Multiple sequence alignment - TraesCS1B01G178500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G178500 chr1B 100.000 3410 0 0 1 3410 323633585 323636994 0.000000e+00 6298
1 TraesCS1B01G178500 chr1B 90.984 366 30 3 1919 2283 572288732 572288369 1.100000e-134 490
2 TraesCS1B01G178500 chr1B 98.507 134 2 0 2945 3078 522748672 522748805 1.580000e-58 237
3 TraesCS1B01G178500 chr1D 90.855 1181 79 22 1599 2770 224141153 224142313 0.000000e+00 1555
4 TraesCS1B01G178500 chr1D 83.594 896 85 34 480 1322 224138905 224139791 0.000000e+00 784
5 TraesCS1B01G178500 chr1D 97.561 164 4 0 3247 3410 224144136 224144299 7.200000e-72 281
6 TraesCS1B01G178500 chr1D 90.710 183 3 5 3073 3255 224142517 224142685 7.360000e-57 231
7 TraesCS1B01G178500 chr1A 91.565 818 46 12 1730 2528 290555263 290556076 0.000000e+00 1107
8 TraesCS1B01G178500 chr1A 87.481 663 37 27 746 1370 290554227 290554881 0.000000e+00 723
9 TraesCS1B01G178500 chr1A 91.803 366 23 6 2516 2875 290556525 290556889 1.410000e-138 503
10 TraesCS1B01G178500 chr1A 89.617 366 35 3 1919 2283 518954223 518953860 2.400000e-126 462
11 TraesCS1B01G178500 chr1A 86.849 365 44 4 1919 2282 111988536 111988175 4.100000e-109 405
12 TraesCS1B01G178500 chr1A 80.357 560 81 15 1 556 290553467 290554001 6.860000e-107 398
13 TraesCS1B01G178500 chr1A 89.641 251 22 3 3149 3398 290591786 290592033 1.970000e-82 316
14 TraesCS1B01G178500 chr1A 97.761 134 3 0 2945 3078 108916588 108916721 7.360000e-57 231
15 TraesCS1B01G178500 chr1A 92.405 79 6 0 1368 1446 396462065 396461987 2.780000e-21 113
16 TraesCS1B01G178500 chr1A 93.421 76 5 0 1368 1443 590462264 590462339 2.780000e-21 113
17 TraesCS1B01G178500 chr1A 91.358 81 5 2 1368 1447 230209892 230209813 3.600000e-20 110
18 TraesCS1B01G178500 chr2A 90.164 366 33 3 1919 2283 780743732 780743369 1.110000e-129 473
19 TraesCS1B01G178500 chr2A 99.248 133 1 0 2946 3078 647751928 647752060 1.220000e-59 241
20 TraesCS1B01G178500 chr2A 94.928 138 7 0 2945 3082 205193365 205193502 2.060000e-52 217
21 TraesCS1B01G178500 chr2A 92.683 82 6 0 1365 1446 745064562 745064481 5.980000e-23 119
22 TraesCS1B01G178500 chr2B 90.137 365 33 3 1919 2282 776687567 776687929 3.980000e-129 472
23 TraesCS1B01G178500 chr2D 89.344 366 36 3 1919 2283 633593395 633593758 1.120000e-124 457
24 TraesCS1B01G178500 chr2D 94.928 138 7 0 2945 3082 539450262 539450399 2.060000e-52 217
25 TraesCS1B01G178500 chr3B 87.123 365 43 4 1919 2282 646715265 646714904 8.810000e-111 411
26 TraesCS1B01G178500 chr7B 98.529 136 2 0 2948 3083 210805379 210805244 1.220000e-59 241
27 TraesCS1B01G178500 chr7B 97.778 135 2 1 2948 3081 542985694 542985560 7.360000e-57 231
28 TraesCS1B01G178500 chr5A 97.810 137 2 1 2948 3083 104976984 104977120 5.690000e-58 235
29 TraesCS1B01G178500 chr6A 95.556 135 6 0 2948 3082 586992440 586992306 2.060000e-52 217
30 TraesCS1B01G178500 chr7A 94.681 94 5 0 1368 1461 86246529 86246622 2.740000e-31 147
31 TraesCS1B01G178500 chr7A 93.590 78 5 0 1366 1443 605411432 605411509 2.150000e-22 117
32 TraesCS1B01G178500 chr6B 97.183 71 2 0 1365 1435 13491298 13491228 1.660000e-23 121
33 TraesCS1B01G178500 chr4A 97.183 71 2 0 1365 1435 154922128 154922198 1.660000e-23 121
34 TraesCS1B01G178500 chr3A 93.590 78 5 0 1366 1443 743184785 743184862 2.150000e-22 117


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G178500 chr1B 323633585 323636994 3409 False 6298.00 6298 100.0000 1 3410 1 chr1B.!!$F1 3409
1 TraesCS1B01G178500 chr1D 224138905 224144299 5394 False 712.75 1555 90.6800 480 3410 4 chr1D.!!$F1 2930
2 TraesCS1B01G178500 chr1A 290553467 290556889 3422 False 682.75 1107 87.8015 1 2875 4 chr1A.!!$F4 2874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
361 363 0.040958 GCAGAGCGTGTTGAGGTTTG 60.041 55.0 0.0 0.0 0.0 2.93 F
1401 2496 0.103876 AGGGAGGGTTTGGAGAGGTT 60.104 55.0 0.0 0.0 0.0 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1778 3088 0.036765 GTTGTGCGGTCAGGTATGGA 60.037 55.0 0.0 0.0 0.00 3.41 R
3055 4996 0.107831 CCTTGTTCGGTTGACAGGGA 59.892 55.0 0.0 0.0 44.49 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 7.696017 ACAATTAAAGCTAGGGTTTCTCCTTA 58.304 34.615 0.00 0.00 38.30 2.69
40 41 4.348168 GGGTTTCTCCTTAGCCATCATCTA 59.652 45.833 0.00 0.00 36.25 1.98
46 47 3.576118 TCCTTAGCCATCATCTACTCTGC 59.424 47.826 0.00 0.00 0.00 4.26
50 51 1.043816 CCATCATCTACTCTGCCGGT 58.956 55.000 1.90 0.00 0.00 5.28
51 52 1.000283 CCATCATCTACTCTGCCGGTC 60.000 57.143 1.90 0.00 0.00 4.79
55 57 0.683504 ATCTACTCTGCCGGTCCGTT 60.684 55.000 11.06 0.00 0.00 4.44
74 76 2.824041 GTGTGGGTATGCGGGCAG 60.824 66.667 0.00 0.00 0.00 4.85
87 89 1.819632 GGGCAGCACCAATCTACCG 60.820 63.158 0.00 0.00 42.05 4.02
90 92 0.940126 GCAGCACCAATCTACCGATG 59.060 55.000 0.00 0.00 0.00 3.84
91 93 1.473257 GCAGCACCAATCTACCGATGA 60.473 52.381 0.00 0.00 0.00 2.92
95 97 1.414181 CACCAATCTACCGATGAGGCT 59.586 52.381 0.00 0.00 46.52 4.58
96 98 2.119495 ACCAATCTACCGATGAGGCTT 58.881 47.619 0.00 0.00 46.52 4.35
104 106 2.795329 ACCGATGAGGCTTGTCATTTT 58.205 42.857 0.00 0.00 46.52 1.82
113 115 2.291217 GGCTTGTCATTTTCCCCTCTCT 60.291 50.000 0.00 0.00 0.00 3.10
128 130 0.758734 TCTCTGGGTCGGGCAATATG 59.241 55.000 0.00 0.00 0.00 1.78
136 138 1.072331 GTCGGGCAATATGGTCTCCAT 59.928 52.381 6.52 6.52 46.99 3.41
142 144 2.487805 GCAATATGGTCTCCATGCCTCA 60.488 50.000 11.04 0.00 44.84 3.86
148 150 1.204146 GTCTCCATGCCTCACCCTTA 58.796 55.000 0.00 0.00 0.00 2.69
177 179 5.126396 TGATGCTTACTCGTATCATCAGG 57.874 43.478 13.64 0.00 38.70 3.86
178 180 4.827284 TGATGCTTACTCGTATCATCAGGA 59.173 41.667 13.64 0.00 38.70 3.86
179 181 4.837896 TGCTTACTCGTATCATCAGGAG 57.162 45.455 0.00 0.00 36.67 3.69
180 182 3.570125 TGCTTACTCGTATCATCAGGAGG 59.430 47.826 0.00 0.00 35.27 4.30
181 183 3.057174 GCTTACTCGTATCATCAGGAGGG 60.057 52.174 0.00 0.00 35.27 4.30
182 184 2.757894 ACTCGTATCATCAGGAGGGT 57.242 50.000 0.00 0.00 35.27 4.34
183 185 2.311463 ACTCGTATCATCAGGAGGGTG 58.689 52.381 0.00 0.00 35.27 4.61
184 186 2.311463 CTCGTATCATCAGGAGGGTGT 58.689 52.381 0.00 0.00 0.00 4.16
187 189 2.398588 GTATCATCAGGAGGGTGTGGA 58.601 52.381 0.00 0.00 0.00 4.02
191 193 1.842562 CATCAGGAGGGTGTGGAAGAT 59.157 52.381 0.00 0.00 0.00 2.40
193 195 2.752030 TCAGGAGGGTGTGGAAGATAG 58.248 52.381 0.00 0.00 0.00 2.08
194 196 2.044492 TCAGGAGGGTGTGGAAGATAGT 59.956 50.000 0.00 0.00 0.00 2.12
215 217 8.994429 ATAGTGTGTCTTCATTTCTAGTTCTG 57.006 34.615 0.00 0.00 0.00 3.02
217 219 5.466728 GTGTGTCTTCATTTCTAGTTCTGCA 59.533 40.000 0.00 0.00 0.00 4.41
219 221 5.698545 GTGTCTTCATTTCTAGTTCTGCAGT 59.301 40.000 14.67 0.00 0.00 4.40
221 223 6.767902 TGTCTTCATTTCTAGTTCTGCAGTTT 59.232 34.615 14.67 3.14 0.00 2.66
222 224 7.074502 GTCTTCATTTCTAGTTCTGCAGTTTG 58.925 38.462 14.67 2.49 0.00 2.93
224 226 5.620206 TCATTTCTAGTTCTGCAGTTTGGA 58.380 37.500 14.67 5.31 0.00 3.53
225 227 6.240894 TCATTTCTAGTTCTGCAGTTTGGAT 58.759 36.000 14.67 0.00 0.00 3.41
226 228 6.716628 TCATTTCTAGTTCTGCAGTTTGGATT 59.283 34.615 14.67 0.00 0.00 3.01
281 283 6.260050 GTCTTGAAGAGTGAACAATGTGGTTA 59.740 38.462 0.00 0.00 0.00 2.85
285 287 6.367695 TGAAGAGTGAACAATGTGGTTATACG 59.632 38.462 0.00 0.00 0.00 3.06
292 294 4.901868 ACAATGTGGTTATACGTCTTGGT 58.098 39.130 0.00 0.00 0.00 3.67
294 296 5.175859 CAATGTGGTTATACGTCTTGGTCT 58.824 41.667 0.00 0.00 0.00 3.85
295 297 4.877378 TGTGGTTATACGTCTTGGTCTT 57.123 40.909 0.00 0.00 0.00 3.01
296 298 4.813027 TGTGGTTATACGTCTTGGTCTTC 58.187 43.478 0.00 0.00 0.00 2.87
297 299 4.179298 GTGGTTATACGTCTTGGTCTTCC 58.821 47.826 0.00 0.00 0.00 3.46
303 305 0.602905 CGTCTTGGTCTTCCGGCTTT 60.603 55.000 0.00 0.00 36.30 3.51
306 308 1.087501 CTTGGTCTTCCGGCTTTAGC 58.912 55.000 0.00 0.00 41.14 3.09
343 345 2.202987 CCAGTCTGGCCTCATCGC 60.203 66.667 5.79 0.00 0.00 4.58
359 361 4.049393 GCAGAGCGTGTTGAGGTT 57.951 55.556 0.00 0.00 0.00 3.50
360 362 2.321213 GCAGAGCGTGTTGAGGTTT 58.679 52.632 0.00 0.00 0.00 3.27
361 363 0.040958 GCAGAGCGTGTTGAGGTTTG 60.041 55.000 0.00 0.00 0.00 2.93
362 364 1.299541 CAGAGCGTGTTGAGGTTTGT 58.700 50.000 0.00 0.00 0.00 2.83
363 365 1.003545 CAGAGCGTGTTGAGGTTTGTG 60.004 52.381 0.00 0.00 0.00 3.33
364 366 1.014352 GAGCGTGTTGAGGTTTGTGT 58.986 50.000 0.00 0.00 0.00 3.72
365 367 1.400494 GAGCGTGTTGAGGTTTGTGTT 59.600 47.619 0.00 0.00 0.00 3.32
366 368 1.400494 AGCGTGTTGAGGTTTGTGTTC 59.600 47.619 0.00 0.00 0.00 3.18
368 370 2.538939 GCGTGTTGAGGTTTGTGTTCTC 60.539 50.000 0.00 0.00 0.00 2.87
369 371 2.936498 CGTGTTGAGGTTTGTGTTCTCT 59.064 45.455 0.00 0.00 0.00 3.10
370 372 3.374058 CGTGTTGAGGTTTGTGTTCTCTT 59.626 43.478 0.00 0.00 0.00 2.85
371 373 4.569162 CGTGTTGAGGTTTGTGTTCTCTTA 59.431 41.667 0.00 0.00 0.00 2.10
372 374 5.236478 CGTGTTGAGGTTTGTGTTCTCTTAT 59.764 40.000 0.00 0.00 0.00 1.73
373 375 6.238374 CGTGTTGAGGTTTGTGTTCTCTTATT 60.238 38.462 0.00 0.00 0.00 1.40
374 376 7.042321 CGTGTTGAGGTTTGTGTTCTCTTATTA 60.042 37.037 0.00 0.00 0.00 0.98
375 377 8.068380 GTGTTGAGGTTTGTGTTCTCTTATTAC 58.932 37.037 0.00 0.00 0.00 1.89
376 378 7.990886 TGTTGAGGTTTGTGTTCTCTTATTACT 59.009 33.333 0.00 0.00 0.00 2.24
377 379 8.496751 GTTGAGGTTTGTGTTCTCTTATTACTC 58.503 37.037 0.00 0.00 0.00 2.59
378 380 7.159372 TGAGGTTTGTGTTCTCTTATTACTCC 58.841 38.462 0.00 0.00 0.00 3.85
379 381 6.164176 AGGTTTGTGTTCTCTTATTACTCCG 58.836 40.000 0.00 0.00 0.00 4.63
386 388 3.101437 TCTCTTATTACTCCGTTGGCCA 58.899 45.455 0.00 0.00 0.00 5.36
392 394 1.927487 TACTCCGTTGGCCAGAACTA 58.073 50.000 5.11 0.00 0.00 2.24
396 398 1.677552 CGTTGGCCAGAACTAGGGT 59.322 57.895 5.11 0.00 0.00 4.34
409 411 5.364157 CAGAACTAGGGTATTCTACAAGCCT 59.636 44.000 0.00 0.00 45.33 4.58
413 415 6.680540 ACTAGGGTATTCTACAAGCCTTCTA 58.319 40.000 0.00 0.00 40.68 2.10
416 418 9.482175 CTAGGGTATTCTACAAGCCTTCTATAT 57.518 37.037 0.00 0.00 40.68 0.86
423 425 8.644318 TTCTACAAGCCTTCTATATCGTTTTC 57.356 34.615 0.00 0.00 0.00 2.29
429 431 8.331742 CAAGCCTTCTATATCGTTTTCTTCTTC 58.668 37.037 0.00 0.00 0.00 2.87
430 432 7.556844 AGCCTTCTATATCGTTTTCTTCTTCA 58.443 34.615 0.00 0.00 0.00 3.02
434 436 7.419711 TCTATATCGTTTTCTTCTTCAGGGT 57.580 36.000 0.00 0.00 0.00 4.34
436 438 2.846193 TCGTTTTCTTCTTCAGGGTGG 58.154 47.619 0.00 0.00 0.00 4.61
447 449 0.546122 TCAGGGTGGCGATTTGCTAT 59.454 50.000 0.00 0.00 45.43 2.97
462 464 3.804786 TGCTATGCAATTCATGGTTGG 57.195 42.857 11.86 0.12 36.20 3.77
463 465 3.363627 TGCTATGCAATTCATGGTTGGA 58.636 40.909 11.86 10.01 36.20 3.53
464 466 3.382227 TGCTATGCAATTCATGGTTGGAG 59.618 43.478 11.86 2.63 36.20 3.86
465 467 3.243636 GCTATGCAATTCATGGTTGGAGG 60.244 47.826 11.86 8.33 36.20 4.30
486 488 5.862845 AGGCATCTTTTGATCTACATCGAT 58.137 37.500 0.00 0.00 36.97 3.59
496 498 3.079960 TCTACATCGATGACTTTCCGC 57.920 47.619 31.33 0.00 0.00 5.54
530 533 8.611654 TTTAGAAGCTCCTACGTTTAAACATT 57.388 30.769 18.07 6.89 0.00 2.71
534 537 9.059260 AGAAGCTCCTACGTTTAAACATTTTTA 57.941 29.630 18.07 0.95 0.00 1.52
557 560 1.079750 GTTGAGACGGAGGTCCAGC 60.080 63.158 0.00 0.00 44.54 4.85
569 572 3.003173 TCCAGCGGAGGGGACAAG 61.003 66.667 0.00 0.00 0.00 3.16
570 573 3.322466 CCAGCGGAGGGGACAAGT 61.322 66.667 0.00 0.00 0.00 3.16
581 584 1.338020 GGGGACAAGTTTTGCTCACAG 59.662 52.381 0.00 0.00 0.00 3.66
586 589 2.988942 AAGTTTTGCTCACAGCGCGC 62.989 55.000 26.66 26.66 46.26 6.86
588 591 1.958715 TTTTGCTCACAGCGCGCTA 60.959 52.632 36.02 18.49 46.26 4.26
591 594 3.333969 GCTCACAGCGCGCTATCC 61.334 66.667 36.02 16.41 0.00 2.59
602 606 1.004080 CGCTATCCTGGATGCAGGG 60.004 63.158 30.58 17.16 42.50 4.45
620 624 2.155279 GGGAGAAGAAGACTTTGGCAC 58.845 52.381 0.00 0.00 36.39 5.01
624 630 0.178961 AAGAAGACTTTGGCACCCCC 60.179 55.000 0.00 0.00 31.71 5.40
625 631 1.152830 GAAGACTTTGGCACCCCCA 59.847 57.895 0.00 0.00 43.51 4.96
652 658 8.953368 AGATTTGGATGCATTTCTAAATTTCC 57.047 30.769 11.51 1.63 37.05 3.13
667 673 8.710749 TCTAAATTTCCATAAGGATTGGGATG 57.289 34.615 0.00 0.00 45.26 3.51
676 683 6.986231 CCATAAGGATTGGGATGTTTTTAAGC 59.014 38.462 0.00 0.00 36.89 3.09
707 714 8.197439 GTGCTAATTAATTTATGACCTTTGGCT 58.803 33.333 5.91 0.00 0.00 4.75
801 888 1.064758 TGGGCCGACATATCAAAAGCT 60.065 47.619 0.00 0.00 0.00 3.74
807 894 6.151144 GGGCCGACATATCAAAAGCTTATTAT 59.849 38.462 0.00 0.00 0.00 1.28
840 946 0.752658 GTCCTAAATTGGGCCATGGC 59.247 55.000 29.47 29.47 41.06 4.40
841 947 0.754957 TCCTAAATTGGGCCATGGCG 60.755 55.000 29.90 13.48 43.06 5.69
909 1027 1.269998 CAGTTCGGTCGAAACTCTCCT 59.730 52.381 7.40 0.00 35.75 3.69
918 1036 3.508402 GTCGAAACTCTCCTCCTCTTTCT 59.492 47.826 0.00 0.00 0.00 2.52
1180 1305 1.153628 CCACGATTGGGACGAGACC 60.154 63.158 0.00 0.00 39.57 3.85
1211 1336 4.008933 GGGCGATCGATCCCCTGG 62.009 72.222 30.12 15.65 36.50 4.45
1213 1338 3.928779 GCGATCGATCCCCTGGCA 61.929 66.667 21.57 0.00 0.00 4.92
1217 1342 0.181350 GATCGATCCCCTGGCAAACT 59.819 55.000 14.76 0.00 0.00 2.66
1219 1344 1.198094 TCGATCCCCTGGCAAACTCA 61.198 55.000 0.00 0.00 0.00 3.41
1236 1364 7.023575 GCAAACTCATTTCAGTAATCGATTGT 58.976 34.615 20.87 4.97 0.00 2.71
1251 1379 2.671351 CGATTGTGTCTGGACTTACGCT 60.671 50.000 2.38 0.00 0.00 5.07
1274 1407 3.181520 GGGTGAATTGTTTCGAGTCGATG 60.182 47.826 17.34 0.00 35.23 3.84
1284 1417 3.586100 TCGAGTCGATGTTGGATTTGA 57.414 42.857 12.09 0.00 0.00 2.69
1293 1426 2.639065 TGTTGGATTTGATCGTAGCCC 58.361 47.619 0.00 0.00 0.00 5.19
1296 1429 1.230324 GGATTTGATCGTAGCCCTGC 58.770 55.000 0.00 0.00 0.00 4.85
1309 1442 3.339042 CCTGCAGGGGTCATGGAT 58.661 61.111 26.14 0.00 0.00 3.41
1322 1455 4.864247 GGGTCATGGATTTCGTGAAATTTG 59.136 41.667 9.06 7.94 42.45 2.32
1324 1457 6.155827 GGTCATGGATTTCGTGAAATTTGAA 58.844 36.000 9.06 0.00 42.45 2.69
1326 1459 6.640499 GTCATGGATTTCGTGAAATTTGAACA 59.360 34.615 9.06 5.17 42.45 3.18
1327 1460 7.168972 GTCATGGATTTCGTGAAATTTGAACAA 59.831 33.333 9.06 0.00 42.45 2.83
1328 1461 7.871973 TCATGGATTTCGTGAAATTTGAACAAT 59.128 29.630 9.06 0.00 40.77 2.71
1329 1462 8.497554 CATGGATTTCGTGAAATTTGAACAATT 58.502 29.630 9.06 0.00 40.77 2.32
1344 1477 9.705290 ATTTGAACAATTATTGGGTTTAGTGAC 57.295 29.630 9.88 0.00 34.12 3.67
1354 2449 5.401531 TGGGTTTAGTGACACTGATAGAC 57.598 43.478 18.58 5.34 0.00 2.59
1356 2451 5.542635 TGGGTTTAGTGACACTGATAGACTT 59.457 40.000 18.58 0.00 0.00 3.01
1359 2454 3.601443 AGTGACACTGATAGACTTGGC 57.399 47.619 7.47 0.00 0.00 4.52
1361 2456 3.324846 AGTGACACTGATAGACTTGGCAA 59.675 43.478 7.47 0.00 0.00 4.52
1368 2463 5.352569 CACTGATAGACTTGGCAAGGTTTAG 59.647 44.000 29.26 19.97 0.00 1.85
1369 2464 4.843728 TGATAGACTTGGCAAGGTTTAGG 58.156 43.478 29.26 5.53 0.00 2.69
1370 2465 1.911057 AGACTTGGCAAGGTTTAGGC 58.089 50.000 29.26 5.72 0.00 3.93
1379 2474 1.905637 AAGGTTTAGGCCTTGTTCGG 58.094 50.000 12.58 0.00 46.28 4.30
1380 2475 0.769247 AGGTTTAGGCCTTGTTCGGT 59.231 50.000 12.58 0.00 34.71 4.69
1381 2476 1.144298 AGGTTTAGGCCTTGTTCGGTT 59.856 47.619 12.58 0.00 34.71 4.44
1382 2477 2.372837 AGGTTTAGGCCTTGTTCGGTTA 59.627 45.455 12.58 0.00 34.71 2.85
1383 2478 2.745821 GGTTTAGGCCTTGTTCGGTTAG 59.254 50.000 12.58 0.00 0.00 2.34
1384 2479 2.745821 GTTTAGGCCTTGTTCGGTTAGG 59.254 50.000 12.58 0.00 0.00 2.69
1385 2480 0.906775 TAGGCCTTGTTCGGTTAGGG 59.093 55.000 12.58 0.00 0.00 3.53
1386 2481 0.838987 AGGCCTTGTTCGGTTAGGGA 60.839 55.000 0.00 0.00 0.00 4.20
1387 2482 0.392595 GGCCTTGTTCGGTTAGGGAG 60.393 60.000 0.00 0.00 0.00 4.30
1388 2483 0.392595 GCCTTGTTCGGTTAGGGAGG 60.393 60.000 0.00 0.00 0.00 4.30
1389 2484 0.252197 CCTTGTTCGGTTAGGGAGGG 59.748 60.000 0.00 0.00 0.00 4.30
1390 2485 0.981943 CTTGTTCGGTTAGGGAGGGT 59.018 55.000 0.00 0.00 0.00 4.34
1391 2486 1.350019 CTTGTTCGGTTAGGGAGGGTT 59.650 52.381 0.00 0.00 0.00 4.11
1392 2487 1.437397 TGTTCGGTTAGGGAGGGTTT 58.563 50.000 0.00 0.00 0.00 3.27
1393 2488 1.072648 TGTTCGGTTAGGGAGGGTTTG 59.927 52.381 0.00 0.00 0.00 2.93
1394 2489 0.694196 TTCGGTTAGGGAGGGTTTGG 59.306 55.000 0.00 0.00 0.00 3.28
1395 2490 0.178897 TCGGTTAGGGAGGGTTTGGA 60.179 55.000 0.00 0.00 0.00 3.53
1396 2491 0.252197 CGGTTAGGGAGGGTTTGGAG 59.748 60.000 0.00 0.00 0.00 3.86
1397 2492 1.665137 GGTTAGGGAGGGTTTGGAGA 58.335 55.000 0.00 0.00 0.00 3.71
1398 2493 1.560146 GGTTAGGGAGGGTTTGGAGAG 59.440 57.143 0.00 0.00 0.00 3.20
1399 2494 1.560146 GTTAGGGAGGGTTTGGAGAGG 59.440 57.143 0.00 0.00 0.00 3.69
1400 2495 0.797579 TAGGGAGGGTTTGGAGAGGT 59.202 55.000 0.00 0.00 0.00 3.85
1401 2496 0.103876 AGGGAGGGTTTGGAGAGGTT 60.104 55.000 0.00 0.00 0.00 3.50
1402 2497 0.778083 GGGAGGGTTTGGAGAGGTTT 59.222 55.000 0.00 0.00 0.00 3.27
1403 2498 1.547901 GGGAGGGTTTGGAGAGGTTTG 60.548 57.143 0.00 0.00 0.00 2.93
1404 2499 1.423921 GGAGGGTTTGGAGAGGTTTGA 59.576 52.381 0.00 0.00 0.00 2.69
1405 2500 2.158519 GGAGGGTTTGGAGAGGTTTGAA 60.159 50.000 0.00 0.00 0.00 2.69
1406 2501 3.562182 GAGGGTTTGGAGAGGTTTGAAA 58.438 45.455 0.00 0.00 0.00 2.69
1407 2502 3.566351 AGGGTTTGGAGAGGTTTGAAAG 58.434 45.455 0.00 0.00 0.00 2.62
1408 2503 2.628178 GGGTTTGGAGAGGTTTGAAAGG 59.372 50.000 0.00 0.00 0.00 3.11
1409 2504 2.628178 GGTTTGGAGAGGTTTGAAAGGG 59.372 50.000 0.00 0.00 0.00 3.95
1410 2505 3.562182 GTTTGGAGAGGTTTGAAAGGGA 58.438 45.455 0.00 0.00 0.00 4.20
1411 2506 4.152647 GTTTGGAGAGGTTTGAAAGGGAT 58.847 43.478 0.00 0.00 0.00 3.85
1412 2507 4.469469 TTGGAGAGGTTTGAAAGGGATT 57.531 40.909 0.00 0.00 0.00 3.01
1413 2508 5.592587 TTGGAGAGGTTTGAAAGGGATTA 57.407 39.130 0.00 0.00 0.00 1.75
1414 2509 5.592587 TGGAGAGGTTTGAAAGGGATTAA 57.407 39.130 0.00 0.00 0.00 1.40
1415 2510 5.959512 TGGAGAGGTTTGAAAGGGATTAAA 58.040 37.500 0.00 0.00 0.00 1.52
1416 2511 6.561294 TGGAGAGGTTTGAAAGGGATTAAAT 58.439 36.000 0.00 0.00 0.00 1.40
1417 2512 6.663523 TGGAGAGGTTTGAAAGGGATTAAATC 59.336 38.462 0.00 0.00 0.00 2.17
1430 2525 5.659440 GGATTAAATCCCTTGCAAGTCAA 57.341 39.130 24.35 10.08 43.88 3.18
1431 2526 6.036577 GGATTAAATCCCTTGCAAGTCAAA 57.963 37.500 24.35 10.27 43.88 2.69
1432 2527 6.463360 GGATTAAATCCCTTGCAAGTCAAAA 58.537 36.000 24.35 11.23 43.88 2.44
1433 2528 7.105588 GGATTAAATCCCTTGCAAGTCAAAAT 58.894 34.615 24.35 14.96 43.88 1.82
1434 2529 7.278646 GGATTAAATCCCTTGCAAGTCAAAATC 59.721 37.037 24.35 20.70 43.88 2.17
1435 2530 5.813513 AAATCCCTTGCAAGTCAAAATCT 57.186 34.783 24.35 0.00 33.65 2.40
1436 2531 5.397142 AATCCCTTGCAAGTCAAAATCTC 57.603 39.130 24.35 0.00 33.65 2.75
1437 2532 3.157087 TCCCTTGCAAGTCAAAATCTCC 58.843 45.455 24.35 0.00 33.65 3.71
1438 2533 3.160269 CCCTTGCAAGTCAAAATCTCCT 58.840 45.455 24.35 0.00 33.65 3.69
1439 2534 3.575687 CCCTTGCAAGTCAAAATCTCCTT 59.424 43.478 24.35 0.00 33.65 3.36
1440 2535 4.321527 CCCTTGCAAGTCAAAATCTCCTTC 60.322 45.833 24.35 0.00 33.65 3.46
1441 2536 4.279169 CCTTGCAAGTCAAAATCTCCTTCA 59.721 41.667 24.35 0.00 33.65 3.02
1442 2537 5.221303 CCTTGCAAGTCAAAATCTCCTTCAA 60.221 40.000 24.35 0.00 33.65 2.69
1443 2538 6.409524 TTGCAAGTCAAAATCTCCTTCAAT 57.590 33.333 0.00 0.00 0.00 2.57
1444 2539 6.017400 TGCAAGTCAAAATCTCCTTCAATC 57.983 37.500 0.00 0.00 0.00 2.67
1445 2540 5.047802 TGCAAGTCAAAATCTCCTTCAATCC 60.048 40.000 0.00 0.00 0.00 3.01
1446 2541 5.623141 GCAAGTCAAAATCTCCTTCAATCCC 60.623 44.000 0.00 0.00 0.00 3.85
1447 2542 5.527026 AGTCAAAATCTCCTTCAATCCCT 57.473 39.130 0.00 0.00 0.00 4.20
1448 2543 5.896963 AGTCAAAATCTCCTTCAATCCCTT 58.103 37.500 0.00 0.00 0.00 3.95
1449 2544 6.318112 AGTCAAAATCTCCTTCAATCCCTTT 58.682 36.000 0.00 0.00 0.00 3.11
1450 2545 6.210185 AGTCAAAATCTCCTTCAATCCCTTTG 59.790 38.462 0.00 0.00 36.61 2.77
1451 2546 5.481473 TCAAAATCTCCTTCAATCCCTTTGG 59.519 40.000 0.00 0.00 35.92 3.28
1452 2547 4.682021 AATCTCCTTCAATCCCTTTGGT 57.318 40.909 0.00 0.00 35.92 3.67
1453 2548 3.439857 TCTCCTTCAATCCCTTTGGTG 57.560 47.619 0.00 0.00 35.92 4.17
1454 2549 2.986019 TCTCCTTCAATCCCTTTGGTGA 59.014 45.455 0.00 0.00 35.92 4.02
1455 2550 3.009473 TCTCCTTCAATCCCTTTGGTGAG 59.991 47.826 0.00 0.00 35.92 3.51
1482 2582 3.692101 TCAGAATCACCGAAGAGTCTCTC 59.308 47.826 1.96 0.00 40.61 3.20
1489 2589 1.268488 CCGAAGAGTCTCTCGCTGATG 60.268 57.143 1.96 3.05 35.36 3.07
1494 2594 3.221771 AGAGTCTCTCGCTGATGCTTAT 58.778 45.455 0.00 0.00 35.36 1.73
1495 2595 3.636300 AGAGTCTCTCGCTGATGCTTATT 59.364 43.478 0.00 0.00 35.36 1.40
1509 2609 5.586243 TGATGCTTATTAAGAACTGTGGCTC 59.414 40.000 7.63 0.00 0.00 4.70
1543 2643 3.072330 TGCAACTGTCCATCCTAGTGAAA 59.928 43.478 0.00 0.00 0.00 2.69
1549 2649 1.207089 TCCATCCTAGTGAAAGTGCCG 59.793 52.381 0.00 0.00 0.00 5.69
1575 2675 3.419915 CATTTTCATCGTCAAAGCCTCG 58.580 45.455 0.00 0.00 0.00 4.63
1577 2677 1.996292 TTCATCGTCAAAGCCTCGAG 58.004 50.000 5.13 5.13 37.04 4.04
1579 2679 1.133216 TCATCGTCAAAGCCTCGAGAG 59.867 52.381 15.71 5.19 37.04 3.20
1595 2695 6.210287 CTCGAGAGGATAGTTGGTTAGTTT 57.790 41.667 6.58 0.00 0.00 2.66
1596 2696 6.205101 TCGAGAGGATAGTTGGTTAGTTTC 57.795 41.667 0.00 0.00 0.00 2.78
1597 2697 5.035443 CGAGAGGATAGTTGGTTAGTTTCG 58.965 45.833 0.00 0.00 0.00 3.46
1600 2910 5.715753 AGAGGATAGTTGGTTAGTTTCGAGT 59.284 40.000 0.00 0.00 0.00 4.18
1611 2921 5.924825 GGTTAGTTTCGAGTAAGAGCAGAAA 59.075 40.000 0.00 0.00 0.00 2.52
1614 2924 4.932200 AGTTTCGAGTAAGAGCAGAAATGG 59.068 41.667 0.00 0.00 34.05 3.16
1615 2925 3.526931 TCGAGTAAGAGCAGAAATGGG 57.473 47.619 0.00 0.00 0.00 4.00
1619 2929 2.912956 AGTAAGAGCAGAAATGGGTGGA 59.087 45.455 0.00 0.00 0.00 4.02
1628 2938 4.455606 CAGAAATGGGTGGAATCTAGGAC 58.544 47.826 0.00 0.00 0.00 3.85
1631 2941 0.325296 TGGGTGGAATCTAGGACGCT 60.325 55.000 0.00 0.00 0.00 5.07
1634 2944 1.757699 GGTGGAATCTAGGACGCTTCT 59.242 52.381 0.00 0.00 0.00 2.85
1635 2945 2.482142 GGTGGAATCTAGGACGCTTCTG 60.482 54.545 0.00 0.00 0.00 3.02
1636 2946 2.166664 GTGGAATCTAGGACGCTTCTGT 59.833 50.000 0.00 0.00 0.00 3.41
1638 2948 3.260884 TGGAATCTAGGACGCTTCTGTTT 59.739 43.478 0.00 0.00 0.00 2.83
1639 2949 4.254492 GGAATCTAGGACGCTTCTGTTTT 58.746 43.478 0.00 0.00 0.00 2.43
1640 2950 4.330347 GGAATCTAGGACGCTTCTGTTTTC 59.670 45.833 0.00 0.00 0.00 2.29
1649 2959 5.230097 GGACGCTTCTGTTTTCTTTTTCTTG 59.770 40.000 0.00 0.00 0.00 3.02
1651 2961 6.386654 ACGCTTCTGTTTTCTTTTTCTTGAA 58.613 32.000 0.00 0.00 0.00 2.69
1659 2969 6.035542 TGTTTTCTTTTTCTTGAATTCACGCC 59.964 34.615 7.89 0.00 0.00 5.68
1661 2971 5.108385 TCTTTTTCTTGAATTCACGCCTC 57.892 39.130 7.89 0.00 0.00 4.70
1664 2974 2.099141 TCTTGAATTCACGCCTCCAG 57.901 50.000 7.89 0.97 0.00 3.86
1670 2980 1.742761 ATTCACGCCTCCAGTTGATG 58.257 50.000 0.00 0.00 0.00 3.07
1672 2982 1.672030 CACGCCTCCAGTTGATGCA 60.672 57.895 0.00 0.00 34.59 3.96
1680 2990 2.429971 CTCCAGTTGATGCAGAGAGCTA 59.570 50.000 0.00 0.00 45.94 3.32
1685 2995 4.983538 CAGTTGATGCAGAGAGCTACATAG 59.016 45.833 0.00 0.00 45.94 2.23
1726 3036 4.829064 TTTTCCCGTCACAGATTTGAAG 57.171 40.909 0.00 0.00 0.00 3.02
1727 3037 1.808411 TCCCGTCACAGATTTGAAGC 58.192 50.000 0.00 0.00 0.00 3.86
1728 3038 1.071542 TCCCGTCACAGATTTGAAGCA 59.928 47.619 0.00 0.00 0.00 3.91
1778 3088 8.006298 TGAAAACAAAATCACTATGACCTGTT 57.994 30.769 0.00 0.00 31.31 3.16
1780 3090 6.575162 AACAAAATCACTATGACCTGTTCC 57.425 37.500 0.00 0.00 0.00 3.62
1790 3109 1.906574 TGACCTGTTCCATACCTGACC 59.093 52.381 0.00 0.00 0.00 4.02
1803 3122 1.669115 CTGACCGCACAACCCTGAG 60.669 63.158 0.00 0.00 0.00 3.35
1821 3140 2.700371 TGAGAAAGTTGAGCTGTGGAGA 59.300 45.455 0.00 0.00 0.00 3.71
1845 3164 4.341806 TCCATGAGCAACTTGTTTTGATGT 59.658 37.500 0.00 0.00 0.00 3.06
2059 3379 3.118920 CCATGTACGAGTTGTATGACCCA 60.119 47.826 0.00 0.00 35.02 4.51
2267 3587 2.676342 CGTTACTAGGCCATTTGTGTCC 59.324 50.000 5.01 0.00 0.00 4.02
2315 3635 5.581085 GCGTATTCTGTCAGGTAAAATGTCT 59.419 40.000 0.00 0.00 0.00 3.41
2316 3636 6.455646 GCGTATTCTGTCAGGTAAAATGTCTG 60.456 42.308 0.00 0.00 0.00 3.51
2324 3644 5.934625 GTCAGGTAAAATGTCTGTGATCACT 59.065 40.000 25.55 6.32 0.00 3.41
2328 3648 5.122396 GGTAAAATGTCTGTGATCACTGGTC 59.878 44.000 26.61 20.59 0.00 4.02
2330 3650 4.356405 AATGTCTGTGATCACTGGTCAA 57.644 40.909 26.61 13.71 0.00 3.18
2331 3651 3.111853 TGTCTGTGATCACTGGTCAAC 57.888 47.619 26.61 19.17 0.00 3.18
2332 3652 2.061773 GTCTGTGATCACTGGTCAACG 58.938 52.381 26.61 7.47 0.00 4.10
2360 3680 3.005791 ACCCTTAATGCAAACTGTGAAGC 59.994 43.478 0.00 0.00 0.00 3.86
2363 3683 4.860907 CCTTAATGCAAACTGTGAAGCATC 59.139 41.667 13.01 0.00 46.10 3.91
2391 3711 2.672961 TCCAGTCTTGTATCTTGGCG 57.327 50.000 0.00 0.00 0.00 5.69
2410 3730 3.738282 GGCGTCTCATAAGCATCTGTAAG 59.262 47.826 0.00 0.00 33.76 2.34
2437 3757 3.309682 TCGATGATTGTTCGAAATGCTCC 59.690 43.478 0.00 0.00 42.21 4.70
2439 3759 4.260907 CGATGATTGTTCGAAATGCTCCAT 60.261 41.667 0.00 0.00 38.88 3.41
2505 3834 6.500684 TGAGTTGCTGAATCCTATTTTGTC 57.499 37.500 0.00 0.00 0.00 3.18
2507 3836 6.372659 TGAGTTGCTGAATCCTATTTTGTCTC 59.627 38.462 0.00 0.00 0.00 3.36
2674 4467 6.183360 CCATGAATTCCTGAAGCATTGATCTT 60.183 38.462 11.84 0.00 0.00 2.40
2701 4494 9.256477 CCGTGCTAATAATTATTGACTGTTCTA 57.744 33.333 18.98 0.00 0.00 2.10
2771 4567 2.975851 GCTTGCTTTGTTGTCGATTCAG 59.024 45.455 0.00 0.00 0.00 3.02
2775 4571 5.437289 TGCTTTGTTGTCGATTCAGAAAT 57.563 34.783 0.00 0.00 0.00 2.17
2778 4574 5.566774 GCTTTGTTGTCGATTCAGAAATCTG 59.433 40.000 3.99 3.99 45.08 2.90
2788 4584 7.218963 GTCGATTCAGAAATCTGCAATTTAACC 59.781 37.037 5.53 0.00 43.46 2.85
2816 4612 3.752222 AGGTGAATATCGTAGCTCGTAGG 59.248 47.826 0.00 0.00 40.80 3.18
2828 4624 2.946329 AGCTCGTAGGTGTACTGATCAG 59.054 50.000 21.37 21.37 0.00 2.90
2841 4637 7.427214 GTGTACTGATCAGGACCTAGTAATTC 58.573 42.308 31.00 6.76 41.64 2.17
2855 4651 7.918076 ACCTAGTAATTCATCTCTTGAACCAA 58.082 34.615 0.00 0.00 46.80 3.67
2857 4653 9.401058 CCTAGTAATTCATCTCTTGAACCAAAT 57.599 33.333 0.00 0.00 46.80 2.32
2871 4667 8.041323 TCTTGAACCAAATAGGAGAGTTGTATC 58.959 37.037 0.00 0.00 41.22 2.24
2875 4671 5.189145 ACCAAATAGGAGAGTTGTATCCGTT 59.811 40.000 0.00 0.00 39.28 4.44
2876 4672 6.381994 ACCAAATAGGAGAGTTGTATCCGTTA 59.618 38.462 0.00 0.00 39.28 3.18
2877 4673 6.924060 CCAAATAGGAGAGTTGTATCCGTTAG 59.076 42.308 0.00 0.00 39.28 2.34
2878 4674 7.201884 CCAAATAGGAGAGTTGTATCCGTTAGA 60.202 40.741 0.00 0.00 39.28 2.10
2879 4675 8.361139 CAAATAGGAGAGTTGTATCCGTTAGAT 58.639 37.037 0.00 0.00 39.28 1.98
2880 4676 9.584008 AAATAGGAGAGTTGTATCCGTTAGATA 57.416 33.333 0.00 0.00 39.28 1.98
2881 4677 8.795842 ATAGGAGAGTTGTATCCGTTAGATAG 57.204 38.462 0.00 0.00 39.28 2.08
2882 4678 6.839454 AGGAGAGTTGTATCCGTTAGATAGA 58.161 40.000 0.00 0.00 39.28 1.98
2883 4679 7.288560 AGGAGAGTTGTATCCGTTAGATAGAA 58.711 38.462 0.00 0.00 39.28 2.10
2884 4680 7.778853 AGGAGAGTTGTATCCGTTAGATAGAAA 59.221 37.037 0.00 0.00 41.10 2.52
2885 4681 8.077386 GGAGAGTTGTATCCGTTAGATAGAAAG 58.923 40.741 0.00 0.00 41.10 2.62
2886 4682 8.749026 AGAGTTGTATCCGTTAGATAGAAAGA 57.251 34.615 0.00 0.00 41.10 2.52
2887 4683 9.186837 AGAGTTGTATCCGTTAGATAGAAAGAA 57.813 33.333 0.00 0.00 41.10 2.52
2888 4684 9.798994 GAGTTGTATCCGTTAGATAGAAAGAAA 57.201 33.333 0.00 0.00 41.10 2.52
2940 4881 0.400594 AATAATCTACTGGGCGGGCC 59.599 55.000 14.65 14.65 0.00 5.80
2941 4882 0.766674 ATAATCTACTGGGCGGGCCA 60.767 55.000 22.99 22.99 37.98 5.36
2942 4883 1.407656 TAATCTACTGGGCGGGCCAG 61.408 60.000 39.67 39.67 40.72 4.85
2944 4885 4.162690 CTACTGGGCGGGCCAGAC 62.163 72.222 45.33 2.41 38.52 3.51
2945 4886 4.715130 TACTGGGCGGGCCAGACT 62.715 66.667 45.33 31.03 38.52 3.24
2955 4896 2.753029 GCCAGACTGAGGCCTTGT 59.247 61.111 6.77 9.72 46.50 3.16
2956 4897 1.073897 GCCAGACTGAGGCCTTGTT 59.926 57.895 6.77 0.00 46.50 2.83
2957 4898 0.957888 GCCAGACTGAGGCCTTGTTC 60.958 60.000 6.77 3.19 46.50 3.18
2958 4899 0.671781 CCAGACTGAGGCCTTGTTCG 60.672 60.000 6.77 4.75 0.00 3.95
2959 4900 0.671781 CAGACTGAGGCCTTGTTCGG 60.672 60.000 6.77 0.92 0.00 4.30
2960 4901 1.122019 AGACTGAGGCCTTGTTCGGT 61.122 55.000 6.77 5.05 35.69 4.69
2961 4902 0.250338 GACTGAGGCCTTGTTCGGTT 60.250 55.000 6.77 0.00 33.23 4.44
2962 4903 1.001633 GACTGAGGCCTTGTTCGGTTA 59.998 52.381 6.77 0.00 33.23 2.85
2963 4904 1.270678 ACTGAGGCCTTGTTCGGTTAC 60.271 52.381 6.77 0.00 28.71 2.50
2964 4905 0.759959 TGAGGCCTTGTTCGGTTACA 59.240 50.000 6.77 0.00 0.00 2.41
2965 4906 1.154197 GAGGCCTTGTTCGGTTACAC 58.846 55.000 6.77 0.00 0.00 2.90
2966 4907 0.250597 AGGCCTTGTTCGGTTACACC 60.251 55.000 0.00 0.00 34.05 4.16
2967 4908 0.250597 GGCCTTGTTCGGTTACACCT 60.251 55.000 0.00 0.00 35.66 4.00
2968 4909 1.154197 GCCTTGTTCGGTTACACCTC 58.846 55.000 0.00 0.00 35.66 3.85
2969 4910 1.270678 GCCTTGTTCGGTTACACCTCT 60.271 52.381 0.00 0.00 35.66 3.69
2970 4911 2.809299 GCCTTGTTCGGTTACACCTCTT 60.809 50.000 0.00 0.00 35.66 2.85
2971 4912 2.806244 CCTTGTTCGGTTACACCTCTTG 59.194 50.000 0.00 0.00 35.66 3.02
2972 4913 3.463944 CTTGTTCGGTTACACCTCTTGT 58.536 45.455 0.00 0.00 42.84 3.16
2987 4928 3.988976 TCTTGTGAAGAGGATTGGAGG 57.011 47.619 0.00 0.00 32.71 4.30
2988 4929 2.573462 TCTTGTGAAGAGGATTGGAGGG 59.427 50.000 0.00 0.00 32.71 4.30
2989 4930 1.289160 TGTGAAGAGGATTGGAGGGG 58.711 55.000 0.00 0.00 0.00 4.79
2990 4931 1.203428 TGTGAAGAGGATTGGAGGGGA 60.203 52.381 0.00 0.00 0.00 4.81
2991 4932 2.131023 GTGAAGAGGATTGGAGGGGAT 58.869 52.381 0.00 0.00 0.00 3.85
2992 4933 2.511637 GTGAAGAGGATTGGAGGGGATT 59.488 50.000 0.00 0.00 0.00 3.01
2993 4934 3.053320 GTGAAGAGGATTGGAGGGGATTT 60.053 47.826 0.00 0.00 0.00 2.17
2994 4935 3.053395 TGAAGAGGATTGGAGGGGATTTG 60.053 47.826 0.00 0.00 0.00 2.32
2995 4936 1.855599 AGAGGATTGGAGGGGATTTGG 59.144 52.381 0.00 0.00 0.00 3.28
2996 4937 0.936691 AGGATTGGAGGGGATTTGGG 59.063 55.000 0.00 0.00 0.00 4.12
2997 4938 0.636647 GGATTGGAGGGGATTTGGGT 59.363 55.000 0.00 0.00 0.00 4.51
2998 4939 1.689258 GGATTGGAGGGGATTTGGGTG 60.689 57.143 0.00 0.00 0.00 4.61
2999 4940 0.339510 ATTGGAGGGGATTTGGGTGG 59.660 55.000 0.00 0.00 0.00 4.61
3000 4941 0.778078 TTGGAGGGGATTTGGGTGGA 60.778 55.000 0.00 0.00 0.00 4.02
3001 4942 0.554865 TGGAGGGGATTTGGGTGGAT 60.555 55.000 0.00 0.00 0.00 3.41
3002 4943 0.636647 GGAGGGGATTTGGGTGGATT 59.363 55.000 0.00 0.00 0.00 3.01
3003 4944 1.008327 GGAGGGGATTTGGGTGGATTT 59.992 52.381 0.00 0.00 0.00 2.17
3004 4945 2.561984 GGAGGGGATTTGGGTGGATTTT 60.562 50.000 0.00 0.00 0.00 1.82
3005 4946 2.501316 GAGGGGATTTGGGTGGATTTTG 59.499 50.000 0.00 0.00 0.00 2.44
3006 4947 2.113414 AGGGGATTTGGGTGGATTTTGA 59.887 45.455 0.00 0.00 0.00 2.69
3007 4948 2.236146 GGGGATTTGGGTGGATTTTGAC 59.764 50.000 0.00 0.00 0.00 3.18
3008 4949 3.173151 GGGATTTGGGTGGATTTTGACT 58.827 45.455 0.00 0.00 0.00 3.41
3009 4950 3.582647 GGGATTTGGGTGGATTTTGACTT 59.417 43.478 0.00 0.00 0.00 3.01
3010 4951 4.563374 GGGATTTGGGTGGATTTTGACTTG 60.563 45.833 0.00 0.00 0.00 3.16
3011 4952 4.040339 GGATTTGGGTGGATTTTGACTTGT 59.960 41.667 0.00 0.00 0.00 3.16
3012 4953 5.245075 GGATTTGGGTGGATTTTGACTTGTA 59.755 40.000 0.00 0.00 0.00 2.41
3013 4954 6.239458 GGATTTGGGTGGATTTTGACTTGTAA 60.239 38.462 0.00 0.00 0.00 2.41
3014 4955 5.782893 TTGGGTGGATTTTGACTTGTAAG 57.217 39.130 0.00 0.00 0.00 2.34
3015 4956 5.055265 TGGGTGGATTTTGACTTGTAAGA 57.945 39.130 0.00 0.00 0.00 2.10
3016 4957 5.070001 TGGGTGGATTTTGACTTGTAAGAG 58.930 41.667 0.00 0.00 0.00 2.85
3017 4958 5.163141 TGGGTGGATTTTGACTTGTAAGAGA 60.163 40.000 0.00 0.00 0.00 3.10
3018 4959 5.946377 GGGTGGATTTTGACTTGTAAGAGAT 59.054 40.000 0.00 0.00 0.00 2.75
3019 4960 6.434340 GGGTGGATTTTGACTTGTAAGAGATT 59.566 38.462 0.00 0.00 0.00 2.40
3020 4961 7.610305 GGGTGGATTTTGACTTGTAAGAGATTA 59.390 37.037 0.00 0.00 0.00 1.75
3021 4962 9.178758 GGTGGATTTTGACTTGTAAGAGATTAT 57.821 33.333 0.00 0.00 0.00 1.28
3028 4969 9.832445 TTTGACTTGTAAGAGATTATATCCACC 57.168 33.333 0.00 0.00 0.00 4.61
3029 4970 8.783660 TGACTTGTAAGAGATTATATCCACCT 57.216 34.615 0.00 0.00 0.00 4.00
3030 4971 8.861086 TGACTTGTAAGAGATTATATCCACCTC 58.139 37.037 0.00 0.00 0.00 3.85
3031 4972 8.783660 ACTTGTAAGAGATTATATCCACCTCA 57.216 34.615 0.00 0.00 0.00 3.86
3032 4973 9.213777 ACTTGTAAGAGATTATATCCACCTCAA 57.786 33.333 0.00 0.00 0.00 3.02
3034 4975 9.832445 TTGTAAGAGATTATATCCACCTCAAAC 57.168 33.333 0.00 0.00 0.00 2.93
3035 4976 9.213777 TGTAAGAGATTATATCCACCTCAAACT 57.786 33.333 0.00 0.00 0.00 2.66
3036 4977 9.699703 GTAAGAGATTATATCCACCTCAAACTC 57.300 37.037 0.00 0.00 0.00 3.01
3037 4978 8.560124 AAGAGATTATATCCACCTCAAACTCT 57.440 34.615 0.00 0.00 0.00 3.24
3038 4979 7.961351 AGAGATTATATCCACCTCAAACTCTG 58.039 38.462 0.00 0.00 0.00 3.35
3039 4980 6.529220 AGATTATATCCACCTCAAACTCTGC 58.471 40.000 0.00 0.00 0.00 4.26
3040 4981 3.567478 ATATCCACCTCAAACTCTGCC 57.433 47.619 0.00 0.00 0.00 4.85
3041 4982 1.067295 ATCCACCTCAAACTCTGCCA 58.933 50.000 0.00 0.00 0.00 4.92
3042 4983 0.843309 TCCACCTCAAACTCTGCCAA 59.157 50.000 0.00 0.00 0.00 4.52
3043 4984 1.214175 TCCACCTCAAACTCTGCCAAA 59.786 47.619 0.00 0.00 0.00 3.28
3044 4985 1.338020 CCACCTCAAACTCTGCCAAAC 59.662 52.381 0.00 0.00 0.00 2.93
3045 4986 1.338020 CACCTCAAACTCTGCCAAACC 59.662 52.381 0.00 0.00 0.00 3.27
3046 4987 0.961753 CCTCAAACTCTGCCAAACCC 59.038 55.000 0.00 0.00 0.00 4.11
3047 4988 0.961753 CTCAAACTCTGCCAAACCCC 59.038 55.000 0.00 0.00 0.00 4.95
3048 4989 0.555769 TCAAACTCTGCCAAACCCCT 59.444 50.000 0.00 0.00 0.00 4.79
3049 4990 0.961753 CAAACTCTGCCAAACCCCTC 59.038 55.000 0.00 0.00 0.00 4.30
3050 4991 0.178961 AAACTCTGCCAAACCCCTCC 60.179 55.000 0.00 0.00 0.00 4.30
3051 4992 1.068352 AACTCTGCCAAACCCCTCCT 61.068 55.000 0.00 0.00 0.00 3.69
3052 4993 0.178873 ACTCTGCCAAACCCCTCCTA 60.179 55.000 0.00 0.00 0.00 2.94
3053 4994 0.991920 CTCTGCCAAACCCCTCCTAA 59.008 55.000 0.00 0.00 0.00 2.69
3054 4995 1.354368 CTCTGCCAAACCCCTCCTAAA 59.646 52.381 0.00 0.00 0.00 1.85
3055 4996 2.000048 TCTGCCAAACCCCTCCTAAAT 59.000 47.619 0.00 0.00 0.00 1.40
3056 4997 2.025321 TCTGCCAAACCCCTCCTAAATC 60.025 50.000 0.00 0.00 0.00 2.17
3057 4998 1.006639 TGCCAAACCCCTCCTAAATCC 59.993 52.381 0.00 0.00 0.00 3.01
3058 4999 1.688311 GCCAAACCCCTCCTAAATCCC 60.688 57.143 0.00 0.00 0.00 3.85
3059 5000 1.930204 CCAAACCCCTCCTAAATCCCT 59.070 52.381 0.00 0.00 0.00 4.20
3060 5001 2.358195 CCAAACCCCTCCTAAATCCCTG 60.358 54.545 0.00 0.00 0.00 4.45
3061 5002 2.311841 CAAACCCCTCCTAAATCCCTGT 59.688 50.000 0.00 0.00 0.00 4.00
3062 5003 1.894699 ACCCCTCCTAAATCCCTGTC 58.105 55.000 0.00 0.00 0.00 3.51
3063 5004 1.082194 ACCCCTCCTAAATCCCTGTCA 59.918 52.381 0.00 0.00 0.00 3.58
3064 5005 2.205342 CCCCTCCTAAATCCCTGTCAA 58.795 52.381 0.00 0.00 0.00 3.18
3065 5006 2.092375 CCCCTCCTAAATCCCTGTCAAC 60.092 54.545 0.00 0.00 0.00 3.18
3066 5007 2.092375 CCCTCCTAAATCCCTGTCAACC 60.092 54.545 0.00 0.00 0.00 3.77
3067 5008 2.420129 CCTCCTAAATCCCTGTCAACCG 60.420 54.545 0.00 0.00 0.00 4.44
3068 5009 2.500098 CTCCTAAATCCCTGTCAACCGA 59.500 50.000 0.00 0.00 0.00 4.69
3069 5010 2.907696 TCCTAAATCCCTGTCAACCGAA 59.092 45.455 0.00 0.00 0.00 4.30
3070 5011 3.007635 CCTAAATCCCTGTCAACCGAAC 58.992 50.000 0.00 0.00 0.00 3.95
3071 5012 2.649531 AAATCCCTGTCAACCGAACA 57.350 45.000 0.00 0.00 0.00 3.18
3072 5013 2.649531 AATCCCTGTCAACCGAACAA 57.350 45.000 0.00 0.00 0.00 2.83
3073 5014 2.185004 ATCCCTGTCAACCGAACAAG 57.815 50.000 0.00 0.00 0.00 3.16
3074 5015 0.107831 TCCCTGTCAACCGAACAAGG 59.892 55.000 0.00 0.00 30.76 3.61
3075 5016 1.515521 CCCTGTCAACCGAACAAGGC 61.516 60.000 0.00 0.00 33.69 4.35
3076 5017 1.515521 CCTGTCAACCGAACAAGGCC 61.516 60.000 0.00 0.00 33.69 5.19
3077 5018 0.535102 CTGTCAACCGAACAAGGCCT 60.535 55.000 0.00 0.00 33.69 5.19
3078 5019 0.759959 TGTCAACCGAACAAGGCCTA 59.240 50.000 5.16 0.00 33.69 3.93
3136 5077 0.765510 ACCCCCACTTCTCACTGTTC 59.234 55.000 0.00 0.00 0.00 3.18
3187 5128 1.152694 TTCTGCATATGGGCTGGGC 60.153 57.895 4.56 0.00 33.99 5.36
3188 5129 1.935612 TTCTGCATATGGGCTGGGCA 61.936 55.000 4.56 0.00 33.99 5.36
3189 5130 1.901948 CTGCATATGGGCTGGGCAG 60.902 63.158 4.56 0.00 44.91 4.85
3190 5131 2.599578 GCATATGGGCTGGGCAGG 60.600 66.667 4.56 0.00 0.00 4.85
3191 5132 3.137385 GCATATGGGCTGGGCAGGA 62.137 63.158 4.56 0.00 0.00 3.86
3224 5165 3.629858 GCCCTAAGCGCAAAATCTG 57.370 52.632 11.47 0.00 0.00 2.90
3282 6682 0.671796 ACGACCACGACAACATGAGA 59.328 50.000 0.00 0.00 42.66 3.27
3297 6697 1.301322 GAGAGCAATCCTAGCCCGC 60.301 63.158 0.00 0.00 0.00 6.13
3404 6804 1.836158 CCCACCCAAACATGCACCA 60.836 57.895 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.678395 CGGCAGAGTAGATGATGGCT 59.322 55.000 0.00 0.00 36.18 4.75
34 35 1.101635 CGGACCGGCAGAGTAGATGA 61.102 60.000 5.81 0.00 0.00 2.92
40 41 4.003788 CCAACGGACCGGCAGAGT 62.004 66.667 20.00 0.00 0.00 3.24
50 51 1.003112 GCATACCCACACCAACGGA 60.003 57.895 0.00 0.00 0.00 4.69
51 52 2.395360 CGCATACCCACACCAACGG 61.395 63.158 0.00 0.00 0.00 4.44
55 57 4.418328 GCCCGCATACCCACACCA 62.418 66.667 0.00 0.00 0.00 4.17
74 76 1.871080 CCTCATCGGTAGATTGGTGC 58.129 55.000 0.00 0.00 34.23 5.01
75 77 1.414181 AGCCTCATCGGTAGATTGGTG 59.586 52.381 0.00 0.00 34.23 4.17
79 81 2.766263 TGACAAGCCTCATCGGTAGATT 59.234 45.455 0.00 0.00 34.23 2.40
87 89 2.428530 GGGGAAAATGACAAGCCTCATC 59.571 50.000 0.00 0.00 30.12 2.92
90 92 2.095461 GAGGGGAAAATGACAAGCCTC 58.905 52.381 0.00 0.00 0.00 4.70
91 93 1.713078 AGAGGGGAAAATGACAAGCCT 59.287 47.619 0.00 0.00 0.00 4.58
95 97 3.439857 CCAGAGAGGGGAAAATGACAA 57.560 47.619 0.00 0.00 0.00 3.18
113 115 0.986019 AGACCATATTGCCCGACCCA 60.986 55.000 0.00 0.00 0.00 4.51
120 122 1.251251 GGCATGGAGACCATATTGCC 58.749 55.000 15.08 15.08 45.79 4.52
128 130 1.566298 AAGGGTGAGGCATGGAGACC 61.566 60.000 0.00 0.00 0.00 3.85
136 138 2.503765 TCATCGAAATAAGGGTGAGGCA 59.496 45.455 0.00 0.00 0.00 4.75
142 144 5.930135 AGTAAGCATCATCGAAATAAGGGT 58.070 37.500 0.00 0.00 0.00 4.34
148 150 6.447162 TGATACGAGTAAGCATCATCGAAAT 58.553 36.000 8.15 2.41 38.50 2.17
175 177 2.225650 ACACTATCTTCCACACCCTCCT 60.226 50.000 0.00 0.00 0.00 3.69
176 178 2.093447 CACACTATCTTCCACACCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
177 179 2.567615 ACACACTATCTTCCACACCCTC 59.432 50.000 0.00 0.00 0.00 4.30
178 180 2.567615 GACACACTATCTTCCACACCCT 59.432 50.000 0.00 0.00 0.00 4.34
179 181 2.567615 AGACACACTATCTTCCACACCC 59.432 50.000 0.00 0.00 0.00 4.61
180 182 3.963428 AGACACACTATCTTCCACACC 57.037 47.619 0.00 0.00 0.00 4.16
187 189 9.646427 GAACTAGAAATGAAGACACACTATCTT 57.354 33.333 0.00 0.00 39.15 2.40
191 193 6.868864 GCAGAACTAGAAATGAAGACACACTA 59.131 38.462 0.00 0.00 0.00 2.74
193 195 5.466728 TGCAGAACTAGAAATGAAGACACAC 59.533 40.000 0.00 0.00 0.00 3.82
194 196 5.610398 TGCAGAACTAGAAATGAAGACACA 58.390 37.500 0.00 0.00 0.00 3.72
204 206 6.959639 AAATCCAAACTGCAGAACTAGAAA 57.040 33.333 23.35 0.00 0.00 2.52
205 207 6.959639 AAAATCCAAACTGCAGAACTAGAA 57.040 33.333 23.35 0.00 0.00 2.10
246 248 8.282592 TGTTCACTCTTCAAGACAATTTAATCG 58.717 33.333 0.00 0.00 0.00 3.34
250 252 8.902806 ACATTGTTCACTCTTCAAGACAATTTA 58.097 29.630 0.00 0.00 0.00 1.40
262 264 6.228258 ACGTATAACCACATTGTTCACTCTT 58.772 36.000 0.00 0.00 0.00 2.85
263 265 5.790593 ACGTATAACCACATTGTTCACTCT 58.209 37.500 0.00 0.00 0.00 3.24
281 283 0.175073 GCCGGAAGACCAAGACGTAT 59.825 55.000 5.05 0.00 35.59 3.06
285 287 2.347731 CTAAAGCCGGAAGACCAAGAC 58.652 52.381 5.05 0.00 35.59 3.01
292 294 1.515954 CGGAGCTAAAGCCGGAAGA 59.484 57.895 5.05 0.00 43.67 2.87
303 305 1.888018 CCTTCGTGGTTCGGAGCTA 59.112 57.895 0.00 0.00 43.29 3.32
343 345 1.003545 CACAAACCTCAACACGCTCTG 60.004 52.381 0.00 0.00 0.00 3.35
353 355 7.159372 GGAGTAATAAGAGAACACAAACCTCA 58.841 38.462 0.00 0.00 0.00 3.86
354 356 6.310711 CGGAGTAATAAGAGAACACAAACCTC 59.689 42.308 0.00 0.00 0.00 3.85
355 357 6.164176 CGGAGTAATAAGAGAACACAAACCT 58.836 40.000 0.00 0.00 0.00 3.50
356 358 5.930569 ACGGAGTAATAAGAGAACACAAACC 59.069 40.000 0.00 0.00 41.94 3.27
357 359 7.288672 CAACGGAGTAATAAGAGAACACAAAC 58.711 38.462 0.00 0.00 45.00 2.93
358 360 6.425721 CCAACGGAGTAATAAGAGAACACAAA 59.574 38.462 0.00 0.00 45.00 2.83
359 361 5.929992 CCAACGGAGTAATAAGAGAACACAA 59.070 40.000 0.00 0.00 45.00 3.33
360 362 5.475719 CCAACGGAGTAATAAGAGAACACA 58.524 41.667 0.00 0.00 45.00 3.72
361 363 4.329256 GCCAACGGAGTAATAAGAGAACAC 59.671 45.833 0.00 0.00 45.00 3.32
362 364 4.501071 GCCAACGGAGTAATAAGAGAACA 58.499 43.478 0.00 0.00 45.00 3.18
363 365 3.869832 GGCCAACGGAGTAATAAGAGAAC 59.130 47.826 0.00 0.00 45.00 3.01
364 366 3.516300 TGGCCAACGGAGTAATAAGAGAA 59.484 43.478 0.61 0.00 45.00 2.87
365 367 3.101437 TGGCCAACGGAGTAATAAGAGA 58.899 45.455 0.61 0.00 45.00 3.10
366 368 3.132289 TCTGGCCAACGGAGTAATAAGAG 59.868 47.826 7.01 0.00 45.00 2.85
368 370 3.536956 TCTGGCCAACGGAGTAATAAG 57.463 47.619 7.01 0.00 45.00 1.73
369 371 3.262405 AGTTCTGGCCAACGGAGTAATAA 59.738 43.478 7.01 0.00 45.00 1.40
370 372 2.835764 AGTTCTGGCCAACGGAGTAATA 59.164 45.455 7.01 0.00 45.00 0.98
371 373 1.628846 AGTTCTGGCCAACGGAGTAAT 59.371 47.619 7.01 0.00 45.00 1.89
372 374 1.053424 AGTTCTGGCCAACGGAGTAA 58.947 50.000 7.01 0.00 45.00 2.24
373 375 1.822990 CTAGTTCTGGCCAACGGAGTA 59.177 52.381 7.01 0.00 45.00 2.59
375 377 0.108138 CCTAGTTCTGGCCAACGGAG 60.108 60.000 7.01 6.24 35.48 4.63
376 378 1.550130 CCCTAGTTCTGGCCAACGGA 61.550 60.000 7.01 0.00 0.00 4.69
377 379 1.078426 CCCTAGTTCTGGCCAACGG 60.078 63.158 7.01 0.40 0.00 4.44
378 380 0.899720 TACCCTAGTTCTGGCCAACG 59.100 55.000 7.01 0.00 0.00 4.10
379 381 3.200165 AGAATACCCTAGTTCTGGCCAAC 59.800 47.826 7.01 2.37 33.64 3.77
386 388 5.530243 AGGCTTGTAGAATACCCTAGTTCT 58.470 41.667 0.00 0.00 42.12 3.01
392 394 7.122948 CGATATAGAAGGCTTGTAGAATACCCT 59.877 40.741 3.46 0.00 42.12 4.34
409 411 7.764443 CACCCTGAAGAAGAAAACGATATAGAA 59.236 37.037 0.00 0.00 0.00 2.10
413 415 5.186198 CCACCCTGAAGAAGAAAACGATAT 58.814 41.667 0.00 0.00 0.00 1.63
416 418 2.846193 CCACCCTGAAGAAGAAAACGA 58.154 47.619 0.00 0.00 0.00 3.85
423 425 1.470098 CAAATCGCCACCCTGAAGAAG 59.530 52.381 0.00 0.00 0.00 2.85
429 431 0.664761 CATAGCAAATCGCCACCCTG 59.335 55.000 0.00 0.00 44.04 4.45
430 432 1.103398 GCATAGCAAATCGCCACCCT 61.103 55.000 0.00 0.00 44.04 4.34
447 449 0.896923 GCCTCCAACCATGAATTGCA 59.103 50.000 0.00 0.00 0.00 4.08
451 453 3.393426 AAGATGCCTCCAACCATGAAT 57.607 42.857 0.00 0.00 0.00 2.57
452 454 2.905415 AAGATGCCTCCAACCATGAA 57.095 45.000 0.00 0.00 0.00 2.57
456 458 2.673775 TCAAAAGATGCCTCCAACCA 57.326 45.000 0.00 0.00 0.00 3.67
462 464 5.292765 TCGATGTAGATCAAAAGATGCCTC 58.707 41.667 0.29 0.00 0.00 4.70
463 465 5.282055 TCGATGTAGATCAAAAGATGCCT 57.718 39.130 0.29 0.00 0.00 4.75
464 466 5.698089 TCATCGATGTAGATCAAAAGATGCC 59.302 40.000 24.09 0.00 36.36 4.40
465 467 6.423302 AGTCATCGATGTAGATCAAAAGATGC 59.577 38.462 24.09 6.35 36.36 3.91
486 488 2.975799 GCAACGGGCGGAAAGTCA 60.976 61.111 0.00 0.00 0.00 3.41
519 522 9.171701 TCTCAACCGAATAAAAATGTTTAAACG 57.828 29.630 13.45 9.26 32.98 3.60
530 533 3.007182 ACCTCCGTCTCAACCGAATAAAA 59.993 43.478 0.00 0.00 0.00 1.52
534 537 0.531200 GACCTCCGTCTCAACCGAAT 59.469 55.000 0.00 0.00 35.99 3.34
557 560 0.537371 AGCAAAACTTGTCCCCTCCG 60.537 55.000 0.00 0.00 0.00 4.63
563 566 1.597937 CGCTGTGAGCAAAACTTGTCC 60.598 52.381 0.00 0.00 42.58 4.02
569 572 3.093449 GCGCGCTGTGAGCAAAAC 61.093 61.111 26.67 0.00 42.58 2.43
581 584 3.418068 GCATCCAGGATAGCGCGC 61.418 66.667 26.66 26.66 0.00 6.86
591 594 1.836166 TCTTCTTCTCCCTGCATCCAG 59.164 52.381 0.00 0.00 38.85 3.86
602 606 2.155279 GGGTGCCAAAGTCTTCTTCTC 58.845 52.381 0.00 0.00 32.90 2.87
638 644 9.768662 CCCAATCCTTATGGAAATTTAGAAATG 57.231 33.333 0.77 0.00 46.80 2.32
643 649 8.482852 ACATCCCAATCCTTATGGAAATTTAG 57.517 34.615 0.77 0.00 46.80 1.85
645 651 7.754091 AACATCCCAATCCTTATGGAAATTT 57.246 32.000 0.77 0.00 46.80 1.82
651 657 6.986231 GCTTAAAAACATCCCAATCCTTATGG 59.014 38.462 0.00 0.00 37.71 2.74
652 658 6.697019 CGCTTAAAAACATCCCAATCCTTATG 59.303 38.462 0.00 0.00 0.00 1.90
676 683 9.567848 AAGGTCATAAATTAATTAGCACAAACG 57.432 29.630 0.01 0.00 0.00 3.60
801 888 3.968649 ACTAGACCGCGCGAAATAATAA 58.031 40.909 34.63 6.92 0.00 1.40
807 894 1.026182 TAGGACTAGACCGCGCGAAA 61.026 55.000 34.63 12.30 34.73 3.46
840 946 3.920553 CGATTTGGGTACGCCGCG 61.921 66.667 12.14 12.14 34.97 6.46
841 947 4.232248 GCGATTTGGGTACGCCGC 62.232 66.667 13.60 13.60 45.35 6.53
918 1036 2.094700 CGATCGAACTTTCTGGGAGACA 60.095 50.000 10.26 0.00 0.00 3.41
968 1092 0.107312 CAGACAGCAGAGGGGGAATG 60.107 60.000 0.00 0.00 0.00 2.67
969 1093 1.919600 GCAGACAGCAGAGGGGGAAT 61.920 60.000 0.00 0.00 44.79 3.01
1180 1305 2.549198 CGCCCATACCTGCATGCAG 61.549 63.158 35.88 35.88 43.26 4.41
1211 1336 7.007725 CACAATCGATTACTGAAATGAGTTTGC 59.992 37.037 10.97 0.00 0.00 3.68
1213 1338 8.099364 ACACAATCGATTACTGAAATGAGTTT 57.901 30.769 10.97 0.00 0.00 2.66
1217 1342 6.313658 CCAGACACAATCGATTACTGAAATGA 59.686 38.462 22.93 0.00 0.00 2.57
1219 1344 6.313905 GTCCAGACACAATCGATTACTGAAAT 59.686 38.462 22.93 6.09 0.00 2.17
1236 1364 0.830444 ACCCAGCGTAAGTCCAGACA 60.830 55.000 0.00 0.00 41.68 3.41
1251 1379 2.139917 CGACTCGAAACAATTCACCCA 58.860 47.619 0.00 0.00 35.15 4.51
1274 1407 2.614057 CAGGGCTACGATCAAATCCAAC 59.386 50.000 0.00 0.00 0.00 3.77
1293 1426 1.396653 GAAATCCATGACCCCTGCAG 58.603 55.000 6.78 6.78 0.00 4.41
1296 1429 1.065491 TCACGAAATCCATGACCCCTG 60.065 52.381 0.00 0.00 0.00 4.45
1309 1442 8.768955 CCCAATAATTGTTCAAATTTCACGAAA 58.231 29.630 0.00 0.00 34.46 3.46
1322 1455 7.807907 CAGTGTCACTAAACCCAATAATTGTTC 59.192 37.037 4.85 0.00 0.00 3.18
1324 1457 7.001674 TCAGTGTCACTAAACCCAATAATTGT 58.998 34.615 4.85 0.00 0.00 2.71
1326 1459 9.396022 CTATCAGTGTCACTAAACCCAATAATT 57.604 33.333 4.85 0.00 0.00 1.40
1327 1460 8.768397 TCTATCAGTGTCACTAAACCCAATAAT 58.232 33.333 4.85 0.00 0.00 1.28
1328 1461 8.038944 GTCTATCAGTGTCACTAAACCCAATAA 58.961 37.037 4.85 0.00 0.00 1.40
1329 1462 7.399191 AGTCTATCAGTGTCACTAAACCCAATA 59.601 37.037 4.85 0.00 0.00 1.90
1340 1473 3.319137 TGCCAAGTCTATCAGTGTCAC 57.681 47.619 0.00 0.00 0.00 3.67
1341 1474 3.306989 CCTTGCCAAGTCTATCAGTGTCA 60.307 47.826 3.37 0.00 0.00 3.58
1344 1477 3.340814 ACCTTGCCAAGTCTATCAGTG 57.659 47.619 3.37 0.00 0.00 3.66
1361 2456 0.769247 ACCGAACAAGGCCTAAACCT 59.231 50.000 5.16 0.00 43.91 3.50
1368 2463 0.392595 CTCCCTAACCGAACAAGGCC 60.393 60.000 0.00 0.00 33.69 5.19
1369 2464 0.392595 CCTCCCTAACCGAACAAGGC 60.393 60.000 0.00 0.00 33.69 4.35
1370 2465 0.252197 CCCTCCCTAACCGAACAAGG 59.748 60.000 0.00 0.00 37.30 3.61
1371 2466 0.981943 ACCCTCCCTAACCGAACAAG 59.018 55.000 0.00 0.00 0.00 3.16
1372 2467 1.437397 AACCCTCCCTAACCGAACAA 58.563 50.000 0.00 0.00 0.00 2.83
1373 2468 1.072648 CAAACCCTCCCTAACCGAACA 59.927 52.381 0.00 0.00 0.00 3.18
1374 2469 1.612462 CCAAACCCTCCCTAACCGAAC 60.612 57.143 0.00 0.00 0.00 3.95
1375 2470 0.694196 CCAAACCCTCCCTAACCGAA 59.306 55.000 0.00 0.00 0.00 4.30
1376 2471 0.178897 TCCAAACCCTCCCTAACCGA 60.179 55.000 0.00 0.00 0.00 4.69
1377 2472 0.252197 CTCCAAACCCTCCCTAACCG 59.748 60.000 0.00 0.00 0.00 4.44
1378 2473 1.560146 CTCTCCAAACCCTCCCTAACC 59.440 57.143 0.00 0.00 0.00 2.85
1379 2474 1.560146 CCTCTCCAAACCCTCCCTAAC 59.440 57.143 0.00 0.00 0.00 2.34
1380 2475 1.153565 ACCTCTCCAAACCCTCCCTAA 59.846 52.381 0.00 0.00 0.00 2.69
1381 2476 0.797579 ACCTCTCCAAACCCTCCCTA 59.202 55.000 0.00 0.00 0.00 3.53
1382 2477 0.103876 AACCTCTCCAAACCCTCCCT 60.104 55.000 0.00 0.00 0.00 4.20
1383 2478 0.778083 AAACCTCTCCAAACCCTCCC 59.222 55.000 0.00 0.00 0.00 4.30
1384 2479 1.423921 TCAAACCTCTCCAAACCCTCC 59.576 52.381 0.00 0.00 0.00 4.30
1385 2480 2.951229 TCAAACCTCTCCAAACCCTC 57.049 50.000 0.00 0.00 0.00 4.30
1386 2481 3.566351 CTTTCAAACCTCTCCAAACCCT 58.434 45.455 0.00 0.00 0.00 4.34
1387 2482 2.628178 CCTTTCAAACCTCTCCAAACCC 59.372 50.000 0.00 0.00 0.00 4.11
1388 2483 2.628178 CCCTTTCAAACCTCTCCAAACC 59.372 50.000 0.00 0.00 0.00 3.27
1389 2484 3.562182 TCCCTTTCAAACCTCTCCAAAC 58.438 45.455 0.00 0.00 0.00 2.93
1390 2485 3.963476 TCCCTTTCAAACCTCTCCAAA 57.037 42.857 0.00 0.00 0.00 3.28
1391 2486 4.469469 AATCCCTTTCAAACCTCTCCAA 57.531 40.909 0.00 0.00 0.00 3.53
1392 2487 5.592587 TTAATCCCTTTCAAACCTCTCCA 57.407 39.130 0.00 0.00 0.00 3.86
1393 2488 6.096987 GGATTTAATCCCTTTCAAACCTCTCC 59.903 42.308 12.74 0.00 43.88 3.71
1394 2489 7.101652 GGATTTAATCCCTTTCAAACCTCTC 57.898 40.000 12.74 0.00 43.88 3.20
1408 2503 6.036577 TTTGACTTGCAAGGGATTTAATCC 57.963 37.500 29.18 15.22 39.39 3.01
1409 2504 8.037166 AGATTTTGACTTGCAAGGGATTTAATC 58.963 33.333 29.18 24.10 37.87 1.75
1410 2505 7.910584 AGATTTTGACTTGCAAGGGATTTAAT 58.089 30.769 29.18 18.73 37.87 1.40
1411 2506 7.301868 AGATTTTGACTTGCAAGGGATTTAA 57.698 32.000 29.18 15.31 37.87 1.52
1412 2507 6.071391 GGAGATTTTGACTTGCAAGGGATTTA 60.071 38.462 29.18 11.01 37.87 1.40
1413 2508 5.279657 GGAGATTTTGACTTGCAAGGGATTT 60.280 40.000 29.18 8.87 37.87 2.17
1414 2509 4.221482 GGAGATTTTGACTTGCAAGGGATT 59.779 41.667 29.18 9.27 37.87 3.01
1415 2510 3.766051 GGAGATTTTGACTTGCAAGGGAT 59.234 43.478 29.18 14.92 37.87 3.85
1416 2511 3.157087 GGAGATTTTGACTTGCAAGGGA 58.843 45.455 29.18 13.09 37.87 4.20
1417 2512 3.160269 AGGAGATTTTGACTTGCAAGGG 58.840 45.455 29.18 7.81 37.87 3.95
1418 2513 4.279169 TGAAGGAGATTTTGACTTGCAAGG 59.721 41.667 29.18 12.28 37.87 3.61
1419 2514 5.443185 TGAAGGAGATTTTGACTTGCAAG 57.557 39.130 24.84 24.84 37.87 4.01
1420 2515 5.850557 TTGAAGGAGATTTTGACTTGCAA 57.149 34.783 0.00 0.00 33.88 4.08
1421 2516 5.047802 GGATTGAAGGAGATTTTGACTTGCA 60.048 40.000 0.00 0.00 0.00 4.08
1422 2517 5.405797 GGATTGAAGGAGATTTTGACTTGC 58.594 41.667 0.00 0.00 0.00 4.01
1423 2518 5.713861 AGGGATTGAAGGAGATTTTGACTTG 59.286 40.000 0.00 0.00 0.00 3.16
1424 2519 5.896963 AGGGATTGAAGGAGATTTTGACTT 58.103 37.500 0.00 0.00 0.00 3.01
1425 2520 5.527026 AGGGATTGAAGGAGATTTTGACT 57.473 39.130 0.00 0.00 0.00 3.41
1426 2521 6.393171 CAAAGGGATTGAAGGAGATTTTGAC 58.607 40.000 0.00 0.00 41.85 3.18
1427 2522 5.481473 CCAAAGGGATTGAAGGAGATTTTGA 59.519 40.000 0.00 0.00 41.85 2.69
1428 2523 5.246883 ACCAAAGGGATTGAAGGAGATTTTG 59.753 40.000 0.00 0.00 41.85 2.44
1429 2524 5.246883 CACCAAAGGGATTGAAGGAGATTTT 59.753 40.000 0.00 0.00 41.85 1.82
1430 2525 4.774200 CACCAAAGGGATTGAAGGAGATTT 59.226 41.667 0.00 0.00 41.85 2.17
1431 2526 4.044571 TCACCAAAGGGATTGAAGGAGATT 59.955 41.667 0.00 0.00 41.85 2.40
1432 2527 3.593328 TCACCAAAGGGATTGAAGGAGAT 59.407 43.478 0.00 0.00 41.85 2.75
1433 2528 2.986019 TCACCAAAGGGATTGAAGGAGA 59.014 45.455 0.00 0.00 41.85 3.71
1434 2529 3.350833 CTCACCAAAGGGATTGAAGGAG 58.649 50.000 0.00 0.00 41.85 3.69
1435 2530 2.041620 CCTCACCAAAGGGATTGAAGGA 59.958 50.000 0.00 0.00 41.85 3.36
1436 2531 2.450476 CCTCACCAAAGGGATTGAAGG 58.550 52.381 0.00 0.00 41.85 3.46
1445 2540 1.289160 TCTGATCCCCTCACCAAAGG 58.711 55.000 0.00 0.00 36.08 3.11
1446 2541 3.054139 TGATTCTGATCCCCTCACCAAAG 60.054 47.826 0.00 0.00 0.00 2.77
1447 2542 2.918934 TGATTCTGATCCCCTCACCAAA 59.081 45.455 0.00 0.00 0.00 3.28
1448 2543 2.239654 GTGATTCTGATCCCCTCACCAA 59.760 50.000 0.00 0.00 32.08 3.67
1449 2544 1.839994 GTGATTCTGATCCCCTCACCA 59.160 52.381 0.00 0.00 32.08 4.17
1450 2545 1.141858 GGTGATTCTGATCCCCTCACC 59.858 57.143 14.35 14.35 46.38 4.02
1451 2546 1.202580 CGGTGATTCTGATCCCCTCAC 60.203 57.143 0.00 0.00 36.38 3.51
1452 2547 1.123077 CGGTGATTCTGATCCCCTCA 58.877 55.000 0.00 0.00 28.53 3.86
1453 2548 1.414158 TCGGTGATTCTGATCCCCTC 58.586 55.000 0.00 0.00 28.53 4.30
1454 2549 1.765314 CTTCGGTGATTCTGATCCCCT 59.235 52.381 0.00 0.00 28.53 4.79
1455 2550 1.762957 TCTTCGGTGATTCTGATCCCC 59.237 52.381 0.00 0.00 0.00 4.81
1471 2566 1.838913 GCATCAGCGAGAGACTCTTC 58.161 55.000 6.40 2.13 0.00 2.87
1489 2589 3.628032 GGGAGCCACAGTTCTTAATAAGC 59.372 47.826 0.00 0.00 0.00 3.09
1494 2594 2.838202 CCTAGGGAGCCACAGTTCTTAA 59.162 50.000 0.00 0.00 0.00 1.85
1495 2595 2.467880 CCTAGGGAGCCACAGTTCTTA 58.532 52.381 0.00 0.00 0.00 2.10
1509 2609 0.392193 CAGTTGCAGAGTGCCTAGGG 60.392 60.000 11.72 0.00 44.23 3.53
1522 2622 3.334583 TTCACTAGGATGGACAGTTGC 57.665 47.619 0.00 0.00 0.00 4.17
1549 2649 3.605486 GCTTTGACGATGAAAATGCTGAC 59.395 43.478 0.00 0.00 0.00 3.51
1561 2661 0.457851 CCTCTCGAGGCTTTGACGAT 59.542 55.000 13.56 0.00 42.44 3.73
1575 2675 6.127675 ACTCGAAACTAACCAACTATCCTCTC 60.128 42.308 0.00 0.00 0.00 3.20
1577 2677 5.963594 ACTCGAAACTAACCAACTATCCTC 58.036 41.667 0.00 0.00 0.00 3.71
1579 2679 7.542025 TCTTACTCGAAACTAACCAACTATCC 58.458 38.462 0.00 0.00 0.00 2.59
1580 2680 7.220491 GCTCTTACTCGAAACTAACCAACTATC 59.780 40.741 0.00 0.00 0.00 2.08
1581 2681 7.034397 GCTCTTACTCGAAACTAACCAACTAT 58.966 38.462 0.00 0.00 0.00 2.12
1582 2682 6.016024 TGCTCTTACTCGAAACTAACCAACTA 60.016 38.462 0.00 0.00 0.00 2.24
1583 2683 5.221382 TGCTCTTACTCGAAACTAACCAACT 60.221 40.000 0.00 0.00 0.00 3.16
1584 2684 4.986659 TGCTCTTACTCGAAACTAACCAAC 59.013 41.667 0.00 0.00 0.00 3.77
1586 2686 4.521639 TCTGCTCTTACTCGAAACTAACCA 59.478 41.667 0.00 0.00 0.00 3.67
1588 2688 7.412020 CCATTTCTGCTCTTACTCGAAACTAAC 60.412 40.741 0.00 0.00 0.00 2.34
1589 2689 6.590292 CCATTTCTGCTCTTACTCGAAACTAA 59.410 38.462 0.00 0.00 0.00 2.24
1590 2690 6.100004 CCATTTCTGCTCTTACTCGAAACTA 58.900 40.000 0.00 0.00 0.00 2.24
1591 2691 4.932200 CCATTTCTGCTCTTACTCGAAACT 59.068 41.667 0.00 0.00 0.00 2.66
1592 2692 4.093556 CCCATTTCTGCTCTTACTCGAAAC 59.906 45.833 0.00 0.00 0.00 2.78
1593 2693 4.253685 CCCATTTCTGCTCTTACTCGAAA 58.746 43.478 0.00 0.00 0.00 3.46
1595 2695 2.832129 ACCCATTTCTGCTCTTACTCGA 59.168 45.455 0.00 0.00 0.00 4.04
1596 2696 2.932614 CACCCATTTCTGCTCTTACTCG 59.067 50.000 0.00 0.00 0.00 4.18
1597 2697 3.055094 TCCACCCATTTCTGCTCTTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1600 2910 4.228210 AGATTCCACCCATTTCTGCTCTTA 59.772 41.667 0.00 0.00 0.00 2.10
1611 2921 0.759346 GCGTCCTAGATTCCACCCAT 59.241 55.000 0.00 0.00 0.00 4.00
1614 2924 1.757699 AGAAGCGTCCTAGATTCCACC 59.242 52.381 0.00 0.00 37.24 4.61
1615 2925 2.166664 ACAGAAGCGTCCTAGATTCCAC 59.833 50.000 0.00 0.00 37.24 4.02
1619 2929 5.153950 AGAAAACAGAAGCGTCCTAGATT 57.846 39.130 0.00 0.00 0.00 2.40
1628 2938 6.869421 TTCAAGAAAAAGAAAACAGAAGCG 57.131 33.333 0.00 0.00 0.00 4.68
1631 2941 8.859156 CGTGAATTCAAGAAAAAGAAAACAGAA 58.141 29.630 15.34 0.00 0.00 3.02
1634 2944 6.035542 GGCGTGAATTCAAGAAAAAGAAAACA 59.964 34.615 23.23 0.00 0.00 2.83
1635 2945 6.255670 AGGCGTGAATTCAAGAAAAAGAAAAC 59.744 34.615 23.23 3.24 0.00 2.43
1636 2946 6.337356 AGGCGTGAATTCAAGAAAAAGAAAA 58.663 32.000 23.23 0.00 0.00 2.29
1638 2948 5.507315 GGAGGCGTGAATTCAAGAAAAAGAA 60.507 40.000 23.23 0.00 0.00 2.52
1639 2949 4.023193 GGAGGCGTGAATTCAAGAAAAAGA 60.023 41.667 23.23 0.00 0.00 2.52
1640 2950 4.229876 GGAGGCGTGAATTCAAGAAAAAG 58.770 43.478 23.23 5.17 0.00 2.27
1649 2959 1.808411 TCAACTGGAGGCGTGAATTC 58.192 50.000 0.00 0.00 0.00 2.17
1651 2961 1.742761 CATCAACTGGAGGCGTGAAT 58.257 50.000 0.00 0.00 0.00 2.57
1659 2969 1.207570 AGCTCTCTGCATCAACTGGAG 59.792 52.381 0.00 0.00 45.94 3.86
1661 2971 2.093816 TGTAGCTCTCTGCATCAACTGG 60.094 50.000 0.00 0.00 45.94 4.00
1664 2974 3.740321 GCTATGTAGCTCTCTGCATCAAC 59.260 47.826 4.81 0.00 43.21 3.18
1680 2990 2.979814 TAGAATGCACGGTGCTATGT 57.020 45.000 30.81 20.33 45.31 2.29
1704 3014 4.499019 GCTTCAAATCTGTGACGGGAAAAA 60.499 41.667 0.00 0.00 0.00 1.94
1708 3018 1.071542 TGCTTCAAATCTGTGACGGGA 59.928 47.619 0.00 0.00 0.00 5.14
1709 3019 1.466167 CTGCTTCAAATCTGTGACGGG 59.534 52.381 0.00 0.00 0.00 5.28
1710 3020 2.096069 CACTGCTTCAAATCTGTGACGG 60.096 50.000 0.00 0.00 35.15 4.79
1711 3021 2.663879 GCACTGCTTCAAATCTGTGACG 60.664 50.000 7.51 0.00 35.15 4.35
1712 3022 2.291465 TGCACTGCTTCAAATCTGTGAC 59.709 45.455 1.98 1.69 35.15 3.67
1714 3024 2.033675 TGTGCACTGCTTCAAATCTGTG 59.966 45.455 19.41 0.00 35.92 3.66
1715 3025 2.300433 TGTGCACTGCTTCAAATCTGT 58.700 42.857 19.41 0.00 0.00 3.41
1716 3026 3.243301 ACTTGTGCACTGCTTCAAATCTG 60.243 43.478 19.41 0.00 0.00 2.90
1717 3027 2.954318 ACTTGTGCACTGCTTCAAATCT 59.046 40.909 19.41 0.00 0.00 2.40
1719 3029 3.806625 AACTTGTGCACTGCTTCAAAT 57.193 38.095 19.41 0.00 0.00 2.32
1720 3030 3.591196 AAACTTGTGCACTGCTTCAAA 57.409 38.095 19.41 0.54 0.00 2.69
1721 3031 3.193267 AGAAAACTTGTGCACTGCTTCAA 59.807 39.130 19.41 1.41 0.00 2.69
1722 3032 2.754552 AGAAAACTTGTGCACTGCTTCA 59.245 40.909 19.41 0.00 0.00 3.02
1723 3033 3.427161 AGAAAACTTGTGCACTGCTTC 57.573 42.857 19.41 15.25 0.00 3.86
1724 3034 3.193267 TCAAGAAAACTTGTGCACTGCTT 59.807 39.130 19.41 4.32 35.91 3.91
1725 3035 2.754552 TCAAGAAAACTTGTGCACTGCT 59.245 40.909 19.41 0.00 35.91 4.24
1726 3036 3.149436 TCAAGAAAACTTGTGCACTGC 57.851 42.857 19.41 0.00 35.91 4.40
1727 3037 7.612266 GTTTTATCAAGAAAACTTGTGCACTG 58.388 34.615 19.41 13.21 43.14 3.66
1728 3038 7.755582 GTTTTATCAAGAAAACTTGTGCACT 57.244 32.000 19.41 0.00 43.14 4.40
1778 3088 0.036765 GTTGTGCGGTCAGGTATGGA 60.037 55.000 0.00 0.00 0.00 3.41
1780 3090 1.024579 GGGTTGTGCGGTCAGGTATG 61.025 60.000 0.00 0.00 0.00 2.39
1790 3109 1.002468 CAACTTTCTCAGGGTTGTGCG 60.002 52.381 0.00 0.00 36.55 5.34
1803 3122 3.006247 GGATCTCCACAGCTCAACTTTC 58.994 50.000 0.00 0.00 35.64 2.62
1821 3140 5.011329 ACATCAAAACAAGTTGCTCATGGAT 59.989 36.000 1.81 0.00 0.00 3.41
1860 3179 9.061610 CAATCAATACAGACAACGGTTATTTTC 57.938 33.333 0.00 0.00 0.00 2.29
1913 3233 4.327680 ACAAGCAGGGAGTCAGAATAAAC 58.672 43.478 0.00 0.00 0.00 2.01
1916 3236 3.582647 TGAACAAGCAGGGAGTCAGAATA 59.417 43.478 0.00 0.00 0.00 1.75
2059 3379 3.512680 GAAGAAGAACATCACCGTCGAT 58.487 45.455 0.00 0.00 0.00 3.59
2267 3587 1.676746 AATAGCACATGAGCAGCCAG 58.323 50.000 17.61 0.00 36.85 4.85
2303 3623 5.221925 ACCAGTGATCACAGACATTTTACCT 60.222 40.000 27.02 0.00 0.00 3.08
2315 3635 1.000843 CCTCGTTGACCAGTGATCACA 59.999 52.381 27.02 3.61 0.00 3.58
2316 3636 1.000955 ACCTCGTTGACCAGTGATCAC 59.999 52.381 18.47 18.47 0.00 3.06
2360 3680 3.118112 ACAAGACTGGATAAGCTGGGATG 60.118 47.826 0.00 0.00 0.00 3.51
2363 3683 4.346418 AGATACAAGACTGGATAAGCTGGG 59.654 45.833 0.00 0.00 0.00 4.45
2416 3736 3.063861 TGGAGCATTTCGAACAATCATCG 59.936 43.478 0.00 0.00 41.53 3.84
2437 3757 6.395426 ACCAATGCCAACATATTCTGTATG 57.605 37.500 0.00 0.00 36.98 2.39
2439 3759 7.228507 GTCATACCAATGCCAACATATTCTGTA 59.771 37.037 0.00 0.00 34.62 2.74
2484 3813 6.479884 AGAGACAAAATAGGATTCAGCAACT 58.520 36.000 0.00 0.00 0.00 3.16
2528 3857 7.254252 GGAATCAATCTACAAGACGTTCATCAG 60.254 40.741 0.00 0.00 0.00 2.90
2529 3858 6.535150 GGAATCAATCTACAAGACGTTCATCA 59.465 38.462 0.00 0.00 0.00 3.07
2531 3860 6.313905 GTGGAATCAATCTACAAGACGTTCAT 59.686 38.462 0.00 0.00 39.22 2.57
2533 3862 5.220228 CGTGGAATCAATCTACAAGACGTTC 60.220 44.000 0.00 0.00 39.36 3.95
2534 3863 4.625742 CGTGGAATCAATCTACAAGACGTT 59.374 41.667 0.00 0.00 39.36 3.99
2535 3864 4.174009 CGTGGAATCAATCTACAAGACGT 58.826 43.478 0.00 0.00 39.36 4.34
2536 3865 4.174009 ACGTGGAATCAATCTACAAGACG 58.826 43.478 0.00 0.00 39.36 4.18
2537 3866 6.253727 CAGTACGTGGAATCAATCTACAAGAC 59.746 42.308 0.00 0.00 39.36 3.01
2654 4447 4.337555 CGGAAGATCAATGCTTCAGGAATT 59.662 41.667 0.00 0.00 42.68 2.17
2674 4467 7.985184 AGAACAGTCAATAATTATTAGCACGGA 59.015 33.333 10.34 0.59 0.00 4.69
2701 4494 3.443681 CGTGTAGGAATCTTGGGCAAAAT 59.556 43.478 0.00 0.00 0.00 1.82
2744 4539 3.188460 TCGACAACAAAGCAAGCCTAATC 59.812 43.478 0.00 0.00 0.00 1.75
2771 4567 6.528072 CCTTTCTCGGTTAAATTGCAGATTTC 59.472 38.462 9.24 0.00 0.00 2.17
2775 4571 4.215399 CACCTTTCTCGGTTAAATTGCAGA 59.785 41.667 0.00 0.00 34.29 4.26
2778 4574 4.759516 TCACCTTTCTCGGTTAAATTGC 57.240 40.909 0.00 0.00 34.29 3.56
2788 4584 4.861210 AGCTACGATATTCACCTTTCTCG 58.139 43.478 0.00 0.00 0.00 4.04
2816 4612 6.963083 ATTACTAGGTCCTGATCAGTACAC 57.037 41.667 21.11 13.69 0.00 2.90
2841 4637 6.648192 ACTCTCCTATTTGGTTCAAGAGATG 58.352 40.000 7.33 0.00 36.86 2.90
2855 4651 9.233649 CTATCTAACGGATACAACTCTCCTATT 57.766 37.037 0.00 0.00 35.98 1.73
2857 4653 7.971201 TCTATCTAACGGATACAACTCTCCTA 58.029 38.462 0.00 0.00 35.98 2.94
2877 4673 9.274206 GGGTGGTGTTATCTATTTCTTTCTATC 57.726 37.037 0.00 0.00 0.00 2.08
2878 4674 8.778059 TGGGTGGTGTTATCTATTTCTTTCTAT 58.222 33.333 0.00 0.00 0.00 1.98
2879 4675 8.153221 TGGGTGGTGTTATCTATTTCTTTCTA 57.847 34.615 0.00 0.00 0.00 2.10
2880 4676 7.027874 TGGGTGGTGTTATCTATTTCTTTCT 57.972 36.000 0.00 0.00 0.00 2.52
2881 4677 7.175990 TGTTGGGTGGTGTTATCTATTTCTTTC 59.824 37.037 0.00 0.00 0.00 2.62
2882 4678 7.007723 TGTTGGGTGGTGTTATCTATTTCTTT 58.992 34.615 0.00 0.00 0.00 2.52
2883 4679 6.433093 GTGTTGGGTGGTGTTATCTATTTCTT 59.567 38.462 0.00 0.00 0.00 2.52
2884 4680 5.944007 GTGTTGGGTGGTGTTATCTATTTCT 59.056 40.000 0.00 0.00 0.00 2.52
2885 4681 5.124936 GGTGTTGGGTGGTGTTATCTATTTC 59.875 44.000 0.00 0.00 0.00 2.17
2886 4682 5.014202 GGTGTTGGGTGGTGTTATCTATTT 58.986 41.667 0.00 0.00 0.00 1.40
2887 4683 4.043561 TGGTGTTGGGTGGTGTTATCTATT 59.956 41.667 0.00 0.00 0.00 1.73
2888 4684 3.589735 TGGTGTTGGGTGGTGTTATCTAT 59.410 43.478 0.00 0.00 0.00 1.98
2889 4685 2.980379 TGGTGTTGGGTGGTGTTATCTA 59.020 45.455 0.00 0.00 0.00 1.98
2940 4881 0.671781 CCGAACAAGGCCTCAGTCTG 60.672 60.000 5.23 1.84 0.00 3.51
2941 4882 1.122019 ACCGAACAAGGCCTCAGTCT 61.122 55.000 5.23 0.00 33.69 3.24
2942 4883 0.250338 AACCGAACAAGGCCTCAGTC 60.250 55.000 5.23 2.14 33.69 3.51
2944 4885 1.270625 TGTAACCGAACAAGGCCTCAG 60.271 52.381 5.23 4.30 33.69 3.35
2945 4886 0.759959 TGTAACCGAACAAGGCCTCA 59.240 50.000 5.23 0.00 33.69 3.86
2946 4887 1.154197 GTGTAACCGAACAAGGCCTC 58.846 55.000 5.23 0.00 33.69 4.70
2947 4888 3.317449 GTGTAACCGAACAAGGCCT 57.683 52.632 0.00 0.00 33.69 5.19
2967 4908 2.573462 CCCTCCAATCCTCTTCACAAGA 59.427 50.000 0.00 0.00 35.87 3.02
2968 4909 2.356535 CCCCTCCAATCCTCTTCACAAG 60.357 54.545 0.00 0.00 0.00 3.16
2969 4910 1.635487 CCCCTCCAATCCTCTTCACAA 59.365 52.381 0.00 0.00 0.00 3.33
2970 4911 1.203428 TCCCCTCCAATCCTCTTCACA 60.203 52.381 0.00 0.00 0.00 3.58
2971 4912 1.584724 TCCCCTCCAATCCTCTTCAC 58.415 55.000 0.00 0.00 0.00 3.18
2972 4913 2.594536 ATCCCCTCCAATCCTCTTCA 57.405 50.000 0.00 0.00 0.00 3.02
2973 4914 3.560105 CAAATCCCCTCCAATCCTCTTC 58.440 50.000 0.00 0.00 0.00 2.87
2974 4915 2.245806 CCAAATCCCCTCCAATCCTCTT 59.754 50.000 0.00 0.00 0.00 2.85
2975 4916 1.855599 CCAAATCCCCTCCAATCCTCT 59.144 52.381 0.00 0.00 0.00 3.69
2976 4917 1.133356 CCCAAATCCCCTCCAATCCTC 60.133 57.143 0.00 0.00 0.00 3.71
2977 4918 0.936691 CCCAAATCCCCTCCAATCCT 59.063 55.000 0.00 0.00 0.00 3.24
2978 4919 0.636647 ACCCAAATCCCCTCCAATCC 59.363 55.000 0.00 0.00 0.00 3.01
2979 4920 1.689258 CCACCCAAATCCCCTCCAATC 60.689 57.143 0.00 0.00 0.00 2.67
2980 4921 0.339510 CCACCCAAATCCCCTCCAAT 59.660 55.000 0.00 0.00 0.00 3.16
2981 4922 0.778078 TCCACCCAAATCCCCTCCAA 60.778 55.000 0.00 0.00 0.00 3.53
2982 4923 0.554865 ATCCACCCAAATCCCCTCCA 60.555 55.000 0.00 0.00 0.00 3.86
2983 4924 0.636647 AATCCACCCAAATCCCCTCC 59.363 55.000 0.00 0.00 0.00 4.30
2984 4925 2.501316 CAAAATCCACCCAAATCCCCTC 59.499 50.000 0.00 0.00 0.00 4.30
2985 4926 2.113414 TCAAAATCCACCCAAATCCCCT 59.887 45.455 0.00 0.00 0.00 4.79
2986 4927 2.236146 GTCAAAATCCACCCAAATCCCC 59.764 50.000 0.00 0.00 0.00 4.81
2987 4928 3.173151 AGTCAAAATCCACCCAAATCCC 58.827 45.455 0.00 0.00 0.00 3.85
2988 4929 4.040339 ACAAGTCAAAATCCACCCAAATCC 59.960 41.667 0.00 0.00 0.00 3.01
2989 4930 5.213891 ACAAGTCAAAATCCACCCAAATC 57.786 39.130 0.00 0.00 0.00 2.17
2990 4931 6.553100 TCTTACAAGTCAAAATCCACCCAAAT 59.447 34.615 0.00 0.00 0.00 2.32
2991 4932 5.894393 TCTTACAAGTCAAAATCCACCCAAA 59.106 36.000 0.00 0.00 0.00 3.28
2992 4933 5.450453 TCTTACAAGTCAAAATCCACCCAA 58.550 37.500 0.00 0.00 0.00 4.12
2993 4934 5.055265 TCTTACAAGTCAAAATCCACCCA 57.945 39.130 0.00 0.00 0.00 4.51
2994 4935 5.313712 TCTCTTACAAGTCAAAATCCACCC 58.686 41.667 0.00 0.00 0.00 4.61
2995 4936 7.454260 AATCTCTTACAAGTCAAAATCCACC 57.546 36.000 0.00 0.00 0.00 4.61
3002 4943 9.832445 GGTGGATATAATCTCTTACAAGTCAAA 57.168 33.333 0.00 0.00 0.00 2.69
3003 4944 9.213777 AGGTGGATATAATCTCTTACAAGTCAA 57.786 33.333 0.00 0.00 0.00 3.18
3004 4945 8.783660 AGGTGGATATAATCTCTTACAAGTCA 57.216 34.615 0.00 0.00 0.00 3.41
3005 4946 8.861086 TGAGGTGGATATAATCTCTTACAAGTC 58.139 37.037 1.08 0.00 0.00 3.01
3006 4947 8.783660 TGAGGTGGATATAATCTCTTACAAGT 57.216 34.615 1.08 0.00 0.00 3.16
3008 4949 9.832445 GTTTGAGGTGGATATAATCTCTTACAA 57.168 33.333 1.08 0.00 0.00 2.41
3009 4950 9.213777 AGTTTGAGGTGGATATAATCTCTTACA 57.786 33.333 1.08 0.00 0.00 2.41
3010 4951 9.699703 GAGTTTGAGGTGGATATAATCTCTTAC 57.300 37.037 1.08 0.17 0.00 2.34
3011 4952 9.661954 AGAGTTTGAGGTGGATATAATCTCTTA 57.338 33.333 0.00 0.00 28.34 2.10
3012 4953 8.428063 CAGAGTTTGAGGTGGATATAATCTCTT 58.572 37.037 0.00 0.00 29.62 2.85
3013 4954 7.472663 GCAGAGTTTGAGGTGGATATAATCTCT 60.473 40.741 0.00 0.00 31.24 3.10
3014 4955 6.648725 GCAGAGTTTGAGGTGGATATAATCTC 59.351 42.308 0.00 0.00 0.00 2.75
3015 4956 6.465035 GGCAGAGTTTGAGGTGGATATAATCT 60.465 42.308 0.00 0.00 0.00 2.40
3016 4957 5.703130 GGCAGAGTTTGAGGTGGATATAATC 59.297 44.000 0.00 0.00 0.00 1.75
3017 4958 5.132648 TGGCAGAGTTTGAGGTGGATATAAT 59.867 40.000 0.00 0.00 0.00 1.28
3018 4959 4.473196 TGGCAGAGTTTGAGGTGGATATAA 59.527 41.667 0.00 0.00 0.00 0.98
3019 4960 4.037222 TGGCAGAGTTTGAGGTGGATATA 58.963 43.478 0.00 0.00 0.00 0.86
3020 4961 2.846206 TGGCAGAGTTTGAGGTGGATAT 59.154 45.455 0.00 0.00 0.00 1.63
3021 4962 2.265367 TGGCAGAGTTTGAGGTGGATA 58.735 47.619 0.00 0.00 0.00 2.59
3022 4963 1.067295 TGGCAGAGTTTGAGGTGGAT 58.933 50.000 0.00 0.00 0.00 3.41
3023 4964 0.843309 TTGGCAGAGTTTGAGGTGGA 59.157 50.000 0.00 0.00 0.00 4.02
3024 4965 1.338020 GTTTGGCAGAGTTTGAGGTGG 59.662 52.381 0.00 0.00 0.00 4.61
3025 4966 1.338020 GGTTTGGCAGAGTTTGAGGTG 59.662 52.381 0.00 0.00 0.00 4.00
3026 4967 1.692411 GGTTTGGCAGAGTTTGAGGT 58.308 50.000 0.00 0.00 0.00 3.85
3027 4968 0.961753 GGGTTTGGCAGAGTTTGAGG 59.038 55.000 0.00 0.00 0.00 3.86
3028 4969 0.961753 GGGGTTTGGCAGAGTTTGAG 59.038 55.000 0.00 0.00 0.00 3.02
3029 4970 0.555769 AGGGGTTTGGCAGAGTTTGA 59.444 50.000 0.00 0.00 0.00 2.69
3030 4971 0.961753 GAGGGGTTTGGCAGAGTTTG 59.038 55.000 0.00 0.00 0.00 2.93
3031 4972 0.178961 GGAGGGGTTTGGCAGAGTTT 60.179 55.000 0.00 0.00 0.00 2.66
3032 4973 1.068352 AGGAGGGGTTTGGCAGAGTT 61.068 55.000 0.00 0.00 0.00 3.01
3033 4974 0.178873 TAGGAGGGGTTTGGCAGAGT 60.179 55.000 0.00 0.00 0.00 3.24
3034 4975 0.991920 TTAGGAGGGGTTTGGCAGAG 59.008 55.000 0.00 0.00 0.00 3.35
3035 4976 1.451449 TTTAGGAGGGGTTTGGCAGA 58.549 50.000 0.00 0.00 0.00 4.26
3036 4977 2.379005 GATTTAGGAGGGGTTTGGCAG 58.621 52.381 0.00 0.00 0.00 4.85
3037 4978 1.006639 GGATTTAGGAGGGGTTTGGCA 59.993 52.381 0.00 0.00 0.00 4.92
3038 4979 1.688311 GGGATTTAGGAGGGGTTTGGC 60.688 57.143 0.00 0.00 0.00 4.52
3039 4980 1.930204 AGGGATTTAGGAGGGGTTTGG 59.070 52.381 0.00 0.00 0.00 3.28
3040 4981 2.311841 ACAGGGATTTAGGAGGGGTTTG 59.688 50.000 0.00 0.00 0.00 2.93
3041 4982 2.581246 GACAGGGATTTAGGAGGGGTTT 59.419 50.000 0.00 0.00 0.00 3.27
3042 4983 2.206223 GACAGGGATTTAGGAGGGGTT 58.794 52.381 0.00 0.00 0.00 4.11
3043 4984 1.082194 TGACAGGGATTTAGGAGGGGT 59.918 52.381 0.00 0.00 0.00 4.95
3044 4985 1.893315 TGACAGGGATTTAGGAGGGG 58.107 55.000 0.00 0.00 0.00 4.79
3045 4986 2.092375 GGTTGACAGGGATTTAGGAGGG 60.092 54.545 0.00 0.00 0.00 4.30
3046 4987 2.420129 CGGTTGACAGGGATTTAGGAGG 60.420 54.545 0.00 0.00 0.00 4.30
3047 4988 2.500098 TCGGTTGACAGGGATTTAGGAG 59.500 50.000 0.00 0.00 0.00 3.69
3048 4989 2.542550 TCGGTTGACAGGGATTTAGGA 58.457 47.619 0.00 0.00 0.00 2.94
3049 4990 3.007635 GTTCGGTTGACAGGGATTTAGG 58.992 50.000 0.00 0.00 0.00 2.69
3050 4991 3.670625 TGTTCGGTTGACAGGGATTTAG 58.329 45.455 0.00 0.00 0.00 1.85
3051 4992 3.773418 TGTTCGGTTGACAGGGATTTA 57.227 42.857 0.00 0.00 0.00 1.40
3052 4993 2.649531 TGTTCGGTTGACAGGGATTT 57.350 45.000 0.00 0.00 0.00 2.17
3053 4994 2.504367 CTTGTTCGGTTGACAGGGATT 58.496 47.619 0.00 0.00 0.00 3.01
3054 4995 1.271379 CCTTGTTCGGTTGACAGGGAT 60.271 52.381 0.00 0.00 44.49 3.85
3055 4996 0.107831 CCTTGTTCGGTTGACAGGGA 59.892 55.000 0.00 0.00 44.49 4.20
3056 4997 1.515521 GCCTTGTTCGGTTGACAGGG 61.516 60.000 1.49 1.49 44.52 4.45
3057 4998 1.515521 GGCCTTGTTCGGTTGACAGG 61.516 60.000 0.00 0.00 0.00 4.00
3058 4999 0.535102 AGGCCTTGTTCGGTTGACAG 60.535 55.000 0.00 0.00 0.00 3.51
3059 5000 0.759959 TAGGCCTTGTTCGGTTGACA 59.240 50.000 12.58 0.00 0.00 3.58
3060 5001 1.886886 TTAGGCCTTGTTCGGTTGAC 58.113 50.000 12.58 0.00 0.00 3.18
3061 5002 2.500229 CTTTAGGCCTTGTTCGGTTGA 58.500 47.619 12.58 0.00 0.00 3.18
3062 5003 1.539827 CCTTTAGGCCTTGTTCGGTTG 59.460 52.381 12.58 0.00 0.00 3.77
3063 5004 1.422402 TCCTTTAGGCCTTGTTCGGTT 59.578 47.619 12.58 0.00 34.44 4.44
3064 5005 1.061546 TCCTTTAGGCCTTGTTCGGT 58.938 50.000 12.58 0.00 34.44 4.69
3065 5006 2.420058 ATCCTTTAGGCCTTGTTCGG 57.580 50.000 12.58 5.17 34.44 4.30
3066 5007 5.465724 GTGTATATCCTTTAGGCCTTGTTCG 59.534 44.000 12.58 0.00 34.44 3.95
3067 5008 6.354130 TGTGTATATCCTTTAGGCCTTGTTC 58.646 40.000 12.58 0.00 34.44 3.18
3068 5009 6.157994 TCTGTGTATATCCTTTAGGCCTTGTT 59.842 38.462 12.58 0.00 34.44 2.83
3069 5010 5.665812 TCTGTGTATATCCTTTAGGCCTTGT 59.334 40.000 12.58 0.00 34.44 3.16
3070 5011 6.174720 TCTGTGTATATCCTTTAGGCCTTG 57.825 41.667 12.58 1.17 34.44 3.61
3071 5012 7.394144 AATCTGTGTATATCCTTTAGGCCTT 57.606 36.000 12.58 0.00 34.44 4.35
3072 5013 7.394144 AAATCTGTGTATATCCTTTAGGCCT 57.606 36.000 11.78 11.78 34.44 5.19
3073 5014 7.502561 ACAAAATCTGTGTATATCCTTTAGGCC 59.497 37.037 0.00 0.00 36.69 5.19
3074 5015 8.451908 ACAAAATCTGTGTATATCCTTTAGGC 57.548 34.615 0.00 0.00 36.69 3.93
3075 5016 9.613428 TGACAAAATCTGTGTATATCCTTTAGG 57.387 33.333 0.00 0.00 38.84 2.69
3078 5019 9.125026 GGATGACAAAATCTGTGTATATCCTTT 57.875 33.333 10.67 0.00 38.84 3.11
3142 5083 6.208599 AGTGAGAAGTGAGGTCAAAACAAAAA 59.791 34.615 0.00 0.00 0.00 1.94
3143 5084 5.710099 AGTGAGAAGTGAGGTCAAAACAAAA 59.290 36.000 0.00 0.00 0.00 2.44
3144 5085 5.123820 CAGTGAGAAGTGAGGTCAAAACAAA 59.876 40.000 0.00 0.00 0.00 2.83
3145 5086 4.635765 CAGTGAGAAGTGAGGTCAAAACAA 59.364 41.667 0.00 0.00 0.00 2.83
3146 5087 4.191544 CAGTGAGAAGTGAGGTCAAAACA 58.808 43.478 0.00 0.00 0.00 2.83
3147 5088 4.192317 ACAGTGAGAAGTGAGGTCAAAAC 58.808 43.478 0.00 0.00 0.00 2.43
3148 5089 4.487714 ACAGTGAGAAGTGAGGTCAAAA 57.512 40.909 0.00 0.00 0.00 2.44
3149 5090 4.162320 AGAACAGTGAGAAGTGAGGTCAAA 59.838 41.667 0.00 0.00 0.00 2.69
3150 5091 3.706594 AGAACAGTGAGAAGTGAGGTCAA 59.293 43.478 0.00 0.00 0.00 3.18
3151 5092 3.068732 CAGAACAGTGAGAAGTGAGGTCA 59.931 47.826 0.00 0.00 0.00 4.02
3152 5093 3.648009 CAGAACAGTGAGAAGTGAGGTC 58.352 50.000 0.00 0.00 0.00 3.85
3187 5128 1.528309 AAAACTGGGCCGTGTCCTG 60.528 57.895 0.00 0.97 32.46 3.86
3188 5129 1.528309 CAAAACTGGGCCGTGTCCT 60.528 57.895 0.00 0.00 0.00 3.85
3189 5130 3.039134 CAAAACTGGGCCGTGTCC 58.961 61.111 0.00 0.00 0.00 4.02
3190 5131 2.335011 GCAAAACTGGGCCGTGTC 59.665 61.111 0.00 0.00 0.00 3.67
3191 5132 3.223589 GGCAAAACTGGGCCGTGT 61.224 61.111 0.00 0.00 40.93 4.49
3224 5165 2.159393 TGACGGCTAAATCATGCTTTGC 60.159 45.455 4.80 6.40 0.00 3.68
3282 6682 1.414061 ATCAGCGGGCTAGGATTGCT 61.414 55.000 0.00 0.00 36.05 3.91
3297 6697 1.269517 GCTCGAGCAAGTAGGGATCAG 60.270 57.143 31.91 0.00 41.59 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.