Multiple sequence alignment - TraesCS1B01G178800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G178800 chr1B 100.000 5748 0 0 1 5748 324335527 324341274 0.000000e+00 10615.0
1 TraesCS1B01G178800 chr1B 90.000 70 1 3 5120 5189 619685425 619685488 1.030000e-12 86.1
2 TraesCS1B01G178800 chr1B 87.500 72 9 0 5568 5639 486337409 486337338 3.690000e-12 84.2
3 TraesCS1B01G178800 chr1D 96.202 4160 127 16 712 4862 224392009 224396146 0.000000e+00 6778.0
4 TraesCS1B01G178800 chr1D 88.077 260 17 4 5230 5489 224396516 224396761 4.350000e-76 296.0
5 TraesCS1B01G178800 chr1D 89.655 232 21 3 5519 5748 224399376 224399606 5.630000e-75 292.0
6 TraesCS1B01G178800 chr1D 91.146 192 10 2 4937 5121 224396143 224396334 2.660000e-63 254.0
7 TraesCS1B01G178800 chr1D 90.909 77 7 0 4859 4935 468831810 468831886 2.830000e-18 104.0
8 TraesCS1B01G178800 chr1D 94.203 69 1 3 5120 5188 74410541 74410476 1.020000e-17 102.0
9 TraesCS1B01G178800 chr1D 92.857 70 2 3 5119 5188 74410470 74410536 1.320000e-16 99.0
10 TraesCS1B01G178800 chr1D 80.303 132 14 6 5568 5690 363099849 363099721 7.930000e-14 89.8
11 TraesCS1B01G178800 chr1A 95.629 4187 139 22 686 4861 291241837 291245990 0.000000e+00 6678.0
12 TraesCS1B01G178800 chr1A 89.648 483 42 5 5230 5710 291246826 291247302 4.920000e-170 608.0
13 TraesCS1B01G178800 chr1A 87.524 529 63 3 5 532 301163960 301163434 4.920000e-170 608.0
14 TraesCS1B01G178800 chr1A 94.915 118 6 0 4935 5052 291245983 291246100 9.840000e-43 185.0
15 TraesCS1B01G178800 chr1A 86.239 109 13 2 531 638 301163403 301163296 3.640000e-22 117.0
16 TraesCS1B01G178800 chr1A 93.939 66 3 1 5120 5184 24628756 24628821 1.320000e-16 99.0
17 TraesCS1B01G178800 chr1A 93.939 66 3 1 5120 5184 24635194 24635259 1.320000e-16 99.0
18 TraesCS1B01G178800 chr6B 90.602 532 48 1 1 532 256454380 256453851 0.000000e+00 704.0
19 TraesCS1B01G178800 chr7B 90.432 533 51 0 1 533 624343765 624343233 0.000000e+00 702.0
20 TraesCS1B01G178800 chr7B 91.743 109 9 0 531 639 624343203 624343095 9.980000e-33 152.0
21 TraesCS1B01G178800 chr7B 92.405 79 4 2 4859 4936 13869196 13869119 1.690000e-20 111.0
22 TraesCS1B01G178800 chr7B 92.000 75 5 1 5115 5188 639489822 639489896 2.830000e-18 104.0
23 TraesCS1B01G178800 chr5D 76.203 374 62 17 5380 5739 475363010 475363370 7.660000e-39 172.0
24 TraesCS1B01G178800 chr5D 86.022 93 11 2 4845 4936 447626921 447627012 1.320000e-16 99.0
25 TraesCS1B01G178800 chr4B 75.445 281 63 6 154 431 454988585 454988862 1.300000e-26 132.0
26 TraesCS1B01G178800 chr2B 92.683 82 5 1 4856 4936 26955687 26955606 3.640000e-22 117.0
27 TraesCS1B01G178800 chr2B 89.024 82 8 1 4856 4936 26955597 26955678 3.660000e-17 100.0
28 TraesCS1B01G178800 chr2B 91.304 46 3 1 5076 5121 372311914 372311958 1.730000e-05 62.1
29 TraesCS1B01G178800 chr2B 96.875 32 1 0 5445 5476 161382109 161382140 3.000000e-03 54.7
30 TraesCS1B01G178800 chr7D 92.683 82 3 3 4857 4936 45403753 45403833 1.310000e-21 115.0
31 TraesCS1B01G178800 chr7D 72.127 409 104 6 5 408 433740057 433739654 1.310000e-21 115.0
32 TraesCS1B01G178800 chr6D 95.714 70 3 0 5120 5189 298214007 298214076 4.710000e-21 113.0
33 TraesCS1B01G178800 chr2D 92.405 79 5 1 4859 4936 14946063 14945985 1.690000e-20 111.0
34 TraesCS1B01G178800 chr4D 91.139 79 6 1 4859 4936 137891304 137891382 7.880000e-19 106.0
35 TraesCS1B01G178800 chr5B 87.778 90 9 2 550 637 918680 918591 2.830000e-18 104.0
36 TraesCS1B01G178800 chr7A 89.157 83 5 4 4856 4936 127585718 127585798 3.660000e-17 100.0
37 TraesCS1B01G178800 chrUn 87.356 87 10 1 553 638 38961747 38961833 1.320000e-16 99.0
38 TraesCS1B01G178800 chr3B 91.549 71 4 2 5120 5188 795802794 795802864 4.740000e-16 97.1
39 TraesCS1B01G178800 chr3B 91.549 71 4 2 5120 5188 795802869 795802799 4.740000e-16 97.1
40 TraesCS1B01G178800 chr4A 82.540 63 8 3 4909 4969 597691358 597691419 1.000000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G178800 chr1B 324335527 324341274 5747 False 10615.000000 10615 100.000000 1 5748 1 chr1B.!!$F1 5747
1 TraesCS1B01G178800 chr1D 224392009 224399606 7597 False 1905.000000 6778 91.270000 712 5748 4 chr1D.!!$F3 5036
2 TraesCS1B01G178800 chr1A 291241837 291247302 5465 False 2490.333333 6678 93.397333 686 5710 3 chr1A.!!$F3 5024
3 TraesCS1B01G178800 chr1A 301163296 301163960 664 True 362.500000 608 86.881500 5 638 2 chr1A.!!$R1 633
4 TraesCS1B01G178800 chr6B 256453851 256454380 529 True 704.000000 704 90.602000 1 532 1 chr6B.!!$R1 531
5 TraesCS1B01G178800 chr7B 624343095 624343765 670 True 427.000000 702 91.087500 1 639 2 chr7B.!!$R2 638

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
279 280 0.036010 AGGTGTTCCTCATCGCCTTG 60.036 55.000 0.00 0.00 40.58 3.61 F
1124 1161 0.319555 GCAGACCTCGTAGTGCACAA 60.320 55.000 21.04 0.08 35.91 3.33 F
1126 1163 1.000163 CAGACCTCGTAGTGCACAAGT 60.000 52.381 21.04 6.38 0.00 3.16 F
1894 1938 1.002792 GAAGTTGTGGTGCTTTCCGAC 60.003 52.381 0.00 0.00 0.00 4.79 F
2440 2485 1.406614 CCATTGACACCTGAGCTCCTC 60.407 57.143 12.15 0.00 0.00 3.71 F
3390 3435 2.489938 TATGGGAGGTGCAAACAGAC 57.510 50.000 0.00 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 1893 0.036105 TACGTAGACGACTGCCCTGA 60.036 55.000 9.41 0.00 43.02 3.86 R
2499 2544 0.395311 CAATGCTGCAGGAGGGACAT 60.395 55.000 17.12 6.13 0.00 3.06 R
3016 3061 2.035066 AGTCAACAGCAAAATGCCTGAC 59.965 45.455 16.08 16.08 46.52 3.51 R
3187 3232 1.459450 TTATTCCTCAAAGGTGCGCC 58.541 50.000 8.71 8.71 36.53 6.53 R
4012 4057 0.908198 AACATCCTCACCTCCAGCTC 59.092 55.000 0.00 0.00 0.00 4.09 R
5172 5634 0.033504 CCGTCCTCCGTCCCATAATG 59.966 60.000 0.00 0.00 33.66 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 7.148272 GCTATTTTCTCAGCAATCTCTGTCTTT 60.148 37.037 0.00 0.00 37.73 2.52
31 32 6.551385 TTTTCTCAGCAATCTCTGTCTTTC 57.449 37.500 0.00 0.00 35.63 2.62
60 61 4.112634 ACCATTCGGTATGCCCATAATT 57.887 40.909 0.00 0.00 46.71 1.40
69 70 0.323816 TGCCCATAATTCGTGCCCAA 60.324 50.000 0.00 0.00 0.00 4.12
78 79 1.610363 TTCGTGCCCAAACTGCAATA 58.390 45.000 0.00 0.00 41.06 1.90
128 129 4.202253 CGTCAGTCCATCATATTCCTCCAA 60.202 45.833 0.00 0.00 0.00 3.53
250 251 3.181329 TCCTTGAAGATTACTCCCTGCA 58.819 45.455 0.00 0.00 0.00 4.41
279 280 0.036010 AGGTGTTCCTCATCGCCTTG 60.036 55.000 0.00 0.00 40.58 3.61
303 304 2.575461 GCAACATGGCTGAAGGGC 59.425 61.111 0.00 0.00 41.27 5.19
308 309 0.394899 ACATGGCTGAAGGGCTTAGC 60.395 55.000 0.00 0.00 41.48 3.09
309 310 0.394762 CATGGCTGAAGGGCTTAGCA 60.395 55.000 6.53 0.00 39.15 3.49
314 315 2.216898 GCTGAAGGGCTTAGCAGTATG 58.783 52.381 6.53 0.00 37.40 2.39
482 483 1.599047 CTCCACTCCCTGACGCATT 59.401 57.895 0.00 0.00 0.00 3.56
485 486 1.376424 CACTCCCTGACGCATTGCT 60.376 57.895 7.12 0.00 0.00 3.91
486 487 0.957395 CACTCCCTGACGCATTGCTT 60.957 55.000 7.12 0.00 0.00 3.91
498 499 0.804544 CATTGCTTGCCGGCATCTTG 60.805 55.000 33.25 20.90 42.09 3.02
511 512 1.615384 GCATCTTGCCACTCCCTCTTT 60.615 52.381 0.00 0.00 37.42 2.52
543 576 3.389206 GTCAAGATCGACGCAGGC 58.611 61.111 0.00 0.00 0.00 4.85
563 596 2.159338 GCCAGTCCGTACGTGAGATTTA 60.159 50.000 15.21 0.00 0.00 1.40
571 604 4.095483 CCGTACGTGAGATTTAGGTGTAGT 59.905 45.833 15.21 0.00 0.00 2.73
574 607 4.243270 ACGTGAGATTTAGGTGTAGTTGC 58.757 43.478 0.00 0.00 0.00 4.17
576 609 3.617263 GTGAGATTTAGGTGTAGTTGCGG 59.383 47.826 0.00 0.00 0.00 5.69
645 679 6.347859 CTAGCTACCTAGGGGATTAAACTG 57.652 45.833 14.81 0.00 37.90 3.16
646 680 3.391626 AGCTACCTAGGGGATTAAACTGC 59.608 47.826 14.81 0.00 36.25 4.40
647 681 3.391626 GCTACCTAGGGGATTAAACTGCT 59.608 47.826 14.81 0.00 36.25 4.24
648 682 4.591924 GCTACCTAGGGGATTAAACTGCTA 59.408 45.833 14.81 0.00 36.25 3.49
649 683 5.279556 GCTACCTAGGGGATTAAACTGCTAG 60.280 48.000 14.81 1.92 36.25 3.42
650 684 3.391626 ACCTAGGGGATTAAACTGCTAGC 59.608 47.826 14.81 8.10 36.25 3.42
651 685 3.391296 CCTAGGGGATTAAACTGCTAGCA 59.609 47.826 18.22 18.22 33.58 3.49
652 686 3.283259 AGGGGATTAAACTGCTAGCAC 57.717 47.619 14.93 1.52 0.00 4.40
653 687 2.092375 AGGGGATTAAACTGCTAGCACC 60.092 50.000 14.93 11.56 0.00 5.01
654 688 2.092375 GGGGATTAAACTGCTAGCACCT 60.092 50.000 14.93 0.00 0.00 4.00
655 689 3.135895 GGGGATTAAACTGCTAGCACCTA 59.864 47.826 14.93 2.36 0.00 3.08
656 690 4.381411 GGGATTAAACTGCTAGCACCTAG 58.619 47.826 14.93 6.74 37.16 3.02
657 691 4.141688 GGGATTAAACTGCTAGCACCTAGT 60.142 45.833 14.93 7.49 36.53 2.57
658 692 4.811557 GGATTAAACTGCTAGCACCTAGTG 59.188 45.833 14.93 5.51 36.53 2.74
659 693 2.770164 AAACTGCTAGCACCTAGTGG 57.230 50.000 14.93 4.69 36.53 4.00
675 709 7.470935 ACCTAGTGGTGTTAGTTTTGTTTTT 57.529 32.000 0.00 0.00 46.51 1.94
676 710 8.578448 ACCTAGTGGTGTTAGTTTTGTTTTTA 57.422 30.769 0.00 0.00 46.51 1.52
677 711 8.680001 ACCTAGTGGTGTTAGTTTTGTTTTTAG 58.320 33.333 0.00 0.00 46.51 1.85
678 712 8.895737 CCTAGTGGTGTTAGTTTTGTTTTTAGA 58.104 33.333 0.00 0.00 0.00 2.10
679 713 9.931210 CTAGTGGTGTTAGTTTTGTTTTTAGAG 57.069 33.333 0.00 0.00 0.00 2.43
680 714 7.255569 AGTGGTGTTAGTTTTGTTTTTAGAGC 58.744 34.615 0.00 0.00 0.00 4.09
681 715 7.122204 AGTGGTGTTAGTTTTGTTTTTAGAGCT 59.878 33.333 0.00 0.00 0.00 4.09
682 716 7.220108 GTGGTGTTAGTTTTGTTTTTAGAGCTG 59.780 37.037 0.00 0.00 0.00 4.24
683 717 7.121463 TGGTGTTAGTTTTGTTTTTAGAGCTGA 59.879 33.333 0.00 0.00 0.00 4.26
684 718 7.431376 GGTGTTAGTTTTGTTTTTAGAGCTGAC 59.569 37.037 0.00 0.00 0.00 3.51
685 719 7.163682 GTGTTAGTTTTGTTTTTAGAGCTGACG 59.836 37.037 0.00 0.00 0.00 4.35
686 720 7.064847 TGTTAGTTTTGTTTTTAGAGCTGACGA 59.935 33.333 0.00 0.00 0.00 4.20
687 721 5.807344 AGTTTTGTTTTTAGAGCTGACGAC 58.193 37.500 0.00 0.00 0.00 4.34
688 722 4.446857 TTTGTTTTTAGAGCTGACGACG 57.553 40.909 0.00 0.00 0.00 5.12
689 723 3.358707 TGTTTTTAGAGCTGACGACGA 57.641 42.857 0.00 0.00 0.00 4.20
690 724 3.047796 TGTTTTTAGAGCTGACGACGAC 58.952 45.455 0.00 0.00 0.00 4.34
691 725 1.959747 TTTTAGAGCTGACGACGACG 58.040 50.000 5.58 5.58 45.75 5.12
692 726 1.150827 TTTAGAGCTGACGACGACGA 58.849 50.000 15.32 0.00 42.66 4.20
693 727 0.720027 TTAGAGCTGACGACGACGAG 59.280 55.000 15.32 2.79 42.66 4.18
694 728 1.694018 TAGAGCTGACGACGACGAGC 61.694 60.000 15.32 13.27 42.66 5.03
774 811 3.054655 CCCAAGCCCAGTTACTTAGCTAA 60.055 47.826 5.94 5.94 32.39 3.09
808 845 1.361668 CGGCCCAGATCGAACACAAG 61.362 60.000 0.00 0.00 0.00 3.16
860 897 2.771689 GAGACGTACTCGCAACACTAG 58.228 52.381 0.00 0.00 41.18 2.57
863 900 1.467734 ACGTACTCGCAACACTAGGAG 59.532 52.381 0.00 0.00 41.18 3.69
943 980 1.420138 ACGGAACATCTGGACCAAACT 59.580 47.619 0.00 0.00 0.00 2.66
1032 1069 4.446371 GAGGTCTTGAGAGAGAGAGAGAG 58.554 52.174 0.00 0.00 31.07 3.20
1033 1070 4.104086 AGGTCTTGAGAGAGAGAGAGAGA 58.896 47.826 0.00 0.00 31.07 3.10
1034 1071 4.163078 AGGTCTTGAGAGAGAGAGAGAGAG 59.837 50.000 0.00 0.00 31.07 3.20
1035 1072 4.162320 GGTCTTGAGAGAGAGAGAGAGAGA 59.838 50.000 0.00 0.00 31.07 3.10
1036 1073 5.355596 GTCTTGAGAGAGAGAGAGAGAGAG 58.644 50.000 0.00 0.00 31.07 3.20
1037 1074 5.127845 GTCTTGAGAGAGAGAGAGAGAGAGA 59.872 48.000 0.00 0.00 31.07 3.10
1124 1161 0.319555 GCAGACCTCGTAGTGCACAA 60.320 55.000 21.04 0.08 35.91 3.33
1125 1162 1.702886 CAGACCTCGTAGTGCACAAG 58.297 55.000 21.04 9.73 0.00 3.16
1126 1163 1.000163 CAGACCTCGTAGTGCACAAGT 60.000 52.381 21.04 6.38 0.00 3.16
1235 1272 1.669760 CGGCCGCAAAGGTCTGTTA 60.670 57.895 14.67 0.00 44.20 2.41
1249 1287 5.876357 AGGTCTGTTATTTAAGGCTTGTGA 58.124 37.500 10.69 0.00 0.00 3.58
1283 1321 5.425577 TTTGTTTCTGCGTGCAATTACTA 57.574 34.783 0.00 0.00 0.00 1.82
1306 1344 8.005388 ACTAGTCAGTACATAGGTTGGTGATAT 58.995 37.037 0.00 0.00 31.45 1.63
1849 1893 1.697982 GTCAACAAGGTACAGGGGACT 59.302 52.381 0.00 0.00 46.44 3.85
1894 1938 1.002792 GAAGTTGTGGTGCTTTCCGAC 60.003 52.381 0.00 0.00 0.00 4.79
2064 2108 7.851387 TGTCAATGCATGCAATCATTTTTAT 57.149 28.000 26.68 0.00 31.15 1.40
2229 2274 2.336945 TTGATCGATCATTGCAGGCT 57.663 45.000 27.75 0.00 36.56 4.58
2284 2329 5.639082 CACTTGTATGATGTACTTGCTGTCA 59.361 40.000 0.00 0.00 0.00 3.58
2354 2399 8.897872 TTTTGATAAGTCGGTATTATCCTTCC 57.102 34.615 10.59 0.00 38.37 3.46
2440 2485 1.406614 CCATTGACACCTGAGCTCCTC 60.407 57.143 12.15 0.00 0.00 3.71
2974 3019 3.138283 CAGGCCATACTTTTATCCTGGGA 59.862 47.826 5.01 0.00 37.89 4.37
2976 3021 4.420214 AGGCCATACTTTTATCCTGGGATT 59.580 41.667 5.01 0.00 36.17 3.01
3016 3061 9.916397 GTGTATGTTAAAGTTGAAAGGATATCG 57.084 33.333 0.00 0.00 0.00 2.92
3118 3163 8.049117 TCAACTGGAGCAAAATATCTCAGTATT 58.951 33.333 0.00 0.00 0.00 1.89
3189 3234 8.755696 AAAATGTTTTTCTTTTTCTTTTGGGC 57.244 26.923 0.00 0.00 30.90 5.36
3190 3235 5.538067 TGTTTTTCTTTTTCTTTTGGGCG 57.462 34.783 0.00 0.00 0.00 6.13
3191 3236 4.142795 TGTTTTTCTTTTTCTTTTGGGCGC 60.143 37.500 0.00 0.00 0.00 6.53
3323 3368 2.490509 TGTGATTGCTTCATTGCCTCTG 59.509 45.455 0.00 0.00 36.54 3.35
3390 3435 2.489938 TATGGGAGGTGCAAACAGAC 57.510 50.000 0.00 0.00 0.00 3.51
3632 3677 4.864247 GCATATGCATTTTTGGAGAACGTT 59.136 37.500 22.84 0.00 41.59 3.99
3638 3683 5.221224 TGCATTTTTGGAGAACGTTCAAGAT 60.221 36.000 28.78 12.57 0.00 2.40
3706 3751 7.285401 CCAGCCTTATTGAACCTACAAATGTAT 59.715 37.037 0.00 0.00 33.44 2.29
3707 3752 8.686334 CAGCCTTATTGAACCTACAAATGTATT 58.314 33.333 0.00 0.00 33.44 1.89
4012 4057 6.340522 AGAAAACAACAATTTCTGGGTTCAG 58.659 36.000 1.04 0.00 43.56 3.02
4169 4214 7.219322 TCAGTCAAGATCTGATTGTCAAAAGA 58.781 34.615 0.00 4.34 41.38 2.52
4208 4253 1.660575 CGCGTCGACAGAAACTGGT 60.661 57.895 17.16 0.00 35.51 4.00
4211 4256 0.944311 CGTCGACAGAAACTGGTGGG 60.944 60.000 17.16 0.00 35.51 4.61
4253 4298 8.365399 TCAAAAAGGTATGTTCTATATGCTCG 57.635 34.615 0.00 0.00 0.00 5.03
4293 4338 5.682862 CACAAAGAGTTGAATGCTAACACAC 59.317 40.000 0.00 0.00 38.20 3.82
4294 4339 5.356751 ACAAAGAGTTGAATGCTAACACACA 59.643 36.000 0.00 0.00 38.20 3.72
4301 4347 3.125146 TGAATGCTAACACACAGAATCGC 59.875 43.478 0.00 0.00 0.00 4.58
4457 4503 4.811557 ACTGAAAGGCTTATCGTATTCTGC 59.188 41.667 0.00 0.00 39.30 4.26
4528 4574 3.132481 GAGAGAGGAGAAGCGGCGG 62.132 68.421 9.78 0.00 0.00 6.13
4592 4638 0.889186 GGTATATGTGGGCTTGCCCG 60.889 60.000 23.81 0.00 0.00 6.13
4850 4897 3.119101 AGCCAGTGATGGAAACTACTACG 60.119 47.826 0.00 0.00 0.00 3.51
4855 4902 6.349944 CCAGTGATGGAAACTACTACGTACTT 60.350 42.308 0.00 0.00 0.00 2.24
4856 4903 7.148188 CCAGTGATGGAAACTACTACGTACTTA 60.148 40.741 0.00 0.00 0.00 2.24
4857 4904 7.695618 CAGTGATGGAAACTACTACGTACTTAC 59.304 40.741 0.00 0.00 0.00 2.34
4858 4905 7.609532 AGTGATGGAAACTACTACGTACTTACT 59.390 37.037 0.00 0.00 0.00 2.24
4859 4906 8.883731 GTGATGGAAACTACTACGTACTTACTA 58.116 37.037 0.00 0.00 0.00 1.82
4860 4907 8.883731 TGATGGAAACTACTACGTACTTACTAC 58.116 37.037 0.00 0.00 0.00 2.73
4861 4908 9.103861 GATGGAAACTACTACGTACTTACTACT 57.896 37.037 0.00 0.00 0.00 2.57
4862 4909 8.480643 TGGAAACTACTACGTACTTACTACTC 57.519 38.462 0.00 0.00 0.00 2.59
4863 4910 7.549488 TGGAAACTACTACGTACTTACTACTCC 59.451 40.741 0.00 0.00 0.00 3.85
4864 4911 7.011576 GGAAACTACTACGTACTTACTACTCCC 59.988 44.444 0.00 0.00 0.00 4.30
4865 4912 6.800072 ACTACTACGTACTTACTACTCCCT 57.200 41.667 0.00 0.00 0.00 4.20
4866 4913 7.189079 ACTACTACGTACTTACTACTCCCTT 57.811 40.000 0.00 0.00 0.00 3.95
4867 4914 7.269316 ACTACTACGTACTTACTACTCCCTTC 58.731 42.308 0.00 0.00 0.00 3.46
4868 4915 5.112686 ACTACGTACTTACTACTCCCTTCG 58.887 45.833 0.00 0.00 0.00 3.79
4869 4916 3.944087 ACGTACTTACTACTCCCTTCGT 58.056 45.455 0.00 0.00 0.00 3.85
4870 4917 3.935828 ACGTACTTACTACTCCCTTCGTC 59.064 47.826 0.00 0.00 0.00 4.20
4871 4918 3.311048 CGTACTTACTACTCCCTTCGTCC 59.689 52.174 0.00 0.00 0.00 4.79
4872 4919 2.732763 ACTTACTACTCCCTTCGTCCC 58.267 52.381 0.00 0.00 0.00 4.46
4873 4920 2.042162 ACTTACTACTCCCTTCGTCCCA 59.958 50.000 0.00 0.00 0.00 4.37
4874 4921 3.297736 CTTACTACTCCCTTCGTCCCAT 58.702 50.000 0.00 0.00 0.00 4.00
4875 4922 4.079558 ACTTACTACTCCCTTCGTCCCATA 60.080 45.833 0.00 0.00 0.00 2.74
4876 4923 3.393426 ACTACTCCCTTCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
4877 4924 3.924922 ACTACTCCCTTCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
4878 4925 5.070823 ACTACTCCCTTCGTCCCATAATA 57.929 43.478 0.00 0.00 0.00 0.98
4879 4926 5.652324 ACTACTCCCTTCGTCCCATAATAT 58.348 41.667 0.00 0.00 0.00 1.28
4880 4927 6.797707 ACTACTCCCTTCGTCCCATAATATA 58.202 40.000 0.00 0.00 0.00 0.86
4881 4928 7.243824 ACTACTCCCTTCGTCCCATAATATAA 58.756 38.462 0.00 0.00 0.00 0.98
4882 4929 6.607004 ACTCCCTTCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
4883 4930 6.320518 ACTCCCTTCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
4884 4931 6.785963 ACTCCCTTCGTCCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
4885 4932 7.001099 TCCCTTCGTCCCATAATATAAGAAC 57.999 40.000 0.00 0.00 0.00 3.01
4886 4933 5.867716 CCCTTCGTCCCATAATATAAGAACG 59.132 44.000 0.00 0.00 0.00 3.95
4887 4934 6.453092 CCTTCGTCCCATAATATAAGAACGT 58.547 40.000 0.00 0.00 0.00 3.99
4888 4935 6.927381 CCTTCGTCCCATAATATAAGAACGTT 59.073 38.462 0.00 0.00 0.00 3.99
4889 4936 7.440255 CCTTCGTCCCATAATATAAGAACGTTT 59.560 37.037 0.46 0.00 0.00 3.60
4890 4937 8.721019 TTCGTCCCATAATATAAGAACGTTTT 57.279 30.769 0.46 0.00 0.00 2.43
4891 4938 8.721019 TCGTCCCATAATATAAGAACGTTTTT 57.279 30.769 9.22 9.22 0.00 1.94
4892 4939 9.814899 TCGTCCCATAATATAAGAACGTTTTTA 57.185 29.630 13.02 13.02 0.00 1.52
4895 4942 9.059260 TCCCATAATATAAGAACGTTTTTAGGC 57.941 33.333 15.45 0.00 0.00 3.93
4896 4943 9.063615 CCCATAATATAAGAACGTTTTTAGGCT 57.936 33.333 15.45 3.56 0.00 4.58
4905 4952 7.974482 AGAACGTTTTTAGGCTATGTTAACT 57.026 32.000 0.46 0.00 0.00 2.24
4906 4953 8.387190 AGAACGTTTTTAGGCTATGTTAACTT 57.613 30.769 0.46 3.03 0.00 2.66
4907 4954 8.287503 AGAACGTTTTTAGGCTATGTTAACTTG 58.712 33.333 0.46 0.00 0.00 3.16
4908 4955 7.733402 ACGTTTTTAGGCTATGTTAACTTGA 57.267 32.000 7.22 0.00 0.00 3.02
4909 4956 8.156994 ACGTTTTTAGGCTATGTTAACTTGAA 57.843 30.769 7.22 0.00 0.00 2.69
4910 4957 8.623030 ACGTTTTTAGGCTATGTTAACTTGAAA 58.377 29.630 7.22 0.00 0.00 2.69
4911 4958 9.453325 CGTTTTTAGGCTATGTTAACTTGAAAA 57.547 29.630 7.22 2.09 0.00 2.29
4914 4961 9.453325 TTTTAGGCTATGTTAACTTGAAAAACG 57.547 29.630 7.22 0.00 0.00 3.60
4915 4962 5.458015 AGGCTATGTTAACTTGAAAAACGC 58.542 37.500 7.22 0.00 0.00 4.84
4916 4963 5.240844 AGGCTATGTTAACTTGAAAAACGCT 59.759 36.000 7.22 0.00 0.00 5.07
4917 4964 5.567915 GGCTATGTTAACTTGAAAAACGCTC 59.432 40.000 7.22 0.00 0.00 5.03
4918 4965 6.371389 GCTATGTTAACTTGAAAAACGCTCT 58.629 36.000 7.22 0.00 0.00 4.09
4919 4966 6.856426 GCTATGTTAACTTGAAAAACGCTCTT 59.144 34.615 7.22 0.00 0.00 2.85
4920 4967 8.013378 GCTATGTTAACTTGAAAAACGCTCTTA 58.987 33.333 7.22 0.00 0.00 2.10
4929 4976 8.621286 ACTTGAAAAACGCTCTTATATTATGGG 58.379 33.333 0.00 0.00 0.00 4.00
4930 4977 8.740123 TTGAAAAACGCTCTTATATTATGGGA 57.260 30.769 0.00 0.00 0.00 4.37
4931 4978 8.149973 TGAAAAACGCTCTTATATTATGGGAC 57.850 34.615 0.00 0.00 0.00 4.46
4932 4979 6.780706 AAAACGCTCTTATATTATGGGACG 57.219 37.500 0.00 0.00 0.00 4.79
4933 4980 4.451629 ACGCTCTTATATTATGGGACGG 57.548 45.455 0.00 0.00 0.00 4.79
4953 5000 3.436180 CGGAGTACTACATAGGAGGGGTT 60.436 52.174 5.80 0.00 0.00 4.11
4976 5023 3.553511 CGTGTAGGAGATGAATTGTCAGC 59.446 47.826 0.00 0.00 40.63 4.26
5000 5047 2.494471 TCATGCTCAGATTTTGGCAAGG 59.506 45.455 0.00 0.00 36.83 3.61
5054 5102 5.432885 GCTGTTAGCCTTCACTGTTTTTA 57.567 39.130 0.00 0.00 34.48 1.52
5055 5103 5.452777 GCTGTTAGCCTTCACTGTTTTTAG 58.547 41.667 0.00 0.00 34.48 1.85
5062 5113 5.299531 AGCCTTCACTGTTTTTAGGTCTTTC 59.700 40.000 0.00 0.00 0.00 2.62
5121 5583 4.822036 TGTTGTGCACATAGTTTGGTAC 57.178 40.909 22.39 12.78 0.00 3.34
5122 5584 4.456535 TGTTGTGCACATAGTTTGGTACT 58.543 39.130 22.39 0.00 41.04 2.73
5123 5585 4.513692 TGTTGTGCACATAGTTTGGTACTC 59.486 41.667 22.39 0.00 38.33 2.59
5124 5586 3.670625 TGTGCACATAGTTTGGTACTCC 58.329 45.455 17.42 0.00 38.33 3.85
5125 5587 3.007635 GTGCACATAGTTTGGTACTCCC 58.992 50.000 13.17 0.00 38.33 4.30
5126 5588 2.910319 TGCACATAGTTTGGTACTCCCT 59.090 45.455 0.00 0.00 38.33 4.20
5127 5589 3.055385 TGCACATAGTTTGGTACTCCCTC 60.055 47.826 0.00 0.00 38.33 4.30
5128 5590 3.681874 GCACATAGTTTGGTACTCCCTCC 60.682 52.174 0.00 0.00 38.33 4.30
5129 5591 2.764572 ACATAGTTTGGTACTCCCTCCG 59.235 50.000 0.00 0.00 38.33 4.63
5130 5592 2.610438 TAGTTTGGTACTCCCTCCGT 57.390 50.000 0.00 0.00 38.33 4.69
5131 5593 1.264295 AGTTTGGTACTCCCTCCGTC 58.736 55.000 0.00 0.00 28.23 4.79
5132 5594 0.248565 GTTTGGTACTCCCTCCGTCC 59.751 60.000 0.00 0.00 0.00 4.79
5133 5595 0.906282 TTTGGTACTCCCTCCGTCCC 60.906 60.000 0.00 0.00 0.00 4.46
5134 5596 2.832201 GGTACTCCCTCCGTCCCG 60.832 72.222 0.00 0.00 0.00 5.14
5135 5597 2.044551 GTACTCCCTCCGTCCCGT 60.045 66.667 0.00 0.00 0.00 5.28
5136 5598 1.224592 GTACTCCCTCCGTCCCGTA 59.775 63.158 0.00 0.00 0.00 4.02
5137 5599 0.394352 GTACTCCCTCCGTCCCGTAA 60.394 60.000 0.00 0.00 0.00 3.18
5138 5600 0.552848 TACTCCCTCCGTCCCGTAAT 59.447 55.000 0.00 0.00 0.00 1.89
5139 5601 1.041447 ACTCCCTCCGTCCCGTAATG 61.041 60.000 0.00 0.00 0.00 1.90
5140 5602 1.000739 TCCCTCCGTCCCGTAATGT 59.999 57.895 0.00 0.00 0.00 2.71
5141 5603 0.258484 TCCCTCCGTCCCGTAATGTA 59.742 55.000 0.00 0.00 0.00 2.29
5142 5604 1.113788 CCCTCCGTCCCGTAATGTAA 58.886 55.000 0.00 0.00 0.00 2.41
5143 5605 1.068127 CCCTCCGTCCCGTAATGTAAG 59.932 57.143 0.00 0.00 0.00 2.34
5144 5606 2.026641 CCTCCGTCCCGTAATGTAAGA 58.973 52.381 0.00 0.00 0.00 2.10
5145 5607 2.223665 CCTCCGTCCCGTAATGTAAGAC 60.224 54.545 0.00 0.00 0.00 3.01
5147 5609 1.133025 CCGTCCCGTAATGTAAGACGT 59.867 52.381 9.63 0.00 46.62 4.34
5148 5610 2.415893 CCGTCCCGTAATGTAAGACGTT 60.416 50.000 9.63 0.00 46.62 3.99
5149 5611 3.244976 CGTCCCGTAATGTAAGACGTTT 58.755 45.455 2.88 0.00 43.89 3.60
5150 5612 3.674753 CGTCCCGTAATGTAAGACGTTTT 59.325 43.478 0.00 0.00 43.89 2.43
5151 5613 4.150451 CGTCCCGTAATGTAAGACGTTTTT 59.850 41.667 0.00 0.00 43.89 1.94
5184 5646 6.753107 AAAAAGTCTTACATTATGGGACGG 57.247 37.500 0.00 0.00 32.86 4.79
5185 5647 5.687166 AAAGTCTTACATTATGGGACGGA 57.313 39.130 0.00 0.00 32.86 4.69
5186 5648 4.939052 AGTCTTACATTATGGGACGGAG 57.061 45.455 0.00 0.00 32.86 4.63
5187 5649 3.641906 AGTCTTACATTATGGGACGGAGG 59.358 47.826 0.00 0.00 32.86 4.30
5188 5650 3.640029 GTCTTACATTATGGGACGGAGGA 59.360 47.826 0.00 0.00 0.00 3.71
5189 5651 3.640029 TCTTACATTATGGGACGGAGGAC 59.360 47.826 0.00 0.00 0.00 3.85
5199 5661 2.593978 CGGAGGACGGAGGGAGTA 59.406 66.667 0.00 0.00 39.42 2.59
5293 5977 3.136808 TGACGATGTCTTCATCTCACG 57.863 47.619 0.00 0.00 45.76 4.35
5295 5979 1.203928 CGATGTCTTCATCTCACGCC 58.796 55.000 6.64 0.00 45.76 5.68
5316 6000 0.326264 CCCAAACTGACCAGGAGAGG 59.674 60.000 0.00 0.00 0.00 3.69
5326 6010 3.288964 GACCAGGAGAGGATAAAGTCGA 58.711 50.000 0.00 0.00 0.00 4.20
5413 6097 3.216800 ACTTGTTCATGACATGTGTGCT 58.783 40.909 14.98 0.00 42.91 4.40
5416 6100 6.172630 ACTTGTTCATGACATGTGTGCTATA 58.827 36.000 14.98 0.00 42.91 1.31
5418 6102 6.421377 TGTTCATGACATGTGTGCTATAAC 57.579 37.500 14.98 9.70 32.00 1.89
5423 6107 5.622346 TGACATGTGTGCTATAACCCATA 57.378 39.130 1.15 0.00 0.00 2.74
5443 6127 8.657712 ACCCATAAACTGTAAACTCTTAGAACT 58.342 33.333 0.00 0.00 0.00 3.01
5461 6145 5.084519 AGAACTCTTCCTATGTACACCACA 58.915 41.667 0.00 0.00 42.69 4.17
5472 6156 4.901197 TGTACACCACATACCACTTCAT 57.099 40.909 0.00 0.00 30.04 2.57
5541 8810 7.487829 ACACAACATATGAAACAGAAACAACAC 59.512 33.333 10.38 0.00 0.00 3.32
5620 8889 6.910191 TGATGTCATCCTACCACCATATTTT 58.090 36.000 10.36 0.00 0.00 1.82
5651 8920 9.730705 ATGGTGTAATCCTATTAGTTCATCATG 57.269 33.333 0.00 0.00 0.00 3.07
5653 8922 7.607991 GGTGTAATCCTATTAGTTCATCATGGG 59.392 40.741 0.00 0.00 0.00 4.00
5654 8923 8.157476 GTGTAATCCTATTAGTTCATCATGGGT 58.843 37.037 0.00 0.00 0.00 4.51
5657 8926 6.340962 TCCTATTAGTTCATCATGGGTACG 57.659 41.667 0.00 0.00 0.00 3.67
5659 8928 6.208797 TCCTATTAGTTCATCATGGGTACGAG 59.791 42.308 0.00 0.00 0.00 4.18
5682 8952 7.366520 AGGGGTTAGTATATACCACCTCATA 57.633 40.000 24.34 3.87 38.67 2.15
5703 8973 9.825972 CTCATAAAAATATATAGGCCAACAACG 57.174 33.333 5.01 0.00 0.00 4.10
5704 8974 9.344772 TCATAAAAATATATAGGCCAACAACGT 57.655 29.630 5.01 0.00 0.00 3.99
5718 8990 6.445475 GCCAACAACGTTTTTAAACCCTATA 58.555 36.000 0.00 0.00 35.51 1.31
5722 8994 9.558648 CAACAACGTTTTTAAACCCTATATACC 57.441 33.333 0.00 0.00 35.51 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.761559 CACGAATTATGGGCATACCGA 58.238 47.619 0.00 0.00 44.64 4.69
54 55 2.094803 TGCAGTTTGGGCACGAATTATG 60.095 45.455 0.00 0.00 36.11 1.90
60 61 0.878416 GTATTGCAGTTTGGGCACGA 59.122 50.000 0.00 0.00 41.75 4.35
69 70 7.321153 AGTACAAGTTAGATCGTATTGCAGTT 58.679 34.615 0.00 0.00 0.00 3.16
78 79 6.413052 TGTAGAGGAGTACAAGTTAGATCGT 58.587 40.000 0.00 0.00 29.74 3.73
128 129 3.361977 GAAATGCCGCGGTGGTGT 61.362 61.111 28.70 8.07 41.21 4.16
141 142 1.901833 GGCCCATGGTTGTTCAGAAAT 59.098 47.619 11.73 0.00 0.00 2.17
263 264 1.621317 TGTACAAGGCGATGAGGAACA 59.379 47.619 0.00 0.00 0.00 3.18
279 280 0.322456 TCAGCCATGTTGCCCTGTAC 60.322 55.000 0.00 0.00 0.00 2.90
285 286 3.010413 GCCCTTCAGCCATGTTGCC 62.010 63.158 0.00 0.00 0.00 4.52
294 295 2.158900 TCATACTGCTAAGCCCTTCAGC 60.159 50.000 0.00 0.00 35.82 4.26
303 304 8.507249 GCAATATTTAGGGTTCATACTGCTAAG 58.493 37.037 0.00 0.00 0.00 2.18
308 309 8.299570 GGATTGCAATATTTAGGGTTCATACTG 58.700 37.037 12.97 0.00 0.00 2.74
309 310 8.004215 TGGATTGCAATATTTAGGGTTCATACT 58.996 33.333 12.97 0.00 0.00 2.12
314 315 5.977129 CGTTGGATTGCAATATTTAGGGTTC 59.023 40.000 12.97 0.00 0.00 3.62
498 499 2.436824 GCGGAAAGAGGGAGTGGC 60.437 66.667 0.00 0.00 0.00 5.01
511 512 4.451150 GACGGACTGCATGGCGGA 62.451 66.667 3.71 0.00 38.46 5.54
540 573 2.282674 TCACGTACGGACTGGCCT 60.283 61.111 21.06 0.00 0.00 5.19
543 576 2.649331 AAATCTCACGTACGGACTGG 57.351 50.000 21.06 5.04 0.00 4.00
563 596 1.480954 CACCTATCCGCAACTACACCT 59.519 52.381 0.00 0.00 0.00 4.00
571 604 0.912487 AGGGTTCCACCTATCCGCAA 60.912 55.000 0.00 0.00 39.65 4.85
574 607 0.680061 GCTAGGGTTCCACCTATCCG 59.320 60.000 0.00 0.00 42.03 4.18
576 609 0.680061 CCGCTAGGGTTCCACCTATC 59.320 60.000 6.02 0.00 42.03 2.08
604 638 0.327576 AGGGTTCCACCTATCCCCTG 60.328 60.000 0.00 0.00 44.09 4.45
639 673 3.887621 CCACTAGGTGCTAGCAGTTTA 57.112 47.619 20.03 9.89 37.57 2.01
640 674 2.770164 CCACTAGGTGCTAGCAGTTT 57.230 50.000 20.03 9.20 37.57 2.66
652 686 8.895737 TCTAAAAACAAAACTAACACCACTAGG 58.104 33.333 0.00 0.00 42.21 3.02
653 687 9.931210 CTCTAAAAACAAAACTAACACCACTAG 57.069 33.333 0.00 0.00 0.00 2.57
654 688 8.400186 GCTCTAAAAACAAAACTAACACCACTA 58.600 33.333 0.00 0.00 0.00 2.74
655 689 7.122204 AGCTCTAAAAACAAAACTAACACCACT 59.878 33.333 0.00 0.00 0.00 4.00
656 690 7.220108 CAGCTCTAAAAACAAAACTAACACCAC 59.780 37.037 0.00 0.00 0.00 4.16
657 691 7.121463 TCAGCTCTAAAAACAAAACTAACACCA 59.879 33.333 0.00 0.00 0.00 4.17
658 692 7.431376 GTCAGCTCTAAAAACAAAACTAACACC 59.569 37.037 0.00 0.00 0.00 4.16
659 693 7.163682 CGTCAGCTCTAAAAACAAAACTAACAC 59.836 37.037 0.00 0.00 0.00 3.32
660 694 7.064847 TCGTCAGCTCTAAAAACAAAACTAACA 59.935 33.333 0.00 0.00 0.00 2.41
661 695 7.372657 GTCGTCAGCTCTAAAAACAAAACTAAC 59.627 37.037 0.00 0.00 0.00 2.34
662 696 7.404203 GTCGTCAGCTCTAAAAACAAAACTAA 58.596 34.615 0.00 0.00 0.00 2.24
663 697 6.291955 CGTCGTCAGCTCTAAAAACAAAACTA 60.292 38.462 0.00 0.00 0.00 2.24
664 698 5.501897 CGTCGTCAGCTCTAAAAACAAAACT 60.502 40.000 0.00 0.00 0.00 2.66
665 699 4.664851 CGTCGTCAGCTCTAAAAACAAAAC 59.335 41.667 0.00 0.00 0.00 2.43
666 700 4.567558 TCGTCGTCAGCTCTAAAAACAAAA 59.432 37.500 0.00 0.00 0.00 2.44
667 701 4.026310 GTCGTCGTCAGCTCTAAAAACAAA 60.026 41.667 0.00 0.00 0.00 2.83
668 702 3.488310 GTCGTCGTCAGCTCTAAAAACAA 59.512 43.478 0.00 0.00 0.00 2.83
669 703 3.047796 GTCGTCGTCAGCTCTAAAAACA 58.952 45.455 0.00 0.00 0.00 2.83
670 704 2.088664 CGTCGTCGTCAGCTCTAAAAAC 59.911 50.000 0.00 0.00 0.00 2.43
671 705 2.031769 TCGTCGTCGTCAGCTCTAAAAA 60.032 45.455 1.33 0.00 38.33 1.94
672 706 1.532437 TCGTCGTCGTCAGCTCTAAAA 59.468 47.619 1.33 0.00 38.33 1.52
673 707 1.128136 CTCGTCGTCGTCAGCTCTAAA 59.872 52.381 1.33 0.00 38.33 1.85
674 708 0.720027 CTCGTCGTCGTCAGCTCTAA 59.280 55.000 1.33 0.00 38.33 2.10
675 709 1.694018 GCTCGTCGTCGTCAGCTCTA 61.694 60.000 8.15 0.00 35.17 2.43
676 710 3.029564 GCTCGTCGTCGTCAGCTCT 62.030 63.158 8.15 0.00 35.17 4.09
677 711 2.515947 AAGCTCGTCGTCGTCAGCTC 62.516 60.000 16.03 0.00 43.18 4.09
678 712 2.131294 AAAGCTCGTCGTCGTCAGCT 62.131 55.000 11.36 11.36 44.90 4.24
679 713 1.666446 GAAAGCTCGTCGTCGTCAGC 61.666 60.000 7.48 7.48 37.24 4.26
680 714 1.066114 GGAAAGCTCGTCGTCGTCAG 61.066 60.000 1.33 0.00 38.33 3.51
681 715 1.081641 GGAAAGCTCGTCGTCGTCA 60.082 57.895 1.33 0.00 38.33 4.35
682 716 0.386985 AAGGAAAGCTCGTCGTCGTC 60.387 55.000 1.33 0.00 38.33 4.20
683 717 0.031721 AAAGGAAAGCTCGTCGTCGT 59.968 50.000 1.33 0.00 38.33 4.34
684 718 1.124477 GAAAAGGAAAGCTCGTCGTCG 59.876 52.381 0.00 0.00 38.55 5.12
685 719 1.459975 GGAAAAGGAAAGCTCGTCGTC 59.540 52.381 0.00 0.00 0.00 4.20
686 720 1.509703 GGAAAAGGAAAGCTCGTCGT 58.490 50.000 0.00 0.00 0.00 4.34
687 721 0.796927 GGGAAAAGGAAAGCTCGTCG 59.203 55.000 0.00 0.00 0.00 5.12
688 722 0.796927 CGGGAAAAGGAAAGCTCGTC 59.203 55.000 0.00 0.00 0.00 4.20
689 723 0.395312 TCGGGAAAAGGAAAGCTCGT 59.605 50.000 0.00 0.00 0.00 4.18
690 724 0.796927 GTCGGGAAAAGGAAAGCTCG 59.203 55.000 0.00 0.00 0.00 5.03
691 725 0.796927 CGTCGGGAAAAGGAAAGCTC 59.203 55.000 0.00 0.00 0.00 4.09
692 726 0.395312 TCGTCGGGAAAAGGAAAGCT 59.605 50.000 0.00 0.00 0.00 3.74
693 727 0.516001 GTCGTCGGGAAAAGGAAAGC 59.484 55.000 0.00 0.00 0.00 3.51
694 728 0.788391 CGTCGTCGGGAAAAGGAAAG 59.212 55.000 0.00 0.00 0.00 2.62
808 845 2.165319 ACGTAACAGGGAGTTTCTGC 57.835 50.000 0.00 0.00 41.64 4.26
885 922 4.451150 GATGGCCGCCTGACACGA 62.451 66.667 11.61 0.00 0.00 4.35
994 1031 3.743091 CTCCTCGCTCTCGTTCCGC 62.743 68.421 0.00 0.00 36.96 5.54
995 1032 2.405594 CTCCTCGCTCTCGTTCCG 59.594 66.667 0.00 0.00 36.96 4.30
997 1034 1.027792 AGACCTCCTCGCTCTCGTTC 61.028 60.000 0.00 0.00 36.96 3.95
998 1035 0.609681 AAGACCTCCTCGCTCTCGTT 60.610 55.000 0.00 0.00 36.96 3.85
1032 1069 2.107953 GCGCCCAGACCATCTCTC 59.892 66.667 0.00 0.00 0.00 3.20
1033 1070 2.364842 AGCGCCCAGACCATCTCT 60.365 61.111 2.29 0.00 0.00 3.10
1034 1071 2.202987 CAGCGCCCAGACCATCTC 60.203 66.667 2.29 0.00 0.00 2.75
1035 1072 2.685017 TCAGCGCCCAGACCATCT 60.685 61.111 2.29 0.00 0.00 2.90
1036 1073 2.512515 GTCAGCGCCCAGACCATC 60.513 66.667 2.29 0.00 0.00 3.51
1087 1124 2.797278 CGGAATCGGAGTGGGGGAG 61.797 68.421 0.00 0.00 0.00 4.30
1136 1173 4.559153 GAAACCATTCATCACCAAACTGG 58.441 43.478 0.00 0.00 38.32 4.00
1235 1272 6.438425 ACCTGAATGAATCACAAGCCTTAAAT 59.562 34.615 0.00 0.00 33.47 1.40
1249 1287 4.984161 CGCAGAAACAAAACCTGAATGAAT 59.016 37.500 0.00 0.00 0.00 2.57
1283 1321 6.839134 TCATATCACCAACCTATGTACTGACT 59.161 38.462 0.00 0.00 0.00 3.41
1627 1671 7.333323 ACAGTCTCATACATGATGTTCAATGA 58.667 34.615 2.29 6.37 36.84 2.57
1849 1893 0.036105 TACGTAGACGACTGCCCTGA 60.036 55.000 9.41 0.00 43.02 3.86
2003 2047 8.739039 ACAGATAGTTGCACATGCTAAATAAAA 58.261 29.630 5.31 0.00 42.66 1.52
2004 2048 8.279970 ACAGATAGTTGCACATGCTAAATAAA 57.720 30.769 5.31 0.00 42.66 1.40
2005 2049 7.864108 ACAGATAGTTGCACATGCTAAATAA 57.136 32.000 5.31 0.00 42.66 1.40
2008 2052 7.102993 TCTTACAGATAGTTGCACATGCTAAA 58.897 34.615 5.31 0.00 42.66 1.85
2229 2274 6.070251 ACCACTAACCAATAGATGTCATGACA 60.070 38.462 29.67 29.67 39.18 3.58
2284 2329 7.148069 GGCAAAACCTATGCTTACTAATGAACT 60.148 37.037 0.00 0.00 43.34 3.01
2354 2399 5.810587 ACTTACGAGTAACATATGCACCTTG 59.189 40.000 1.58 2.56 33.32 3.61
2499 2544 0.395311 CAATGCTGCAGGAGGGACAT 60.395 55.000 17.12 6.13 0.00 3.06
2974 3019 5.385198 ACATACACCACCTTTTCTGACAAT 58.615 37.500 0.00 0.00 0.00 2.71
2976 3021 4.431416 ACATACACCACCTTTTCTGACA 57.569 40.909 0.00 0.00 0.00 3.58
3016 3061 2.035066 AGTCAACAGCAAAATGCCTGAC 59.965 45.455 16.08 16.08 46.52 3.51
3118 3163 2.878406 GCTGTTAGCACAAAACTCCTCA 59.122 45.455 0.00 0.00 41.89 3.86
3187 3232 1.459450 TTATTCCTCAAAGGTGCGCC 58.541 50.000 8.71 8.71 36.53 6.53
3189 3234 2.423185 TGCATTATTCCTCAAAGGTGCG 59.577 45.455 0.00 0.00 36.53 5.34
3190 3235 4.660789 ATGCATTATTCCTCAAAGGTGC 57.339 40.909 0.00 0.00 36.53 5.01
3191 3236 7.325694 AGAAAATGCATTATTCCTCAAAGGTG 58.674 34.615 13.39 0.00 36.53 4.00
3226 3271 9.288576 CTTCATCTAGAATTTGGGTGCATTATA 57.711 33.333 0.00 0.00 35.25 0.98
3231 3276 5.178096 TCTTCATCTAGAATTTGGGTGCA 57.822 39.130 0.00 0.00 35.25 4.57
3289 3334 3.054434 AGCAATCACATAAGGTAGCACCA 60.054 43.478 7.86 0.00 41.95 4.17
3323 3368 8.841444 ATAACAAGATAAATCGTCATGCAAAC 57.159 30.769 0.00 0.00 0.00 2.93
3390 3435 8.894409 TGTTAATTTCATGCTTAAGTCATTCG 57.106 30.769 4.02 0.00 0.00 3.34
3638 3683 9.461312 ACTGCTTAATGTTAAGATGTCCAAATA 57.539 29.630 14.90 0.00 42.05 1.40
3677 3722 3.329520 TGTAGGTTCAATAAGGCTGGTGT 59.670 43.478 0.00 0.00 0.00 4.16
4012 4057 0.908198 AACATCCTCACCTCCAGCTC 59.092 55.000 0.00 0.00 0.00 4.09
4169 4214 1.229464 AGGAGCTGGCTGAAGGACT 60.229 57.895 0.00 0.00 0.00 3.85
4192 4237 0.944311 CCCACCAGTTTCTGTCGACG 60.944 60.000 11.62 6.07 0.00 5.12
4208 4253 4.462133 TGAATCGTTTGAAGTTAACCCCA 58.538 39.130 0.88 0.00 0.00 4.96
4211 4256 7.490079 ACCTTTTTGAATCGTTTGAAGTTAACC 59.510 33.333 0.88 0.00 0.00 2.85
4253 4298 4.097286 TCTTTGTGCCAAAAAGGACTACAC 59.903 41.667 7.50 0.00 41.22 2.90
4293 4338 1.135257 AGTCGAAGGTCAGCGATTCTG 60.135 52.381 0.00 0.00 44.21 3.02
4294 4339 1.178276 AGTCGAAGGTCAGCGATTCT 58.822 50.000 0.00 0.00 38.91 2.40
4301 4347 3.321497 CCTCTGAAAAGTCGAAGGTCAG 58.679 50.000 9.32 9.32 37.62 3.51
4457 4503 4.011023 TCAGACTCTCTACGGAAAGGAAG 58.989 47.826 0.00 0.00 0.00 3.46
4850 4897 3.629855 GGGACGAAGGGAGTAGTAAGTAC 59.370 52.174 0.00 0.00 0.00 2.73
4855 4902 4.524802 TTATGGGACGAAGGGAGTAGTA 57.475 45.455 0.00 0.00 0.00 1.82
4856 4903 3.393426 TTATGGGACGAAGGGAGTAGT 57.607 47.619 0.00 0.00 0.00 2.73
4857 4904 7.614583 TCTTATATTATGGGACGAAGGGAGTAG 59.385 40.741 0.00 0.00 0.00 2.57
4858 4905 7.472741 TCTTATATTATGGGACGAAGGGAGTA 58.527 38.462 0.00 0.00 0.00 2.59
4859 4906 6.320518 TCTTATATTATGGGACGAAGGGAGT 58.679 40.000 0.00 0.00 0.00 3.85
4860 4907 6.852420 TCTTATATTATGGGACGAAGGGAG 57.148 41.667 0.00 0.00 0.00 4.30
4861 4908 6.294899 CGTTCTTATATTATGGGACGAAGGGA 60.295 42.308 0.00 0.00 0.00 4.20
4862 4909 5.867716 CGTTCTTATATTATGGGACGAAGGG 59.132 44.000 0.00 0.00 0.00 3.95
4863 4910 6.453092 ACGTTCTTATATTATGGGACGAAGG 58.547 40.000 14.76 0.00 0.00 3.46
4864 4911 7.941795 AACGTTCTTATATTATGGGACGAAG 57.058 36.000 14.76 0.00 0.00 3.79
4865 4912 8.721019 AAAACGTTCTTATATTATGGGACGAA 57.279 30.769 0.00 0.00 0.00 3.85
4866 4913 8.721019 AAAAACGTTCTTATATTATGGGACGA 57.279 30.769 0.00 0.00 0.00 4.20
4869 4916 9.059260 GCCTAAAAACGTTCTTATATTATGGGA 57.941 33.333 0.00 0.00 0.00 4.37
4870 4917 9.063615 AGCCTAAAAACGTTCTTATATTATGGG 57.936 33.333 0.00 0.00 0.00 4.00
4879 4926 9.492973 AGTTAACATAGCCTAAAAACGTTCTTA 57.507 29.630 8.61 0.00 0.00 2.10
4880 4927 8.387190 AGTTAACATAGCCTAAAAACGTTCTT 57.613 30.769 8.61 0.00 0.00 2.52
4881 4928 7.974482 AGTTAACATAGCCTAAAAACGTTCT 57.026 32.000 8.61 0.00 0.00 3.01
4882 4929 8.284693 TCAAGTTAACATAGCCTAAAAACGTTC 58.715 33.333 8.61 0.00 0.00 3.95
4883 4930 8.156994 TCAAGTTAACATAGCCTAAAAACGTT 57.843 30.769 8.61 0.00 0.00 3.99
4884 4931 7.733402 TCAAGTTAACATAGCCTAAAAACGT 57.267 32.000 8.61 0.00 0.00 3.99
4885 4932 9.453325 TTTTCAAGTTAACATAGCCTAAAAACG 57.547 29.630 8.61 0.00 0.00 3.60
4888 4935 9.453325 CGTTTTTCAAGTTAACATAGCCTAAAA 57.547 29.630 8.61 2.87 0.00 1.52
4889 4936 7.592164 GCGTTTTTCAAGTTAACATAGCCTAAA 59.408 33.333 8.61 0.00 0.00 1.85
4890 4937 7.040961 AGCGTTTTTCAAGTTAACATAGCCTAA 60.041 33.333 8.61 0.00 0.00 2.69
4891 4938 6.428771 AGCGTTTTTCAAGTTAACATAGCCTA 59.571 34.615 8.61 0.00 0.00 3.93
4892 4939 5.240844 AGCGTTTTTCAAGTTAACATAGCCT 59.759 36.000 8.61 0.00 0.00 4.58
4893 4940 5.458015 AGCGTTTTTCAAGTTAACATAGCC 58.542 37.500 8.61 0.00 0.00 3.93
4894 4941 6.371389 AGAGCGTTTTTCAAGTTAACATAGC 58.629 36.000 8.61 0.58 0.00 2.97
4903 4950 8.621286 CCCATAATATAAGAGCGTTTTTCAAGT 58.379 33.333 0.00 0.00 0.00 3.16
4904 4951 8.836413 TCCCATAATATAAGAGCGTTTTTCAAG 58.164 33.333 0.00 0.00 0.00 3.02
4905 4952 8.617809 GTCCCATAATATAAGAGCGTTTTTCAA 58.382 33.333 0.00 0.00 0.00 2.69
4906 4953 7.042321 CGTCCCATAATATAAGAGCGTTTTTCA 60.042 37.037 0.00 0.00 0.00 2.69
4907 4954 7.288672 CGTCCCATAATATAAGAGCGTTTTTC 58.711 38.462 0.00 0.00 0.00 2.29
4908 4955 6.204108 CCGTCCCATAATATAAGAGCGTTTTT 59.796 38.462 0.00 0.00 0.00 1.94
4909 4956 5.699458 CCGTCCCATAATATAAGAGCGTTTT 59.301 40.000 0.00 0.00 0.00 2.43
4910 4957 5.011329 TCCGTCCCATAATATAAGAGCGTTT 59.989 40.000 0.00 0.00 0.00 3.60
4911 4958 4.525487 TCCGTCCCATAATATAAGAGCGTT 59.475 41.667 0.00 0.00 0.00 4.84
4912 4959 4.084287 TCCGTCCCATAATATAAGAGCGT 58.916 43.478 0.00 0.00 0.00 5.07
4913 4960 4.158025 ACTCCGTCCCATAATATAAGAGCG 59.842 45.833 0.00 0.00 0.00 5.03
4914 4961 5.662674 ACTCCGTCCCATAATATAAGAGC 57.337 43.478 0.00 0.00 0.00 4.09
4915 4962 7.941431 AGTACTCCGTCCCATAATATAAGAG 57.059 40.000 0.00 0.00 0.00 2.85
4916 4963 8.385491 TGTAGTACTCCGTCCCATAATATAAGA 58.615 37.037 0.00 0.00 0.00 2.10
4917 4964 8.571461 TGTAGTACTCCGTCCCATAATATAAG 57.429 38.462 0.00 0.00 0.00 1.73
4919 4966 9.842775 CTATGTAGTACTCCGTCCCATAATATA 57.157 37.037 0.00 0.00 0.00 0.86
4920 4967 7.778853 CCTATGTAGTACTCCGTCCCATAATAT 59.221 40.741 0.00 0.00 0.00 1.28
4921 4968 7.037370 TCCTATGTAGTACTCCGTCCCATAATA 60.037 40.741 0.00 0.00 0.00 0.98
4922 4969 5.950549 CCTATGTAGTACTCCGTCCCATAAT 59.049 44.000 0.00 0.00 0.00 1.28
4923 4970 5.073554 TCCTATGTAGTACTCCGTCCCATAA 59.926 44.000 0.00 0.00 0.00 1.90
4924 4971 4.598807 TCCTATGTAGTACTCCGTCCCATA 59.401 45.833 0.00 0.00 0.00 2.74
4925 4972 3.396946 TCCTATGTAGTACTCCGTCCCAT 59.603 47.826 0.00 0.00 0.00 4.00
4926 4973 2.779430 TCCTATGTAGTACTCCGTCCCA 59.221 50.000 0.00 0.00 0.00 4.37
4927 4974 3.410508 CTCCTATGTAGTACTCCGTCCC 58.589 54.545 0.00 0.00 0.00 4.46
4928 4975 3.410508 CCTCCTATGTAGTACTCCGTCC 58.589 54.545 0.00 0.00 0.00 4.79
4929 4976 3.410508 CCCTCCTATGTAGTACTCCGTC 58.589 54.545 0.00 0.00 0.00 4.79
4930 4977 2.107901 CCCCTCCTATGTAGTACTCCGT 59.892 54.545 0.00 0.00 0.00 4.69
4931 4978 2.107901 ACCCCTCCTATGTAGTACTCCG 59.892 54.545 0.00 0.00 0.00 4.63
4932 4979 3.899612 ACCCCTCCTATGTAGTACTCC 57.100 52.381 0.00 0.00 0.00 3.85
4933 4980 3.819902 CGAACCCCTCCTATGTAGTACTC 59.180 52.174 0.00 0.00 0.00 2.59
4953 5000 4.678044 GCTGACAATTCATCTCCTACACGA 60.678 45.833 0.00 0.00 0.00 4.35
4976 5023 5.507482 CCTTGCCAAAATCTGAGCATGATAG 60.507 44.000 0.00 0.00 33.15 2.08
5043 5090 6.411376 TGAGTGAAAGACCTAAAAACAGTGA 58.589 36.000 0.00 0.00 0.00 3.41
5054 5102 3.648545 AGCCTAAGTTGAGTGAAAGACCT 59.351 43.478 0.00 0.00 0.00 3.85
5055 5103 3.748568 CAGCCTAAGTTGAGTGAAAGACC 59.251 47.826 0.00 0.00 0.00 3.85
5062 5113 4.537135 TTACCTCAGCCTAAGTTGAGTG 57.463 45.455 4.71 0.00 46.72 3.51
5105 5567 2.910319 AGGGAGTACCAAACTATGTGCA 59.090 45.455 0.00 0.00 43.89 4.57
5129 5591 5.596268 AAAAACGTCTTACATTACGGGAC 57.404 39.130 0.00 0.00 43.25 4.46
5161 5623 6.478129 TCCGTCCCATAATGTAAGACTTTTT 58.522 36.000 0.00 0.00 0.00 1.94
5162 5624 6.057321 TCCGTCCCATAATGTAAGACTTTT 57.943 37.500 0.00 0.00 0.00 2.27
5163 5625 5.396436 CCTCCGTCCCATAATGTAAGACTTT 60.396 44.000 0.00 0.00 0.00 2.66
5164 5626 4.101119 CCTCCGTCCCATAATGTAAGACTT 59.899 45.833 0.00 0.00 0.00 3.01
5165 5627 3.641906 CCTCCGTCCCATAATGTAAGACT 59.358 47.826 0.00 0.00 0.00 3.24
5166 5628 3.640029 TCCTCCGTCCCATAATGTAAGAC 59.360 47.826 0.00 0.00 0.00 3.01
5167 5629 3.640029 GTCCTCCGTCCCATAATGTAAGA 59.360 47.826 0.00 0.00 0.00 2.10
5168 5630 3.552273 CGTCCTCCGTCCCATAATGTAAG 60.552 52.174 0.00 0.00 0.00 2.34
5169 5631 2.363038 CGTCCTCCGTCCCATAATGTAA 59.637 50.000 0.00 0.00 0.00 2.41
5170 5632 1.958579 CGTCCTCCGTCCCATAATGTA 59.041 52.381 0.00 0.00 0.00 2.29
5171 5633 0.750850 CGTCCTCCGTCCCATAATGT 59.249 55.000 0.00 0.00 0.00 2.71
5172 5634 0.033504 CCGTCCTCCGTCCCATAATG 59.966 60.000 0.00 0.00 33.66 1.90
5173 5635 0.105862 TCCGTCCTCCGTCCCATAAT 60.106 55.000 0.00 0.00 33.66 1.28
5174 5636 0.754217 CTCCGTCCTCCGTCCCATAA 60.754 60.000 0.00 0.00 33.66 1.90
5175 5637 1.152819 CTCCGTCCTCCGTCCCATA 60.153 63.158 0.00 0.00 33.66 2.74
5176 5638 2.442272 CTCCGTCCTCCGTCCCAT 60.442 66.667 0.00 0.00 33.66 4.00
5177 5639 4.753662 CCTCCGTCCTCCGTCCCA 62.754 72.222 0.00 0.00 33.66 4.37
5179 5641 4.437587 TCCCTCCGTCCTCCGTCC 62.438 72.222 0.00 0.00 33.66 4.79
5180 5642 2.262774 TACTCCCTCCGTCCTCCGTC 62.263 65.000 0.00 0.00 33.66 4.79
5181 5643 2.268167 CTACTCCCTCCGTCCTCCGT 62.268 65.000 0.00 0.00 33.66 4.69
5182 5644 1.526455 CTACTCCCTCCGTCCTCCG 60.526 68.421 0.00 0.00 0.00 4.63
5183 5645 1.829096 GCTACTCCCTCCGTCCTCC 60.829 68.421 0.00 0.00 0.00 4.30
5184 5646 0.396001 AAGCTACTCCCTCCGTCCTC 60.396 60.000 0.00 0.00 0.00 3.71
5185 5647 0.924823 TAAGCTACTCCCTCCGTCCT 59.075 55.000 0.00 0.00 0.00 3.85
5186 5648 1.031235 GTAAGCTACTCCCTCCGTCC 58.969 60.000 0.00 0.00 0.00 4.79
5187 5649 1.760192 TGTAAGCTACTCCCTCCGTC 58.240 55.000 0.00 0.00 0.00 4.79
5188 5650 2.456073 ATGTAAGCTACTCCCTCCGT 57.544 50.000 0.00 0.00 0.00 4.69
5189 5651 3.193691 CCATATGTAAGCTACTCCCTCCG 59.806 52.174 1.24 0.00 0.00 4.63
5190 5652 3.055747 GCCATATGTAAGCTACTCCCTCC 60.056 52.174 1.24 0.00 0.00 4.30
5191 5653 3.055747 GGCCATATGTAAGCTACTCCCTC 60.056 52.174 0.00 0.00 0.00 4.30
5192 5654 2.907042 GGCCATATGTAAGCTACTCCCT 59.093 50.000 0.00 0.00 0.00 4.20
5193 5655 2.027100 GGGCCATATGTAAGCTACTCCC 60.027 54.545 4.39 0.00 0.00 4.30
5194 5656 2.637872 TGGGCCATATGTAAGCTACTCC 59.362 50.000 0.00 0.00 0.00 3.85
5195 5657 4.223923 AGATGGGCCATATGTAAGCTACTC 59.776 45.833 21.26 2.55 0.00 2.59
5196 5658 4.019860 CAGATGGGCCATATGTAAGCTACT 60.020 45.833 28.71 11.49 29.68 2.57
5197 5659 4.256920 CAGATGGGCCATATGTAAGCTAC 58.743 47.826 28.71 9.41 29.68 3.58
5198 5660 3.307691 GCAGATGGGCCATATGTAAGCTA 60.308 47.826 34.36 0.00 35.75 3.32
5199 5661 2.553904 GCAGATGGGCCATATGTAAGCT 60.554 50.000 34.36 17.51 35.75 3.74
5293 5977 3.365265 CTGGTCAGTTTGGGCGGC 61.365 66.667 0.00 0.00 0.00 6.53
5295 5979 1.672356 CTCCTGGTCAGTTTGGGCG 60.672 63.158 0.00 0.00 0.00 6.13
5316 6000 5.010213 AGAGGATGCCTAGTTCGACTTTATC 59.990 44.000 0.00 0.00 31.76 1.75
5416 6100 9.281371 GTTCTAAGAGTTTACAGTTTATGGGTT 57.719 33.333 0.00 0.00 0.00 4.11
5418 6102 9.152595 GAGTTCTAAGAGTTTACAGTTTATGGG 57.847 37.037 0.00 0.00 0.00 4.00
5423 6107 8.706521 AGGAAGAGTTCTAAGAGTTTACAGTTT 58.293 33.333 0.00 0.00 0.00 2.66
5438 6122 5.084519 TGTGGTGTACATAGGAAGAGTTCT 58.915 41.667 0.00 0.00 33.42 3.01
5461 6145 9.851686 TTTTTATCATGCTAGATGAAGTGGTAT 57.148 29.630 0.00 0.00 0.00 2.73
5489 6173 2.406130 TGCTTGCTGCTTAATTGTTGC 58.594 42.857 0.00 0.00 43.37 4.17
5490 6174 5.177881 TCATTTGCTTGCTGCTTAATTGTTG 59.822 36.000 0.00 0.00 43.37 3.33
5503 6187 5.634439 TCATATGTTGTGTTCATTTGCTTGC 59.366 36.000 1.90 0.00 0.00 4.01
5541 8810 4.641989 GGGGTATAAGATTATGCATGCCTG 59.358 45.833 16.68 0.00 0.00 4.85
5640 8909 2.963101 CCCTCGTACCCATGATGAACTA 59.037 50.000 0.00 0.00 0.00 2.24
5647 8916 1.007479 ACTAACCCCTCGTACCCATGA 59.993 52.381 0.00 0.00 0.00 3.07
5651 8920 4.950475 GGTATATACTAACCCCTCGTACCC 59.050 50.000 12.54 0.00 0.00 3.69
5653 8922 5.416013 GGTGGTATATACTAACCCCTCGTAC 59.584 48.000 19.60 0.51 34.69 3.67
5654 8923 5.313240 AGGTGGTATATACTAACCCCTCGTA 59.687 44.000 23.55 0.00 33.62 3.43
5657 8926 5.648247 TGAGGTGGTATATACTAACCCCTC 58.352 45.833 23.55 21.54 44.84 4.30
5659 8928 8.439964 TTTATGAGGTGGTATATACTAACCCC 57.560 38.462 23.55 17.42 35.13 4.95
5682 8952 9.713713 AAAAACGTTGTTGGCCTATATATTTTT 57.286 25.926 2.06 6.65 0.00 1.94
5718 8990 9.725019 ACGATGATGATGTACATTTTATGGTAT 57.275 29.630 10.30 0.00 39.56 2.73
5722 8994 7.229530 CCGACGATGATGATGTACATTTTATG 58.770 38.462 10.30 0.41 39.56 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.