCTATTGCGCATTCACGAAA 57.385 36.364 12.75 0.00 34.44 3.46
5942 6352 5.293324 ACTTATTCTATTGCGCATTCACGAA 59.707 36.000 12.75 11.83 34.06 3.85
5943 6353 4.808895 ACTTATTCTATTGCGCATTCACGA 59.191 37.500 12.75 2.83 34.06 4.35
5944 6354 5.083136 ACTTATTCTATTGCGCATTCACG 57.917 39.130 12.75 0.22 0.00 4.35
5945 6355 6.943981 TGTACTTATTCTATTGCGCATTCAC 58.056 36.000 12.75 0.00 0.00 3.18
5946 6356 6.761242 ACTGTACTTATTCTATTGCGCATTCA 59.239 34.615 12.75 0.00 0.00 2.57
5947 6357 7.065894 CACTGTACTTATTCTATTGCGCATTC 58.934 38.462 12.75 0.00 0.00 2.67
5948 6358 6.017934 CCACTGTACTTATTCTATTGCGCATT 60.018 38.462 12.75 11.14 0.00 3.56
5949 6359 5.466728 CCACTGTACTTATTCTATTGCGCAT 59.533 40.000 12.75 3.99 0.00 4.73
5950 6360 4.808895 CCACTGTACTTATTCTATTGCGCA 59.191 41.667 5.66 5.66 0.00 6.09
5951 6361 5.047847 TCCACTGTACTTATTCTATTGCGC 58.952 41.667 0.00 0.00 0.00 6.09
5952 6362 5.692204 CCTCCACTGTACTTATTCTATTGCG 59.308 44.000 0.00 0.00 0.00 4.85
5953 6363 6.583562 ACCTCCACTGTACTTATTCTATTGC 58.416 40.000 0.00 0.00 0.00 3.56
5954 6364 8.692710 TGTACCTCCACTGTACTTATTCTATTG 58.307 37.037 0.00 0.00 39.42 1.90
5955 6365 8.834004 TGTACCTCCACTGTACTTATTCTATT 57.166 34.615 0.00 0.00 39.42 1.73
5956 6366 8.693625 GTTGTACCTCCACTGTACTTATTCTAT 58.306 37.037 0.00 0.00 39.42 1.98
5957 6367 7.670979 TGTTGTACCTCCACTGTACTTATTCTA 59.329 37.037 0.00 0.00 39.42 2.10
5958 6368 6.495872 TGTTGTACCTCCACTGTACTTATTCT 59.504 38.462 0.00 0.00 39.42 2.40
5959 6369 6.589139 GTGTTGTACCTCCACTGTACTTATTC 59.411 42.308 0.00 0.00 39.42 1.75
5960 6370 6.042322 TGTGTTGTACCTCCACTGTACTTATT 59.958 38.462 0.00 0.00 39.42 1.40
5961 6371 5.541101 TGTGTTGTACCTCCACTGTACTTAT 59.459 40.000 0.00 0.00 39.42 1.73
5962 6372 4.894705 TGTGTTGTACCTCCACTGTACTTA 59.105 41.667 0.00 0.00 39.42 2.24
5963 6373 3.707611 TGTGTTGTACCTCCACTGTACTT 59.292 43.478 0.00 0.00 39.42 2.24
5964 6374 3.069158 GTGTGTTGTACCTCCACTGTACT 59.931 47.826 0.00 0.00 39.42 2.73
5965 6375 3.181473 TGTGTGTTGTACCTCCACTGTAC 60.181 47.826 7.79 0.00 39.19 2.90
5966 6376 3.032459 TGTGTGTTGTACCTCCACTGTA 58.968 45.455 7.79 0.00 0.00 2.74
5967 6377 1.834896 TGTGTGTTGTACCTCCACTGT 59.165 47.619 7.79 0.00 0.00 3.55
5968 6378 2.613026 TGTGTGTTGTACCTCCACTG 57.387 50.000 7.79 0.00 0.00 3.66
5969 6379 3.135712 TCATTGTGTGTTGTACCTCCACT 59.864 43.478 7.79 0.00 0.00 4.00
5970 6380 3.472652 TCATTGTGTGTTGTACCTCCAC 58.527 45.455 0.00 0.00 0.00 4.02
5971 6381 3.847671 TCATTGTGTGTTGTACCTCCA 57.152 42.857 0.00 0.00 0.00 3.86
5972 6382 5.508200 TTTTCATTGTGTGTTGTACCTCC 57.492 39.130 0.00 0.00 0.00 4.30
5973 6383 8.094798 TCTATTTTCATTGTGTGTTGTACCTC 57.905 34.615 0.00 0.00 0.00 3.85
5974 6384 8.458573 TTCTATTTTCATTGTGTGTTGTACCT 57.541 30.769 0.00 0.00 0.00 3.08
6000 6410 9.955208 CCGTGTGTTATATCTACATTGTACTTA 57.045 33.333 0.00 0.00 0.00 2.24
6001 6411 7.437267 GCCGTGTGTTATATCTACATTGTACTT 59.563 37.037 0.00 0.00 0.00 2.24
6002 6412 6.921857 GCCGTGTGTTATATCTACATTGTACT 59.078 38.462 0.00 0.00 0.00 2.73
6003 6413 6.698329 TGCCGTGTGTTATATCTACATTGTAC 59.302 38.462 0.00 0.00 0.00 2.90
6004 6414 6.698329 GTGCCGTGTGTTATATCTACATTGTA 59.302 38.462 0.00 0.00 0.00 2.41
6005 6415 5.522460 GTGCCGTGTGTTATATCTACATTGT 59.478 40.000 0.00 0.00 0.00 2.71
6006 6416 5.522097 TGTGCCGTGTGTTATATCTACATTG 59.478 40.000 0.00 0.00 0.00 2.82
6007 6417 5.666462 TGTGCCGTGTGTTATATCTACATT 58.334 37.500 0.00 0.00 0.00 2.71
6008 6418 5.270893 TGTGCCGTGTGTTATATCTACAT 57.729 39.130 0.00 0.00 0.00 2.29
6009 6419 4.722361 TGTGCCGTGTGTTATATCTACA 57.278 40.909 0.00 0.00 0.00 2.74
6010 6420 5.349270 TGTTTGTGCCGTGTGTTATATCTAC 59.651 40.000 0.00 0.00 0.00 2.59
6011 6421 5.349270 GTGTTTGTGCCGTGTGTTATATCTA 59.651 40.000 0.00 0.00 0.00 1.98
6012 6422 4.153475 GTGTTTGTGCCGTGTGTTATATCT 59.847 41.667 0.00 0.00 0.00 1.98
6013 6423 4.083749 TGTGTTTGTGCCGTGTGTTATATC 60.084 41.667 0.00 0.00 0.00 1.63
6014 6424 3.815962 TGTGTTTGTGCCGTGTGTTATAT 59.184 39.130 0.00 0.00 0.00 0.86
6015 6425 3.203716 TGTGTTTGTGCCGTGTGTTATA 58.796 40.909 0.00 0.00 0.00 0.98
6016 6426 2.017782 TGTGTTTGTGCCGTGTGTTAT 58.982 42.857 0.00 0.00 0.00 1.89
6017 6427 1.398739 CTGTGTTTGTGCCGTGTGTTA 59.601 47.619 0.00 0.00 0.00 2.41
6018 6428 0.170116 CTGTGTTTGTGCCGTGTGTT 59.830 50.000 0.00 0.00 0.00 3.32
6019 6429 1.653094 CCTGTGTTTGTGCCGTGTGT 61.653 55.000 0.00 0.00 0.00 3.72
6020 6430 1.063972 CCTGTGTTTGTGCCGTGTG 59.936 57.895 0.00 0.00 0.00 3.82
6021 6431 2.770589 GCCTGTGTTTGTGCCGTGT 61.771 57.895 0.00 0.00 0.00 4.49
6022 6432 2.026014 GCCTGTGTTTGTGCCGTG 59.974 61.111 0.00 0.00 0.00 4.94
6023 6433 2.439338 TGCCTGTGTTTGTGCCGT 60.439 55.556 0.00 0.00 0.00 5.68
6024 6434 2.332514 CTGCCTGTGTTTGTGCCG 59.667 61.111 0.00 0.00 0.00 5.69
6025 6435 2.730094 CCTGCCTGTGTTTGTGCC 59.270 61.111 0.00 0.00 0.00 5.01
6026 6436 2.028043 GCCTGCCTGTGTTTGTGC 59.972 61.111 0.00 0.00 0.00 4.57
6027 6437 2.121564 CTCGCCTGCCTGTGTTTGTG 62.122 60.000 0.00 0.00 0.00 3.33
6028 6438 1.893808 CTCGCCTGCCTGTGTTTGT 60.894 57.895 0.00 0.00 0.00 2.83
6029 6439 1.165907 TTCTCGCCTGCCTGTGTTTG 61.166 55.000 0.00 0.00 0.00 2.93
6030 6440 1.148273 TTCTCGCCTGCCTGTGTTT 59.852 52.632 0.00 0.00 0.00 2.83
6031 6441 1.598130 GTTCTCGCCTGCCTGTGTT 60.598 57.895 0.00 0.00 0.00 3.32
6032 6442 2.031163 GTTCTCGCCTGCCTGTGT 59.969 61.111 0.00 0.00 0.00 3.72
6033 6443 1.572085 CTTGTTCTCGCCTGCCTGTG 61.572 60.000 0.00 0.00 0.00 3.66
6034 6444 1.302033 CTTGTTCTCGCCTGCCTGT 60.302 57.895 0.00 0.00 0.00 4.00
6035 6445 2.037136 CCTTGTTCTCGCCTGCCTG 61.037 63.158 0.00 0.00 0.00 4.85
6036 6446 2.348998 CCTTGTTCTCGCCTGCCT 59.651 61.111 0.00 0.00 0.00 4.75
6037 6447 2.032681 ACCTTGTTCTCGCCTGCC 59.967 61.111 0.00 0.00 0.00 4.85
6038 6448 2.970974 GCACCTTGTTCTCGCCTGC 61.971 63.158 0.00 0.00 0.00 4.85
6039 6449 2.671177 CGCACCTTGTTCTCGCCTG 61.671 63.158 0.00 0.00 0.00 4.85
6040 6450 2.357517 CGCACCTTGTTCTCGCCT 60.358 61.111 0.00 0.00 0.00 5.52
6041 6451 4.090057 GCGCACCTTGTTCTCGCC 62.090 66.667 0.30 0.00 39.91 5.54
6042 6452 4.430423 CGCGCACCTTGTTCTCGC 62.430 66.667 8.75 0.00 42.05 5.03
6043 6453 3.777925 CCGCGCACCTTGTTCTCG 61.778 66.667 8.75 0.00 0.00 4.04
6044 6454 2.357034 TCCGCGCACCTTGTTCTC 60.357 61.111 8.75 0.00 0.00 2.87
6045 6455 2.357517 CTCCGCGCACCTTGTTCT 60.358 61.111 8.75 0.00 0.00 3.01
6046 6456 4.090057 GCTCCGCGCACCTTGTTC 62.090 66.667 8.75 0.00 38.92 3.18
6047 6457 4.927782 TGCTCCGCGCACCTTGTT 62.928 61.111 8.75 0.00 45.47 2.83
6055 6465 2.233007 CTTGTCTCTTTGCTCCGCGC 62.233 60.000 0.00 0.00 39.77 6.86
6056 6466 1.630244 CCTTGTCTCTTTGCTCCGCG 61.630 60.000 0.00 0.00 0.00 6.46
6057 6467 1.301677 CCCTTGTCTCTTTGCTCCGC 61.302 60.000 0.00 0.00 0.00 5.54
6058 6468 0.321671 TCCCTTGTCTCTTTGCTCCG 59.678 55.000 0.00 0.00 0.00 4.63
6059 6469 2.363683 CATCCCTTGTCTCTTTGCTCC 58.636 52.381 0.00 0.00 0.00 4.70
6060 6470 1.742268 GCATCCCTTGTCTCTTTGCTC 59.258 52.381 0.00 0.00 0.00 4.26
6061 6471 1.353694 AGCATCCCTTGTCTCTTTGCT 59.646 47.619 0.00 0.00 34.34 3.91
6062 6472 1.831580 AGCATCCCTTGTCTCTTTGC 58.168 50.000 0.00 0.00 0.00 3.68
6063 6473 3.844577 CAAGCATCCCTTGTCTCTTTG 57.155 47.619 0.00 0.00 44.74 2.77
6072 6482 2.917897 TTCGGGCCAAGCATCCCTT 61.918 57.895 4.39 0.00 40.41 3.95
6073 6483 3.338250 TTCGGGCCAAGCATCCCT 61.338 61.111 4.39 0.00 40.41 4.20
6074 6484 3.140814 GTTCGGGCCAAGCATCCC 61.141 66.667 4.39 0.00 39.17 3.85
6075 6485 2.361104 TGTTCGGGCCAAGCATCC 60.361 61.111 4.39 0.00 0.00 3.51
6076 6486 0.960364 TTCTGTTCGGGCCAAGCATC 60.960 55.000 4.39 0.00 0.00 3.91
6077 6487 0.539438 TTTCTGTTCGGGCCAAGCAT 60.539 50.000 4.39 0.00 0.00 3.79
6078 6488 0.539438 ATTTCTGTTCGGGCCAAGCA 60.539 50.000 4.39 0.00 0.00 3.91
6079 6489 1.132453 GTATTTCTGTTCGGGCCAAGC 59.868 52.381 4.39 0.00 0.00 4.01
6080 6490 2.432444 TGTATTTCTGTTCGGGCCAAG 58.568 47.619 4.39 0.00 0.00 3.61
6081 6491 2.554893 GTTGTATTTCTGTTCGGGCCAA 59.445 45.455 4.39 0.00 0.00 4.52
6082 6492 2.156098 GTTGTATTTCTGTTCGGGCCA 58.844 47.619 4.39 0.00 0.00 5.36
6083 6493 2.095415 GTGTTGTATTTCTGTTCGGGCC 60.095 50.000 0.00 0.00 0.00 5.80
6084 6494 2.550606 TGTGTTGTATTTCTGTTCGGGC 59.449 45.455 0.00 0.00 0.00 6.13
6085 6495 4.274950 AGTTGTGTTGTATTTCTGTTCGGG 59.725 41.667 0.00 0.00 0.00 5.14
6086 6496 5.418310 AGTTGTGTTGTATTTCTGTTCGG 57.582 39.130 0.00 0.00 0.00 4.30
6087 6497 7.627340 AGTTAGTTGTGTTGTATTTCTGTTCG 58.373 34.615 0.00 0.00 0.00 3.95
6098 6508 8.967664 TGGTAGATTTTAGTTAGTTGTGTTGT 57.032 30.769 0.00 0.00 0.00 3.32
6099 6509 9.878599 CTTGGTAGATTTTAGTTAGTTGTGTTG 57.121 33.333 0.00 0.00 0.00 3.33
6100 6510 8.565416 GCTTGGTAGATTTTAGTTAGTTGTGTT 58.435 33.333 0.00 0.00 0.00 3.32
6101 6511 7.174426 GGCTTGGTAGATTTTAGTTAGTTGTGT 59.826 37.037 0.00 0.00 0.00 3.72
6102 6512 7.390718 AGGCTTGGTAGATTTTAGTTAGTTGTG 59.609 37.037 0.00 0.00 0.00 3.33
6103 6513 7.390718 CAGGCTTGGTAGATTTTAGTTAGTTGT 59.609 37.037 0.00 0.00 0.00 3.32
6104 6514 7.606456 TCAGGCTTGGTAGATTTTAGTTAGTTG 59.394 37.037 0.00 0.00 0.00 3.16
6105 6515 7.686434 TCAGGCTTGGTAGATTTTAGTTAGTT 58.314 34.615 0.00 0.00 0.00 2.24
6106 6516 7.253905 TCAGGCTTGGTAGATTTTAGTTAGT 57.746 36.000 0.00 0.00 0.00 2.24
6107 6517 7.065923 GGTTCAGGCTTGGTAGATTTTAGTTAG 59.934 40.741 0.00 0.00 0.00 2.34
6108 6518 6.882678 GGTTCAGGCTTGGTAGATTTTAGTTA 59.117 38.462 0.00 0.00 0.00 2.24
6109 6519 5.710567 GGTTCAGGCTTGGTAGATTTTAGTT 59.289 40.000 0.00 0.00 0.00 2.24
6110 6520 5.222048 TGGTTCAGGCTTGGTAGATTTTAGT 60.222 40.000 0.00 0.00 0.00 2.24
6111 6521 5.253330 TGGTTCAGGCTTGGTAGATTTTAG 58.747 41.667 0.00 0.00 0.00 1.85
6112 6522 5.249780 TGGTTCAGGCTTGGTAGATTTTA 57.750 39.130 0.00 0.00 0.00 1.52
6113 6523 4.112634 TGGTTCAGGCTTGGTAGATTTT 57.887 40.909 0.00 0.00 0.00 1.82
6114 6524 3.806949 TGGTTCAGGCTTGGTAGATTT 57.193 42.857 0.00 0.00 0.00 2.17
6115 6525 3.330701 TCTTGGTTCAGGCTTGGTAGATT 59.669 43.478 0.00 0.00 0.00 2.40
6116 6526 2.912956 TCTTGGTTCAGGCTTGGTAGAT 59.087 45.455 0.00 0.00 0.00 1.98
6117 6527 2.303022 CTCTTGGTTCAGGCTTGGTAGA 59.697 50.000 0.00 0.00 0.00 2.59
6118 6528 2.704572 CTCTTGGTTCAGGCTTGGTAG 58.295 52.381 0.00 0.00 0.00 3.18
6119 6529 1.271379 GCTCTTGGTTCAGGCTTGGTA 60.271 52.381 0.00 0.00 0.00 3.25
6120 6530 0.538287 GCTCTTGGTTCAGGCTTGGT 60.538 55.000 0.00 0.00 0.00 3.67
6121 6531 1.580845 CGCTCTTGGTTCAGGCTTGG 61.581 60.000 0.00 0.00 0.00 3.61
6122 6532 0.603707 TCGCTCTTGGTTCAGGCTTG 60.604 55.000 0.00 0.00 0.00 4.01
6123 6533 0.603975 GTCGCTCTTGGTTCAGGCTT 60.604 55.000 0.00 0.00 0.00 4.35
6124 6534 1.004440 GTCGCTCTTGGTTCAGGCT 60.004 57.895 0.00 0.00 0.00 4.58
6125 6535 0.884704 TTGTCGCTCTTGGTTCAGGC 60.885 55.000 0.00 0.00 0.00 4.85
6126 6536 1.593196 TTTGTCGCTCTTGGTTCAGG 58.407 50.000 0.00 0.00 0.00 3.86
6127 6537 2.287009 GGTTTTGTCGCTCTTGGTTCAG 60.287 50.000 0.00 0.00 0.00 3.02
6128 6538 1.673920 GGTTTTGTCGCTCTTGGTTCA 59.326 47.619 0.00 0.00 0.00 3.18
6129 6539 1.673920 TGGTTTTGTCGCTCTTGGTTC 59.326 47.619 0.00 0.00 0.00 3.62
6130 6540 1.757682 TGGTTTTGTCGCTCTTGGTT 58.242 45.000 0.00 0.00 0.00 3.67
6131 6541 1.757682 TTGGTTTTGTCGCTCTTGGT 58.242 45.000 0.00 0.00 0.00 3.67
6132 6542 2.459934 GTTTGGTTTTGTCGCTCTTGG 58.540 47.619 0.00 0.00 0.00 3.61
6133 6543 2.159310 TGGTTTGGTTTTGTCGCTCTTG 60.159 45.455 0.00 0.00 0.00 3.02
6134 6544 2.096248 TGGTTTGGTTTTGTCGCTCTT 58.904 42.857 0.00 0.00 0.00 2.85
6135 6545 1.757682 TGGTTTGGTTTTGTCGCTCT 58.242 45.000 0.00 0.00 0.00 4.09
6136 6546 2.190161 GTTGGTTTGGTTTTGTCGCTC 58.810 47.619 0.00 0.00 0.00 5.03
6137 6547 1.546476 TGTTGGTTTGGTTTTGTCGCT 59.454 42.857 0.00 0.00 0.00 4.93
6138 6548 1.997669 TGTTGGTTTGGTTTTGTCGC 58.002 45.000 0.00 0.00 0.00 5.19
6139 6549 5.808030 ACTTATTGTTGGTTTGGTTTTGTCG 59.192 36.000 0.00 0.00 0.00 4.35
6140 6550 6.256975 GGACTTATTGTTGGTTTGGTTTTGTC 59.743 38.462 0.00 0.00 0.00 3.18
6141 6551 6.110033 GGACTTATTGTTGGTTTGGTTTTGT 58.890 36.000 0.00 0.00 0.00 2.83
6142 6552 6.109359 TGGACTTATTGTTGGTTTGGTTTTG 58.891 36.000 0.00 0.00 0.00 2.44
6143 6553 6.301169 TGGACTTATTGTTGGTTTGGTTTT 57.699 33.333 0.00 0.00 0.00 2.43
6144 6554 5.941555 TGGACTTATTGTTGGTTTGGTTT 57.058 34.783 0.00 0.00 0.00 3.27
6145 6555 5.187967 TGTTGGACTTATTGTTGGTTTGGTT 59.812 36.000 0.00 0.00 0.00 3.67
6146 6556 4.712337 TGTTGGACTTATTGTTGGTTTGGT 59.288 37.500 0.00 0.00 0.00 3.67
6147 6557 5.269505 TGTTGGACTTATTGTTGGTTTGG 57.730 39.130 0.00 0.00 0.00 3.28
6148 6558 5.629020 CGATGTTGGACTTATTGTTGGTTTG 59.371 40.000 0.00 0.00 0.00 2.93
6149 6559 5.768317 CGATGTTGGACTTATTGTTGGTTT 58.232 37.500 0.00 0.00 0.00 3.27
6150 6560 4.320935 GCGATGTTGGACTTATTGTTGGTT 60.321 41.667 0.00 0.00 0.00 3.67
6151 6561 3.190535 GCGATGTTGGACTTATTGTTGGT 59.809 43.478 0.00 0.00 0.00 3.67
6152 6562 3.427503 GGCGATGTTGGACTTATTGTTGG 60.428 47.826 0.00 0.00 0.00 3.77
6153 6563 3.190327 TGGCGATGTTGGACTTATTGTTG 59.810 43.478 0.00 0.00 0.00 3.33
6154 6564 3.417101 TGGCGATGTTGGACTTATTGTT 58.583 40.909 0.00 0.00 0.00 2.83
6155 6565 3.066291 TGGCGATGTTGGACTTATTGT 57.934 42.857 0.00 0.00 0.00 2.71
6156 6566 4.414852 CTTTGGCGATGTTGGACTTATTG 58.585 43.478 0.00 0.00 0.00 1.90
6157 6567 3.119495 GCTTTGGCGATGTTGGACTTATT 60.119 43.478 0.00 0.00 0.00 1.40
6158 6568 2.423538 GCTTTGGCGATGTTGGACTTAT 59.576 45.455 0.00 0.00 0.00 1.73
6159 6569 1.810151 GCTTTGGCGATGTTGGACTTA 59.190 47.619 0.00 0.00 0.00 2.24
6160 6570 0.598065 GCTTTGGCGATGTTGGACTT 59.402 50.000 0.00 0.00 0.00 3.01
6161 6571 1.244019 GGCTTTGGCGATGTTGGACT 61.244 55.000 0.00 0.00 39.81 3.85
6162 6572 1.212751 GGCTTTGGCGATGTTGGAC 59.787 57.895 0.00 0.00 39.81 4.02
6163 6573 0.825425 TTGGCTTTGGCGATGTTGGA 60.825 50.000 0.00 0.00 39.81 3.53
6164 6574 0.667184 GTTGGCTTTGGCGATGTTGG 60.667 55.000 0.00 0.00 39.81 3.77
6165 6575 0.314935 AGTTGGCTTTGGCGATGTTG 59.685 50.000 0.00 0.00 39.81 3.33
6166 6576 1.039856 AAGTTGGCTTTGGCGATGTT 58.960 45.000 0.00 0.00 39.81 2.71
6167 6577 1.039856 AAAGTTGGCTTTGGCGATGT 58.960 45.000 0.00 0.00 42.78 3.06
6168 6578 3.892200 AAAGTTGGCTTTGGCGATG 57.108 47.368 0.00 0.00 42.78 3.84
6180 6590 1.333619 CTCACGGTGTTCCCAAAGTTG 59.666 52.381 8.17 0.00 0.00 3.16
6181 6591 1.675552 CTCACGGTGTTCCCAAAGTT 58.324 50.000 8.17 0.00 0.00 2.66
6182 6592 0.818040 GCTCACGGTGTTCCCAAAGT 60.818 55.000 8.17 0.00 0.00 2.66
6183 6593 1.841663 CGCTCACGGTGTTCCCAAAG 61.842 60.000 8.17 0.00 34.97 2.77
6184 6594 1.890041 CGCTCACGGTGTTCCCAAA 60.890 57.895 8.17 0.00 34.97 3.28
6185 6595 2.280524 CGCTCACGGTGTTCCCAA 60.281 61.111 8.17 0.00 34.97 4.12
6186 6596 3.220999 CTCGCTCACGGTGTTCCCA 62.221 63.158 8.17 0.00 40.63 4.37
6187 6597 1.870055 TACTCGCTCACGGTGTTCCC 61.870 60.000 8.17 0.00 40.63 3.97
6188 6598 0.038892 TTACTCGCTCACGGTGTTCC 60.039 55.000 8.17 0.00 40.63 3.62
6189 6599 1.337821 CTTACTCGCTCACGGTGTTC 58.662 55.000 8.17 0.50 40.63 3.18
6190 6600 0.038526 CCTTACTCGCTCACGGTGTT 60.039 55.000 8.17 0.00 40.63 3.32
6191 6601 1.177256 ACCTTACTCGCTCACGGTGT 61.177 55.000 8.17 0.00 40.63 4.16
6192 6602 0.732880 CACCTTACTCGCTCACGGTG 60.733 60.000 0.56 0.56 40.63 4.94
6193 6603 0.892358 TCACCTTACTCGCTCACGGT 60.892 55.000 0.00 0.00 40.63 4.83
6194 6604 0.456221 ATCACCTTACTCGCTCACGG 59.544 55.000 0.00 0.00 40.63 4.94
6195 6605 1.550065 CATCACCTTACTCGCTCACG 58.450 55.000 0.00 0.00 42.01 4.35
6196 6606 1.281899 GCATCACCTTACTCGCTCAC 58.718 55.000 0.00 0.00 0.00 3.51
6197 6607 0.175760 GGCATCACCTTACTCGCTCA 59.824 55.000 0.00 0.00 34.51 4.26
6198 6608 2.979130 GGCATCACCTTACTCGCTC 58.021 57.895 0.00 0.00 34.51 5.03
6208 6618 2.496899 TCCTTCTTGAAGGCATCACC 57.503 50.000 21.16 0.00 37.92 4.02
6209 6619 3.438434 GTCTTCCTTCTTGAAGGCATCAC 59.562 47.826 21.16 12.36 44.49 3.06
6210 6620 3.679389 GTCTTCCTTCTTGAAGGCATCA 58.321 45.455 21.16 4.78 44.49 3.07
6214 6624 3.003793 GTGTTGTCTTCCTTCTTGAAGGC 59.996 47.826 21.16 10.17 45.16 4.35
6215 6625 3.565902 GGTGTTGTCTTCCTTCTTGAAGG 59.434 47.826 20.21 20.21 41.67 3.46
6216 6626 4.199310 TGGTGTTGTCTTCCTTCTTGAAG 58.801 43.478 3.55 3.55 42.52 3.02
6217 6627 4.229304 TGGTGTTGTCTTCCTTCTTGAA 57.771 40.909 0.00 0.00 0.00 2.69
6218 6628 3.924114 TGGTGTTGTCTTCCTTCTTGA 57.076 42.857 0.00 0.00 0.00 3.02
6219 6629 4.794003 GCAATGGTGTTGTCTTCCTTCTTG 60.794 45.833 0.00 0.00 0.00 3.02
6220 6630 3.319122 GCAATGGTGTTGTCTTCCTTCTT 59.681 43.478 0.00 0.00 0.00 2.52
6221 6631 2.887152 GCAATGGTGTTGTCTTCCTTCT 59.113 45.455 0.00 0.00 0.00 2.85
6222 6632 2.029918 GGCAATGGTGTTGTCTTCCTTC 60.030 50.000 0.00 0.00 0.00 3.46
6223 6633 1.963515 GGCAATGGTGTTGTCTTCCTT 59.036 47.619 0.00 0.00 0.00 3.36
6224 6634 1.133513 TGGCAATGGTGTTGTCTTCCT 60.134 47.619 0.00 0.00 0.00 3.36
6225 6635 1.327303 TGGCAATGGTGTTGTCTTCC 58.673 50.000 0.00 0.00 0.00 3.46
6226 6636 2.094545 GGATGGCAATGGTGTTGTCTTC 60.095 50.000 0.00 1.13 0.00 2.87
6227 6637 1.895131 GGATGGCAATGGTGTTGTCTT 59.105 47.619 0.00 0.00 0.00 3.01
6228 6638 1.549203 GGATGGCAATGGTGTTGTCT 58.451 50.000 0.00 0.00 0.00 3.41
6229 6639 0.171007 CGGATGGCAATGGTGTTGTC 59.829 55.000 0.00 0.00 0.00 3.18
6230 6640 1.250154 CCGGATGGCAATGGTGTTGT 61.250 55.000 0.00 0.00 0.00 3.32
6231 6641 1.512230 CCGGATGGCAATGGTGTTG 59.488 57.895 0.00 0.00 0.00 3.33
6232 6642 4.016838 CCGGATGGCAATGGTGTT 57.983 55.556 0.00 0.00 0.00 3.32
6253 6663 2.203803 CCTAGGTCCGGATCCCCC 60.204 72.222 12.23 5.81 0.00 5.40
6254 6664 2.203803 CCCTAGGTCCGGATCCCC 60.204 72.222 12.23 6.24 0.00 4.81
6255 6665 0.693430 AAACCCTAGGTCCGGATCCC 60.693 60.000 12.23 7.11 33.12 3.85
6256 6666 0.757512 GAAACCCTAGGTCCGGATCC 59.242 60.000 12.23 12.95 33.12 3.36
6257 6667 0.757512 GGAAACCCTAGGTCCGGATC 59.242 60.000 7.81 7.19 33.12 3.36
6258 6668 2.926539 GGAAACCCTAGGTCCGGAT 58.073 57.895 7.81 0.00 33.12 4.18
6259 6669 4.466898 GGAAACCCTAGGTCCGGA 57.533 61.111 8.29 0.00 33.12 5.14
6271 6681 0.608640 TCTTCGAGCTCAGGGGAAAC 59.391 55.000 15.40 0.00 0.00 2.78
6272 6682 0.898320 CTCTTCGAGCTCAGGGGAAA 59.102 55.000 15.40 0.00 0.00 3.13
6273 6683 0.972983 CCTCTTCGAGCTCAGGGGAA 60.973 60.000 13.68 7.73 31.27 3.97
6274 6684 1.380515 CCTCTTCGAGCTCAGGGGA 60.381 63.158 13.68 0.00 31.27 4.81
6275 6685 2.430610 CCCTCTTCGAGCTCAGGGG 61.431 68.421 23.52 18.30 41.96 4.79
6276 6686 2.430610 CCCCTCTTCGAGCTCAGGG 61.431 68.421 24.05 24.05 44.92 4.45
6277 6687 3.087666 GCCCCTCTTCGAGCTCAGG 62.088 68.421 15.40 12.51 0.00 3.86
6278 6688 2.354401 TGCCCCTCTTCGAGCTCAG 61.354 63.158 15.40 4.49 0.00 3.35
6279 6689 2.283894 TGCCCCTCTTCGAGCTCA 60.284 61.111 15.40 0.00 0.00 4.26
6280 6690 2.185608 GTGCCCCTCTTCGAGCTC 59.814 66.667 2.73 2.73 0.00 4.09
6281 6691 2.604686 TGTGCCCCTCTTCGAGCT 60.605 61.111 0.00 0.00 0.00 4.09
6282 6692 2.125350 CTGTGCCCCTCTTCGAGC 60.125 66.667 0.00 0.00 0.00 5.03
6283 6693 2.125350 GCTGTGCCCCTCTTCGAG 60.125 66.667 0.00 0.00 0.00 4.04
6284 6694 2.604686 AGCTGTGCCCCTCTTCGA 60.605 61.111 0.00 0.00 0.00 3.71
6285 6695 2.435586 CAGCTGTGCCCCTCTTCG 60.436 66.667 5.25 0.00 0.00 3.79
6286 6696 0.957888 GTTCAGCTGTGCCCCTCTTC 60.958 60.000 14.67 0.00 0.00 2.87
6287 6697 1.073897 GTTCAGCTGTGCCCCTCTT 59.926 57.895 14.67 0.00 0.00 2.85
6288 6698 2.753029 GTTCAGCTGTGCCCCTCT 59.247 61.111 14.67 0.00 0.00 3.69
6289 6699 2.743928 CGTTCAGCTGTGCCCCTC 60.744 66.667 14.67 0.00 0.00 4.30
6300 6710 2.699954 AGGTATTGTCAAGGCGTTCAG 58.300 47.619 0.00 0.00 0.00 3.02
6301 6711 2.851263 AGGTATTGTCAAGGCGTTCA 57.149 45.000 0.00 0.00 0.00 3.18
6302 6712 3.071479 TGAAGGTATTGTCAAGGCGTTC 58.929 45.455 13.28 13.28 0.00 3.95
6303 6713 3.134574 TGAAGGTATTGTCAAGGCGTT 57.865 42.857 0.00 0.00 0.00 4.84
6304 6714 2.851263 TGAAGGTATTGTCAAGGCGT 57.149 45.000 0.00 0.00 0.00 5.68
6305 6715 3.747099 CTTGAAGGTATTGTCAAGGCG 57.253 47.619 5.66 0.00 44.59 5.52
6309 6719 5.576563 TCCCTTCTTGAAGGTATTGTCAA 57.423 39.130 23.12 0.00 38.28 3.18
6310 6720 5.576563 TTCCCTTCTTGAAGGTATTGTCA 57.423 39.130 23.12 0.00 38.28 3.58
6311 6721 5.106673 CGTTTCCCTTCTTGAAGGTATTGTC 60.107 44.000 23.12 10.65 38.28 3.18
6312 6722 4.760204 CGTTTCCCTTCTTGAAGGTATTGT 59.240 41.667 23.12 0.00 38.28 2.71
6313 6723 5.001232 TCGTTTCCCTTCTTGAAGGTATTG 58.999 41.667 23.12 11.35 38.28 1.90
6314 6724 5.001874 GTCGTTTCCCTTCTTGAAGGTATT 58.998 41.667 23.12 0.00 38.28 1.89
6315 6725 4.041198 TGTCGTTTCCCTTCTTGAAGGTAT 59.959 41.667 23.12 0.00 38.28 2.73
6316 6726 3.388676 TGTCGTTTCCCTTCTTGAAGGTA 59.611 43.478 23.12 9.25 38.28 3.08
6317 6727 2.171870 TGTCGTTTCCCTTCTTGAAGGT 59.828 45.455 23.12 0.00 38.28 3.50
6318 6728 2.548480 GTGTCGTTTCCCTTCTTGAAGG 59.452 50.000 19.53 19.53 39.68 3.46
6319 6729 2.548480 GGTGTCGTTTCCCTTCTTGAAG 59.452 50.000 3.55 3.55 0.00 3.02
6320 6730 2.567985 GGTGTCGTTTCCCTTCTTGAA 58.432 47.619 0.00 0.00 0.00 2.69
6321 6731 1.202722 GGGTGTCGTTTCCCTTCTTGA 60.203 52.381 0.00 0.00 40.48 3.02
6322 6732 1.235724 GGGTGTCGTTTCCCTTCTTG 58.764 55.000 0.00 0.00 40.48 3.02
6323 6733 3.719816 GGGTGTCGTTTCCCTTCTT 57.280 52.632 0.00 0.00 40.48 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.