Multiple sequence alignment - TraesCS1B01G176600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G176600 chr1B 100.000 5148 0 0 1 5148 317845372 317850519 0.000000e+00 9507.0
1 TraesCS1B01G176600 chr1D 94.652 3104 123 21 1 3074 221887360 221884270 0.000000e+00 4772.0
2 TraesCS1B01G176600 chr1D 86.441 590 53 10 4370 4943 221882422 221881844 5.660000e-174 621.0
3 TraesCS1B01G176600 chr1D 86.755 453 42 8 3076 3527 221883625 221883190 5.990000e-134 488.0
4 TraesCS1B01G176600 chr1D 87.470 415 39 9 3449 3851 221883186 221882773 2.810000e-127 466.0
5 TraesCS1B01G176600 chr1D 88.699 292 28 3 3960 4247 221882770 221882480 8.200000e-93 351.0
6 TraesCS1B01G176600 chr1D 96.875 32 1 0 4308 4339 221882446 221882415 3.000000e-03 54.7
7 TraesCS1B01G176600 chr1A 95.152 2702 113 10 1163 3855 287315226 287312534 0.000000e+00 4248.0
8 TraesCS1B01G176600 chr1A 92.769 1051 54 7 3958 4992 287312537 287311493 0.000000e+00 1500.0
9 TraesCS1B01G176600 chr1A 94.087 778 28 9 1 771 287542729 287541963 0.000000e+00 1166.0
10 TraesCS1B01G176600 chr1A 90.832 469 21 8 301 766 287316959 287316510 4.410000e-170 608.0
11 TraesCS1B01G176600 chr1A 95.114 307 14 1 861 1166 287316048 287315742 2.790000e-132 483.0
12 TraesCS1B01G176600 chr1A 93.103 116 8 0 3854 3969 157358151 157358036 2.460000e-38 171.0
13 TraesCS1B01G176600 chr1A 93.694 111 7 0 3851 3961 58903733 58903843 3.190000e-37 167.0
14 TraesCS1B01G176600 chr5B 93.333 165 10 1 4985 5148 98516750 98516914 5.150000e-60 243.0
15 TraesCS1B01G176600 chr5B 95.455 110 5 0 3852 3961 622393443 622393552 5.300000e-40 176.0
16 TraesCS1B01G176600 chr4B 92.073 164 13 0 4985 5148 449100361 449100524 1.110000e-56 231.0
17 TraesCS1B01G176600 chr4B 90.303 165 10 2 4985 5148 7855955 7855796 1.450000e-50 211.0
18 TraesCS1B01G176600 chr2B 92.121 165 12 1 4985 5148 94040143 94040307 1.110000e-56 231.0
19 TraesCS1B01G176600 chr2B 94.737 114 6 0 3848 3961 764753866 764753979 1.470000e-40 178.0
20 TraesCS1B01G176600 chr2B 98.485 66 1 0 5050 5115 708323906 708323841 3.260000e-22 117.0
21 TraesCS1B01G176600 chr7A 91.463 164 13 1 4983 5146 665123589 665123751 1.870000e-54 224.0
22 TraesCS1B01G176600 chr5D 94.118 119 5 1 3845 3963 70640477 70640593 4.100000e-41 180.0
23 TraesCS1B01G176600 chr5A 94.545 110 5 1 3854 3963 633982353 633982461 8.860000e-38 169.0
24 TraesCS1B01G176600 chr5A 92.982 114 8 0 3848 3961 688927659 688927546 3.190000e-37 167.0
25 TraesCS1B01G176600 chr4A 90.984 122 11 0 3840 3961 155289709 155289588 1.150000e-36 165.0
26 TraesCS1B01G176600 chr2D 93.636 110 7 0 3852 3961 637342564 637342673 1.150000e-36 165.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G176600 chr1B 317845372 317850519 5147 False 9507.00 9507 100.000000 1 5148 1 chr1B.!!$F1 5147
1 TraesCS1B01G176600 chr1D 221881844 221887360 5516 True 1125.45 4772 90.148667 1 4943 6 chr1D.!!$R1 4942
2 TraesCS1B01G176600 chr1A 287311493 287316959 5466 True 1709.75 4248 93.466750 301 4992 4 chr1A.!!$R3 4691
3 TraesCS1B01G176600 chr1A 287541963 287542729 766 True 1166.00 1166 94.087000 1 771 1 chr1A.!!$R2 770

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
501 505 0.951040 GTGACAAGCCTCCAGTTCCG 60.951 60.0 0.00 0.0 0.00 4.30 F
1732 2638 0.251877 TGTCGGGAGGATGTACCACA 60.252 55.0 0.00 0.0 42.04 4.17 F
2353 3259 1.114722 CCTGTGCTGCAAAGGGGAAA 61.115 55.0 27.98 0.0 35.31 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2397 3303 0.690192 TCCGATGCTCTGGTTCCAAA 59.310 50.0 0.0 0.0 0.00 3.28 R
2870 3784 0.037046 CATCCAAACCCAAAGGCAGC 60.037 55.0 0.0 0.0 36.11 5.25 R
4244 5905 0.250234 CCAGCACTCTCCGAAATCCA 59.750 55.0 0.0 0.0 0.00 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 8.819974 CCTGTCTGTCTTAGTTAAAAACGTTTA 58.180 33.333 15.03 0.00 36.23 2.01
186 190 2.241941 ATGATGGCACATCCACCACTTA 59.758 45.455 11.25 0.00 42.45 2.24
272 276 4.120331 GTGATGCAACAGGGCGGC 62.120 66.667 0.00 0.00 36.28 6.53
501 505 0.951040 GTGACAAGCCTCCAGTTCCG 60.951 60.000 0.00 0.00 0.00 4.30
561 565 4.487948 CATTCGAAATTGGAGTGCACATT 58.512 39.130 21.04 6.98 0.00 2.71
690 696 1.043673 ACTGAGATCCCGGCCTGTAC 61.044 60.000 0.00 0.00 0.00 2.90
731 740 3.367703 GGAATGAACTCCATTTGCACCAG 60.368 47.826 0.00 0.00 45.00 4.00
732 741 2.363306 TGAACTCCATTTGCACCAGT 57.637 45.000 0.00 0.00 0.00 4.00
754 764 7.138736 CAGTTCCCGTAGCAAAATTATATTGG 58.861 38.462 0.00 0.00 0.00 3.16
755 765 6.264518 AGTTCCCGTAGCAAAATTATATTGGG 59.735 38.462 0.00 0.00 0.00 4.12
756 766 5.074115 TCCCGTAGCAAAATTATATTGGGG 58.926 41.667 0.00 0.00 33.67 4.96
767 777 9.184523 CAAAATTATATTGGGGAGTCTAACACA 57.815 33.333 0.00 0.00 0.00 3.72
807 1136 9.968870 ACTTTCTCCTATGAGTAATCGAATAAC 57.031 33.333 0.00 0.00 39.75 1.89
860 1189 8.479313 AACGCGATGACATTGTAATCATATAT 57.521 30.769 15.93 0.00 35.67 0.86
879 1261 2.877097 TTCTGCCATGCTTCTGGTTA 57.123 45.000 0.00 0.00 38.63 2.85
922 1304 4.152402 CGAACTCCTCCTGTGTGTATTTTG 59.848 45.833 0.00 0.00 0.00 2.44
942 1324 1.931906 CAGTCAGTCATCATCACCGG 58.068 55.000 0.00 0.00 0.00 5.28
1276 2182 2.997315 CCGAGCTCCACACCCTCA 60.997 66.667 8.47 0.00 0.00 3.86
1677 2583 1.694169 CCCCTCTGTGGCCACCTAT 60.694 63.158 32.62 0.00 0.00 2.57
1681 2587 3.248024 CCCTCTGTGGCCACCTATAATA 58.752 50.000 32.62 11.58 0.00 0.98
1732 2638 0.251877 TGTCGGGAGGATGTACCACA 60.252 55.000 0.00 0.00 42.04 4.17
1869 2775 2.865119 TTGAGGAGATGAAGCAGCAA 57.135 45.000 0.00 0.00 0.00 3.91
1981 2887 3.432445 ATGCAGGATCTGGGGCTGC 62.432 63.158 12.41 12.41 40.98 5.25
2220 3126 7.362834 CCAAATGTCAGAACATACAATTGCCTA 60.363 37.037 5.05 0.00 45.48 3.93
2310 3216 7.398024 AGAAAGGTGTTAGAGCTGATATTGTT 58.602 34.615 0.00 0.00 30.84 2.83
2353 3259 1.114722 CCTGTGCTGCAAAGGGGAAA 61.115 55.000 27.98 0.00 35.31 3.13
2397 3303 4.158786 TGGATGAAATGTTGATGGTTGGT 58.841 39.130 0.00 0.00 0.00 3.67
2550 3456 3.023119 TGTGTTCATCAAGCACCTTTGT 58.977 40.909 0.00 0.00 32.62 2.83
2625 3531 4.203654 AGGTCTCGTTCCAAATAAGGTC 57.796 45.455 0.00 0.00 0.00 3.85
2649 3555 4.540099 ACCTATGAAACAATCAAGGAGGGA 59.460 41.667 11.19 0.00 42.54 4.20
2688 3594 3.833070 ACGTTCCTGATGTAAGAGGACTT 59.167 43.478 0.00 0.00 38.14 3.01
2689 3595 5.014858 ACGTTCCTGATGTAAGAGGACTTA 58.985 41.667 0.00 0.00 38.14 2.24
2745 3651 4.688879 TGAAACGCTTGGTATGTTCTAGTG 59.311 41.667 0.00 0.00 0.00 2.74
2763 3669 7.182817 TCTAGTGATGTACCAACATAGCTTT 57.817 36.000 0.00 0.00 46.49 3.51
2795 3701 5.796350 ACTTATACCTAGCAAACAAAGCG 57.204 39.130 0.00 0.00 37.01 4.68
2802 3708 4.024302 ACCTAGCAAACAAAGCGAGTAAAC 60.024 41.667 0.00 0.00 33.58 2.01
2835 3741 8.961294 TGGATTGTTGTTGAAATGAGAAATTT 57.039 26.923 0.00 0.00 0.00 1.82
2842 3748 6.445475 TGTTGAAATGAGAAATTTGCGATCA 58.555 32.000 0.00 0.00 0.00 2.92
2870 3784 5.854010 TCTGCTAGGTCATAGTTTACCAG 57.146 43.478 0.00 0.00 38.30 4.00
2875 3789 2.092914 AGGTCATAGTTTACCAGCTGCC 60.093 50.000 8.66 0.00 38.30 4.85
2907 3821 5.439721 TGGATGTGATCATTTGGTCCTTAG 58.560 41.667 0.00 0.00 34.06 2.18
2982 3896 3.508793 TCGTTCTCGATCCAACTACCTTT 59.491 43.478 0.00 0.00 41.35 3.11
3003 3917 4.893424 TCAGCCAGTTCACAGTTTTAAC 57.107 40.909 0.00 0.00 0.00 2.01
3009 3923 7.220108 CAGCCAGTTCACAGTTTTAACTTTTAC 59.780 37.037 0.00 0.00 37.08 2.01
3018 3932 7.274686 CACAGTTTTAACTTTTACTGGTTGGTG 59.725 37.037 0.00 0.00 41.69 4.17
3029 3943 3.642141 ACTGGTTGGTGTTTTCTTGGAT 58.358 40.909 0.00 0.00 0.00 3.41
3036 3950 3.117701 TGGTGTTTTCTTGGATCCAGTCA 60.118 43.478 15.53 0.00 0.00 3.41
3052 3966 2.859538 CAGTCATTTTGGTGTGCACAAC 59.140 45.455 28.15 28.15 0.00 3.32
3058 3972 0.169230 TTGGTGTGCACAACGTGTTC 59.831 50.000 28.67 11.38 36.03 3.18
3078 4635 5.888724 TGTTCCACATTGAAGGAAGTAAACA 59.111 36.000 13.15 7.52 44.08 2.83
3099 4656 0.668535 AAGCGAACCAGGCAAACTTC 59.331 50.000 0.00 0.00 0.00 3.01
3170 4727 7.435068 TCATTTTGGCTTTCAGAGTACTTAC 57.565 36.000 0.00 0.00 0.00 2.34
3173 4730 5.499004 TTGGCTTTCAGAGTACTTACCAT 57.501 39.130 0.00 0.00 0.00 3.55
3221 4778 5.626142 TCCTATTTAGCAACACACAGGAAA 58.374 37.500 0.00 0.00 0.00 3.13
3233 4790 2.105821 ACACAGGAAATGAAGACCGGAA 59.894 45.455 9.46 0.00 0.00 4.30
3242 4799 1.305201 GAAGACCGGAAGCAAACACA 58.695 50.000 9.46 0.00 0.00 3.72
3291 4848 3.902881 ATCTGAAAGTGCTCACCTAGG 57.097 47.619 7.41 7.41 33.76 3.02
3342 4899 7.864108 TCTGTTACTGTATAGCCTACGTTTA 57.136 36.000 0.00 0.00 0.00 2.01
3466 5028 4.713792 ATTTCCTCACTTGTCCTTGAGT 57.286 40.909 0.00 0.00 38.06 3.41
3481 5043 4.008330 CCTTGAGTAGAAGACTGGTCGTA 58.992 47.826 0.00 0.00 39.06 3.43
3515 5159 4.317671 AGAAGTAATATTCACGGTCCCG 57.682 45.455 3.76 3.76 46.03 5.14
3548 5192 4.832266 ACAAATGAAATGCAACCAGGAGTA 59.168 37.500 0.00 0.00 0.00 2.59
3580 5227 2.325484 GGTGGAAACAAGATTTGGGGT 58.675 47.619 0.00 0.00 46.06 4.95
3601 5248 0.413434 TCCATCTCCCCTGTGAGTCA 59.587 55.000 0.00 0.00 33.93 3.41
3628 5276 2.823984 TGAGGTGCAGCAAAATGTTTG 58.176 42.857 19.63 0.00 0.00 2.93
3636 5284 3.529533 CAGCAAAATGTTTGTCACCCAA 58.470 40.909 2.92 0.00 0.00 4.12
3658 5307 8.711457 CCCAAATAATGAATCTGAAAACAACAC 58.289 33.333 0.00 0.00 0.00 3.32
3780 5436 0.523072 CAGATGTTTGAGCCCCAACG 59.477 55.000 0.00 0.00 33.85 4.10
3781 5437 0.110486 AGATGTTTGAGCCCCAACGT 59.890 50.000 0.00 0.00 33.85 3.99
3822 5478 6.314784 GTTCCAAATCATTTCGAGGTTGTAG 58.685 40.000 0.00 0.00 0.00 2.74
3832 5488 4.092771 TCGAGGTTGTAGAAATCTCACG 57.907 45.455 0.00 0.00 0.00 4.35
3851 5507 6.288941 TCACGTGAGAAATGGGAATAAGTA 57.711 37.500 15.76 0.00 0.00 2.24
3852 5508 6.338146 TCACGTGAGAAATGGGAATAAGTAG 58.662 40.000 15.76 0.00 0.00 2.57
3853 5509 6.070995 TCACGTGAGAAATGGGAATAAGTAGT 60.071 38.462 15.76 0.00 0.00 2.73
3854 5510 7.123098 TCACGTGAGAAATGGGAATAAGTAGTA 59.877 37.037 15.76 0.00 0.00 1.82
3855 5511 7.222224 CACGTGAGAAATGGGAATAAGTAGTAC 59.778 40.741 10.90 0.00 0.00 2.73
3856 5512 7.123847 ACGTGAGAAATGGGAATAAGTAGTACT 59.876 37.037 0.00 0.00 0.00 2.73
3857 5513 7.648510 CGTGAGAAATGGGAATAAGTAGTACTC 59.351 40.741 2.58 0.00 0.00 2.59
3858 5514 7.927092 GTGAGAAATGGGAATAAGTAGTACTCC 59.073 40.741 2.58 0.41 0.00 3.85
3859 5515 7.070821 TGAGAAATGGGAATAAGTAGTACTCCC 59.929 40.741 15.43 15.43 45.24 4.30
3860 5516 7.140304 AGAAATGGGAATAAGTAGTACTCCCT 58.860 38.462 20.48 6.22 45.25 4.20
3861 5517 6.997942 AATGGGAATAAGTAGTACTCCCTC 57.002 41.667 20.48 10.41 45.25 4.30
3862 5518 4.812653 TGGGAATAAGTAGTACTCCCTCC 58.187 47.826 20.48 16.60 45.25 4.30
3863 5519 3.825585 GGGAATAAGTAGTACTCCCTCCG 59.174 52.174 15.14 0.00 42.25 4.63
3864 5520 4.468713 GGAATAAGTAGTACTCCCTCCGT 58.531 47.826 2.58 0.00 0.00 4.69
3865 5521 4.892345 GGAATAAGTAGTACTCCCTCCGTT 59.108 45.833 2.58 0.00 0.00 4.44
3866 5522 5.009510 GGAATAAGTAGTACTCCCTCCGTTC 59.990 48.000 2.58 3.05 0.00 3.95
3867 5523 3.446442 AAGTAGTACTCCCTCCGTTCA 57.554 47.619 2.58 0.00 0.00 3.18
3868 5524 2.720915 AGTAGTACTCCCTCCGTTCAC 58.279 52.381 0.00 0.00 0.00 3.18
3869 5525 2.308275 AGTAGTACTCCCTCCGTTCACT 59.692 50.000 0.00 0.00 0.00 3.41
3870 5526 2.305858 AGTACTCCCTCCGTTCACTT 57.694 50.000 0.00 0.00 0.00 3.16
3871 5527 2.606378 AGTACTCCCTCCGTTCACTTT 58.394 47.619 0.00 0.00 0.00 2.66
3872 5528 2.970640 AGTACTCCCTCCGTTCACTTTT 59.029 45.455 0.00 0.00 0.00 2.27
3873 5529 2.256117 ACTCCCTCCGTTCACTTTTG 57.744 50.000 0.00 0.00 0.00 2.44
3874 5530 1.489230 ACTCCCTCCGTTCACTTTTGT 59.511 47.619 0.00 0.00 0.00 2.83
3875 5531 2.701951 ACTCCCTCCGTTCACTTTTGTA 59.298 45.455 0.00 0.00 0.00 2.41
3876 5532 3.135167 ACTCCCTCCGTTCACTTTTGTAA 59.865 43.478 0.00 0.00 0.00 2.41
3877 5533 3.735591 TCCCTCCGTTCACTTTTGTAAG 58.264 45.455 0.00 0.00 37.40 2.34
3878 5534 3.135167 TCCCTCCGTTCACTTTTGTAAGT 59.865 43.478 0.00 0.00 45.40 2.24
3879 5535 3.881089 CCCTCCGTTCACTTTTGTAAGTT 59.119 43.478 0.00 0.00 41.85 2.66
3880 5536 4.261031 CCCTCCGTTCACTTTTGTAAGTTG 60.261 45.833 0.00 0.00 41.85 3.16
3881 5537 4.334481 CCTCCGTTCACTTTTGTAAGTTGT 59.666 41.667 0.00 0.00 41.85 3.32
3882 5538 5.163693 CCTCCGTTCACTTTTGTAAGTTGTT 60.164 40.000 0.00 0.00 41.85 2.83
3883 5539 6.256912 TCCGTTCACTTTTGTAAGTTGTTT 57.743 33.333 0.00 0.00 41.85 2.83
3884 5540 6.316319 TCCGTTCACTTTTGTAAGTTGTTTC 58.684 36.000 0.00 0.00 41.85 2.78
3885 5541 6.072618 TCCGTTCACTTTTGTAAGTTGTTTCA 60.073 34.615 0.00 0.00 41.85 2.69
3886 5542 6.250527 CCGTTCACTTTTGTAAGTTGTTTCAG 59.749 38.462 0.00 0.00 41.85 3.02
3887 5543 7.018826 CGTTCACTTTTGTAAGTTGTTTCAGA 58.981 34.615 0.00 0.00 41.85 3.27
3888 5544 7.007099 CGTTCACTTTTGTAAGTTGTTTCAGAC 59.993 37.037 0.00 0.00 41.85 3.51
3889 5545 7.441890 TCACTTTTGTAAGTTGTTTCAGACA 57.558 32.000 0.00 0.00 41.85 3.41
3890 5546 7.877003 TCACTTTTGTAAGTTGTTTCAGACAA 58.123 30.769 0.00 0.00 41.85 3.18
3902 5558 5.587289 TGTTTCAGACAACACAAAATAGGC 58.413 37.500 0.00 0.00 34.69 3.93
3903 5559 5.359576 TGTTTCAGACAACACAAAATAGGCT 59.640 36.000 0.00 0.00 34.69 4.58
3904 5560 5.437289 TTCAGACAACACAAAATAGGCTG 57.563 39.130 0.00 0.00 0.00 4.85
3905 5561 4.460263 TCAGACAACACAAAATAGGCTGT 58.540 39.130 0.00 0.00 0.00 4.40
3906 5562 4.887071 TCAGACAACACAAAATAGGCTGTT 59.113 37.500 0.00 0.00 0.00 3.16
3907 5563 5.359576 TCAGACAACACAAAATAGGCTGTTT 59.640 36.000 3.12 3.12 0.00 2.83
3908 5564 6.042143 CAGACAACACAAAATAGGCTGTTTT 58.958 36.000 15.20 15.20 0.00 2.43
3909 5565 6.019640 CAGACAACACAAAATAGGCTGTTTTG 60.020 38.462 33.93 33.93 46.64 2.44
3910 5566 4.570369 ACAACACAAAATAGGCTGTTTTGC 59.430 37.500 34.87 0.00 45.70 3.68
3911 5567 4.399004 ACACAAAATAGGCTGTTTTGCA 57.601 36.364 34.87 1.37 45.70 4.08
3912 5568 4.119136 ACACAAAATAGGCTGTTTTGCAC 58.881 39.130 34.87 0.00 45.70 4.57
3913 5569 4.118410 CACAAAATAGGCTGTTTTGCACA 58.882 39.130 34.87 0.00 45.70 4.57
3914 5570 4.751098 CACAAAATAGGCTGTTTTGCACAT 59.249 37.500 34.87 20.84 45.70 3.21
3915 5571 5.236911 CACAAAATAGGCTGTTTTGCACATT 59.763 36.000 34.87 20.55 45.70 2.71
3916 5572 5.236911 ACAAAATAGGCTGTTTTGCACATTG 59.763 36.000 34.87 19.70 45.70 2.82
3917 5573 4.605640 AATAGGCTGTTTTGCACATTGT 57.394 36.364 0.00 0.00 33.76 2.71
3918 5574 2.514205 AGGCTGTTTTGCACATTGTC 57.486 45.000 0.00 0.00 33.76 3.18
3919 5575 2.034124 AGGCTGTTTTGCACATTGTCT 58.966 42.857 0.00 0.00 33.76 3.41
3920 5576 3.221771 AGGCTGTTTTGCACATTGTCTA 58.778 40.909 0.00 0.00 33.76 2.59
3921 5577 3.636300 AGGCTGTTTTGCACATTGTCTAA 59.364 39.130 0.00 0.00 33.76 2.10
3922 5578 4.099266 AGGCTGTTTTGCACATTGTCTAAA 59.901 37.500 0.00 0.00 33.76 1.85
3923 5579 4.808364 GGCTGTTTTGCACATTGTCTAAAA 59.192 37.500 0.00 4.46 33.76 1.52
3924 5580 5.466393 GGCTGTTTTGCACATTGTCTAAAAT 59.534 36.000 9.59 0.00 33.76 1.82
3925 5581 6.357198 GCTGTTTTGCACATTGTCTAAAATG 58.643 36.000 9.59 0.00 42.21 2.32
3927 5583 7.462109 TGTTTTGCACATTGTCTAAAATGTC 57.538 32.000 9.59 0.00 45.47 3.06
3928 5584 7.264221 TGTTTTGCACATTGTCTAAAATGTCT 58.736 30.769 9.59 0.00 45.47 3.41
3929 5585 7.763528 TGTTTTGCACATTGTCTAAAATGTCTT 59.236 29.630 9.59 0.00 45.47 3.01
3930 5586 7.928908 TTTGCACATTGTCTAAAATGTCTTC 57.071 32.000 0.00 0.00 45.47 2.87
3931 5587 6.631971 TGCACATTGTCTAAAATGTCTTCA 57.368 33.333 0.00 0.00 45.47 3.02
3932 5588 7.036996 TGCACATTGTCTAAAATGTCTTCAA 57.963 32.000 0.00 0.00 45.47 2.69
3933 5589 7.140705 TGCACATTGTCTAAAATGTCTTCAAG 58.859 34.615 0.00 0.00 45.47 3.02
3934 5590 6.088616 GCACATTGTCTAAAATGTCTTCAAGC 59.911 38.462 0.00 0.00 45.47 4.01
3935 5591 7.365741 CACATTGTCTAAAATGTCTTCAAGCT 58.634 34.615 0.00 0.00 45.47 3.74
3936 5592 7.536622 CACATTGTCTAAAATGTCTTCAAGCTC 59.463 37.037 0.00 0.00 45.47 4.09
3937 5593 7.446625 ACATTGTCTAAAATGTCTTCAAGCTCT 59.553 33.333 0.00 0.00 45.47 4.09
3938 5594 7.807977 TTGTCTAAAATGTCTTCAAGCTCTT 57.192 32.000 0.00 0.00 0.00 2.85
3939 5595 8.902540 TTGTCTAAAATGTCTTCAAGCTCTTA 57.097 30.769 0.00 0.00 0.00 2.10
3940 5596 9.507329 TTGTCTAAAATGTCTTCAAGCTCTTAT 57.493 29.630 0.00 0.00 0.00 1.73
3948 5604 9.507329 AATGTCTTCAAGCTCTTATAAAAGTGA 57.493 29.630 0.00 0.00 34.13 3.41
3949 5605 8.902540 TGTCTTCAAGCTCTTATAAAAGTGAA 57.097 30.769 0.00 0.00 34.13 3.18
3950 5606 8.774586 TGTCTTCAAGCTCTTATAAAAGTGAAC 58.225 33.333 0.00 0.00 34.13 3.18
3951 5607 7.952637 GTCTTCAAGCTCTTATAAAAGTGAACG 59.047 37.037 0.00 0.00 34.13 3.95
3952 5608 6.721571 TCAAGCTCTTATAAAAGTGAACGG 57.278 37.500 0.00 0.00 34.13 4.44
3953 5609 6.460781 TCAAGCTCTTATAAAAGTGAACGGA 58.539 36.000 0.00 0.00 34.13 4.69
3954 5610 6.590292 TCAAGCTCTTATAAAAGTGAACGGAG 59.410 38.462 0.00 0.00 34.13 4.63
3955 5611 5.420409 AGCTCTTATAAAAGTGAACGGAGG 58.580 41.667 0.00 0.00 34.13 4.30
3956 5612 4.571176 GCTCTTATAAAAGTGAACGGAGGG 59.429 45.833 0.00 0.00 34.13 4.30
4096 5752 0.583438 CTTCAGCTTGTGTGTCCGTG 59.417 55.000 0.00 0.00 0.00 4.94
4116 5772 5.163723 CCGTGCAATTATTCTCAAGTGACAT 60.164 40.000 0.00 0.00 0.00 3.06
4118 5774 6.901887 CGTGCAATTATTCTCAAGTGACATAC 59.098 38.462 0.00 0.00 0.00 2.39
4159 5815 5.047092 TCTGCTCTTGTGATCTGAATGTACA 60.047 40.000 0.00 0.00 0.00 2.90
4236 5897 1.683365 CAATCTGGGTGGGCAAGGG 60.683 63.158 0.00 0.00 0.00 3.95
4244 5905 0.251787 GGTGGGCAAGGGTTCTGATT 60.252 55.000 0.00 0.00 0.00 2.57
4269 5938 2.997897 GGAGAGTGCTGGACGGGT 60.998 66.667 0.00 0.00 0.00 5.28
4272 5941 0.680280 GAGAGTGCTGGACGGGTAGA 60.680 60.000 0.00 0.00 0.00 2.59
4345 6064 9.442047 ACTAAACAGATTATATGCTTATCTGCC 57.558 33.333 10.11 0.00 45.78 4.85
4346 6065 9.440773 CTAAACAGATTATATGCTTATCTGCCA 57.559 33.333 10.11 0.00 45.78 4.92
4347 6066 8.874744 AAACAGATTATATGCTTATCTGCCAT 57.125 30.769 10.11 0.00 45.78 4.40
4348 6067 8.503458 AACAGATTATATGCTTATCTGCCATC 57.497 34.615 10.11 1.55 45.78 3.51
4349 6068 7.859540 ACAGATTATATGCTTATCTGCCATCT 58.140 34.615 10.11 3.22 45.78 2.90
4350 6069 7.769507 ACAGATTATATGCTTATCTGCCATCTG 59.230 37.037 10.11 13.00 45.78 2.90
4351 6070 7.769507 CAGATTATATGCTTATCTGCCATCTGT 59.230 37.037 0.00 0.00 38.95 3.41
4352 6071 8.327271 AGATTATATGCTTATCTGCCATCTGTT 58.673 33.333 0.00 0.00 0.00 3.16
4353 6072 7.677454 TTATATGCTTATCTGCCATCTGTTG 57.323 36.000 0.00 0.00 0.00 3.33
4355 6074 1.952296 GCTTATCTGCCATCTGTTGGG 59.048 52.381 6.87 0.00 46.55 4.12
4356 6075 2.421952 GCTTATCTGCCATCTGTTGGGA 60.422 50.000 6.87 2.99 46.55 4.37
4359 6078 4.248908 TGCCATCTGTTGGGAGGA 57.751 55.556 6.87 0.00 46.55 3.71
4360 6079 1.685224 TGCCATCTGTTGGGAGGAC 59.315 57.895 6.87 0.00 46.55 3.85
4361 6080 1.133181 TGCCATCTGTTGGGAGGACA 61.133 55.000 6.87 0.00 46.55 4.02
4362 6081 0.038166 GCCATCTGTTGGGAGGACAA 59.962 55.000 6.87 0.00 46.55 3.18
4363 6082 1.952367 GCCATCTGTTGGGAGGACAAG 60.952 57.143 6.87 0.00 46.55 3.16
4364 6083 1.630369 CCATCTGTTGGGAGGACAAGA 59.370 52.381 0.00 0.00 42.33 3.02
4365 6084 2.040278 CCATCTGTTGGGAGGACAAGAA 59.960 50.000 0.00 0.00 42.33 2.52
4366 6085 3.498481 CCATCTGTTGGGAGGACAAGAAA 60.498 47.826 0.00 0.00 42.33 2.52
4367 6086 3.208747 TCTGTTGGGAGGACAAGAAAC 57.791 47.619 0.00 0.00 0.00 2.78
4368 6087 2.507886 TCTGTTGGGAGGACAAGAAACA 59.492 45.455 0.00 0.00 0.00 2.83
4369 6088 3.053991 TCTGTTGGGAGGACAAGAAACAA 60.054 43.478 0.00 0.00 0.00 2.83
4370 6089 3.891366 CTGTTGGGAGGACAAGAAACAAT 59.109 43.478 0.00 0.00 0.00 2.71
4371 6090 5.055265 TGTTGGGAGGACAAGAAACAATA 57.945 39.130 0.00 0.00 0.00 1.90
4372 6091 5.640147 TGTTGGGAGGACAAGAAACAATAT 58.360 37.500 0.00 0.00 0.00 1.28
4373 6092 5.476599 TGTTGGGAGGACAAGAAACAATATG 59.523 40.000 0.00 0.00 0.00 1.78
4374 6093 4.599041 TGGGAGGACAAGAAACAATATGG 58.401 43.478 0.00 0.00 0.00 2.74
4422 6141 6.408428 GTTGAAATACAGGCGTATAGTTTCG 58.592 40.000 3.16 0.00 37.34 3.46
4443 6162 3.548770 GACATGATCTGGAGCCAAATCA 58.451 45.455 7.90 7.90 37.73 2.57
4458 6177 5.554822 CCAAATCAGGGCAAATTGAAATG 57.445 39.130 0.00 0.00 0.00 2.32
4516 6235 3.366883 CCAGATTCGAGTAGCTATCTGCC 60.367 52.174 14.06 0.00 41.55 4.85
4541 6260 5.123979 GGATACGGATATTTCCTGGATTTGC 59.876 44.000 0.00 0.00 40.17 3.68
4546 6265 0.041090 ATTTCCTGGATTTGCCCGGT 59.959 50.000 0.00 0.00 41.52 5.28
4547 6266 0.897863 TTTCCTGGATTTGCCCGGTG 60.898 55.000 0.00 0.00 41.52 4.94
4565 6284 4.298332 CGGTGGTTTCCTGAATTTGAAAG 58.702 43.478 0.00 0.00 31.55 2.62
4576 6295 5.221422 CCTGAATTTGAAAGCCAAAGGTACA 60.221 40.000 0.00 0.00 46.72 2.90
4712 6438 0.744771 GCCCAAGTCCCACGATCTTC 60.745 60.000 0.00 0.00 0.00 2.87
4723 6449 3.070018 CCACGATCTTCTGCTTTGTTCT 58.930 45.455 0.00 0.00 0.00 3.01
4785 6511 1.375908 CCAGCAGCCTAGCGTGAAA 60.376 57.895 0.00 0.00 40.15 2.69
4789 6515 0.806102 GCAGCCTAGCGTGAAATCGA 60.806 55.000 0.00 0.00 0.00 3.59
4898 6632 0.804364 CTTTGCGCTTATGGCACTCA 59.196 50.000 9.73 0.00 40.71 3.41
4911 6645 1.407851 GGCACTCATGGAGCAGATTGA 60.408 52.381 0.00 0.00 32.04 2.57
4943 6677 3.406361 CGTCGTGTCACTGCTGGC 61.406 66.667 0.65 0.00 0.00 4.85
4951 6685 1.541147 TGTCACTGCTGGCTTTATTGC 59.459 47.619 0.00 0.00 0.00 3.56
4988 6722 8.617761 TCTGTACCAAAATGTAAAACGTTTTC 57.382 30.769 28.31 19.39 43.26 2.29
4991 6725 9.420551 TGTACCAAAATGTAAAACGTTTTCTTT 57.579 25.926 28.31 21.28 43.26 2.52
5000 6734 9.857957 ATGTAAAACGTTTTCTTTAAAGGAACA 57.142 25.926 28.31 21.39 35.94 3.18
5001 6735 9.127006 TGTAAAACGTTTTCTTTAAAGGAACAC 57.873 29.630 28.31 16.33 35.94 3.32
5002 6736 9.127006 GTAAAACGTTTTCTTTAAAGGAACACA 57.873 29.630 28.31 3.72 35.94 3.72
5003 6737 7.806149 AAACGTTTTCTTTAAAGGAACACAG 57.194 32.000 23.13 15.83 35.94 3.66
5004 6738 6.746745 ACGTTTTCTTTAAAGGAACACAGA 57.253 33.333 23.13 5.29 35.94 3.41
5005 6739 7.329588 ACGTTTTCTTTAAAGGAACACAGAT 57.670 32.000 23.13 8.68 35.94 2.90
5006 6740 7.193595 ACGTTTTCTTTAAAGGAACACAGATG 58.806 34.615 23.13 12.60 35.94 2.90
5007 6741 7.148137 ACGTTTTCTTTAAAGGAACACAGATGT 60.148 33.333 23.13 13.06 36.56 3.06
5008 6742 7.165812 CGTTTTCTTTAAAGGAACACAGATGTG 59.834 37.037 23.13 11.35 41.05 3.21
5024 6758 5.751680 CAGATGTGTTCTGTTAAACTGGTG 58.248 41.667 0.00 0.00 45.79 4.17
5025 6759 5.296780 CAGATGTGTTCTGTTAAACTGGTGT 59.703 40.000 0.00 0.00 45.79 4.16
5026 6760 5.527582 AGATGTGTTCTGTTAAACTGGTGTC 59.472 40.000 0.00 0.00 31.79 3.67
5027 6761 3.942748 TGTGTTCTGTTAAACTGGTGTCC 59.057 43.478 0.00 0.00 0.00 4.02
5028 6762 4.196971 GTGTTCTGTTAAACTGGTGTCCT 58.803 43.478 0.00 0.00 0.00 3.85
5029 6763 4.035208 GTGTTCTGTTAAACTGGTGTCCTG 59.965 45.833 0.00 0.00 0.00 3.86
5030 6764 3.485463 TCTGTTAAACTGGTGTCCTGG 57.515 47.619 0.00 0.00 0.00 4.45
5031 6765 2.105821 TCTGTTAAACTGGTGTCCTGGG 59.894 50.000 0.00 0.00 0.00 4.45
5032 6766 1.244816 GTTAAACTGGTGTCCTGGGC 58.755 55.000 0.00 0.00 0.00 5.36
5033 6767 0.847373 TTAAACTGGTGTCCTGGGCA 59.153 50.000 0.00 0.00 0.00 5.36
5034 6768 1.072266 TAAACTGGTGTCCTGGGCAT 58.928 50.000 3.40 0.00 0.00 4.40
5035 6769 1.072266 AAACTGGTGTCCTGGGCATA 58.928 50.000 3.40 0.00 0.00 3.14
5036 6770 1.298953 AACTGGTGTCCTGGGCATAT 58.701 50.000 3.40 0.00 0.00 1.78
5037 6771 2.190398 ACTGGTGTCCTGGGCATATA 57.810 50.000 3.40 0.00 0.00 0.86
5038 6772 2.487775 ACTGGTGTCCTGGGCATATAA 58.512 47.619 3.40 0.00 0.00 0.98
5039 6773 2.172717 ACTGGTGTCCTGGGCATATAAC 59.827 50.000 3.40 0.00 0.00 1.89
5040 6774 1.493022 TGGTGTCCTGGGCATATAACC 59.507 52.381 3.40 0.37 0.00 2.85
5041 6775 1.493022 GGTGTCCTGGGCATATAACCA 59.507 52.381 3.40 0.00 35.05 3.67
5046 6780 2.346766 CTGGGCATATAACCAGCACA 57.653 50.000 10.84 0.01 46.78 4.57
5047 6781 1.949525 CTGGGCATATAACCAGCACAC 59.050 52.381 10.84 0.00 46.78 3.82
5048 6782 1.563879 TGGGCATATAACCAGCACACT 59.436 47.619 0.00 0.00 36.64 3.55
5049 6783 1.949525 GGGCATATAACCAGCACACTG 59.050 52.381 0.00 0.00 44.05 3.66
5062 6796 4.844267 CAGCACACTGGTTTAGTACAAAC 58.156 43.478 10.59 10.59 40.48 2.93
5063 6797 4.574828 CAGCACACTGGTTTAGTACAAACT 59.425 41.667 15.66 0.00 40.48 2.66
5064 6798 4.574828 AGCACACTGGTTTAGTACAAACTG 59.425 41.667 15.66 11.07 37.60 3.16
5065 6799 4.334481 GCACACTGGTTTAGTACAAACTGT 59.666 41.667 15.66 11.50 37.60 3.55
5066 6800 5.729454 GCACACTGGTTTAGTACAAACTGTG 60.729 44.000 23.78 23.78 37.60 3.66
5067 6801 4.879545 ACACTGGTTTAGTACAAACTGTGG 59.120 41.667 25.82 18.04 37.60 4.17
5068 6802 4.879545 CACTGGTTTAGTACAAACTGTGGT 59.120 41.667 21.34 13.58 37.60 4.16
5069 6803 6.050432 CACTGGTTTAGTACAAACTGTGGTA 58.950 40.000 21.34 0.00 37.60 3.25
5070 6804 6.202188 CACTGGTTTAGTACAAACTGTGGTAG 59.798 42.308 21.34 13.68 37.60 3.18
5071 6805 6.098695 ACTGGTTTAGTACAAACTGTGGTAGA 59.901 38.462 15.66 0.00 38.04 2.59
5072 6806 7.069877 TGGTTTAGTACAAACTGTGGTAGAT 57.930 36.000 15.66 0.00 36.36 1.98
5073 6807 6.932400 TGGTTTAGTACAAACTGTGGTAGATG 59.068 38.462 15.66 0.00 36.36 2.90
5074 6808 6.370718 GGTTTAGTACAAACTGTGGTAGATGG 59.629 42.308 15.66 0.00 36.36 3.51
5075 6809 3.939066 AGTACAAACTGTGGTAGATGGC 58.061 45.455 0.00 0.00 33.57 4.40
5076 6810 2.200373 ACAAACTGTGGTAGATGGCC 57.800 50.000 0.00 0.00 0.00 5.36
5077 6811 1.423541 ACAAACTGTGGTAGATGGCCA 59.576 47.619 8.56 8.56 0.00 5.36
5078 6812 2.158534 ACAAACTGTGGTAGATGGCCAA 60.159 45.455 10.96 0.00 37.81 4.52
5079 6813 3.091545 CAAACTGTGGTAGATGGCCAAT 58.908 45.455 10.96 3.81 37.81 3.16
5080 6814 2.717639 ACTGTGGTAGATGGCCAATC 57.282 50.000 10.96 8.39 37.81 2.67
5081 6815 1.212935 ACTGTGGTAGATGGCCAATCC 59.787 52.381 10.96 10.71 37.81 3.01
5089 6823 4.248908 TGGCCAATCCAGACCTCA 57.751 55.556 0.61 0.00 40.72 3.86
5090 6824 1.685224 TGGCCAATCCAGACCTCAC 59.315 57.895 0.61 0.00 40.72 3.51
5091 6825 1.450312 GGCCAATCCAGACCTCACG 60.450 63.158 0.00 0.00 34.01 4.35
5092 6826 1.596934 GCCAATCCAGACCTCACGA 59.403 57.895 0.00 0.00 0.00 4.35
5093 6827 0.179000 GCCAATCCAGACCTCACGAT 59.821 55.000 0.00 0.00 0.00 3.73
5094 6828 1.808133 GCCAATCCAGACCTCACGATC 60.808 57.143 0.00 0.00 0.00 3.69
5095 6829 1.536922 CCAATCCAGACCTCACGATCG 60.537 57.143 14.88 14.88 0.00 3.69
5096 6830 0.103208 AATCCAGACCTCACGATCGC 59.897 55.000 16.60 0.00 0.00 4.58
5097 6831 1.739338 ATCCAGACCTCACGATCGCC 61.739 60.000 16.60 0.00 0.00 5.54
5098 6832 2.710902 CCAGACCTCACGATCGCCA 61.711 63.158 16.60 0.00 0.00 5.69
5099 6833 1.439228 CAGACCTCACGATCGCCAT 59.561 57.895 16.60 0.00 0.00 4.40
5100 6834 0.596083 CAGACCTCACGATCGCCATC 60.596 60.000 16.60 6.20 0.00 3.51
5101 6835 1.300233 GACCTCACGATCGCCATCC 60.300 63.158 16.60 0.00 0.00 3.51
5102 6836 2.029666 CCTCACGATCGCCATCCC 59.970 66.667 16.60 0.00 0.00 3.85
5103 6837 2.029666 CTCACGATCGCCATCCCC 59.970 66.667 16.60 0.00 0.00 4.81
5104 6838 2.443952 TCACGATCGCCATCCCCT 60.444 61.111 16.60 0.00 0.00 4.79
5105 6839 1.152631 TCACGATCGCCATCCCCTA 60.153 57.895 16.60 0.00 0.00 3.53
5106 6840 0.757561 TCACGATCGCCATCCCCTAA 60.758 55.000 16.60 0.00 0.00 2.69
5107 6841 0.600255 CACGATCGCCATCCCCTAAC 60.600 60.000 16.60 0.00 0.00 2.34
5108 6842 1.046472 ACGATCGCCATCCCCTAACA 61.046 55.000 16.60 0.00 0.00 2.41
5109 6843 0.319900 CGATCGCCATCCCCTAACAG 60.320 60.000 0.26 0.00 0.00 3.16
5110 6844 1.048601 GATCGCCATCCCCTAACAGA 58.951 55.000 0.00 0.00 0.00 3.41
5111 6845 1.001406 GATCGCCATCCCCTAACAGAG 59.999 57.143 0.00 0.00 0.00 3.35
5112 6846 1.227674 CGCCATCCCCTAACAGAGC 60.228 63.158 0.00 0.00 0.00 4.09
5113 6847 1.227674 GCCATCCCCTAACAGAGCG 60.228 63.158 0.00 0.00 0.00 5.03
5114 6848 1.227674 CCATCCCCTAACAGAGCGC 60.228 63.158 0.00 0.00 0.00 5.92
5115 6849 1.227674 CATCCCCTAACAGAGCGCC 60.228 63.158 2.29 0.00 0.00 6.53
5116 6850 1.689233 ATCCCCTAACAGAGCGCCA 60.689 57.895 2.29 0.00 0.00 5.69
5117 6851 1.972660 ATCCCCTAACAGAGCGCCAC 61.973 60.000 2.29 0.00 0.00 5.01
5118 6852 2.509336 CCCTAACAGAGCGCCACG 60.509 66.667 2.29 0.00 0.00 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
84 85 4.768968 AGCTTAGGCATCATTGTTCAAACT 59.231 37.500 0.00 0.00 41.70 2.66
186 190 7.249186 TGTTTGTTACAACAGTAGCGTTTAT 57.751 32.000 0.00 0.00 40.50 1.40
501 505 1.334869 CAGGCCAAAGACAAGACACAC 59.665 52.381 5.01 0.00 0.00 3.82
561 565 1.276705 TCTACCAAACTGCGCCATGTA 59.723 47.619 4.18 0.00 0.00 2.29
731 740 6.443792 CCCAATATAATTTTGCTACGGGAAC 58.556 40.000 0.00 0.00 0.00 3.62
732 741 5.536916 CCCCAATATAATTTTGCTACGGGAA 59.463 40.000 0.00 0.00 28.62 3.97
754 764 9.668497 AGAAAACTTATAATGTGTTAGACTCCC 57.332 33.333 0.00 0.00 0.00 4.30
807 1136 8.696374 TGGATCCTACTAGTACAAGATTGAAAG 58.304 37.037 14.23 0.00 0.00 2.62
818 1147 4.040376 CGCGTTTTGGATCCTACTAGTAC 58.960 47.826 14.23 1.03 0.00 2.73
819 1148 3.947196 TCGCGTTTTGGATCCTACTAGTA 59.053 43.478 14.23 1.89 0.00 1.82
820 1149 2.756760 TCGCGTTTTGGATCCTACTAGT 59.243 45.455 14.23 0.00 0.00 2.57
821 1150 3.431922 TCGCGTTTTGGATCCTACTAG 57.568 47.619 14.23 3.10 0.00 2.57
822 1151 3.382227 TCATCGCGTTTTGGATCCTACTA 59.618 43.478 14.23 0.00 0.00 1.82
860 1189 2.877097 TAACCAGAAGCATGGCAGAA 57.123 45.000 0.00 0.00 44.80 3.02
879 1261 2.676076 GGCACAAACATTTCGCTTCAT 58.324 42.857 0.00 0.00 0.00 2.57
922 1304 1.284657 CGGTGATGATGACTGACTGC 58.715 55.000 0.00 0.00 0.00 4.40
942 1324 2.103373 TCTCAGTATCACAGCTCCCAC 58.897 52.381 0.00 0.00 0.00 4.61
1141 1528 3.878519 CGCGAGGGAGACGAGGTC 61.879 72.222 0.00 0.00 0.00 3.85
1677 2583 4.451435 CAGTAGCCGTCGATGAGAGTATTA 59.549 45.833 6.11 0.00 0.00 0.98
1681 2587 1.018148 CAGTAGCCGTCGATGAGAGT 58.982 55.000 6.11 0.00 0.00 3.24
1732 2638 1.667724 CTCCTTCAAAAGCGCATCGAT 59.332 47.619 11.47 0.00 0.00 3.59
2077 2983 3.008594 ACCACATTAGGTTCGACATTCCA 59.991 43.478 0.00 0.00 39.34 3.53
2172 3078 1.500736 CTAATCCCCTTCCCTGCCATT 59.499 52.381 0.00 0.00 0.00 3.16
2241 3147 1.354368 GAAACACTCCTCCAATCCCCA 59.646 52.381 0.00 0.00 0.00 4.96
2310 3216 7.852971 GGCACCAATAAGTGTATTGTAAGTA 57.147 36.000 5.90 0.00 43.50 2.24
2397 3303 0.690192 TCCGATGCTCTGGTTCCAAA 59.310 50.000 0.00 0.00 0.00 3.28
2550 3456 3.591789 CTCCTCCATCTTCCCCATTCTA 58.408 50.000 0.00 0.00 0.00 2.10
2625 3531 4.641989 CCCTCCTTGATTGTTTCATAGGTG 59.358 45.833 0.00 0.00 35.66 4.00
2649 3555 4.941873 GGAACGTAACCTTTCTCCATCATT 59.058 41.667 0.00 0.00 0.00 2.57
2745 3651 8.989980 GGTATAGAAAAGCTATGTTGGTACATC 58.010 37.037 0.00 0.00 43.81 3.06
2795 3701 3.252458 ACAATCCAACTTGCCGTTTACTC 59.748 43.478 0.00 0.00 32.27 2.59
2802 3708 2.126467 CAACAACAATCCAACTTGCCG 58.874 47.619 0.00 0.00 0.00 5.69
2835 3741 3.384789 ACCTAGCAGAATTAGTGATCGCA 59.615 43.478 9.33 0.00 0.00 5.10
2842 3748 8.422566 GGTAAACTATGACCTAGCAGAATTAGT 58.577 37.037 0.00 0.00 32.58 2.24
2870 3784 0.037046 CATCCAAACCCAAAGGCAGC 60.037 55.000 0.00 0.00 36.11 5.25
2875 3789 5.410355 AATGATCACATCCAAACCCAAAG 57.590 39.130 0.00 0.00 35.50 2.77
2907 3821 6.264970 CAGAGTAACTCCTAGGTTATACCACC 59.735 46.154 9.08 3.75 41.95 4.61
2982 3896 4.523083 AGTTAAAACTGTGAACTGGCTGA 58.477 39.130 0.00 0.00 37.98 4.26
3003 3917 5.810074 CCAAGAAAACACCAACCAGTAAAAG 59.190 40.000 0.00 0.00 0.00 2.27
3009 3923 3.005791 GGATCCAAGAAAACACCAACCAG 59.994 47.826 6.95 0.00 0.00 4.00
3018 3932 5.928264 CCAAAATGACTGGATCCAAGAAAAC 59.072 40.000 17.00 4.47 35.85 2.43
3029 3943 1.680735 GTGCACACCAAAATGACTGGA 59.319 47.619 13.17 0.00 37.40 3.86
3036 3950 1.203523 ACACGTTGTGCACACCAAAAT 59.796 42.857 21.56 0.48 36.98 1.82
3058 3972 6.633500 TTCTGTTTACTTCCTTCAATGTGG 57.367 37.500 0.00 0.00 0.00 4.17
3078 4635 0.179018 AGTTTGCCTGGTTCGCTTCT 60.179 50.000 0.00 0.00 0.00 2.85
3122 4679 8.141909 TGAATGCTAGTATGACATTACCACTAC 58.858 37.037 0.00 0.00 34.28 2.73
3170 4727 2.158900 GGGGAGTGTCATACTGTCATGG 60.159 54.545 0.00 0.00 40.53 3.66
3173 4730 2.623418 AGGGGAGTGTCATACTGTCA 57.377 50.000 0.00 0.00 40.53 3.58
3210 4767 2.494059 CGGTCTTCATTTCCTGTGTGT 58.506 47.619 0.00 0.00 0.00 3.72
3221 4778 1.880027 GTGTTTGCTTCCGGTCTTCAT 59.120 47.619 0.00 0.00 0.00 2.57
3233 4790 2.026641 AGAGTTGCACATGTGTTTGCT 58.973 42.857 26.01 18.04 39.62 3.91
3242 4799 5.453057 GGATCTGTCAGATAGAGTTGCACAT 60.453 44.000 15.44 0.00 34.53 3.21
3291 4848 3.695606 TGTCCAGGAGGCGCAGTC 61.696 66.667 10.83 4.86 33.74 3.51
3466 5028 4.346730 TGGGAAATACGACCAGTCTTCTA 58.653 43.478 0.00 0.00 0.00 2.10
3515 5159 6.000891 TGCATTTCATTTGTGTGACTACTC 57.999 37.500 0.00 0.00 0.00 2.59
3580 5227 1.909302 GACTCACAGGGGAGATGGAAA 59.091 52.381 5.39 0.00 38.30 3.13
3601 5248 1.279496 TTGCTGCACCTCATAGGACT 58.721 50.000 0.00 0.00 37.67 3.85
3628 5276 8.087750 TGTTTTCAGATTCATTATTTGGGTGAC 58.912 33.333 0.00 0.00 0.00 3.67
3636 5284 7.114811 GCACGTGTTGTTTTCAGATTCATTATT 59.885 33.333 18.38 0.00 0.00 1.40
3780 5436 5.751586 TGGAACCCTAAATCTACCATCAAC 58.248 41.667 0.00 0.00 0.00 3.18
3781 5437 6.395780 TTGGAACCCTAAATCTACCATCAA 57.604 37.500 0.00 0.00 0.00 2.57
3832 5488 7.927092 GGAGTACTACTTATTCCCATTTCTCAC 59.073 40.741 0.00 0.00 31.56 3.51
3851 5507 2.305858 AAGTGAACGGAGGGAGTACT 57.694 50.000 0.00 0.00 0.00 2.73
3852 5508 3.064931 CAAAAGTGAACGGAGGGAGTAC 58.935 50.000 0.00 0.00 0.00 2.73
3853 5509 2.701951 ACAAAAGTGAACGGAGGGAGTA 59.298 45.455 0.00 0.00 0.00 2.59
3854 5510 1.489230 ACAAAAGTGAACGGAGGGAGT 59.511 47.619 0.00 0.00 0.00 3.85
3855 5511 2.256117 ACAAAAGTGAACGGAGGGAG 57.744 50.000 0.00 0.00 0.00 4.30
3856 5512 3.135167 ACTTACAAAAGTGAACGGAGGGA 59.865 43.478 0.00 0.00 44.40 4.20
3857 5513 3.473625 ACTTACAAAAGTGAACGGAGGG 58.526 45.455 0.00 0.00 44.40 4.30
3858 5514 4.334481 ACAACTTACAAAAGTGAACGGAGG 59.666 41.667 0.00 0.00 45.37 4.30
3859 5515 5.479716 ACAACTTACAAAAGTGAACGGAG 57.520 39.130 0.00 0.00 45.37 4.63
3860 5516 5.883503 AACAACTTACAAAAGTGAACGGA 57.116 34.783 0.00 0.00 45.37 4.69
3861 5517 6.087522 TGAAACAACTTACAAAAGTGAACGG 58.912 36.000 0.00 0.00 45.37 4.44
3862 5518 7.007099 GTCTGAAACAACTTACAAAAGTGAACG 59.993 37.037 0.00 0.00 45.37 3.95
3863 5519 7.806014 TGTCTGAAACAACTTACAAAAGTGAAC 59.194 33.333 0.00 0.00 45.37 3.18
3864 5520 7.877003 TGTCTGAAACAACTTACAAAAGTGAA 58.123 30.769 0.00 0.00 45.37 3.18
3865 5521 7.441890 TGTCTGAAACAACTTACAAAAGTGA 57.558 32.000 0.00 0.00 45.37 3.41
3878 5534 6.039616 GCCTATTTTGTGTTGTCTGAAACAA 58.960 36.000 6.88 0.00 45.60 2.83
3879 5535 5.359576 AGCCTATTTTGTGTTGTCTGAAACA 59.640 36.000 2.66 2.66 37.71 2.83
3880 5536 5.687285 CAGCCTATTTTGTGTTGTCTGAAAC 59.313 40.000 0.00 0.00 0.00 2.78
3881 5537 5.359576 ACAGCCTATTTTGTGTTGTCTGAAA 59.640 36.000 0.00 0.00 0.00 2.69
3882 5538 4.887071 ACAGCCTATTTTGTGTTGTCTGAA 59.113 37.500 0.00 0.00 0.00 3.02
3883 5539 4.460263 ACAGCCTATTTTGTGTTGTCTGA 58.540 39.130 0.00 0.00 0.00 3.27
3884 5540 4.836125 ACAGCCTATTTTGTGTTGTCTG 57.164 40.909 0.00 0.00 0.00 3.51
3885 5541 5.852282 AAACAGCCTATTTTGTGTTGTCT 57.148 34.783 0.00 0.00 33.45 3.41
3886 5542 5.276820 GCAAAACAGCCTATTTTGTGTTGTC 60.277 40.000 9.72 2.95 45.03 3.18
3887 5543 4.570369 GCAAAACAGCCTATTTTGTGTTGT 59.430 37.500 9.72 0.00 45.03 3.32
3888 5544 4.569966 TGCAAAACAGCCTATTTTGTGTTG 59.430 37.500 9.72 8.98 45.03 3.33
3889 5545 4.570369 GTGCAAAACAGCCTATTTTGTGTT 59.430 37.500 9.72 0.00 45.03 3.32
3890 5546 4.119136 GTGCAAAACAGCCTATTTTGTGT 58.881 39.130 9.72 0.00 45.03 3.72
3891 5547 4.118410 TGTGCAAAACAGCCTATTTTGTG 58.882 39.130 9.72 0.00 45.03 3.33
3892 5548 4.399004 TGTGCAAAACAGCCTATTTTGT 57.601 36.364 9.72 0.00 45.03 2.83
3893 5549 5.236911 ACAATGTGCAAAACAGCCTATTTTG 59.763 36.000 3.83 3.83 45.68 2.44
3894 5550 5.367302 ACAATGTGCAAAACAGCCTATTTT 58.633 33.333 0.00 0.00 43.64 1.82
3895 5551 4.959723 ACAATGTGCAAAACAGCCTATTT 58.040 34.783 0.00 0.00 43.64 1.40
3896 5552 4.281688 AGACAATGTGCAAAACAGCCTATT 59.718 37.500 0.00 0.00 43.64 1.73
3897 5553 3.828451 AGACAATGTGCAAAACAGCCTAT 59.172 39.130 0.00 0.00 43.64 2.57
3898 5554 3.221771 AGACAATGTGCAAAACAGCCTA 58.778 40.909 0.00 0.00 43.64 3.93
3899 5555 2.034124 AGACAATGTGCAAAACAGCCT 58.966 42.857 0.00 0.00 43.64 4.58
3900 5556 2.514205 AGACAATGTGCAAAACAGCC 57.486 45.000 0.00 0.00 43.64 4.85
3901 5557 5.964887 TTTTAGACAATGTGCAAAACAGC 57.035 34.783 0.00 0.00 43.64 4.40
3902 5558 7.436080 AGACATTTTAGACAATGTGCAAAACAG 59.564 33.333 3.82 0.00 45.55 3.16
3903 5559 7.264221 AGACATTTTAGACAATGTGCAAAACA 58.736 30.769 3.82 0.00 45.55 2.83
3904 5560 7.698836 AGACATTTTAGACAATGTGCAAAAC 57.301 32.000 3.82 0.00 45.55 2.43
3905 5561 7.978414 TGAAGACATTTTAGACAATGTGCAAAA 59.022 29.630 3.82 0.00 45.55 2.44
3906 5562 7.487484 TGAAGACATTTTAGACAATGTGCAAA 58.513 30.769 3.82 0.00 45.55 3.68
3907 5563 7.036996 TGAAGACATTTTAGACAATGTGCAA 57.963 32.000 3.82 0.00 45.55 4.08
3908 5564 6.631971 TGAAGACATTTTAGACAATGTGCA 57.368 33.333 3.82 0.00 45.55 4.57
3909 5565 6.088616 GCTTGAAGACATTTTAGACAATGTGC 59.911 38.462 3.82 0.00 45.55 4.57
3910 5566 7.365741 AGCTTGAAGACATTTTAGACAATGTG 58.634 34.615 3.82 0.00 45.55 3.21
3912 5568 7.814642 AGAGCTTGAAGACATTTTAGACAATG 58.185 34.615 0.00 0.00 39.67 2.82
3913 5569 7.992754 AGAGCTTGAAGACATTTTAGACAAT 57.007 32.000 0.00 0.00 0.00 2.71
3914 5570 7.807977 AAGAGCTTGAAGACATTTTAGACAA 57.192 32.000 0.00 0.00 0.00 3.18
3922 5578 9.507329 TCACTTTTATAAGAGCTTGAAGACATT 57.493 29.630 0.00 0.00 35.30 2.71
3923 5579 9.507329 TTCACTTTTATAAGAGCTTGAAGACAT 57.493 29.630 0.00 0.00 35.30 3.06
3924 5580 8.774586 GTTCACTTTTATAAGAGCTTGAAGACA 58.225 33.333 8.48 0.00 35.30 3.41
3925 5581 7.952637 CGTTCACTTTTATAAGAGCTTGAAGAC 59.047 37.037 8.48 1.43 35.30 3.01
3926 5582 7.117812 CCGTTCACTTTTATAAGAGCTTGAAGA 59.882 37.037 8.48 0.00 35.30 2.87
3927 5583 7.117812 TCCGTTCACTTTTATAAGAGCTTGAAG 59.882 37.037 8.48 0.00 35.30 3.02
3928 5584 6.932400 TCCGTTCACTTTTATAAGAGCTTGAA 59.068 34.615 3.00 4.43 35.30 2.69
3929 5585 6.460781 TCCGTTCACTTTTATAAGAGCTTGA 58.539 36.000 3.00 0.00 35.30 3.02
3930 5586 6.183360 CCTCCGTTCACTTTTATAAGAGCTTG 60.183 42.308 3.00 0.00 35.30 4.01
3931 5587 5.875359 CCTCCGTTCACTTTTATAAGAGCTT 59.125 40.000 3.00 0.00 35.30 3.74
3932 5588 5.420409 CCTCCGTTCACTTTTATAAGAGCT 58.580 41.667 3.00 0.00 35.30 4.09
3933 5589 4.571176 CCCTCCGTTCACTTTTATAAGAGC 59.429 45.833 3.00 0.00 35.30 4.09
3934 5590 5.974108 TCCCTCCGTTCACTTTTATAAGAG 58.026 41.667 1.56 1.56 35.30 2.85
3935 5591 5.482878 ACTCCCTCCGTTCACTTTTATAAGA 59.517 40.000 0.00 0.00 35.30 2.10
3936 5592 5.731591 ACTCCCTCCGTTCACTTTTATAAG 58.268 41.667 0.00 0.00 37.40 1.73
3937 5593 5.750352 ACTCCCTCCGTTCACTTTTATAA 57.250 39.130 0.00 0.00 0.00 0.98
3938 5594 6.855763 TTACTCCCTCCGTTCACTTTTATA 57.144 37.500 0.00 0.00 0.00 0.98
3939 5595 5.750352 TTACTCCCTCCGTTCACTTTTAT 57.250 39.130 0.00 0.00 0.00 1.40
3940 5596 5.750352 ATTACTCCCTCCGTTCACTTTTA 57.250 39.130 0.00 0.00 0.00 1.52
3941 5597 4.635699 ATTACTCCCTCCGTTCACTTTT 57.364 40.909 0.00 0.00 0.00 2.27
3942 5598 4.565028 GGAATTACTCCCTCCGTTCACTTT 60.565 45.833 0.00 0.00 38.44 2.66
3943 5599 3.055312 GGAATTACTCCCTCCGTTCACTT 60.055 47.826 0.00 0.00 38.44 3.16
3944 5600 2.500504 GGAATTACTCCCTCCGTTCACT 59.499 50.000 0.00 0.00 38.44 3.41
3945 5601 2.500504 AGGAATTACTCCCTCCGTTCAC 59.499 50.000 0.00 0.00 46.81 3.18
3946 5602 2.829023 AGGAATTACTCCCTCCGTTCA 58.171 47.619 0.00 0.00 46.81 3.18
3947 5603 3.908643 AAGGAATTACTCCCTCCGTTC 57.091 47.619 0.00 0.00 46.81 3.95
3948 5604 3.872630 GCAAAGGAATTACTCCCTCCGTT 60.873 47.826 0.00 0.00 46.81 4.44
3949 5605 2.355818 GCAAAGGAATTACTCCCTCCGT 60.356 50.000 0.00 0.00 46.81 4.69
3950 5606 2.289565 GCAAAGGAATTACTCCCTCCG 58.710 52.381 0.00 0.00 46.81 4.63
3951 5607 3.366052 TGCAAAGGAATTACTCCCTCC 57.634 47.619 0.00 0.00 46.81 4.30
3952 5608 4.380973 GCTTTGCAAAGGAATTACTCCCTC 60.381 45.833 34.02 13.54 46.81 4.30
3953 5609 3.511540 GCTTTGCAAAGGAATTACTCCCT 59.488 43.478 34.02 0.00 46.81 4.20
3954 5610 3.258123 TGCTTTGCAAAGGAATTACTCCC 59.742 43.478 34.02 17.27 39.54 4.30
3955 5611 4.237724 GTGCTTTGCAAAGGAATTACTCC 58.762 43.478 34.02 17.74 42.14 3.85
3956 5612 4.237724 GGTGCTTTGCAAAGGAATTACTC 58.762 43.478 34.02 20.77 41.47 2.59
4032 5688 9.953565 ATACCAGTAAAAGCATTAGACTACAAA 57.046 29.630 0.00 0.00 0.00 2.83
4086 5742 3.435327 TGAGAATAATTGCACGGACACAC 59.565 43.478 0.00 0.00 0.00 3.82
4096 5752 7.320443 TGGTATGTCACTTGAGAATAATTGC 57.680 36.000 0.00 0.00 0.00 3.56
4116 5772 3.643320 CAGAGGAGGTCTATTGCATGGTA 59.357 47.826 0.00 0.00 32.51 3.25
4118 5774 2.809665 GCAGAGGAGGTCTATTGCATGG 60.810 54.545 0.00 0.00 36.64 3.66
4236 5897 4.331168 CACTCTCCGAAATCCAATCAGAAC 59.669 45.833 0.00 0.00 0.00 3.01
4244 5905 0.250234 CCAGCACTCTCCGAAATCCA 59.750 55.000 0.00 0.00 0.00 3.41
4269 5938 3.070476 TGTTGCTGACAATGGCATCTA 57.930 42.857 0.00 0.00 38.27 1.98
4345 6064 3.423539 TTCTTGTCCTCCCAACAGATG 57.576 47.619 0.00 0.00 0.00 2.90
4346 6065 3.138283 TGTTTCTTGTCCTCCCAACAGAT 59.862 43.478 0.00 0.00 0.00 2.90
4347 6066 2.507886 TGTTTCTTGTCCTCCCAACAGA 59.492 45.455 0.00 0.00 0.00 3.41
4348 6067 2.930950 TGTTTCTTGTCCTCCCAACAG 58.069 47.619 0.00 0.00 0.00 3.16
4349 6068 3.374042 TTGTTTCTTGTCCTCCCAACA 57.626 42.857 0.00 0.00 0.00 3.33
4350 6069 5.105756 CCATATTGTTTCTTGTCCTCCCAAC 60.106 44.000 0.00 0.00 0.00 3.77
4351 6070 5.016173 CCATATTGTTTCTTGTCCTCCCAA 58.984 41.667 0.00 0.00 0.00 4.12
4352 6071 4.044065 ACCATATTGTTTCTTGTCCTCCCA 59.956 41.667 0.00 0.00 0.00 4.37
4353 6072 4.600062 ACCATATTGTTTCTTGTCCTCCC 58.400 43.478 0.00 0.00 0.00 4.30
4354 6073 6.590234 AAACCATATTGTTTCTTGTCCTCC 57.410 37.500 0.00 0.00 33.24 4.30
4364 6083 4.220602 GCCCTGTCTGAAACCATATTGTTT 59.779 41.667 4.67 4.67 40.99 2.83
4365 6084 3.763897 GCCCTGTCTGAAACCATATTGTT 59.236 43.478 0.00 0.00 0.00 2.83
4366 6085 3.010584 AGCCCTGTCTGAAACCATATTGT 59.989 43.478 0.00 0.00 0.00 2.71
4367 6086 3.379372 CAGCCCTGTCTGAAACCATATTG 59.621 47.826 0.00 0.00 36.19 1.90
4368 6087 3.624777 CAGCCCTGTCTGAAACCATATT 58.375 45.455 0.00 0.00 36.19 1.28
4369 6088 2.684927 GCAGCCCTGTCTGAAACCATAT 60.685 50.000 0.00 0.00 36.19 1.78
4370 6089 1.340017 GCAGCCCTGTCTGAAACCATA 60.340 52.381 0.00 0.00 36.19 2.74
4371 6090 0.610232 GCAGCCCTGTCTGAAACCAT 60.610 55.000 0.00 0.00 36.19 3.55
4372 6091 1.228245 GCAGCCCTGTCTGAAACCA 60.228 57.895 0.00 0.00 36.19 3.67
4373 6092 1.228245 TGCAGCCCTGTCTGAAACC 60.228 57.895 0.00 0.00 36.19 3.27
4374 6093 1.845809 CGTGCAGCCCTGTCTGAAAC 61.846 60.000 0.00 0.00 36.19 2.78
4422 6141 3.548770 TGATTTGGCTCCAGATCATGTC 58.451 45.455 15.60 0.00 40.90 3.06
4443 6162 4.040706 TCTTTCAGCATTTCAATTTGCCCT 59.959 37.500 0.00 0.00 39.72 5.19
4458 6177 8.850452 CGACCAAATAGTAAATTTTCTTTCAGC 58.150 33.333 2.43 0.00 0.00 4.26
4541 6260 1.272212 CAAATTCAGGAAACCACCGGG 59.728 52.381 6.32 0.00 41.29 5.73
4546 6265 3.708631 TGGCTTTCAAATTCAGGAAACCA 59.291 39.130 12.23 12.23 34.68 3.67
4547 6266 4.335400 TGGCTTTCAAATTCAGGAAACC 57.665 40.909 0.00 0.00 0.00 3.27
4565 6284 6.096846 AGGATGAAATGTATTGTACCTTTGGC 59.903 38.462 0.00 0.00 28.75 4.52
4619 6338 3.072944 GCATGGAAGCACTCCTCATATC 58.927 50.000 6.44 0.00 45.64 1.63
4678 6404 3.073062 ACTTGGGCATCAGAACTTACTGT 59.927 43.478 0.00 0.00 38.79 3.55
4723 6449 4.816984 GAGGAGAGGCCGGTCGGA 62.817 72.222 14.15 0.00 43.43 4.55
4898 6632 6.231951 CACTCAATCTATCAATCTGCTCCAT 58.768 40.000 0.00 0.00 0.00 3.41
4911 6645 2.025155 ACGACGAGCCACTCAATCTAT 58.975 47.619 0.00 0.00 0.00 1.98
4943 6677 5.104485 ACAGAGGGGGTACTTAGCAATAAAG 60.104 44.000 0.00 0.00 0.00 1.85
4951 6685 3.393426 TGGTACAGAGGGGGTACTTAG 57.607 52.381 0.00 0.00 40.67 2.18
5002 6736 5.437060 ACACCAGTTTAACAGAACACATCT 58.563 37.500 0.00 0.00 39.68 2.90
5003 6737 5.277828 GGACACCAGTTTAACAGAACACATC 60.278 44.000 0.00 0.00 31.94 3.06
5004 6738 4.578928 GGACACCAGTTTAACAGAACACAT 59.421 41.667 0.00 0.00 31.94 3.21
5005 6739 3.942748 GGACACCAGTTTAACAGAACACA 59.057 43.478 0.00 0.00 31.94 3.72
5006 6740 4.035208 CAGGACACCAGTTTAACAGAACAC 59.965 45.833 0.00 0.00 31.94 3.32
5007 6741 4.196193 CAGGACACCAGTTTAACAGAACA 58.804 43.478 0.00 0.00 31.94 3.18
5008 6742 3.564225 CCAGGACACCAGTTTAACAGAAC 59.436 47.826 0.00 0.00 0.00 3.01
5009 6743 3.434453 CCCAGGACACCAGTTTAACAGAA 60.434 47.826 0.00 0.00 0.00 3.02
5010 6744 2.105821 CCCAGGACACCAGTTTAACAGA 59.894 50.000 0.00 0.00 0.00 3.41
5011 6745 2.504367 CCCAGGACACCAGTTTAACAG 58.496 52.381 0.00 0.00 0.00 3.16
5012 6746 1.477923 GCCCAGGACACCAGTTTAACA 60.478 52.381 0.00 0.00 0.00 2.41
5013 6747 1.244816 GCCCAGGACACCAGTTTAAC 58.755 55.000 0.00 0.00 0.00 2.01
5014 6748 0.847373 TGCCCAGGACACCAGTTTAA 59.153 50.000 0.00 0.00 0.00 1.52
5015 6749 1.072266 ATGCCCAGGACACCAGTTTA 58.928 50.000 0.00 0.00 0.00 2.01
5016 6750 1.072266 TATGCCCAGGACACCAGTTT 58.928 50.000 0.00 0.00 0.00 2.66
5017 6751 1.298953 ATATGCCCAGGACACCAGTT 58.701 50.000 0.00 0.00 0.00 3.16
5018 6752 2.172717 GTTATATGCCCAGGACACCAGT 59.827 50.000 0.00 0.00 0.00 4.00
5019 6753 2.487265 GGTTATATGCCCAGGACACCAG 60.487 54.545 0.00 0.00 0.00 4.00
5020 6754 1.493022 GGTTATATGCCCAGGACACCA 59.507 52.381 0.00 0.00 0.00 4.17
5021 6755 1.493022 TGGTTATATGCCCAGGACACC 59.507 52.381 0.00 0.00 0.00 4.16
5022 6756 2.851195 CTGGTTATATGCCCAGGACAC 58.149 52.381 12.49 0.00 43.74 3.67
5023 6757 1.142870 GCTGGTTATATGCCCAGGACA 59.857 52.381 18.80 0.00 46.83 4.02
5024 6758 1.142870 TGCTGGTTATATGCCCAGGAC 59.857 52.381 18.80 8.16 46.83 3.85
5025 6759 1.142870 GTGCTGGTTATATGCCCAGGA 59.857 52.381 18.80 15.21 46.83 3.86
5026 6760 1.133823 TGTGCTGGTTATATGCCCAGG 60.134 52.381 18.80 6.27 46.83 4.45
5028 6762 1.563879 AGTGTGCTGGTTATATGCCCA 59.436 47.619 0.00 0.00 0.00 5.36
5029 6763 1.949525 CAGTGTGCTGGTTATATGCCC 59.050 52.381 0.00 0.00 39.01 5.36
5040 6774 4.574828 AGTTTGTACTAAACCAGTGTGCTG 59.425 41.667 13.72 0.00 38.24 4.41
5041 6775 4.574828 CAGTTTGTACTAAACCAGTGTGCT 59.425 41.667 13.72 0.00 38.24 4.40
5042 6776 4.334481 ACAGTTTGTACTAAACCAGTGTGC 59.666 41.667 13.72 0.00 38.24 4.57
5043 6777 5.220777 CCACAGTTTGTACTAAACCAGTGTG 60.221 44.000 23.24 21.73 39.38 3.82
5044 6778 4.879545 CCACAGTTTGTACTAAACCAGTGT 59.120 41.667 23.24 16.43 38.24 3.55
5045 6779 4.879545 ACCACAGTTTGTACTAAACCAGTG 59.120 41.667 21.15 21.15 38.24 3.66
5046 6780 5.106876 ACCACAGTTTGTACTAAACCAGT 57.893 39.130 13.72 11.20 41.62 4.00
5047 6781 6.518493 TCTACCACAGTTTGTACTAAACCAG 58.482 40.000 13.72 10.77 31.96 4.00
5048 6782 6.482898 TCTACCACAGTTTGTACTAAACCA 57.517 37.500 13.72 0.00 31.96 3.67
5049 6783 6.370718 CCATCTACCACAGTTTGTACTAAACC 59.629 42.308 13.72 0.00 31.96 3.27
5050 6784 6.128363 GCCATCTACCACAGTTTGTACTAAAC 60.128 42.308 10.91 10.91 31.96 2.01
5051 6785 5.935789 GCCATCTACCACAGTTTGTACTAAA 59.064 40.000 0.00 0.00 31.96 1.85
5052 6786 5.484715 GCCATCTACCACAGTTTGTACTAA 58.515 41.667 0.00 0.00 31.96 2.24
5053 6787 4.081309 GGCCATCTACCACAGTTTGTACTA 60.081 45.833 0.00 0.00 31.96 1.82
5054 6788 3.307480 GGCCATCTACCACAGTTTGTACT 60.307 47.826 0.00 0.00 34.00 2.73
5055 6789 3.007635 GGCCATCTACCACAGTTTGTAC 58.992 50.000 0.00 0.00 0.00 2.90
5056 6790 2.640332 TGGCCATCTACCACAGTTTGTA 59.360 45.455 0.00 0.00 30.29 2.41
5057 6791 1.423541 TGGCCATCTACCACAGTTTGT 59.576 47.619 0.00 0.00 30.29 2.83
5058 6792 2.198827 TGGCCATCTACCACAGTTTG 57.801 50.000 0.00 0.00 30.29 2.93
5059 6793 2.969821 TTGGCCATCTACCACAGTTT 57.030 45.000 6.09 0.00 36.76 2.66
5060 6794 2.357154 GGATTGGCCATCTACCACAGTT 60.357 50.000 6.09 0.00 36.76 3.16
5061 6795 1.212935 GGATTGGCCATCTACCACAGT 59.787 52.381 6.09 0.00 36.76 3.55
5062 6796 1.212688 TGGATTGGCCATCTACCACAG 59.787 52.381 6.09 0.00 43.33 3.66
5063 6797 1.294041 TGGATTGGCCATCTACCACA 58.706 50.000 6.09 0.00 43.33 4.17
5072 6806 1.685224 GTGAGGTCTGGATTGGCCA 59.315 57.895 0.00 0.00 46.96 5.36
5073 6807 1.450312 CGTGAGGTCTGGATTGGCC 60.450 63.158 0.00 0.00 37.10 5.36
5074 6808 0.179000 ATCGTGAGGTCTGGATTGGC 59.821 55.000 0.00 0.00 0.00 4.52
5075 6809 1.536922 CGATCGTGAGGTCTGGATTGG 60.537 57.143 7.03 0.00 39.71 3.16
5076 6810 1.845266 CGATCGTGAGGTCTGGATTG 58.155 55.000 7.03 0.00 39.71 2.67
5077 6811 0.103208 GCGATCGTGAGGTCTGGATT 59.897 55.000 17.81 0.00 39.71 3.01
5078 6812 1.736586 GCGATCGTGAGGTCTGGAT 59.263 57.895 17.81 0.00 39.71 3.41
5079 6813 2.415608 GGCGATCGTGAGGTCTGGA 61.416 63.158 17.81 0.00 39.71 3.86
5080 6814 2.021068 ATGGCGATCGTGAGGTCTGG 62.021 60.000 17.81 0.00 39.71 3.86
5081 6815 0.596083 GATGGCGATCGTGAGGTCTG 60.596 60.000 17.81 0.00 39.71 3.51
5082 6816 1.736586 GATGGCGATCGTGAGGTCT 59.263 57.895 17.81 0.00 39.71 3.85
5083 6817 1.300233 GGATGGCGATCGTGAGGTC 60.300 63.158 17.81 8.07 38.06 3.85
5084 6818 2.797278 GGGATGGCGATCGTGAGGT 61.797 63.158 17.81 0.00 0.00 3.85
5085 6819 2.029666 GGGATGGCGATCGTGAGG 59.970 66.667 17.81 0.00 0.00 3.86
5086 6820 1.179174 TAGGGGATGGCGATCGTGAG 61.179 60.000 17.81 0.00 0.00 3.51
5087 6821 0.757561 TTAGGGGATGGCGATCGTGA 60.758 55.000 17.81 3.66 0.00 4.35
5088 6822 0.600255 GTTAGGGGATGGCGATCGTG 60.600 60.000 17.81 0.00 0.00 4.35
5089 6823 1.046472 TGTTAGGGGATGGCGATCGT 61.046 55.000 17.81 0.00 0.00 3.73
5090 6824 0.319900 CTGTTAGGGGATGGCGATCG 60.320 60.000 11.69 11.69 0.00 3.69
5091 6825 1.001406 CTCTGTTAGGGGATGGCGATC 59.999 57.143 0.00 0.00 0.00 3.69
5092 6826 1.051812 CTCTGTTAGGGGATGGCGAT 58.948 55.000 0.00 0.00 0.00 4.58
5093 6827 1.686325 GCTCTGTTAGGGGATGGCGA 61.686 60.000 0.00 0.00 0.00 5.54
5094 6828 1.227674 GCTCTGTTAGGGGATGGCG 60.228 63.158 0.00 0.00 0.00 5.69
5095 6829 1.227674 CGCTCTGTTAGGGGATGGC 60.228 63.158 0.00 0.00 34.56 4.40
5096 6830 1.227674 GCGCTCTGTTAGGGGATGG 60.228 63.158 0.00 0.00 38.57 3.51
5097 6831 1.227674 GGCGCTCTGTTAGGGGATG 60.228 63.158 7.64 0.00 38.57 3.51
5098 6832 1.689233 TGGCGCTCTGTTAGGGGAT 60.689 57.895 7.64 0.00 38.57 3.85
5099 6833 2.284331 TGGCGCTCTGTTAGGGGA 60.284 61.111 7.64 0.00 38.57 4.81
5100 6834 2.125106 GTGGCGCTCTGTTAGGGG 60.125 66.667 7.64 0.00 38.57 4.79
5101 6835 2.509336 CGTGGCGCTCTGTTAGGG 60.509 66.667 7.64 0.00 41.05 3.53
5113 6847 3.854459 GAACTAGCTGCGCGTGGC 61.854 66.667 8.43 12.76 43.96 5.01
5114 6848 1.811266 ATGAACTAGCTGCGCGTGG 60.811 57.895 8.43 1.49 0.00 4.94
5115 6849 1.078201 TCATGAACTAGCTGCGCGTG 61.078 55.000 8.43 1.88 0.00 5.34
5116 6850 0.389817 TTCATGAACTAGCTGCGCGT 60.390 50.000 8.43 0.00 0.00 6.01
5117 6851 0.025513 GTTCATGAACTAGCTGCGCG 59.974 55.000 27.66 0.00 38.25 6.86
5118 6852 3.885777 GTTCATGAACTAGCTGCGC 57.114 52.632 27.66 0.00 38.25 6.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.