Multiple sequence alignment - TraesCS1B01G177800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G177800 chr1B 100.000 4808 0 0 1 4808 322479558 322484365 0.000000e+00 8879.0
1 TraesCS1B01G177800 chr1B 96.154 130 4 1 591 720 228160951 228160823 1.360000e-50 211.0
2 TraesCS1B01G177800 chr1B 96.063 127 5 0 591 717 661925231 661925357 1.750000e-49 207.0
3 TraesCS1B01G177800 chr1A 92.950 2610 140 26 844 3426 290198795 290201387 0.000000e+00 3760.0
4 TraesCS1B01G177800 chr1A 93.382 1375 55 16 3459 4808 290201389 290202752 0.000000e+00 2002.0
5 TraesCS1B01G177800 chr1A 94.022 552 28 4 2598 3145 591372687 591373237 0.000000e+00 832.0
6 TraesCS1B01G177800 chr1A 98.374 123 2 0 591 713 353914507 353914385 2.910000e-52 217.0
7 TraesCS1B01G177800 chr1D 93.528 2194 126 12 1956 4137 223168891 223171080 0.000000e+00 3251.0
8 TraesCS1B01G177800 chr1D 91.681 1154 69 9 844 1975 223167730 223168878 0.000000e+00 1574.0
9 TraesCS1B01G177800 chr1D 94.203 690 12 15 4139 4808 223171130 223171811 0.000000e+00 1027.0
10 TraesCS1B01G177800 chr1D 98.246 57 1 0 753 809 223167676 223167732 3.060000e-17 100.0
11 TraesCS1B01G177800 chr7D 93.582 2088 119 11 2061 4137 617969813 617971896 0.000000e+00 3099.0
12 TraesCS1B01G177800 chr7D 94.348 690 11 15 4139 4808 617971946 617972627 0.000000e+00 1033.0
13 TraesCS1B01G177800 chr7D 92.063 252 19 1 1 251 185932003 185931752 2.130000e-93 353.0
14 TraesCS1B01G177800 chr7D 91.700 253 19 2 1 251 81872096 81872348 2.750000e-92 350.0
15 TraesCS1B01G177800 chr7B 90.230 348 30 3 246 592 21606513 21606857 7.340000e-123 451.0
16 TraesCS1B01G177800 chr7B 95.349 86 4 0 815 900 320311113 320311028 2.330000e-28 137.0
17 TraesCS1B01G177800 chr7B 90.816 98 7 2 805 900 9694519 9694616 3.910000e-26 130.0
18 TraesCS1B01G177800 chr3D 90.000 350 31 3 246 592 588680372 588680024 2.640000e-122 449.0
19 TraesCS1B01G177800 chr3D 92.460 252 18 1 1 251 596650885 596651136 4.580000e-95 359.0
20 TraesCS1B01G177800 chr3D 90.323 93 8 1 815 906 315774603 315774511 2.350000e-23 121.0
21 TraesCS1B01G177800 chr6D 89.971 349 30 5 246 592 148622174 148621829 3.410000e-121 446.0
22 TraesCS1B01G177800 chr6D 89.773 352 28 7 246 592 783414 783762 1.230000e-120 444.0
23 TraesCS1B01G177800 chr6D 92.063 252 18 2 1 251 355882446 355882196 2.130000e-93 353.0
24 TraesCS1B01G177800 chr5B 89.385 358 30 7 248 600 701500748 701501102 1.230000e-120 444.0
25 TraesCS1B01G177800 chr5B 92.460 252 18 1 1 251 91530150 91530401 4.580000e-95 359.0
26 TraesCS1B01G177800 chr6B 89.714 350 30 5 247 592 648287839 648287492 4.420000e-120 442.0
27 TraesCS1B01G177800 chr3B 89.714 350 29 6 246 592 685192669 685192324 1.590000e-119 440.0
28 TraesCS1B01G177800 chr3B 92.063 252 19 1 1 251 698197688 698197437 2.130000e-93 353.0
29 TraesCS1B01G177800 chr2D 88.950 362 29 10 243 600 446730853 446731207 2.050000e-118 436.0
30 TraesCS1B01G177800 chr2D 88.889 360 33 7 246 600 527886839 527886482 2.050000e-118 436.0
31 TraesCS1B01G177800 chr2D 92.460 252 18 1 1 251 461852208 461851957 4.580000e-95 359.0
32 TraesCS1B01G177800 chrUn 92.881 295 7 10 4139 4427 480384061 480384347 2.680000e-112 416.0
33 TraesCS1B01G177800 chr7A 85.915 355 38 11 255 601 621907997 621908347 7.600000e-98 368.0
34 TraesCS1B01G177800 chr5D 92.683 246 16 2 1 244 545959449 545959204 2.130000e-93 353.0
35 TraesCS1B01G177800 chr5D 94.186 86 5 0 815 900 385605547 385605632 1.090000e-26 132.0
36 TraesCS1B01G177800 chr4D 91.700 253 18 3 1 251 508428712 508428461 9.900000e-92 348.0
37 TraesCS1B01G177800 chr4B 96.694 121 4 0 591 711 267654187 267654067 8.160000e-48 202.0
38 TraesCS1B01G177800 chr4B 95.200 125 6 0 590 714 12626161 12626037 1.060000e-46 198.0
39 TraesCS1B01G177800 chr4B 88.372 86 10 0 815 900 86753657 86753742 2.370000e-18 104.0
40 TraesCS1B01G177800 chr2A 95.968 124 5 0 591 714 627630337 627630214 8.160000e-48 202.0
41 TraesCS1B01G177800 chr2A 94.186 86 5 0 815 900 715378705 715378620 1.090000e-26 132.0
42 TraesCS1B01G177800 chr2A 89.474 76 8 0 825 900 668018265 668018340 3.960000e-16 97.1
43 TraesCS1B01G177800 chr2A 92.857 56 3 1 852 906 767319472 767319417 3.990000e-11 80.5
44 TraesCS1B01G177800 chr6A 95.238 126 6 0 589 714 585963370 585963245 2.930000e-47 200.0
45 TraesCS1B01G177800 chr6A 94.488 127 7 0 588 714 116339230 116339356 3.800000e-46 196.0
46 TraesCS1B01G177800 chr3A 95.935 123 5 0 591 713 265258823 265258945 2.930000e-47 200.0
47 TraesCS1B01G177800 chr3A 94.444 90 3 2 819 906 17782529 17782618 2.330000e-28 137.0
48 TraesCS1B01G177800 chr3A 89.610 77 8 0 815 891 521727815 521727891 1.100000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G177800 chr1B 322479558 322484365 4807 False 8879 8879 100.0000 1 4808 1 chr1B.!!$F1 4807
1 TraesCS1B01G177800 chr1A 290198795 290202752 3957 False 2881 3760 93.1660 844 4808 2 chr1A.!!$F2 3964
2 TraesCS1B01G177800 chr1A 591372687 591373237 550 False 832 832 94.0220 2598 3145 1 chr1A.!!$F1 547
3 TraesCS1B01G177800 chr1D 223167676 223171811 4135 False 1488 3251 94.4145 753 4808 4 chr1D.!!$F1 4055
4 TraesCS1B01G177800 chr7D 617969813 617972627 2814 False 2066 3099 93.9650 2061 4808 2 chr7D.!!$F2 2747

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
137 138 0.039074 CGCCCTTCACCGCTAGATAG 60.039 60.0 0.00 0.00 0.00 2.08 F
147 148 0.108615 CGCTAGATAGCCATTCCCCG 60.109 60.0 6.28 0.00 46.34 5.73 F
712 713 0.179081 AAGGTAAAGGATCCTCGCGC 60.179 55.0 16.52 5.90 33.09 6.86 F
1213 1241 0.318784 AGTTCTTCCACTCGACGTGC 60.319 55.0 0.00 0.00 42.42 5.34 F
1364 1392 0.583917 GGATTTGCTCGAGCCGATTC 59.416 55.0 33.23 23.78 41.18 2.52 F
2406 2477 1.040646 TCTTGCACGTCCAGTCTTCT 58.959 50.0 0.00 0.00 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1576 1611 0.031585 TCAACGACCGGACAAGACAG 59.968 55.000 9.46 0.00 0.00 3.51 R
1918 1956 0.040603 GCAGAATAAGCCGATGCAGC 60.041 55.000 0.00 0.00 41.13 5.25 R
2204 2274 0.748005 TGGGCTCCGCATTAAGCTTC 60.748 55.000 0.00 0.00 42.61 3.86 R
2550 2621 1.888436 CGTGCCAGGGAGCTAGACAA 61.888 60.000 0.00 0.00 0.00 3.18 R
3268 3348 1.909302 ACCTGCAGGCTATGTGTAACT 59.091 47.619 33.06 5.36 39.32 2.24 R
4167 4305 0.107116 AGGTGTTGTTGTTACCGGCA 60.107 50.000 0.00 0.00 39.46 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.365265 CAAGGGAAAAGCGCGGCT 61.365 61.111 8.83 2.05 42.56 5.52
19 20 3.365265 AAGGGAAAAGCGCGGCTG 61.365 61.111 8.83 0.00 39.62 4.85
37 38 4.314440 GCCCACGCAGTCAGGTGA 62.314 66.667 0.00 0.00 41.61 4.02
38 39 2.425592 CCCACGCAGTCAGGTGAA 59.574 61.111 0.00 0.00 41.61 3.18
39 40 1.227823 CCCACGCAGTCAGGTGAAA 60.228 57.895 0.00 0.00 41.61 2.69
40 41 0.817634 CCCACGCAGTCAGGTGAAAA 60.818 55.000 0.00 0.00 41.61 2.29
41 42 1.021202 CCACGCAGTCAGGTGAAAAA 58.979 50.000 0.00 0.00 41.61 1.94
42 43 1.608590 CCACGCAGTCAGGTGAAAAAT 59.391 47.619 0.00 0.00 41.61 1.82
43 44 2.350772 CCACGCAGTCAGGTGAAAAATC 60.351 50.000 0.00 0.00 41.61 2.17
44 45 2.290367 CACGCAGTCAGGTGAAAAATCA 59.710 45.455 0.00 0.00 41.61 2.57
45 46 2.948979 ACGCAGTCAGGTGAAAAATCAA 59.051 40.909 0.00 0.00 29.74 2.57
46 47 3.003689 ACGCAGTCAGGTGAAAAATCAAG 59.996 43.478 0.00 0.00 29.74 3.02
47 48 3.250762 CGCAGTCAGGTGAAAAATCAAGA 59.749 43.478 0.00 0.00 0.00 3.02
48 49 4.083110 CGCAGTCAGGTGAAAAATCAAGAT 60.083 41.667 0.00 0.00 0.00 2.40
49 50 5.563475 CGCAGTCAGGTGAAAAATCAAGATT 60.563 40.000 0.00 0.00 0.00 2.40
50 51 6.218746 GCAGTCAGGTGAAAAATCAAGATTT 58.781 36.000 2.31 2.31 42.35 2.17
66 67 2.032987 TTTTTCCCCCGACTCGCC 59.967 61.111 0.00 0.00 0.00 5.54
67 68 2.522367 TTTTTCCCCCGACTCGCCT 61.522 57.895 0.00 0.00 0.00 5.52
68 69 2.459202 TTTTTCCCCCGACTCGCCTC 62.459 60.000 0.00 0.00 0.00 4.70
100 101 3.217017 CTCGGCGGCCACTAGCTA 61.217 66.667 20.71 0.00 43.05 3.32
101 102 2.520982 TCGGCGGCCACTAGCTAT 60.521 61.111 20.71 0.00 43.05 2.97
102 103 1.228337 TCGGCGGCCACTAGCTATA 60.228 57.895 20.71 0.00 43.05 1.31
103 104 0.611062 TCGGCGGCCACTAGCTATAT 60.611 55.000 20.71 0.00 43.05 0.86
104 105 0.179134 CGGCGGCCACTAGCTATATC 60.179 60.000 20.71 0.00 43.05 1.63
105 106 0.175989 GGCGGCCACTAGCTATATCC 59.824 60.000 15.62 0.00 43.05 2.59
106 107 0.175989 GCGGCCACTAGCTATATCCC 59.824 60.000 2.24 0.00 43.05 3.85
107 108 0.456221 CGGCCACTAGCTATATCCCG 59.544 60.000 2.24 1.25 43.05 5.14
108 109 0.175989 GGCCACTAGCTATATCCCGC 59.824 60.000 0.00 0.00 43.05 6.13
109 110 0.179134 GCCACTAGCTATATCCCGCG 60.179 60.000 0.00 0.00 38.99 6.46
110 111 0.179134 CCACTAGCTATATCCCGCGC 60.179 60.000 0.00 0.00 0.00 6.86
111 112 0.179134 CACTAGCTATATCCCGCGCC 60.179 60.000 0.00 0.00 0.00 6.53
112 113 0.611062 ACTAGCTATATCCCGCGCCA 60.611 55.000 0.00 0.00 0.00 5.69
113 114 0.179134 CTAGCTATATCCCGCGCCAC 60.179 60.000 0.00 0.00 0.00 5.01
114 115 1.601419 TAGCTATATCCCGCGCCACC 61.601 60.000 0.00 0.00 0.00 4.61
115 116 2.264794 CTATATCCCGCGCCACCC 59.735 66.667 0.00 0.00 0.00 4.61
116 117 3.642778 CTATATCCCGCGCCACCCG 62.643 68.421 0.00 0.00 40.75 5.28
134 135 3.458163 CCGCCCTTCACCGCTAGA 61.458 66.667 0.00 0.00 0.00 2.43
135 136 2.797278 CCGCCCTTCACCGCTAGAT 61.797 63.158 0.00 0.00 0.00 1.98
136 137 1.461091 CCGCCCTTCACCGCTAGATA 61.461 60.000 0.00 0.00 0.00 1.98
137 138 0.039074 CGCCCTTCACCGCTAGATAG 60.039 60.000 0.00 0.00 0.00 2.08
138 139 0.319986 GCCCTTCACCGCTAGATAGC 60.320 60.000 1.59 1.59 45.62 2.97
139 140 0.318762 CCCTTCACCGCTAGATAGCC 59.681 60.000 6.28 0.00 46.34 3.93
140 141 1.040646 CCTTCACCGCTAGATAGCCA 58.959 55.000 6.28 0.00 46.34 4.75
141 142 1.620819 CCTTCACCGCTAGATAGCCAT 59.379 52.381 6.28 0.00 46.34 4.40
142 143 2.037772 CCTTCACCGCTAGATAGCCATT 59.962 50.000 6.28 0.00 46.34 3.16
143 144 3.321497 CTTCACCGCTAGATAGCCATTC 58.679 50.000 6.28 0.00 46.34 2.67
144 145 1.618837 TCACCGCTAGATAGCCATTCC 59.381 52.381 6.28 0.00 46.34 3.01
145 146 0.977395 ACCGCTAGATAGCCATTCCC 59.023 55.000 6.28 0.00 46.34 3.97
146 147 0.250513 CCGCTAGATAGCCATTCCCC 59.749 60.000 6.28 0.00 46.34 4.81
147 148 0.108615 CGCTAGATAGCCATTCCCCG 60.109 60.000 6.28 0.00 46.34 5.73
148 149 0.391793 GCTAGATAGCCATTCCCCGC 60.392 60.000 0.09 0.00 43.39 6.13
149 150 0.250513 CTAGATAGCCATTCCCCGCC 59.749 60.000 0.00 0.00 0.00 6.13
150 151 1.541310 TAGATAGCCATTCCCCGCCG 61.541 60.000 0.00 0.00 0.00 6.46
151 152 2.847234 ATAGCCATTCCCCGCCGA 60.847 61.111 0.00 0.00 0.00 5.54
152 153 2.391724 GATAGCCATTCCCCGCCGAA 62.392 60.000 0.00 0.00 0.00 4.30
153 154 1.990160 ATAGCCATTCCCCGCCGAAA 61.990 55.000 0.00 0.00 0.00 3.46
154 155 2.199613 TAGCCATTCCCCGCCGAAAA 62.200 55.000 0.00 0.00 0.00 2.29
155 156 2.641277 GCCATTCCCCGCCGAAAAA 61.641 57.895 0.00 0.00 0.00 1.94
172 173 1.369625 AAAATAGCAGAGGTTCGCCG 58.630 50.000 0.00 0.00 43.66 6.46
173 174 1.090052 AAATAGCAGAGGTTCGCCGC 61.090 55.000 0.00 0.00 43.66 6.53
174 175 2.238847 AATAGCAGAGGTTCGCCGCA 62.239 55.000 0.00 0.00 43.66 5.69
175 176 2.635229 ATAGCAGAGGTTCGCCGCAG 62.635 60.000 0.00 0.00 43.66 5.18
178 179 4.749310 AGAGGTTCGCCGCAGCAG 62.749 66.667 0.00 0.00 43.66 4.24
189 190 4.082523 GCAGCAGGCCCTACGACA 62.083 66.667 0.00 0.00 36.11 4.35
190 191 2.185350 CAGCAGGCCCTACGACAG 59.815 66.667 0.00 0.00 0.00 3.51
191 192 3.775654 AGCAGGCCCTACGACAGC 61.776 66.667 0.00 0.00 0.00 4.40
192 193 4.082523 GCAGGCCCTACGACAGCA 62.083 66.667 0.00 0.00 0.00 4.41
193 194 2.185350 CAGGCCCTACGACAGCAG 59.815 66.667 0.00 0.00 0.00 4.24
194 195 2.283966 AGGCCCTACGACAGCAGT 60.284 61.111 0.00 0.00 0.00 4.40
195 196 1.913762 AGGCCCTACGACAGCAGTT 60.914 57.895 0.00 0.00 0.00 3.16
196 197 1.741770 GGCCCTACGACAGCAGTTG 60.742 63.158 0.00 0.00 35.14 3.16
197 198 1.741770 GCCCTACGACAGCAGTTGG 60.742 63.158 1.14 0.00 34.93 3.77
198 199 1.079127 CCCTACGACAGCAGTTGGG 60.079 63.158 1.14 4.42 45.30 4.12
199 200 1.741770 CCTACGACAGCAGTTGGGC 60.742 63.158 1.14 0.00 33.15 5.36
200 201 2.048597 TACGACAGCAGTTGGGCG 60.049 61.111 1.14 0.00 39.27 6.13
201 202 2.765250 CTACGACAGCAGTTGGGCGT 62.765 60.000 11.10 11.10 42.12 5.68
202 203 2.372040 TACGACAGCAGTTGGGCGTT 62.372 55.000 11.47 0.00 40.63 4.84
203 204 2.542907 CGACAGCAGTTGGGCGTTT 61.543 57.895 0.00 0.00 39.27 3.60
204 205 1.282875 GACAGCAGTTGGGCGTTTC 59.717 57.895 0.00 0.00 39.27 2.78
205 206 2.130073 GACAGCAGTTGGGCGTTTCC 62.130 60.000 0.00 0.00 39.27 3.13
206 207 2.978010 AGCAGTTGGGCGTTTCCG 60.978 61.111 0.00 0.00 39.27 4.30
207 208 4.038080 GCAGTTGGGCGTTTCCGG 62.038 66.667 0.00 0.00 34.94 5.14
225 226 3.074281 CCGTGGAGGGGCAGTTTA 58.926 61.111 0.00 0.00 35.97 2.01
226 227 1.078426 CCGTGGAGGGGCAGTTTAG 60.078 63.158 0.00 0.00 35.97 1.85
227 228 1.745489 CGTGGAGGGGCAGTTTAGC 60.745 63.158 0.00 0.00 0.00 3.09
228 229 1.745489 GTGGAGGGGCAGTTTAGCG 60.745 63.158 0.00 0.00 34.64 4.26
229 230 2.124695 GGAGGGGCAGTTTAGCGG 60.125 66.667 0.00 0.00 34.64 5.52
230 231 2.824489 GAGGGGCAGTTTAGCGGC 60.824 66.667 0.00 0.00 37.57 6.53
231 232 4.778143 AGGGGCAGTTTAGCGGCG 62.778 66.667 0.51 0.51 39.22 6.46
235 236 3.799755 GCAGTTTAGCGGCGGGTG 61.800 66.667 9.78 0.00 0.00 4.61
236 237 3.799755 CAGTTTAGCGGCGGGTGC 61.800 66.667 9.78 0.00 41.71 5.01
237 238 4.323477 AGTTTAGCGGCGGGTGCA 62.323 61.111 9.78 0.00 45.35 4.57
238 239 4.097863 GTTTAGCGGCGGGTGCAC 62.098 66.667 8.80 8.80 45.35 4.57
258 259 4.735132 CCATCGGGCGACACGTGT 62.735 66.667 23.64 23.64 0.00 4.49
259 260 3.478394 CATCGGGCGACACGTGTG 61.478 66.667 28.82 18.75 0.00 3.82
260 261 3.676605 ATCGGGCGACACGTGTGA 61.677 61.111 28.82 17.07 0.00 3.58
261 262 3.001902 ATCGGGCGACACGTGTGAT 62.002 57.895 28.82 18.65 0.00 3.06
262 263 3.478394 CGGGCGACACGTGTGATG 61.478 66.667 28.82 16.42 0.00 3.07
263 264 2.048597 GGGCGACACGTGTGATGA 60.049 61.111 28.82 0.00 0.00 2.92
264 265 1.666553 GGGCGACACGTGTGATGAA 60.667 57.895 28.82 0.00 0.00 2.57
265 266 1.225376 GGGCGACACGTGTGATGAAA 61.225 55.000 28.82 0.00 0.00 2.69
266 267 0.796312 GGCGACACGTGTGATGAAAT 59.204 50.000 28.82 0.00 0.00 2.17
267 268 1.996898 GGCGACACGTGTGATGAAATA 59.003 47.619 28.82 0.00 0.00 1.40
268 269 2.607635 GGCGACACGTGTGATGAAATAT 59.392 45.455 28.82 0.00 0.00 1.28
269 270 3.544048 GGCGACACGTGTGATGAAATATG 60.544 47.826 28.82 3.60 0.00 1.78
270 271 3.305897 GCGACACGTGTGATGAAATATGA 59.694 43.478 28.82 0.00 0.00 2.15
271 272 4.548916 GCGACACGTGTGATGAAATATGAG 60.549 45.833 28.82 2.18 0.00 2.90
272 273 4.562789 CGACACGTGTGATGAAATATGAGT 59.437 41.667 28.82 0.00 0.00 3.41
273 274 5.062183 CGACACGTGTGATGAAATATGAGTT 59.938 40.000 28.82 0.00 0.00 3.01
274 275 6.401047 CGACACGTGTGATGAAATATGAGTTT 60.401 38.462 28.82 0.00 0.00 2.66
275 276 7.202016 ACACGTGTGATGAAATATGAGTTTT 57.798 32.000 22.71 0.00 0.00 2.43
276 277 7.648142 ACACGTGTGATGAAATATGAGTTTTT 58.352 30.769 22.71 0.00 0.00 1.94
277 278 8.779303 ACACGTGTGATGAAATATGAGTTTTTA 58.221 29.630 22.71 0.00 0.00 1.52
278 279 9.773328 CACGTGTGATGAAATATGAGTTTTTAT 57.227 29.630 7.58 0.00 0.00 1.40
335 336 9.915629 TTTGTTGTTGTACTATTTTGTTGAAGT 57.084 25.926 0.00 0.00 0.00 3.01
402 403 5.818136 TGTTGATAATTGAACAGCCTAGC 57.182 39.130 0.00 0.00 0.00 3.42
403 404 4.640201 TGTTGATAATTGAACAGCCTAGCC 59.360 41.667 0.00 0.00 0.00 3.93
404 405 4.502105 TGATAATTGAACAGCCTAGCCA 57.498 40.909 0.00 0.00 0.00 4.75
405 406 4.199310 TGATAATTGAACAGCCTAGCCAC 58.801 43.478 0.00 0.00 0.00 5.01
406 407 1.453155 AATTGAACAGCCTAGCCACG 58.547 50.000 0.00 0.00 0.00 4.94
407 408 0.392998 ATTGAACAGCCTAGCCACGG 60.393 55.000 0.00 0.00 0.00 4.94
426 427 2.966324 CGAACCACGCCGAATATGA 58.034 52.632 0.00 0.00 34.51 2.15
427 428 0.852777 CGAACCACGCCGAATATGAG 59.147 55.000 0.00 0.00 34.51 2.90
428 429 0.582005 GAACCACGCCGAATATGAGC 59.418 55.000 0.00 0.00 0.00 4.26
429 430 0.814010 AACCACGCCGAATATGAGCC 60.814 55.000 0.00 0.00 0.00 4.70
430 431 1.069765 CCACGCCGAATATGAGCCT 59.930 57.895 0.00 0.00 0.00 4.58
431 432 0.317160 CCACGCCGAATATGAGCCTA 59.683 55.000 0.00 0.00 0.00 3.93
432 433 1.066858 CCACGCCGAATATGAGCCTAT 60.067 52.381 0.00 0.00 0.00 2.57
433 434 2.612972 CCACGCCGAATATGAGCCTATT 60.613 50.000 0.00 0.00 0.00 1.73
434 435 2.668457 CACGCCGAATATGAGCCTATTC 59.332 50.000 0.00 0.00 35.61 1.75
435 436 2.563179 ACGCCGAATATGAGCCTATTCT 59.437 45.455 0.00 0.00 36.42 2.40
436 437 3.182967 CGCCGAATATGAGCCTATTCTC 58.817 50.000 8.70 0.00 36.42 2.87
437 438 3.119316 CGCCGAATATGAGCCTATTCTCT 60.119 47.826 8.70 0.00 36.42 3.10
438 439 4.429108 GCCGAATATGAGCCTATTCTCTC 58.571 47.826 8.70 0.00 36.42 3.20
439 440 4.159506 GCCGAATATGAGCCTATTCTCTCT 59.840 45.833 8.70 0.00 36.42 3.10
440 441 5.678616 GCCGAATATGAGCCTATTCTCTCTC 60.679 48.000 8.70 0.00 36.42 3.20
441 442 5.417266 CCGAATATGAGCCTATTCTCTCTCA 59.583 44.000 8.70 0.00 39.54 3.27
442 443 6.096705 CCGAATATGAGCCTATTCTCTCTCAT 59.903 42.308 8.39 8.39 45.21 2.90
443 444 7.284261 CCGAATATGAGCCTATTCTCTCTCATA 59.716 40.741 11.64 11.64 46.32 2.15
446 447 6.795144 ATGAGCCTATTCTCTCTCATATGG 57.205 41.667 2.13 0.00 42.52 2.74
447 448 5.022122 TGAGCCTATTCTCTCTCATATGGG 58.978 45.833 2.13 0.00 34.29 4.00
448 449 3.774216 AGCCTATTCTCTCTCATATGGGC 59.226 47.826 2.13 3.64 42.85 5.36
449 450 3.774216 GCCTATTCTCTCTCATATGGGCT 59.226 47.826 2.13 0.00 40.34 5.19
450 451 4.224818 GCCTATTCTCTCTCATATGGGCTT 59.775 45.833 2.13 0.00 40.34 4.35
451 452 5.280419 GCCTATTCTCTCTCATATGGGCTTT 60.280 44.000 2.13 0.00 40.34 3.51
452 453 6.070538 GCCTATTCTCTCTCATATGGGCTTTA 60.071 42.308 2.13 0.00 40.34 1.85
453 454 7.365473 GCCTATTCTCTCTCATATGGGCTTTAT 60.365 40.741 2.13 0.00 40.34 1.40
454 455 8.547173 CCTATTCTCTCTCATATGGGCTTTATT 58.453 37.037 2.13 0.00 0.00 1.40
455 456 9.598517 CTATTCTCTCTCATATGGGCTTTATTC 57.401 37.037 2.13 0.00 0.00 1.75
456 457 6.030548 TCTCTCTCATATGGGCTTTATTCG 57.969 41.667 2.13 0.00 0.00 3.34
457 458 4.569943 TCTCTCATATGGGCTTTATTCGC 58.430 43.478 2.13 0.00 0.00 4.70
458 459 3.674997 TCTCATATGGGCTTTATTCGCC 58.325 45.455 2.13 0.00 46.83 5.54
465 466 2.119671 GGCTTTATTCGCCGAAATGG 57.880 50.000 2.60 0.00 37.87 3.16
466 467 1.269051 GGCTTTATTCGCCGAAATGGG 60.269 52.381 2.60 0.00 37.87 4.00
474 475 4.432601 CCGAAATGGGGCTGGAAA 57.567 55.556 0.00 0.00 0.00 3.13
475 476 2.664825 CCGAAATGGGGCTGGAAAA 58.335 52.632 0.00 0.00 0.00 2.29
476 477 1.194218 CCGAAATGGGGCTGGAAAAT 58.806 50.000 0.00 0.00 0.00 1.82
477 478 1.134729 CCGAAATGGGGCTGGAAAATG 60.135 52.381 0.00 0.00 0.00 2.32
478 479 1.134729 CGAAATGGGGCTGGAAAATGG 60.135 52.381 0.00 0.00 0.00 3.16
479 480 1.210234 GAAATGGGGCTGGAAAATGGG 59.790 52.381 0.00 0.00 0.00 4.00
480 481 1.273986 AATGGGGCTGGAAAATGGGC 61.274 55.000 0.00 0.00 0.00 5.36
481 482 3.083349 GGGGCTGGAAAATGGGCC 61.083 66.667 0.00 0.00 43.68 5.80
482 483 2.284552 GGGCTGGAAAATGGGCCA 60.285 61.111 9.61 9.61 45.68 5.36
483 484 1.917787 GGGCTGGAAAATGGGCCAA 60.918 57.895 11.89 0.00 45.68 4.52
484 485 1.296392 GGCTGGAAAATGGGCCAAC 59.704 57.895 11.89 2.31 43.59 3.77
485 486 1.479368 GGCTGGAAAATGGGCCAACA 61.479 55.000 11.89 4.13 43.59 3.33
486 487 0.614812 GCTGGAAAATGGGCCAACAT 59.385 50.000 11.89 0.00 32.95 2.71
487 488 1.405933 GCTGGAAAATGGGCCAACATC 60.406 52.381 11.89 8.87 32.95 3.06
488 489 0.894141 TGGAAAATGGGCCAACATCG 59.106 50.000 11.89 0.00 0.00 3.84
489 490 1.181786 GGAAAATGGGCCAACATCGA 58.818 50.000 11.89 0.00 0.00 3.59
490 491 1.135112 GGAAAATGGGCCAACATCGAC 60.135 52.381 11.89 0.00 0.00 4.20
491 492 0.525761 AAAATGGGCCAACATCGACG 59.474 50.000 11.89 0.00 0.00 5.12
492 493 1.933115 AAATGGGCCAACATCGACGC 61.933 55.000 11.89 0.00 0.00 5.19
494 495 4.778143 GGGCCAACATCGACGCCT 62.778 66.667 4.39 0.00 41.35 5.52
495 496 3.499737 GGCCAACATCGACGCCTG 61.500 66.667 0.00 0.00 38.41 4.85
496 497 2.434185 GCCAACATCGACGCCTGA 60.434 61.111 0.00 0.00 0.00 3.86
497 498 2.456119 GCCAACATCGACGCCTGAG 61.456 63.158 0.00 0.00 0.00 3.35
498 499 1.811266 CCAACATCGACGCCTGAGG 60.811 63.158 0.00 0.00 0.00 3.86
499 500 1.215382 CAACATCGACGCCTGAGGA 59.785 57.895 0.65 0.00 0.00 3.71
500 501 1.078759 CAACATCGACGCCTGAGGAC 61.079 60.000 0.65 0.00 0.00 3.85
501 502 2.278206 CATCGACGCCTGAGGACG 60.278 66.667 0.65 8.34 0.00 4.79
502 503 2.437895 ATCGACGCCTGAGGACGA 60.438 61.111 19.25 17.19 37.39 4.20
503 504 2.473760 ATCGACGCCTGAGGACGAG 61.474 63.158 19.25 13.10 36.49 4.18
504 505 4.838486 CGACGCCTGAGGACGAGC 62.838 72.222 19.25 10.90 0.00 5.03
505 506 3.444805 GACGCCTGAGGACGAGCT 61.445 66.667 19.25 0.00 0.00 4.09
506 507 3.691744 GACGCCTGAGGACGAGCTG 62.692 68.421 19.25 0.00 0.00 4.24
507 508 4.504916 CGCCTGAGGACGAGCTGG 62.505 72.222 0.65 0.00 0.00 4.85
508 509 4.154347 GCCTGAGGACGAGCTGGG 62.154 72.222 0.65 0.00 0.00 4.45
509 510 3.465403 CCTGAGGACGAGCTGGGG 61.465 72.222 0.00 0.00 0.00 4.96
510 511 2.363018 CTGAGGACGAGCTGGGGA 60.363 66.667 0.00 0.00 0.00 4.81
511 512 2.680352 TGAGGACGAGCTGGGGAC 60.680 66.667 0.00 0.00 0.00 4.46
512 513 3.827898 GAGGACGAGCTGGGGACG 61.828 72.222 0.00 0.00 0.00 4.79
513 514 4.361971 AGGACGAGCTGGGGACGA 62.362 66.667 0.00 0.00 0.00 4.20
514 515 4.131088 GGACGAGCTGGGGACGAC 62.131 72.222 0.00 0.00 0.00 4.34
515 516 4.477975 GACGAGCTGGGGACGACG 62.478 72.222 0.00 0.00 0.00 5.12
517 518 4.477975 CGAGCTGGGGACGACGAC 62.478 72.222 0.00 0.00 0.00 4.34
518 519 3.063084 GAGCTGGGGACGACGACT 61.063 66.667 0.00 0.00 0.00 4.18
519 520 3.343788 GAGCTGGGGACGACGACTG 62.344 68.421 0.00 0.00 0.00 3.51
520 521 4.436998 GCTGGGGACGACGACTGG 62.437 72.222 0.00 0.00 0.00 4.00
521 522 3.760035 CTGGGGACGACGACTGGG 61.760 72.222 0.00 0.00 0.00 4.45
524 525 4.736896 GGGACGACGACTGGGCAC 62.737 72.222 0.00 0.00 0.00 5.01
525 526 3.986006 GGACGACGACTGGGCACA 61.986 66.667 0.00 0.00 0.00 4.57
526 527 2.028484 GACGACGACTGGGCACAA 59.972 61.111 0.00 0.00 0.00 3.33
527 528 1.593209 GACGACGACTGGGCACAAA 60.593 57.895 0.00 0.00 0.00 2.83
528 529 1.153329 ACGACGACTGGGCACAAAA 60.153 52.632 0.00 0.00 0.00 2.44
529 530 1.278637 CGACGACTGGGCACAAAAC 59.721 57.895 0.00 0.00 0.00 2.43
530 531 1.652563 GACGACTGGGCACAAAACC 59.347 57.895 0.00 0.00 0.00 3.27
531 532 2.113131 GACGACTGGGCACAAAACCG 62.113 60.000 0.00 0.00 0.00 4.44
532 533 2.335011 GACTGGGCACAAAACCGC 59.665 61.111 0.00 0.00 0.00 5.68
537 538 3.541713 GGCACAAAACCGCCCCAA 61.542 61.111 0.00 0.00 42.82 4.12
538 539 2.279851 GCACAAAACCGCCCCAAC 60.280 61.111 0.00 0.00 0.00 3.77
539 540 2.026879 CACAAAACCGCCCCAACG 59.973 61.111 0.00 0.00 0.00 4.10
540 541 3.906879 ACAAAACCGCCCCAACGC 61.907 61.111 0.00 0.00 0.00 4.84
541 542 4.656117 CAAAACCGCCCCAACGCC 62.656 66.667 0.00 0.00 0.00 5.68
548 549 2.437002 GCCCCAACGCCGAATGTA 60.437 61.111 0.00 0.00 0.00 2.29
549 550 1.822186 GCCCCAACGCCGAATGTAT 60.822 57.895 0.00 0.00 0.00 2.29
550 551 1.381165 GCCCCAACGCCGAATGTATT 61.381 55.000 0.00 0.00 0.00 1.89
551 552 0.380378 CCCCAACGCCGAATGTATTG 59.620 55.000 0.00 0.00 0.00 1.90
552 553 0.248458 CCCAACGCCGAATGTATTGC 60.248 55.000 0.00 0.00 0.00 3.56
553 554 0.248458 CCAACGCCGAATGTATTGCC 60.248 55.000 0.00 0.00 0.00 4.52
554 555 0.588730 CAACGCCGAATGTATTGCCG 60.589 55.000 0.00 0.00 0.00 5.69
555 556 1.711060 AACGCCGAATGTATTGCCGG 61.711 55.000 0.00 0.00 44.34 6.13
557 558 4.141144 CCGAATGTATTGCCGGCT 57.859 55.556 29.70 11.31 35.29 5.52
558 559 1.941812 CCGAATGTATTGCCGGCTC 59.058 57.895 29.70 13.94 35.29 4.70
559 560 0.813610 CCGAATGTATTGCCGGCTCA 60.814 55.000 29.70 20.43 35.29 4.26
560 561 0.304705 CGAATGTATTGCCGGCTCAC 59.695 55.000 29.70 21.57 0.00 3.51
561 562 0.663153 GAATGTATTGCCGGCTCACC 59.337 55.000 29.70 13.64 0.00 4.02
562 563 0.751643 AATGTATTGCCGGCTCACCC 60.752 55.000 29.70 12.14 0.00 4.61
563 564 1.635817 ATGTATTGCCGGCTCACCCT 61.636 55.000 29.70 9.57 0.00 4.34
564 565 1.523938 GTATTGCCGGCTCACCCTC 60.524 63.158 29.70 7.81 0.00 4.30
565 566 1.992834 TATTGCCGGCTCACCCTCA 60.993 57.895 29.70 0.07 0.00 3.86
566 567 1.558167 TATTGCCGGCTCACCCTCAA 61.558 55.000 29.70 11.34 0.00 3.02
567 568 2.826777 ATTGCCGGCTCACCCTCAAG 62.827 60.000 29.70 0.00 30.72 3.02
568 569 4.785453 GCCGGCTCACCCTCAAGG 62.785 72.222 22.15 0.00 43.78 3.61
583 584 4.423732 CCTCAAGGGACAATTTTTATGCG 58.576 43.478 0.00 0.00 37.23 4.73
584 585 4.082245 CCTCAAGGGACAATTTTTATGCGT 60.082 41.667 0.00 0.00 37.23 5.24
585 586 5.054390 TCAAGGGACAATTTTTATGCGTC 57.946 39.130 0.00 0.00 0.00 5.19
586 587 4.082463 TCAAGGGACAATTTTTATGCGTCC 60.082 41.667 0.00 0.00 44.45 4.79
587 588 3.697166 AGGGACAATTTTTATGCGTCCT 58.303 40.909 6.82 0.00 44.56 3.85
588 589 3.443681 AGGGACAATTTTTATGCGTCCTG 59.556 43.478 6.82 0.00 44.56 3.86
589 590 3.428862 GGGACAATTTTTATGCGTCCTGG 60.429 47.826 6.82 0.00 44.56 4.45
590 591 3.428862 GGACAATTTTTATGCGTCCTGGG 60.429 47.826 0.00 0.00 42.37 4.45
591 592 2.495669 ACAATTTTTATGCGTCCTGGGG 59.504 45.455 0.00 0.00 0.00 4.96
592 593 2.757868 CAATTTTTATGCGTCCTGGGGA 59.242 45.455 0.00 0.00 0.00 4.81
603 604 3.775654 CTGGGGACACGGCTCCTC 61.776 72.222 0.00 0.00 35.60 3.71
604 605 4.316823 TGGGGACACGGCTCCTCT 62.317 66.667 2.47 0.00 31.07 3.69
605 606 3.775654 GGGGACACGGCTCCTCTG 61.776 72.222 1.08 0.00 0.00 3.35
606 607 4.459089 GGGACACGGCTCCTCTGC 62.459 72.222 1.08 0.00 0.00 4.26
613 614 4.874977 GGCTCCTCTGCCGTACGC 62.875 72.222 10.49 6.24 43.74 4.42
614 615 3.827898 GCTCCTCTGCCGTACGCT 61.828 66.667 10.49 0.00 38.78 5.07
615 616 2.478890 GCTCCTCTGCCGTACGCTA 61.479 63.158 10.49 0.00 38.78 4.26
616 617 1.649815 CTCCTCTGCCGTACGCTAG 59.350 63.158 10.49 10.08 38.78 3.42
617 618 1.787057 CTCCTCTGCCGTACGCTAGG 61.787 65.000 10.49 12.67 40.68 3.02
618 619 2.119655 CCTCTGCCGTACGCTAGGT 61.120 63.158 10.49 0.00 36.87 3.08
619 620 1.064296 CTCTGCCGTACGCTAGGTG 59.936 63.158 10.49 0.00 38.78 4.00
620 621 1.374343 CTCTGCCGTACGCTAGGTGA 61.374 60.000 10.49 1.03 38.78 4.02
621 622 1.226603 CTGCCGTACGCTAGGTGAC 60.227 63.158 10.49 0.00 38.78 3.67
622 623 2.277756 GCCGTACGCTAGGTGACG 60.278 66.667 10.49 0.00 35.12 4.35
623 624 3.044059 GCCGTACGCTAGGTGACGT 62.044 63.158 10.49 0.00 45.85 4.34
624 625 1.503542 CCGTACGCTAGGTGACGTT 59.496 57.895 10.49 0.00 43.35 3.99
625 626 0.795735 CCGTACGCTAGGTGACGTTG 60.796 60.000 10.49 0.00 43.35 4.10
626 627 0.795735 CGTACGCTAGGTGACGTTGG 60.796 60.000 0.52 0.00 43.35 3.77
627 628 0.457337 GTACGCTAGGTGACGTTGGG 60.457 60.000 0.00 2.73 43.35 4.12
628 629 2.216750 TACGCTAGGTGACGTTGGGC 62.217 60.000 4.03 0.00 43.35 5.36
629 630 2.436115 GCTAGGTGACGTTGGGCC 60.436 66.667 0.00 0.00 0.00 5.80
630 631 3.065306 CTAGGTGACGTTGGGCCA 58.935 61.111 0.00 0.00 0.00 5.36
631 632 1.375523 CTAGGTGACGTTGGGCCAC 60.376 63.158 5.23 0.00 0.00 5.01
632 633 1.827399 CTAGGTGACGTTGGGCCACT 61.827 60.000 5.23 0.00 0.00 4.00
633 634 2.107041 TAGGTGACGTTGGGCCACTG 62.107 60.000 5.23 3.70 0.00 3.66
634 635 2.110213 GTGACGTTGGGCCACTGA 59.890 61.111 5.23 0.00 0.00 3.41
635 636 2.110213 TGACGTTGGGCCACTGAC 59.890 61.111 5.23 0.00 0.00 3.51
636 637 2.110213 GACGTTGGGCCACTGACA 59.890 61.111 5.23 0.00 0.00 3.58
637 638 1.302511 GACGTTGGGCCACTGACAT 60.303 57.895 5.23 0.00 0.00 3.06
638 639 1.577328 GACGTTGGGCCACTGACATG 61.577 60.000 5.23 0.00 0.00 3.21
639 640 1.600636 CGTTGGGCCACTGACATGT 60.601 57.895 5.23 0.00 0.00 3.21
640 641 1.855213 CGTTGGGCCACTGACATGTG 61.855 60.000 5.23 0.00 37.66 3.21
646 647 4.749323 CACTGACATGTGGGCCAT 57.251 55.556 10.70 0.00 34.56 4.40
653 654 1.899617 CATGTGGGCCATGTTTCCC 59.100 57.895 10.70 7.72 44.96 3.97
657 658 3.698765 GGGCCATGTTTCCCACAG 58.301 61.111 4.39 0.00 42.18 3.66
658 659 1.984026 GGGCCATGTTTCCCACAGG 60.984 63.158 4.39 0.00 42.18 4.00
659 660 2.649129 GGCCATGTTTCCCACAGGC 61.649 63.158 0.00 0.00 43.61 4.85
660 661 2.649129 GCCATGTTTCCCACAGGCC 61.649 63.158 0.00 0.00 40.85 5.19
661 662 1.984026 CCATGTTTCCCACAGGCCC 60.984 63.158 0.00 0.00 39.40 5.80
662 663 1.228831 CATGTTTCCCACAGGCCCA 60.229 57.895 0.00 0.00 39.40 5.36
663 664 1.228862 ATGTTTCCCACAGGCCCAC 60.229 57.895 0.00 0.00 39.40 4.61
664 665 2.017668 ATGTTTCCCACAGGCCCACA 62.018 55.000 0.00 0.00 39.40 4.17
665 666 1.228862 GTTTCCCACAGGCCCACAT 60.229 57.895 0.00 0.00 0.00 3.21
666 667 1.228831 TTTCCCACAGGCCCACATG 60.229 57.895 0.00 0.00 0.00 3.21
667 668 2.017668 TTTCCCACAGGCCCACATGT 62.018 55.000 0.00 0.00 0.00 3.21
668 669 2.361610 CCCACAGGCCCACATGTC 60.362 66.667 0.00 0.00 0.00 3.06
669 670 2.435663 CCACAGGCCCACATGTCA 59.564 61.111 0.00 0.00 0.00 3.58
670 671 1.676635 CCACAGGCCCACATGTCAG 60.677 63.158 0.00 0.00 0.00 3.51
671 672 1.073722 CACAGGCCCACATGTCAGT 59.926 57.895 0.00 0.00 0.00 3.41
672 673 1.073722 ACAGGCCCACATGTCAGTG 59.926 57.895 0.00 0.00 39.21 3.66
681 682 2.337583 CACATGTCAGTGGTAGAACGG 58.662 52.381 0.00 0.00 35.88 4.44
682 683 1.337823 ACATGTCAGTGGTAGAACGGC 60.338 52.381 0.00 0.00 0.00 5.68
683 684 0.973632 ATGTCAGTGGTAGAACGGCA 59.026 50.000 0.00 0.00 0.00 5.69
684 685 0.317160 TGTCAGTGGTAGAACGGCAG 59.683 55.000 0.00 0.00 0.00 4.85
685 686 0.389948 GTCAGTGGTAGAACGGCAGG 60.390 60.000 0.00 0.00 0.00 4.85
686 687 1.741770 CAGTGGTAGAACGGCAGGC 60.742 63.158 0.00 0.00 0.00 4.85
687 688 1.913762 AGTGGTAGAACGGCAGGCT 60.914 57.895 0.00 0.00 0.00 4.58
688 689 1.741770 GTGGTAGAACGGCAGGCTG 60.742 63.158 10.94 10.94 0.00 4.85
689 690 2.820037 GGTAGAACGGCAGGCTGC 60.820 66.667 30.93 30.93 44.08 5.25
710 711 2.202566 CGAAAGGTAAAGGATCCTCGC 58.797 52.381 16.52 8.14 33.09 5.03
711 712 2.202566 GAAAGGTAAAGGATCCTCGCG 58.797 52.381 16.52 0.00 33.09 5.87
712 713 0.179081 AAGGTAAAGGATCCTCGCGC 60.179 55.000 16.52 5.90 33.09 6.86
713 714 1.949631 GGTAAAGGATCCTCGCGCG 60.950 63.158 26.76 26.76 0.00 6.86
714 715 2.279252 TAAAGGATCCTCGCGCGC 60.279 61.111 27.95 23.91 0.00 6.86
731 732 4.760047 CGTCCTGGAGGCCAACGG 62.760 72.222 5.01 1.26 35.06 4.44
732 733 3.637273 GTCCTGGAGGCCAACGGT 61.637 66.667 5.01 0.00 30.80 4.83
733 734 2.852075 TCCTGGAGGCCAACGGTT 60.852 61.111 5.01 0.00 30.80 4.44
734 735 2.672996 CCTGGAGGCCAACGGTTG 60.673 66.667 13.86 13.86 30.80 3.77
744 745 3.540211 CAACGGTTGGAGATGCTCT 57.460 52.632 13.03 0.00 0.00 4.09
745 746 1.813513 CAACGGTTGGAGATGCTCTT 58.186 50.000 13.03 0.00 0.00 2.85
746 747 2.972625 CAACGGTTGGAGATGCTCTTA 58.027 47.619 13.03 0.00 0.00 2.10
747 748 2.673368 CAACGGTTGGAGATGCTCTTAC 59.327 50.000 13.03 0.00 0.00 2.34
748 749 2.180276 ACGGTTGGAGATGCTCTTACT 58.820 47.619 0.00 0.00 0.00 2.24
749 750 3.362706 ACGGTTGGAGATGCTCTTACTA 58.637 45.455 0.00 0.00 0.00 1.82
750 751 3.767673 ACGGTTGGAGATGCTCTTACTAA 59.232 43.478 0.00 0.00 0.00 2.24
751 752 4.406003 ACGGTTGGAGATGCTCTTACTAAT 59.594 41.667 0.00 0.00 0.00 1.73
806 807 3.516615 AGCAGACTTCTTCAATACTCGC 58.483 45.455 0.00 0.00 0.00 5.03
807 808 3.056536 AGCAGACTTCTTCAATACTCGCA 60.057 43.478 0.00 0.00 0.00 5.10
808 809 3.061429 GCAGACTTCTTCAATACTCGCAC 59.939 47.826 0.00 0.00 0.00 5.34
809 810 3.301906 CAGACTTCTTCAATACTCGCACG 59.698 47.826 0.00 0.00 0.00 5.34
810 811 3.190744 AGACTTCTTCAATACTCGCACGA 59.809 43.478 0.00 0.00 0.00 4.35
811 812 3.243336 ACTTCTTCAATACTCGCACGAC 58.757 45.455 0.00 0.00 0.00 4.34
812 813 2.273370 TCTTCAATACTCGCACGACC 57.727 50.000 0.00 0.00 0.00 4.79
813 814 1.135199 TCTTCAATACTCGCACGACCC 60.135 52.381 0.00 0.00 0.00 4.46
814 815 0.457166 TTCAATACTCGCACGACCCG 60.457 55.000 0.00 0.00 0.00 5.28
815 816 1.138036 CAATACTCGCACGACCCGA 59.862 57.895 0.00 0.00 0.00 5.14
816 817 1.138047 CAATACTCGCACGACCCGAC 61.138 60.000 0.00 0.00 0.00 4.79
817 818 2.588146 AATACTCGCACGACCCGACG 62.588 60.000 0.00 0.00 39.31 5.12
838 839 4.003788 CTCCCCTGACGTGCCGTT 62.004 66.667 0.00 0.00 41.37 4.44
839 840 4.308458 TCCCCTGACGTGCCGTTG 62.308 66.667 0.00 0.00 41.37 4.10
840 841 4.308458 CCCCTGACGTGCCGTTGA 62.308 66.667 0.00 0.00 41.37 3.18
841 842 3.041940 CCCTGACGTGCCGTTGAC 61.042 66.667 0.00 0.00 41.37 3.18
842 843 2.279851 CCTGACGTGCCGTTGACA 60.280 61.111 0.00 0.00 41.37 3.58
1044 1072 1.554836 CTGAGGAGCTGGTTGAGAGA 58.445 55.000 0.00 0.00 0.00 3.10
1056 1084 2.020720 GTTGAGAGAGAGATGAGCGGA 58.979 52.381 0.00 0.00 0.00 5.54
1172 1200 1.553248 CCTCATCGTAACAACCCCTCA 59.447 52.381 0.00 0.00 0.00 3.86
1177 1205 0.974383 CGTAACAACCCCTCACCTCT 59.026 55.000 0.00 0.00 0.00 3.69
1180 1208 0.771755 AACAACCCCTCACCTCTTCC 59.228 55.000 0.00 0.00 0.00 3.46
1189 1217 2.534990 CTCACCTCTTCCTCTGTCCTT 58.465 52.381 0.00 0.00 0.00 3.36
1206 1234 1.433534 CTTCGCCAGTTCTTCCACTC 58.566 55.000 0.00 0.00 0.00 3.51
1209 1237 1.009389 CGCCAGTTCTTCCACTCGAC 61.009 60.000 0.00 0.00 0.00 4.20
1213 1241 0.318784 AGTTCTTCCACTCGACGTGC 60.319 55.000 0.00 0.00 42.42 5.34
1225 1253 0.697010 CGACGTGCGAAATTTTGCTG 59.303 50.000 26.73 21.35 44.57 4.41
1235 1263 6.197096 GTGCGAAATTTTGCTGATCGATATTT 59.803 34.615 26.73 0.00 38.42 1.40
1245 1273 9.698309 TTTGCTGATCGATATTTTTGGTTTAAA 57.302 25.926 0.00 0.00 0.00 1.52
1246 1274 9.698309 TTGCTGATCGATATTTTTGGTTTAAAA 57.302 25.926 0.00 0.00 36.51 1.52
1247 1275 9.868277 TGCTGATCGATATTTTTGGTTTAAAAT 57.132 25.926 0.00 0.00 40.04 1.82
1251 1279 6.983910 TCGATATTTTTGGTTTAAAATGCGC 58.016 32.000 0.00 0.00 38.01 6.09
1253 1281 3.861569 TTTTTGGTTTAAAATGCGCGG 57.138 38.095 8.83 0.00 38.03 6.46
1354 1382 3.932710 TGATTGTGTCTACGGATTTGCTC 59.067 43.478 0.00 0.00 0.00 4.26
1364 1392 0.583917 GGATTTGCTCGAGCCGATTC 59.416 55.000 33.23 23.78 41.18 2.52
1383 1411 3.788434 TCGCTCTCGATTTGAACAAAC 57.212 42.857 2.03 0.00 40.21 2.93
1384 1412 3.390135 TCGCTCTCGATTTGAACAAACT 58.610 40.909 2.03 0.00 40.21 2.66
1385 1413 3.184379 TCGCTCTCGATTTGAACAAACTG 59.816 43.478 2.03 0.00 40.21 3.16
1386 1414 3.184379 CGCTCTCGATTTGAACAAACTGA 59.816 43.478 2.03 3.34 38.10 3.41
1422 1452 3.746045 TTCTTGCTACCTCTGTTCGTT 57.254 42.857 0.00 0.00 0.00 3.85
1458 1488 5.741011 AGTACACCAAGTGAGAAAACTTCA 58.259 37.500 0.96 0.00 38.34 3.02
1479 1509 4.752604 TCACGTTGCTTTGCTAAATGTCTA 59.247 37.500 0.00 0.00 0.00 2.59
1503 1533 3.773860 TCGATCTTGAAGAGTGAGAGC 57.226 47.619 0.00 0.00 0.00 4.09
1751 1786 5.789574 TTATTACAGGGATGGGTGAGTTT 57.210 39.130 0.00 0.00 0.00 2.66
1819 1856 7.781056 TGAAAAAGAAGCAACTTCCTGTAATT 58.219 30.769 3.77 0.00 40.98 1.40
1877 1915 2.427095 ACTTGGAGCACTTTGGTCAAAC 59.573 45.455 7.60 0.00 45.96 2.93
1925 1963 8.439286 TCAAATAAAAATTTAAACGGCTGCATC 58.561 29.630 0.50 0.00 0.00 3.91
2003 2072 6.465084 TCCAGATTATCTCTTCATGCATCAG 58.535 40.000 0.00 0.00 29.16 2.90
2079 2149 9.826574 TTACTGTTGTTATCTGTTACTTGAACT 57.173 29.630 0.00 0.00 38.98 3.01
2090 2160 7.103641 TCTGTTACTTGAACTGAATACCCATC 58.896 38.462 0.00 0.00 41.49 3.51
2125 2195 7.807977 AGTGTGTTGAGATTTCTTGTAACAT 57.192 32.000 0.00 0.00 31.98 2.71
2138 2208 6.330004 TCTTGTAACATCATTGCACAATGT 57.670 33.333 19.81 7.65 46.15 2.71
2139 2209 7.446001 TCTTGTAACATCATTGCACAATGTA 57.554 32.000 19.81 9.65 46.15 2.29
2142 2212 6.035217 TGTAACATCATTGCACAATGTATGC 58.965 36.000 19.81 10.55 46.15 3.14
2155 2225 7.134815 GCACAATGTATGCCTAATTCTTACAG 58.865 38.462 0.00 0.00 37.08 2.74
2163 2233 9.765795 GTATGCCTAATTCTTACAGAGTTACAT 57.234 33.333 0.00 0.00 0.00 2.29
2174 2244 3.436704 ACAGAGTTACATCCGCAATGTTG 59.563 43.478 7.00 2.61 46.73 3.33
2204 2274 7.307573 GCAGGATTCAAAAATGAGGTTTCAAAG 60.308 37.037 0.00 0.00 36.78 2.77
2389 2460 7.051000 GGAGCTCTGGTTATAACATTCTTTCT 58.949 38.462 17.16 5.15 0.00 2.52
2406 2477 1.040646 TCTTGCACGTCCAGTCTTCT 58.959 50.000 0.00 0.00 0.00 2.85
2550 2621 7.201644 GCAATGCACACAAATAGTATGTCTAGT 60.202 37.037 0.00 0.00 31.67 2.57
2571 2642 2.052690 TCTAGCTCCCTGGCACGTC 61.053 63.158 0.00 0.00 34.17 4.34
2644 2715 2.035961 TGTGGTATGCCGCTAGAATCTC 59.964 50.000 14.80 0.00 45.25 2.75
2791 2862 6.732531 TGAGAAATGCTTACACATTCTCAG 57.267 37.500 16.20 0.00 46.59 3.35
2792 2863 5.122869 TGAGAAATGCTTACACATTCTCAGC 59.877 40.000 16.20 0.00 46.59 4.26
2892 2966 9.548631 TGTTTATTATTTGTCCCCAAAAGGATA 57.451 29.630 0.00 0.00 43.43 2.59
2944 3019 5.593095 GTCCCCTAATCTTCCCAATTAACAC 59.407 44.000 0.00 0.00 0.00 3.32
3017 3092 4.631131 TGCATGATCCTAATGTACTTCCG 58.369 43.478 0.00 0.00 0.00 4.30
3148 3226 4.708177 GTCAGGGCTGAGCTATGAAATAA 58.292 43.478 12.38 0.00 40.75 1.40
3150 3228 6.467677 GTCAGGGCTGAGCTATGAAATAATA 58.532 40.000 12.38 0.00 40.75 0.98
3172 3252 5.607119 AGTCCTTTATTTTGTGCTGTACG 57.393 39.130 0.00 0.00 0.00 3.67
3173 3253 4.083484 AGTCCTTTATTTTGTGCTGTACGC 60.083 41.667 3.22 3.22 39.77 4.42
3200 3280 7.060421 TGTCTTGTCTAAACCCAGAAAGAAAT 58.940 34.615 0.00 0.00 30.56 2.17
3201 3281 7.228706 TGTCTTGTCTAAACCCAGAAAGAAATC 59.771 37.037 0.00 0.00 30.56 2.17
3206 3286 7.505585 TGTCTAAACCCAGAAAGAAATCATTGT 59.494 33.333 0.00 0.00 0.00 2.71
3217 3297 5.456192 AGAAATCATTGTCGCTTTAGACG 57.544 39.130 0.00 0.00 43.70 4.18
3226 3306 2.534757 GTCGCTTTAGACGTATTGAGCC 59.465 50.000 10.58 0.00 0.00 4.70
3235 3315 7.493743 TTAGACGTATTGAGCCTAGTAAGAG 57.506 40.000 0.00 0.00 0.00 2.85
3268 3348 8.107095 AGTTATGTTAAGGTCTAATTGGCTTCA 58.893 33.333 0.00 0.00 0.00 3.02
3281 3361 2.985896 TGGCTTCAGTTACACATAGCC 58.014 47.619 0.00 0.00 46.43 3.93
3292 3372 0.463295 CACATAGCCTGCAGGTGAGG 60.463 60.000 32.81 23.66 37.57 3.86
3426 3507 7.174946 CCAAGGTCAGTCATTTAATGTACAACT 59.825 37.037 0.00 0.00 0.00 3.16
3604 3686 8.158169 ACATATATTTTGACATGCAGGTAGTG 57.842 34.615 2.88 0.00 0.00 2.74
3647 3729 9.880157 GTTATAAGTACCTTGTATGGTTCTCAA 57.120 33.333 0.00 0.00 41.22 3.02
3656 3738 9.174166 ACCTTGTATGGTTCTCAATATAAACAC 57.826 33.333 0.00 0.00 36.89 3.32
3657 3739 9.173021 CCTTGTATGGTTCTCAATATAAACACA 57.827 33.333 0.00 0.00 0.00 3.72
3661 3743 5.933790 TGGTTCTCAATATAAACACAACGC 58.066 37.500 0.00 0.00 0.00 4.84
3684 3766 6.115446 GCATATGCTGTAGCCTTCCATTATA 58.885 40.000 20.64 0.00 41.18 0.98
3690 3772 7.917003 TGCTGTAGCCTTCCATTATATATTCA 58.083 34.615 0.80 0.00 41.18 2.57
3691 3773 7.824289 TGCTGTAGCCTTCCATTATATATTCAC 59.176 37.037 0.80 0.00 41.18 3.18
3738 3821 1.071434 AGGCTGGGAAAAAGAGAGCT 58.929 50.000 0.00 0.00 0.00 4.09
3753 3836 2.880890 GAGAGCTGAGAAAAGGCACAAA 59.119 45.455 0.00 0.00 0.00 2.83
3800 3883 3.173151 TCTATGAAGAGTGGAGTGGCAA 58.827 45.455 0.00 0.00 0.00 4.52
3827 3910 0.544697 AGTTGACCAACCAGACCGTT 59.455 50.000 9.07 0.00 42.06 4.44
3841 3924 4.431131 CGTTGGCTGGGAGGGCAT 62.431 66.667 0.00 0.00 41.29 4.40
3878 3961 2.014128 ACCAACTTTCACCAACTCACG 58.986 47.619 0.00 0.00 0.00 4.35
3960 4043 0.690762 TCCCCAAAACGCTAGAGCTT 59.309 50.000 0.00 0.00 39.32 3.74
3971 4056 6.595772 AACGCTAGAGCTTTGAATAATGAG 57.404 37.500 0.00 0.00 39.32 2.90
4001 4086 9.875708 ATGACAAGACTCTTTACTAGATATCCT 57.124 33.333 0.00 0.00 30.92 3.24
4002 4087 9.126151 TGACAAGACTCTTTACTAGATATCCTG 57.874 37.037 0.00 0.00 30.92 3.86
4003 4088 9.127277 GACAAGACTCTTTACTAGATATCCTGT 57.873 37.037 0.00 1.37 30.73 4.00
4004 4089 9.482175 ACAAGACTCTTTACTAGATATCCTGTT 57.518 33.333 0.00 0.00 30.92 3.16
4015 4100 2.642171 TATCCTGTTGAGTCCCTGGT 57.358 50.000 0.00 0.00 0.00 4.00
4018 4103 0.890996 CCTGTTGAGTCCCTGGTTGC 60.891 60.000 0.00 0.00 0.00 4.17
4022 4107 2.743928 GAGTCCCTGGTTGCTGCG 60.744 66.667 0.00 0.00 0.00 5.18
4027 4112 1.078497 CCCTGGTTGCTGCGTATGA 60.078 57.895 0.00 0.00 0.00 2.15
4095 4185 5.468592 AGCAGTTCTATATGATTGAGAGCG 58.531 41.667 0.00 0.00 0.00 5.03
4427 4585 1.267574 ATCACCGGAGAGCACACCAT 61.268 55.000 9.46 0.00 0.00 3.55
4492 4669 3.426568 GCCAGCGTCACCTTGAGC 61.427 66.667 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.365265 AGCCGCGCTTTTCCCTTG 61.365 61.111 5.56 0.00 33.89 3.61
2 3 3.365265 CAGCCGCGCTTTTCCCTT 61.365 61.111 5.56 0.00 36.40 3.95
20 21 3.825160 TTCACCTGACTGCGTGGGC 62.825 63.158 0.00 0.00 40.52 5.36
21 22 0.817634 TTTTCACCTGACTGCGTGGG 60.818 55.000 0.00 0.00 0.00 4.61
22 23 1.021202 TTTTTCACCTGACTGCGTGG 58.979 50.000 0.00 0.00 0.00 4.94
23 24 2.290367 TGATTTTTCACCTGACTGCGTG 59.710 45.455 0.00 0.00 0.00 5.34
24 25 2.571212 TGATTTTTCACCTGACTGCGT 58.429 42.857 0.00 0.00 0.00 5.24
25 26 3.250762 TCTTGATTTTTCACCTGACTGCG 59.749 43.478 0.00 0.00 0.00 5.18
26 27 4.836125 TCTTGATTTTTCACCTGACTGC 57.164 40.909 0.00 0.00 0.00 4.40
27 28 8.652810 AAAAATCTTGATTTTTCACCTGACTG 57.347 30.769 21.41 0.00 38.85 3.51
49 50 2.032987 GGCGAGTCGGGGGAAAAA 59.967 61.111 15.52 0.00 0.00 1.94
50 51 2.926242 AGGCGAGTCGGGGGAAAA 60.926 61.111 15.52 0.00 0.00 2.29
51 52 3.387947 GAGGCGAGTCGGGGGAAA 61.388 66.667 15.52 0.00 0.00 3.13
83 84 1.241990 TATAGCTAGTGGCCGCCGAG 61.242 60.000 14.07 12.14 43.05 4.63
84 85 0.611062 ATATAGCTAGTGGCCGCCGA 60.611 55.000 14.07 0.00 43.05 5.54
85 86 0.179134 GATATAGCTAGTGGCCGCCG 60.179 60.000 14.07 5.68 43.05 6.46
86 87 0.175989 GGATATAGCTAGTGGCCGCC 59.824 60.000 14.07 1.04 43.05 6.13
87 88 0.175989 GGGATATAGCTAGTGGCCGC 59.824 60.000 8.71 8.71 43.05 6.53
88 89 0.456221 CGGGATATAGCTAGTGGCCG 59.544 60.000 0.00 0.00 43.05 6.13
89 90 0.175989 GCGGGATATAGCTAGTGGCC 59.824 60.000 0.00 0.00 43.05 5.36
90 91 0.179134 CGCGGGATATAGCTAGTGGC 60.179 60.000 0.00 0.00 42.19 5.01
91 92 0.179134 GCGCGGGATATAGCTAGTGG 60.179 60.000 8.83 0.00 0.00 4.00
92 93 0.179134 GGCGCGGGATATAGCTAGTG 60.179 60.000 8.83 0.00 0.00 2.74
93 94 0.611062 TGGCGCGGGATATAGCTAGT 60.611 55.000 8.83 0.00 0.00 2.57
94 95 0.179134 GTGGCGCGGGATATAGCTAG 60.179 60.000 8.83 0.00 0.00 3.42
95 96 1.601419 GGTGGCGCGGGATATAGCTA 61.601 60.000 8.83 0.00 0.00 3.32
96 97 2.657237 GTGGCGCGGGATATAGCT 59.343 61.111 8.83 0.00 0.00 3.32
97 98 2.434359 GGTGGCGCGGGATATAGC 60.434 66.667 8.83 0.00 0.00 2.97
98 99 2.264794 GGGTGGCGCGGGATATAG 59.735 66.667 8.83 0.00 0.00 1.31
99 100 3.687102 CGGGTGGCGCGGGATATA 61.687 66.667 8.83 0.00 36.19 0.86
117 118 1.461091 TATCTAGCGGTGAAGGGCGG 61.461 60.000 0.00 0.00 0.00 6.13
118 119 0.039074 CTATCTAGCGGTGAAGGGCG 60.039 60.000 0.00 0.00 0.00 6.13
119 120 0.319986 GCTATCTAGCGGTGAAGGGC 60.320 60.000 0.00 0.00 39.82 5.19
120 121 3.896317 GCTATCTAGCGGTGAAGGG 57.104 57.895 0.00 0.00 39.82 3.95
130 131 0.250513 GGCGGGGAATGGCTATCTAG 59.749 60.000 0.00 0.00 0.00 2.43
131 132 1.541310 CGGCGGGGAATGGCTATCTA 61.541 60.000 0.00 0.00 0.00 1.98
132 133 2.883828 CGGCGGGGAATGGCTATCT 61.884 63.158 0.00 0.00 0.00 1.98
133 134 2.358737 CGGCGGGGAATGGCTATC 60.359 66.667 0.00 0.00 0.00 2.08
134 135 1.990160 TTTCGGCGGGGAATGGCTAT 61.990 55.000 7.21 0.00 0.00 2.97
135 136 2.199613 TTTTCGGCGGGGAATGGCTA 62.200 55.000 7.21 0.00 0.00 3.93
136 137 3.577334 TTTTCGGCGGGGAATGGCT 62.577 57.895 7.21 0.00 0.00 4.75
137 138 2.641277 TTTTTCGGCGGGGAATGGC 61.641 57.895 7.21 0.00 0.00 4.40
138 139 3.688086 TTTTTCGGCGGGGAATGG 58.312 55.556 7.21 0.00 0.00 3.16
152 153 1.737793 CGGCGAACCTCTGCTATTTTT 59.262 47.619 0.00 0.00 0.00 1.94
153 154 1.369625 CGGCGAACCTCTGCTATTTT 58.630 50.000 0.00 0.00 0.00 1.82
154 155 1.090052 GCGGCGAACCTCTGCTATTT 61.090 55.000 12.98 0.00 33.24 1.40
155 156 1.521681 GCGGCGAACCTCTGCTATT 60.522 57.895 12.98 0.00 33.24 1.73
156 157 2.107141 GCGGCGAACCTCTGCTAT 59.893 61.111 12.98 0.00 33.24 2.97
157 158 3.356639 CTGCGGCGAACCTCTGCTA 62.357 63.158 12.98 0.00 36.79 3.49
158 159 4.749310 CTGCGGCGAACCTCTGCT 62.749 66.667 12.98 0.00 36.79 4.24
161 162 4.749310 CTGCTGCGGCGAACCTCT 62.749 66.667 12.98 0.00 42.25 3.69
172 173 4.082523 TGTCGTAGGGCCTGCTGC 62.083 66.667 18.53 10.71 40.16 5.25
173 174 2.185350 CTGTCGTAGGGCCTGCTG 59.815 66.667 18.53 11.60 0.00 4.41
174 175 3.775654 GCTGTCGTAGGGCCTGCT 61.776 66.667 18.53 0.00 0.00 4.24
175 176 4.082523 TGCTGTCGTAGGGCCTGC 62.083 66.667 18.53 15.17 0.00 4.85
176 177 2.172483 AACTGCTGTCGTAGGGCCTG 62.172 60.000 18.53 0.00 0.00 4.85
177 178 1.913762 AACTGCTGTCGTAGGGCCT 60.914 57.895 12.58 12.58 0.00 5.19
178 179 1.741770 CAACTGCTGTCGTAGGGCC 60.742 63.158 0.00 0.00 0.00 5.80
179 180 1.741770 CCAACTGCTGTCGTAGGGC 60.742 63.158 0.00 0.00 0.00 5.19
180 181 1.079127 CCCAACTGCTGTCGTAGGG 60.079 63.158 0.00 3.16 0.00 3.53
181 182 1.741770 GCCCAACTGCTGTCGTAGG 60.742 63.158 0.00 0.00 0.00 3.18
182 183 2.094659 CGCCCAACTGCTGTCGTAG 61.095 63.158 0.00 0.00 0.00 3.51
183 184 2.048597 CGCCCAACTGCTGTCGTA 60.049 61.111 0.00 0.00 0.00 3.43
184 185 3.750373 AACGCCCAACTGCTGTCGT 62.750 57.895 0.00 0.00 34.91 4.34
185 186 2.443957 GAAACGCCCAACTGCTGTCG 62.444 60.000 0.00 0.00 0.00 4.35
186 187 1.282875 GAAACGCCCAACTGCTGTC 59.717 57.895 0.00 0.00 0.00 3.51
187 188 2.193536 GGAAACGCCCAACTGCTGT 61.194 57.895 0.00 0.00 0.00 4.40
188 189 2.644992 GGAAACGCCCAACTGCTG 59.355 61.111 0.00 0.00 0.00 4.41
208 209 1.078426 CTAAACTGCCCCTCCACGG 60.078 63.158 0.00 0.00 0.00 4.94
209 210 1.745489 GCTAAACTGCCCCTCCACG 60.745 63.158 0.00 0.00 0.00 4.94
210 211 1.745489 CGCTAAACTGCCCCTCCAC 60.745 63.158 0.00 0.00 0.00 4.02
211 212 2.668632 CGCTAAACTGCCCCTCCA 59.331 61.111 0.00 0.00 0.00 3.86
212 213 2.124695 CCGCTAAACTGCCCCTCC 60.125 66.667 0.00 0.00 0.00 4.30
213 214 2.824489 GCCGCTAAACTGCCCCTC 60.824 66.667 0.00 0.00 0.00 4.30
214 215 4.778143 CGCCGCTAAACTGCCCCT 62.778 66.667 0.00 0.00 0.00 4.79
218 219 3.799755 CACCCGCCGCTAAACTGC 61.800 66.667 0.00 0.00 0.00 4.40
219 220 3.799755 GCACCCGCCGCTAAACTG 61.800 66.667 0.00 0.00 0.00 3.16
220 221 4.323477 TGCACCCGCCGCTAAACT 62.323 61.111 0.00 0.00 37.32 2.66
221 222 4.097863 GTGCACCCGCCGCTAAAC 62.098 66.667 5.22 0.00 37.32 2.01
241 242 4.735132 ACACGTGTCGCCCGATGG 62.735 66.667 17.22 0.00 0.00 3.51
242 243 3.478394 CACACGTGTCGCCCGATG 61.478 66.667 20.49 0.50 0.00 3.84
243 244 3.001902 ATCACACGTGTCGCCCGAT 62.002 57.895 20.49 15.12 0.00 4.18
244 245 3.676605 ATCACACGTGTCGCCCGA 61.677 61.111 20.49 13.31 0.00 5.14
245 246 3.478394 CATCACACGTGTCGCCCG 61.478 66.667 20.49 7.49 0.00 6.13
246 247 1.225376 TTTCATCACACGTGTCGCCC 61.225 55.000 20.49 0.00 0.00 6.13
247 248 0.796312 ATTTCATCACACGTGTCGCC 59.204 50.000 20.49 0.00 0.00 5.54
248 249 3.305897 TCATATTTCATCACACGTGTCGC 59.694 43.478 20.49 0.00 0.00 5.19
249 250 4.562789 ACTCATATTTCATCACACGTGTCG 59.437 41.667 20.49 14.53 0.00 4.35
250 251 6.408858 AACTCATATTTCATCACACGTGTC 57.591 37.500 20.49 0.00 0.00 3.67
251 252 6.801539 AAACTCATATTTCATCACACGTGT 57.198 33.333 17.22 17.22 0.00 4.49
252 253 9.773328 ATAAAAACTCATATTTCATCACACGTG 57.227 29.630 15.48 15.48 0.00 4.49
309 310 9.915629 ACTTCAACAAAATAGTACAACAACAAA 57.084 25.926 0.00 0.00 0.00 2.83
376 377 8.405531 GCTAGGCTGTTCAATTATCAACATAAA 58.594 33.333 0.00 0.00 32.13 1.40
377 378 7.013274 GGCTAGGCTGTTCAATTATCAACATAA 59.987 37.037 9.46 0.00 32.13 1.90
378 379 6.486657 GGCTAGGCTGTTCAATTATCAACATA 59.513 38.462 9.46 0.00 32.13 2.29
379 380 5.300286 GGCTAGGCTGTTCAATTATCAACAT 59.700 40.000 9.46 0.00 32.13 2.71
380 381 4.640201 GGCTAGGCTGTTCAATTATCAACA 59.360 41.667 9.46 0.00 0.00 3.33
381 382 4.640201 TGGCTAGGCTGTTCAATTATCAAC 59.360 41.667 18.18 0.00 0.00 3.18
382 383 4.640201 GTGGCTAGGCTGTTCAATTATCAA 59.360 41.667 18.18 0.00 0.00 2.57
383 384 4.199310 GTGGCTAGGCTGTTCAATTATCA 58.801 43.478 18.18 0.00 0.00 2.15
384 385 3.248602 CGTGGCTAGGCTGTTCAATTATC 59.751 47.826 18.18 0.00 0.00 1.75
385 386 3.206150 CGTGGCTAGGCTGTTCAATTAT 58.794 45.455 18.18 0.00 0.00 1.28
386 387 2.627945 CGTGGCTAGGCTGTTCAATTA 58.372 47.619 18.18 0.00 0.00 1.40
387 388 1.453155 CGTGGCTAGGCTGTTCAATT 58.547 50.000 18.18 0.00 0.00 2.32
388 389 0.392998 CCGTGGCTAGGCTGTTCAAT 60.393 55.000 18.18 0.00 0.00 2.57
389 390 1.003839 CCGTGGCTAGGCTGTTCAA 60.004 57.895 18.18 0.00 0.00 2.69
390 391 2.662596 CCGTGGCTAGGCTGTTCA 59.337 61.111 18.18 0.00 0.00 3.18
397 398 4.077184 TGGTTCGCCGTGGCTAGG 62.077 66.667 9.55 0.00 41.18 3.02
398 399 2.813908 GTGGTTCGCCGTGGCTAG 60.814 66.667 9.55 0.00 41.18 3.42
399 400 4.728102 CGTGGTTCGCCGTGGCTA 62.728 66.667 9.55 0.00 41.18 3.93
408 409 0.852777 CTCATATTCGGCGTGGTTCG 59.147 55.000 6.85 0.00 43.12 3.95
409 410 0.582005 GCTCATATTCGGCGTGGTTC 59.418 55.000 6.85 0.00 0.00 3.62
410 411 0.814010 GGCTCATATTCGGCGTGGTT 60.814 55.000 6.85 0.00 0.00 3.67
411 412 1.227556 GGCTCATATTCGGCGTGGT 60.228 57.895 6.85 0.00 0.00 4.16
412 413 0.317160 TAGGCTCATATTCGGCGTGG 59.683 55.000 6.85 0.00 0.00 4.94
413 414 2.370281 ATAGGCTCATATTCGGCGTG 57.630 50.000 6.85 0.00 0.00 5.34
414 415 2.563179 AGAATAGGCTCATATTCGGCGT 59.437 45.455 6.85 0.00 43.79 5.68
415 416 3.119316 AGAGAATAGGCTCATATTCGGCG 60.119 47.826 0.00 0.00 43.79 6.46
416 417 4.159506 AGAGAGAATAGGCTCATATTCGGC 59.840 45.833 8.15 5.74 43.79 5.54
417 418 5.417266 TGAGAGAGAATAGGCTCATATTCGG 59.583 44.000 8.15 0.00 43.79 4.30
418 419 6.507958 TGAGAGAGAATAGGCTCATATTCG 57.492 41.667 8.15 0.00 43.79 3.34
423 424 5.662208 CCCATATGAGAGAGAATAGGCTCAT 59.338 44.000 3.65 0.00 46.50 2.90
424 425 5.022122 CCCATATGAGAGAGAATAGGCTCA 58.978 45.833 3.65 0.00 41.14 4.26
425 426 4.141959 GCCCATATGAGAGAGAATAGGCTC 60.142 50.000 3.65 0.00 33.86 4.70
426 427 3.774216 GCCCATATGAGAGAGAATAGGCT 59.226 47.826 3.65 0.00 33.86 4.58
427 428 3.774216 AGCCCATATGAGAGAGAATAGGC 59.226 47.826 3.65 4.27 36.92 3.93
428 429 6.371595 AAAGCCCATATGAGAGAGAATAGG 57.628 41.667 3.65 0.00 0.00 2.57
429 430 9.598517 GAATAAAGCCCATATGAGAGAGAATAG 57.401 37.037 3.65 0.00 0.00 1.73
430 431 8.253810 CGAATAAAGCCCATATGAGAGAGAATA 58.746 37.037 3.65 0.00 0.00 1.75
431 432 7.102346 CGAATAAAGCCCATATGAGAGAGAAT 58.898 38.462 3.65 0.00 0.00 2.40
432 433 6.459066 CGAATAAAGCCCATATGAGAGAGAA 58.541 40.000 3.65 0.00 0.00 2.87
433 434 5.567623 GCGAATAAAGCCCATATGAGAGAGA 60.568 44.000 3.65 0.00 0.00 3.10
434 435 4.629200 GCGAATAAAGCCCATATGAGAGAG 59.371 45.833 3.65 0.00 0.00 3.20
435 436 4.569943 GCGAATAAAGCCCATATGAGAGA 58.430 43.478 3.65 0.00 0.00 3.10
436 437 4.935885 GCGAATAAAGCCCATATGAGAG 57.064 45.455 3.65 0.00 0.00 3.20
447 448 1.269051 CCCCATTTCGGCGAATAAAGC 60.269 52.381 24.33 0.00 0.00 3.51
448 449 1.269051 GCCCCATTTCGGCGAATAAAG 60.269 52.381 24.33 12.56 36.47 1.85
449 450 0.741915 GCCCCATTTCGGCGAATAAA 59.258 50.000 24.33 9.26 36.47 1.40
450 451 2.410466 GCCCCATTTCGGCGAATAA 58.590 52.632 24.33 10.09 36.47 1.40
451 452 4.150994 GCCCCATTTCGGCGAATA 57.849 55.556 24.33 14.37 36.47 1.75
457 458 1.134729 CATTTTCCAGCCCCATTTCGG 60.135 52.381 0.00 0.00 0.00 4.30
458 459 1.134729 CCATTTTCCAGCCCCATTTCG 60.135 52.381 0.00 0.00 0.00 3.46
459 460 1.210234 CCCATTTTCCAGCCCCATTTC 59.790 52.381 0.00 0.00 0.00 2.17
460 461 1.288188 CCCATTTTCCAGCCCCATTT 58.712 50.000 0.00 0.00 0.00 2.32
461 462 1.273986 GCCCATTTTCCAGCCCCATT 61.274 55.000 0.00 0.00 0.00 3.16
462 463 1.690283 GCCCATTTTCCAGCCCCAT 60.690 57.895 0.00 0.00 0.00 4.00
463 464 2.284552 GCCCATTTTCCAGCCCCA 60.285 61.111 0.00 0.00 0.00 4.96
464 465 3.083349 GGCCCATTTTCCAGCCCC 61.083 66.667 0.00 0.00 39.60 5.80
465 466 1.917787 TTGGCCCATTTTCCAGCCC 60.918 57.895 0.00 0.00 45.14 5.19
466 467 1.296392 GTTGGCCCATTTTCCAGCC 59.704 57.895 0.00 0.00 45.96 4.85
467 468 0.614812 ATGTTGGCCCATTTTCCAGC 59.385 50.000 0.00 0.00 33.32 4.85
468 469 1.135024 CGATGTTGGCCCATTTTCCAG 60.135 52.381 0.00 0.00 33.32 3.86
469 470 0.894141 CGATGTTGGCCCATTTTCCA 59.106 50.000 0.00 0.00 0.00 3.53
470 471 1.135112 GTCGATGTTGGCCCATTTTCC 60.135 52.381 0.00 0.00 0.00 3.13
471 472 1.467374 CGTCGATGTTGGCCCATTTTC 60.467 52.381 0.00 0.00 0.00 2.29
472 473 0.525761 CGTCGATGTTGGCCCATTTT 59.474 50.000 0.00 0.00 0.00 1.82
473 474 1.933115 GCGTCGATGTTGGCCCATTT 61.933 55.000 6.48 0.00 0.00 2.32
474 475 2.406616 GCGTCGATGTTGGCCCATT 61.407 57.895 6.48 0.00 0.00 3.16
475 476 2.824041 GCGTCGATGTTGGCCCAT 60.824 61.111 6.48 0.00 0.00 4.00
477 478 4.778143 AGGCGTCGATGTTGGCCC 62.778 66.667 6.48 0.00 46.75 5.80
478 479 3.499737 CAGGCGTCGATGTTGGCC 61.500 66.667 6.48 0.00 45.91 5.36
479 480 2.434185 TCAGGCGTCGATGTTGGC 60.434 61.111 6.48 1.04 0.00 4.52
480 481 1.811266 CCTCAGGCGTCGATGTTGG 60.811 63.158 6.48 0.00 0.00 3.77
481 482 1.078759 GTCCTCAGGCGTCGATGTTG 61.079 60.000 6.48 5.78 0.00 3.33
482 483 1.215647 GTCCTCAGGCGTCGATGTT 59.784 57.895 6.48 0.00 0.00 2.71
483 484 2.885861 GTCCTCAGGCGTCGATGT 59.114 61.111 6.48 0.00 0.00 3.06
484 485 2.278206 CGTCCTCAGGCGTCGATG 60.278 66.667 0.00 0.00 0.00 3.84
485 486 2.437895 TCGTCCTCAGGCGTCGAT 60.438 61.111 7.31 0.00 0.00 3.59
486 487 3.125573 CTCGTCCTCAGGCGTCGA 61.126 66.667 7.31 6.41 0.00 4.20
487 488 4.838486 GCTCGTCCTCAGGCGTCG 62.838 72.222 7.31 2.54 0.00 5.12
488 489 3.444805 AGCTCGTCCTCAGGCGTC 61.445 66.667 7.31 2.24 0.00 5.19
489 490 3.753434 CAGCTCGTCCTCAGGCGT 61.753 66.667 7.31 0.00 0.00 5.68
490 491 4.504916 CCAGCTCGTCCTCAGGCG 62.505 72.222 1.45 1.45 0.00 5.52
491 492 4.154347 CCCAGCTCGTCCTCAGGC 62.154 72.222 0.00 0.00 0.00 4.85
492 493 3.465403 CCCCAGCTCGTCCTCAGG 61.465 72.222 0.00 0.00 0.00 3.86
493 494 2.363018 TCCCCAGCTCGTCCTCAG 60.363 66.667 0.00 0.00 0.00 3.35
494 495 2.680352 GTCCCCAGCTCGTCCTCA 60.680 66.667 0.00 0.00 0.00 3.86
495 496 3.827898 CGTCCCCAGCTCGTCCTC 61.828 72.222 0.00 0.00 0.00 3.71
496 497 4.361971 TCGTCCCCAGCTCGTCCT 62.362 66.667 0.00 0.00 0.00 3.85
497 498 4.131088 GTCGTCCCCAGCTCGTCC 62.131 72.222 0.00 0.00 0.00 4.79
498 499 4.477975 CGTCGTCCCCAGCTCGTC 62.478 72.222 0.00 0.00 0.00 4.20
500 501 4.477975 GTCGTCGTCCCCAGCTCG 62.478 72.222 0.00 0.00 0.00 5.03
501 502 3.063084 AGTCGTCGTCCCCAGCTC 61.063 66.667 0.00 0.00 0.00 4.09
502 503 3.374402 CAGTCGTCGTCCCCAGCT 61.374 66.667 0.00 0.00 0.00 4.24
503 504 4.436998 CCAGTCGTCGTCCCCAGC 62.437 72.222 0.00 0.00 0.00 4.85
504 505 3.760035 CCCAGTCGTCGTCCCCAG 61.760 72.222 0.00 0.00 0.00 4.45
507 508 4.736896 GTGCCCAGTCGTCGTCCC 62.737 72.222 0.00 0.00 0.00 4.46
508 509 2.981977 TTTGTGCCCAGTCGTCGTCC 62.982 60.000 0.00 0.00 0.00 4.79
509 510 1.155424 TTTTGTGCCCAGTCGTCGTC 61.155 55.000 0.00 0.00 0.00 4.20
510 511 1.153329 TTTTGTGCCCAGTCGTCGT 60.153 52.632 0.00 0.00 0.00 4.34
511 512 1.278637 GTTTTGTGCCCAGTCGTCG 59.721 57.895 0.00 0.00 0.00 5.12
512 513 1.652563 GGTTTTGTGCCCAGTCGTC 59.347 57.895 0.00 0.00 0.00 4.20
513 514 2.184167 CGGTTTTGTGCCCAGTCGT 61.184 57.895 0.00 0.00 0.00 4.34
514 515 2.637025 CGGTTTTGTGCCCAGTCG 59.363 61.111 0.00 0.00 0.00 4.18
515 516 2.335011 GCGGTTTTGTGCCCAGTC 59.665 61.111 0.00 0.00 0.00 3.51
516 517 3.223589 GGCGGTTTTGTGCCCAGT 61.224 61.111 0.00 0.00 45.73 4.00
521 522 2.279851 GTTGGGGCGGTTTTGTGC 60.280 61.111 0.00 0.00 0.00 4.57
522 523 2.026879 CGTTGGGGCGGTTTTGTG 59.973 61.111 0.00 0.00 0.00 3.33
523 524 3.906879 GCGTTGGGGCGGTTTTGT 61.907 61.111 0.00 0.00 0.00 2.83
524 525 4.656117 GGCGTTGGGGCGGTTTTG 62.656 66.667 0.00 0.00 0.00 2.44
531 532 1.381165 AATACATTCGGCGTTGGGGC 61.381 55.000 6.85 0.00 37.98 5.80
532 533 0.380378 CAATACATTCGGCGTTGGGG 59.620 55.000 6.85 0.00 0.00 4.96
533 534 0.248458 GCAATACATTCGGCGTTGGG 60.248 55.000 6.85 0.00 0.00 4.12
534 535 0.248458 GGCAATACATTCGGCGTTGG 60.248 55.000 6.85 0.00 0.00 3.77
535 536 0.588730 CGGCAATACATTCGGCGTTG 60.589 55.000 6.85 8.94 42.98 4.10
536 537 1.711060 CCGGCAATACATTCGGCGTT 61.711 55.000 6.85 0.00 46.10 4.84
537 538 2.177580 CCGGCAATACATTCGGCGT 61.178 57.895 6.85 0.00 46.10 5.68
538 539 2.631428 CCGGCAATACATTCGGCG 59.369 61.111 0.00 0.00 46.97 6.46
540 541 0.813610 TGAGCCGGCAATACATTCGG 60.814 55.000 31.54 0.00 44.70 4.30
541 542 0.304705 GTGAGCCGGCAATACATTCG 59.695 55.000 31.54 0.00 0.00 3.34
542 543 0.663153 GGTGAGCCGGCAATACATTC 59.337 55.000 31.54 16.18 0.00 2.67
543 544 0.751643 GGGTGAGCCGGCAATACATT 60.752 55.000 31.54 5.22 34.97 2.71
544 545 1.152963 GGGTGAGCCGGCAATACAT 60.153 57.895 31.54 6.18 34.97 2.29
545 546 2.252072 GAGGGTGAGCCGGCAATACA 62.252 60.000 31.54 19.42 34.97 2.29
546 547 1.523938 GAGGGTGAGCCGGCAATAC 60.524 63.158 31.54 22.75 34.97 1.89
547 548 1.558167 TTGAGGGTGAGCCGGCAATA 61.558 55.000 31.54 11.62 34.97 1.90
548 549 2.826777 CTTGAGGGTGAGCCGGCAAT 62.827 60.000 31.54 9.09 34.97 3.56
549 550 3.551496 CTTGAGGGTGAGCCGGCAA 62.551 63.158 31.54 14.36 34.97 4.52
550 551 4.020617 CTTGAGGGTGAGCCGGCA 62.021 66.667 31.54 5.56 34.97 5.69
551 552 4.785453 CCTTGAGGGTGAGCCGGC 62.785 72.222 21.89 21.89 34.97 6.13
561 562 4.082245 ACGCATAAAAATTGTCCCTTGAGG 60.082 41.667 0.00 0.00 0.00 3.86
562 563 5.059404 ACGCATAAAAATTGTCCCTTGAG 57.941 39.130 0.00 0.00 0.00 3.02
563 564 4.082463 GGACGCATAAAAATTGTCCCTTGA 60.082 41.667 0.00 0.00 42.57 3.02
564 565 4.173256 GGACGCATAAAAATTGTCCCTTG 58.827 43.478 0.00 0.00 42.57 3.61
565 566 4.450082 GGACGCATAAAAATTGTCCCTT 57.550 40.909 0.00 0.00 42.57 3.95
569 570 3.428862 CCCCAGGACGCATAAAAATTGTC 60.429 47.826 0.00 0.00 0.00 3.18
570 571 2.495669 CCCCAGGACGCATAAAAATTGT 59.504 45.455 0.00 0.00 0.00 2.71
571 572 2.757868 TCCCCAGGACGCATAAAAATTG 59.242 45.455 0.00 0.00 0.00 2.32
572 573 2.758423 GTCCCCAGGACGCATAAAAATT 59.242 45.455 0.00 0.00 43.14 1.82
573 574 2.375146 GTCCCCAGGACGCATAAAAAT 58.625 47.619 0.00 0.00 43.14 1.82
574 575 1.828979 GTCCCCAGGACGCATAAAAA 58.171 50.000 0.00 0.00 43.14 1.94
575 576 3.562397 GTCCCCAGGACGCATAAAA 57.438 52.632 0.00 0.00 43.14 1.52
586 587 3.775654 GAGGAGCCGTGTCCCCAG 61.776 72.222 0.00 0.00 37.31 4.45
587 588 4.316823 AGAGGAGCCGTGTCCCCA 62.317 66.667 0.00 0.00 37.31 4.96
588 589 3.775654 CAGAGGAGCCGTGTCCCC 61.776 72.222 0.00 0.00 37.31 4.81
589 590 4.459089 GCAGAGGAGCCGTGTCCC 62.459 72.222 0.00 0.00 37.31 4.46
590 591 4.459089 GGCAGAGGAGCCGTGTCC 62.459 72.222 0.00 0.00 46.12 4.02
598 599 1.787057 CCTAGCGTACGGCAGAGGAG 61.787 65.000 18.39 3.74 45.35 3.69
599 600 1.822613 CCTAGCGTACGGCAGAGGA 60.823 63.158 18.39 0.00 45.35 3.71
600 601 2.119655 ACCTAGCGTACGGCAGAGG 61.120 63.158 18.39 19.07 46.94 3.69
605 606 2.277756 CGTCACCTAGCGTACGGC 60.278 66.667 18.39 9.46 44.05 5.68
606 607 0.795735 CAACGTCACCTAGCGTACGG 60.796 60.000 18.39 2.24 40.70 4.02
607 608 0.795735 CCAACGTCACCTAGCGTACG 60.796 60.000 11.84 11.84 40.70 3.67
608 609 0.457337 CCCAACGTCACCTAGCGTAC 60.457 60.000 0.00 0.00 40.70 3.67
609 610 1.885157 CCCAACGTCACCTAGCGTA 59.115 57.895 0.00 0.00 40.70 4.42
610 611 2.654877 CCCAACGTCACCTAGCGT 59.345 61.111 0.00 0.00 43.64 5.07
611 612 2.813908 GCCCAACGTCACCTAGCG 60.814 66.667 0.00 0.00 0.00 4.26
612 613 2.436115 GGCCCAACGTCACCTAGC 60.436 66.667 0.00 0.00 0.00 3.42
613 614 1.375523 GTGGCCCAACGTCACCTAG 60.376 63.158 0.00 0.00 0.00 3.02
614 615 1.839747 AGTGGCCCAACGTCACCTA 60.840 57.895 0.00 0.00 32.29 3.08
615 616 3.168528 AGTGGCCCAACGTCACCT 61.169 61.111 0.00 0.00 32.29 4.00
616 617 2.978010 CAGTGGCCCAACGTCACC 60.978 66.667 0.00 0.00 32.29 4.02
617 618 2.110213 TCAGTGGCCCAACGTCAC 59.890 61.111 0.00 0.00 0.00 3.67
618 619 2.050836 ATGTCAGTGGCCCAACGTCA 62.051 55.000 0.00 0.00 0.00 4.35
619 620 1.302511 ATGTCAGTGGCCCAACGTC 60.303 57.895 0.00 0.00 0.00 4.34
620 621 1.600636 CATGTCAGTGGCCCAACGT 60.601 57.895 0.00 0.00 0.00 3.99
621 622 1.600636 ACATGTCAGTGGCCCAACG 60.601 57.895 0.00 0.00 0.00 4.10
622 623 1.959085 CACATGTCAGTGGCCCAAC 59.041 57.895 0.00 0.00 35.88 3.77
623 624 4.498346 CACATGTCAGTGGCCCAA 57.502 55.556 0.00 0.00 35.88 4.12
629 630 4.749323 ATGGCCCACATGTCAGTG 57.251 55.556 0.00 0.00 38.70 3.66
636 637 4.459199 GGGAAACATGGCCCACAT 57.541 55.556 13.79 0.00 44.07 3.21
640 641 1.984026 CCTGTGGGAAACATGGCCC 60.984 63.158 12.25 12.25 44.93 5.80
641 642 2.649129 GCCTGTGGGAAACATGGCC 61.649 63.158 0.00 0.00 42.55 5.36
642 643 2.649129 GGCCTGTGGGAAACATGGC 61.649 63.158 0.00 9.21 45.20 4.40
643 644 1.984026 GGGCCTGTGGGAAACATGG 60.984 63.158 0.84 0.00 38.39 3.66
644 645 1.228831 TGGGCCTGTGGGAAACATG 60.229 57.895 4.53 0.00 38.39 3.21
645 646 1.228862 GTGGGCCTGTGGGAAACAT 60.229 57.895 4.53 0.00 38.39 2.71
646 647 2.017668 ATGTGGGCCTGTGGGAAACA 62.018 55.000 4.53 0.00 37.22 2.83
647 648 1.228862 ATGTGGGCCTGTGGGAAAC 60.229 57.895 4.53 0.00 33.58 2.78
648 649 1.228831 CATGTGGGCCTGTGGGAAA 60.229 57.895 4.53 0.00 33.58 3.13
649 650 2.424842 GACATGTGGGCCTGTGGGAA 62.425 60.000 1.15 0.00 33.58 3.97
650 651 2.858476 ACATGTGGGCCTGTGGGA 60.858 61.111 4.53 0.00 33.58 4.37
651 652 2.361610 GACATGTGGGCCTGTGGG 60.362 66.667 1.15 0.00 0.00 4.61
652 653 1.676635 CTGACATGTGGGCCTGTGG 60.677 63.158 1.15 0.00 0.00 4.17
653 654 1.073722 ACTGACATGTGGGCCTGTG 59.926 57.895 1.15 3.31 0.00 3.66
654 655 1.073722 CACTGACATGTGGGCCTGT 59.926 57.895 1.15 0.00 34.56 4.00
655 656 3.991999 CACTGACATGTGGGCCTG 58.008 61.111 1.15 0.00 34.56 4.85
661 662 2.337583 CCGTTCTACCACTGACATGTG 58.662 52.381 1.15 0.00 37.66 3.21
662 663 1.337823 GCCGTTCTACCACTGACATGT 60.338 52.381 0.00 0.00 0.00 3.21
663 664 1.337728 TGCCGTTCTACCACTGACATG 60.338 52.381 0.00 0.00 0.00 3.21
664 665 0.973632 TGCCGTTCTACCACTGACAT 59.026 50.000 0.00 0.00 0.00 3.06
665 666 0.317160 CTGCCGTTCTACCACTGACA 59.683 55.000 0.00 0.00 0.00 3.58
666 667 0.389948 CCTGCCGTTCTACCACTGAC 60.390 60.000 0.00 0.00 0.00 3.51
667 668 1.972198 CCTGCCGTTCTACCACTGA 59.028 57.895 0.00 0.00 0.00 3.41
668 669 1.741770 GCCTGCCGTTCTACCACTG 60.742 63.158 0.00 0.00 0.00 3.66
669 670 1.913762 AGCCTGCCGTTCTACCACT 60.914 57.895 0.00 0.00 0.00 4.00
670 671 1.741770 CAGCCTGCCGTTCTACCAC 60.742 63.158 0.00 0.00 0.00 4.16
671 672 2.662596 CAGCCTGCCGTTCTACCA 59.337 61.111 0.00 0.00 0.00 3.25
672 673 2.820037 GCAGCCTGCCGTTCTACC 60.820 66.667 5.06 0.00 37.42 3.18
681 682 1.241315 TTTACCTTTCGGCAGCCTGC 61.241 55.000 8.55 8.55 44.08 4.85
682 683 0.804989 CTTTACCTTTCGGCAGCCTG 59.195 55.000 10.54 3.19 0.00 4.85
683 684 0.322546 CCTTTACCTTTCGGCAGCCT 60.323 55.000 10.54 0.00 0.00 4.58
684 685 0.322187 TCCTTTACCTTTCGGCAGCC 60.322 55.000 0.00 0.00 0.00 4.85
685 686 1.671328 GATCCTTTACCTTTCGGCAGC 59.329 52.381 0.00 0.00 0.00 5.25
686 687 2.092914 AGGATCCTTTACCTTTCGGCAG 60.093 50.000 9.02 0.00 31.95 4.85
687 688 1.913419 AGGATCCTTTACCTTTCGGCA 59.087 47.619 9.02 0.00 31.95 5.69
688 689 2.562635 GAGGATCCTTTACCTTTCGGC 58.437 52.381 17.42 0.00 36.57 5.54
689 690 2.822764 CGAGGATCCTTTACCTTTCGG 58.177 52.381 17.42 0.00 36.57 4.30
690 691 2.202566 GCGAGGATCCTTTACCTTTCG 58.797 52.381 17.42 13.29 36.57 3.46
691 692 2.202566 CGCGAGGATCCTTTACCTTTC 58.797 52.381 17.42 0.00 36.57 2.62
692 693 1.742750 GCGCGAGGATCCTTTACCTTT 60.743 52.381 17.42 0.00 36.57 3.11
693 694 0.179081 GCGCGAGGATCCTTTACCTT 60.179 55.000 17.42 0.00 36.57 3.50
694 695 1.442148 GCGCGAGGATCCTTTACCT 59.558 57.895 17.42 0.00 39.41 3.08
695 696 1.949631 CGCGCGAGGATCCTTTACC 60.950 63.158 28.94 1.38 0.00 2.85
696 697 2.586773 GCGCGCGAGGATCCTTTAC 61.587 63.158 37.18 6.98 0.00 2.01
697 698 2.279252 GCGCGCGAGGATCCTTTA 60.279 61.111 37.18 0.00 0.00 1.85
715 716 3.192103 AACCGTTGGCCTCCAGGAC 62.192 63.158 3.32 0.00 45.93 3.85
716 717 2.852075 AACCGTTGGCCTCCAGGA 60.852 61.111 3.32 0.00 37.39 3.86
717 718 2.672996 CAACCGTTGGCCTCCAGG 60.673 66.667 3.32 4.84 33.81 4.45
718 719 2.672996 CCAACCGTTGGCCTCCAG 60.673 66.667 17.33 0.00 45.17 3.86
749 750 9.194972 TCAGTCTGATCACTCTGATAGTAAATT 57.805 33.333 16.44 0.00 37.20 1.82
750 751 8.629158 GTCAGTCTGATCACTCTGATAGTAAAT 58.371 37.037 20.71 0.00 37.20 1.40
751 752 7.067615 GGTCAGTCTGATCACTCTGATAGTAAA 59.932 40.741 20.71 2.67 37.20 2.01
765 766 1.698506 ATCCTCCGGTCAGTCTGATC 58.301 55.000 5.68 4.14 0.00 2.92
831 832 3.022287 CCAGTGTGTCAACGGCAC 58.978 61.111 0.00 0.00 37.37 5.01
832 833 2.899838 GCCAGTGTGTCAACGGCA 60.900 61.111 0.00 0.00 38.65 5.69
833 834 2.260869 ATGCCAGTGTGTCAACGGC 61.261 57.895 0.00 0.00 39.00 5.68
834 835 1.165907 ACATGCCAGTGTGTCAACGG 61.166 55.000 0.00 0.00 0.00 4.44
835 836 0.041047 CACATGCCAGTGTGTCAACG 60.041 55.000 0.00 0.00 43.43 4.10
836 837 0.311790 CCACATGCCAGTGTGTCAAC 59.688 55.000 11.48 0.00 46.21 3.18
837 838 0.182299 TCCACATGCCAGTGTGTCAA 59.818 50.000 11.48 0.00 46.21 3.18
838 839 0.534877 GTCCACATGCCAGTGTGTCA 60.535 55.000 11.48 0.00 46.21 3.58
839 840 1.237285 GGTCCACATGCCAGTGTGTC 61.237 60.000 11.48 5.89 46.21 3.67
840 841 1.228245 GGTCCACATGCCAGTGTGT 60.228 57.895 11.48 0.00 46.21 3.72
841 842 1.973281 GGGTCCACATGCCAGTGTG 60.973 63.158 6.92 6.92 46.98 3.82
842 843 2.436109 GGGTCCACATGCCAGTGT 59.564 61.111 0.00 0.00 37.82 3.55
991 1013 2.625823 CCGCCGCCATTTTCTGTGT 61.626 57.895 0.00 0.00 0.00 3.72
1044 1072 2.824489 TCGCGTCCGCTCATCTCT 60.824 61.111 5.77 0.00 39.32 3.10
1172 1200 1.551452 CGAAGGACAGAGGAAGAGGT 58.449 55.000 0.00 0.00 0.00 3.85
1177 1205 4.208426 TGGCGAAGGACAGAGGAA 57.792 55.556 0.00 0.00 0.00 3.36
1189 1217 1.176619 TCGAGTGGAAGAACTGGCGA 61.177 55.000 0.00 0.00 0.00 5.54
1206 1234 0.697010 CAGCAAAATTTCGCACGTCG 59.303 50.000 3.56 0.00 40.15 5.12
1209 1237 1.574477 CGATCAGCAAAATTTCGCACG 59.426 47.619 3.56 0.43 0.00 5.34
1213 1241 8.051909 CCAAAAATATCGATCAGCAAAATTTCG 58.948 33.333 0.00 0.00 0.00 3.46
1215 1243 8.776376 ACCAAAAATATCGATCAGCAAAATTT 57.224 26.923 0.00 0.00 0.00 1.82
1218 1246 9.698309 TTAAACCAAAAATATCGATCAGCAAAA 57.302 25.926 0.00 0.00 0.00 2.44
1225 1253 7.787480 GCGCATTTTAAACCAAAAATATCGATC 59.213 33.333 0.00 0.00 39.51 3.69
1235 1263 1.605712 CCCCGCGCATTTTAAACCAAA 60.606 47.619 8.75 0.00 0.00 3.28
1253 1281 2.276740 CCTGGAGCAATCACCCCC 59.723 66.667 0.00 0.00 0.00 5.40
1313 1341 1.024579 AATAACGAAGCAGTGGGGCG 61.025 55.000 0.00 0.00 39.27 6.13
1364 1392 3.184379 TCAGTTTGTTCAAATCGAGAGCG 59.816 43.478 1.33 0.00 39.35 5.03
1458 1488 4.755123 AGTAGACATTTAGCAAAGCAACGT 59.245 37.500 0.00 0.00 0.00 3.99
1479 1509 5.708948 CTCTCACTCTTCAAGATCGAAAGT 58.291 41.667 0.00 0.00 0.00 2.66
1576 1611 0.031585 TCAACGACCGGACAAGACAG 59.968 55.000 9.46 0.00 0.00 3.51
1751 1786 3.248363 CGAAAGATGCACAAAGACAGACA 59.752 43.478 0.00 0.00 0.00 3.41
1918 1956 0.040603 GCAGAATAAGCCGATGCAGC 60.041 55.000 0.00 0.00 41.13 5.25
1925 1963 5.173774 ACATTAACATGCAGAATAAGCCG 57.826 39.130 0.00 0.00 33.05 5.52
1970 2008 8.712228 TGAAGAGATAATCTGGAGTGCTAATA 57.288 34.615 0.00 0.00 38.67 0.98
1971 2009 7.609097 TGAAGAGATAATCTGGAGTGCTAAT 57.391 36.000 0.00 0.00 38.67 1.73
1973 2011 6.518032 GCATGAAGAGATAATCTGGAGTGCTA 60.518 42.308 0.00 0.00 38.67 3.49
1974 2012 5.742546 GCATGAAGAGATAATCTGGAGTGCT 60.743 44.000 0.00 0.00 38.67 4.40
1975 2013 4.451774 GCATGAAGAGATAATCTGGAGTGC 59.548 45.833 0.00 0.00 38.67 4.40
1976 2014 5.608449 TGCATGAAGAGATAATCTGGAGTG 58.392 41.667 0.00 0.00 38.67 3.51
1977 2015 5.883685 TGCATGAAGAGATAATCTGGAGT 57.116 39.130 0.00 0.00 38.67 3.85
1978 2016 6.465084 TGATGCATGAAGAGATAATCTGGAG 58.535 40.000 2.46 0.00 38.67 3.86
1983 2052 7.656542 TGAGAACTGATGCATGAAGAGATAATC 59.343 37.037 2.46 0.00 0.00 1.75
2057 2126 8.725405 TTCAGTTCAAGTAACAGATAACAACA 57.275 30.769 0.00 0.00 40.83 3.33
2079 2149 5.661312 ACTAAGCACTACTGATGGGTATTCA 59.339 40.000 0.00 0.00 0.00 2.57
2090 2160 4.871513 TCTCAACACACTAAGCACTACTG 58.128 43.478 0.00 0.00 0.00 2.74
2137 2207 9.765795 ATGTAACTCTGTAAGAATTAGGCATAC 57.234 33.333 0.00 0.00 46.34 2.39
2138 2208 9.982651 GATGTAACTCTGTAAGAATTAGGCATA 57.017 33.333 0.00 0.00 46.34 3.14
2139 2209 7.934120 GGATGTAACTCTGTAAGAATTAGGCAT 59.066 37.037 0.00 0.00 46.34 4.40
2142 2212 6.421202 GCGGATGTAACTCTGTAAGAATTAGG 59.579 42.308 0.00 0.00 46.34 2.69
2163 2233 4.471761 TGCAGTCAACATTGCGGA 57.528 50.000 0.00 0.00 43.13 5.54
2174 2244 4.219288 ACCTCATTTTTGAATCCTGCAGTC 59.781 41.667 13.81 4.29 0.00 3.51
2204 2274 0.748005 TGGGCTCCGCATTAAGCTTC 60.748 55.000 0.00 0.00 42.61 3.86
2276 2346 4.980573 TGGTTGAGCAGTACTTACCAATT 58.019 39.130 0.00 0.00 39.24 2.32
2345 2415 5.008019 AGCTCCGCATAGTTGTATGATTTTG 59.992 40.000 0.00 0.00 38.76 2.44
2350 2420 2.959030 AGAGCTCCGCATAGTTGTATGA 59.041 45.455 10.93 0.00 38.76 2.15
2389 2460 3.289128 CAGAAGACTGGACGTGCAA 57.711 52.632 11.97 0.00 40.14 4.08
2406 2477 5.068987 AGCAGAGCCAAAATAAAGACAAACA 59.931 36.000 0.00 0.00 0.00 2.83
2550 2621 1.888436 CGTGCCAGGGAGCTAGACAA 61.888 60.000 0.00 0.00 0.00 3.18
2571 2642 8.523523 TCAGTGATGCTTTTGTTTTATCAATG 57.476 30.769 0.00 0.00 42.11 2.82
2644 2715 9.149225 GATATTTCCATGTACTAGCTCATCTTG 57.851 37.037 0.00 0.00 0.00 3.02
2791 2862 5.961272 TGGCCAAACTTTATAGCTAAAAGC 58.039 37.500 0.61 11.41 42.84 3.51
2792 2863 8.303876 TCTTTGGCCAAACTTTATAGCTAAAAG 58.696 33.333 27.13 11.27 39.38 2.27
2944 3019 2.370281 ACATCTTGCGACACCTACAG 57.630 50.000 0.00 0.00 0.00 2.74
2954 3029 5.277974 CCCTCCATATGTAAAACATCTTGCG 60.278 44.000 1.24 0.00 39.88 4.85
3017 3092 3.945285 TCTCCTTTGACAAATTATCCCGC 59.055 43.478 0.05 0.00 0.00 6.13
3148 3226 7.303634 CGTACAGCACAAAATAAAGGACTAT 57.696 36.000 0.00 0.00 0.00 2.12
3150 3228 5.607119 CGTACAGCACAAAATAAAGGACT 57.393 39.130 0.00 0.00 0.00 3.85
3172 3252 3.740115 TCTGGGTTTAGACAAGACAAGC 58.260 45.455 0.00 0.00 0.00 4.01
3173 3253 6.055588 TCTTTCTGGGTTTAGACAAGACAAG 58.944 40.000 0.00 0.00 0.00 3.16
3200 3280 5.404096 TCAATACGTCTAAAGCGACAATGA 58.596 37.500 0.00 0.00 33.54 2.57
3201 3281 5.696260 TCAATACGTCTAAAGCGACAATG 57.304 39.130 0.00 0.00 33.54 2.82
3206 3286 2.426024 AGGCTCAATACGTCTAAAGCGA 59.574 45.455 0.00 0.00 0.00 4.93
3217 3297 9.211485 CTCTACTACTCTTACTAGGCTCAATAC 57.789 40.741 0.00 0.00 0.00 1.89
3268 3348 1.909302 ACCTGCAGGCTATGTGTAACT 59.091 47.619 33.06 5.36 39.32 2.24
3596 3678 8.198109 ACAAGTGATTATACTTAGCACTACCTG 58.802 37.037 0.00 0.00 38.78 4.00
3684 3766 8.043113 AGTGAACTATGTGTCATGTGTGAATAT 58.957 33.333 0.00 0.00 35.80 1.28
3690 3772 5.233225 CAGAGTGAACTATGTGTCATGTGT 58.767 41.667 0.00 0.00 31.03 3.72
3691 3773 4.092529 GCAGAGTGAACTATGTGTCATGTG 59.907 45.833 6.92 0.00 37.50 3.21
3738 3821 4.588106 TCCATGAATTTGTGCCTTTTCTCA 59.412 37.500 0.00 0.00 0.00 3.27
3753 3836 4.773674 TCAGCCACAAAATTCTCCATGAAT 59.226 37.500 0.00 0.00 46.49 2.57
3800 3883 1.064017 TGGTTGGTCAACTTCAAGCCT 60.064 47.619 12.75 0.00 40.94 4.58
3878 3961 5.298276 TGGTAATCCATGGCTTTTTATCGAC 59.702 40.000 6.96 0.00 39.03 4.20
3992 4077 4.078571 ACCAGGGACTCAACAGGATATCTA 60.079 45.833 2.05 0.00 34.60 1.98
3999 4084 0.890996 GCAACCAGGGACTCAACAGG 60.891 60.000 0.00 0.00 34.60 4.00
4000 4085 0.109342 AGCAACCAGGGACTCAACAG 59.891 55.000 0.00 0.00 34.60 3.16
4001 4086 0.179020 CAGCAACCAGGGACTCAACA 60.179 55.000 0.00 0.00 34.60 3.33
4002 4087 1.518903 GCAGCAACCAGGGACTCAAC 61.519 60.000 0.00 0.00 34.60 3.18
4003 4088 1.228245 GCAGCAACCAGGGACTCAA 60.228 57.895 0.00 0.00 34.60 3.02
4004 4089 2.431683 GCAGCAACCAGGGACTCA 59.568 61.111 0.00 0.00 34.60 3.41
4083 4173 9.585099 TTTTTAAATAAATGCGCTCTCAATCAT 57.415 25.926 9.73 0.00 0.00 2.45
4167 4305 0.107116 AGGTGTTGTTGTTACCGGCA 60.107 50.000 0.00 0.00 39.46 5.69
4427 4585 0.900182 ACCACATCAGCCTCGTCTGA 60.900 55.000 7.11 7.11 45.97 3.27
4492 4669 0.661552 CGCTCTTCATGAAGCATGGG 59.338 55.000 27.45 21.78 41.66 4.00
4559 4736 3.536917 CATCCTCCGCCGCTACCA 61.537 66.667 0.00 0.00 0.00 3.25


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.