Multiple sequence alignment - TraesCS1B01G176500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G176500 chr1B 100.000 3684 0 0 1 3684 317842973 317846656 0.000000e+00 6804.0
1 TraesCS1B01G176500 chr1B 86.564 1042 113 8 1069 2092 643271036 643270004 0.000000e+00 1123.0
2 TraesCS1B01G176500 chr1D 94.423 3066 113 29 665 3684 221889116 221886063 0.000000e+00 4662.0
3 TraesCS1B01G176500 chr1A 94.622 2250 102 10 929 3170 287544201 287541963 0.000000e+00 3467.0
4 TraesCS1B01G176500 chr1A 88.078 562 47 12 1743 2297 287533968 287533420 0.000000e+00 649.0
5 TraesCS1B01G176500 chr1A 90.832 469 21 8 2700 3165 287316959 287316510 3.150000e-170 608.0
6 TraesCS1B01G176500 chr1A 95.114 307 14 1 3260 3565 287316048 287315742 1.990000e-132 483.0
7 TraesCS1B01G176500 chr1A 95.122 123 6 0 3562 3684 287315226 287315104 1.040000e-45 195.0
8 TraesCS1B01G176500 chr1A 91.892 111 8 1 658 767 287544769 287544659 1.770000e-33 154.0
9 TraesCS1B01G176500 chr1A 92.857 84 6 0 171 254 513118103 513118186 5.000000e-24 122.0
10 TraesCS1B01G176500 chr6D 91.111 90 7 1 166 254 377541636 377541725 1.800000e-23 121.0
11 TraesCS1B01G176500 chr7D 89.535 86 7 1 169 254 552186236 552186319 1.400000e-19 108.0
12 TraesCS1B01G176500 chr7A 89.286 84 9 0 171 254 709389668 709389751 5.030000e-19 106.0
13 TraesCS1B01G176500 chr7A 91.892 37 3 0 168 204 102095582 102095618 7.000000e-03 52.8
14 TraesCS1B01G176500 chr2D 95.238 42 2 0 171 212 484901051 484901092 2.370000e-07 67.6
15 TraesCS1B01G176500 chr6B 91.111 45 4 0 171 215 507666616 507666660 1.100000e-05 62.1
16 TraesCS1B01G176500 chr4A 85.246 61 8 1 195 254 742018784 742018844 1.100000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G176500 chr1B 317842973 317846656 3683 False 6804.000000 6804 100.000000 1 3684 1 chr1B.!!$F1 3683
1 TraesCS1B01G176500 chr1B 643270004 643271036 1032 True 1123.000000 1123 86.564000 1069 2092 1 chr1B.!!$R1 1023
2 TraesCS1B01G176500 chr1D 221886063 221889116 3053 True 4662.000000 4662 94.423000 665 3684 1 chr1D.!!$R1 3019
3 TraesCS1B01G176500 chr1A 287541963 287544769 2806 True 1810.500000 3467 93.257000 658 3170 2 chr1A.!!$R3 2512
4 TraesCS1B01G176500 chr1A 287533420 287533968 548 True 649.000000 649 88.078000 1743 2297 1 chr1A.!!$R1 554
5 TraesCS1B01G176500 chr1A 287315104 287316959 1855 True 428.666667 608 93.689333 2700 3684 3 chr1A.!!$R2 984

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
320 321 0.037326 TTGGCCTGCTGTTCTACTCG 60.037 55.0 3.32 0.00 0.00 4.18 F
646 647 0.250989 TAGAAACACCTTTGGCCGGG 60.251 55.0 2.18 2.55 0.00 5.73 F
1650 1948 0.042131 ATGTCTCCAAGGGGTCGGTA 59.958 55.0 0.00 0.00 34.93 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1650 1948 1.641677 GTGAACGAAGCAAGCACGT 59.358 52.632 10.40 10.4 41.97 4.49 R
1964 2262 1.856629 AGGCATCATCAAACAAGGGG 58.143 50.000 0.00 0.0 0.00 4.79 R
2960 3286 1.276705 TCTACCAAACTGCGCCATGTA 59.723 47.619 4.18 0.0 0.00 2.29 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 0.606604 TCAGAGTTTACGGACCAGCC 59.393 55.000 0.00 0.00 0.00 4.85
20 21 0.608640 CAGAGTTTACGGACCAGCCT 59.391 55.000 0.00 0.00 0.00 4.58
21 22 1.002087 CAGAGTTTACGGACCAGCCTT 59.998 52.381 0.00 0.00 0.00 4.35
22 23 1.275573 AGAGTTTACGGACCAGCCTTC 59.724 52.381 0.00 0.00 0.00 3.46
23 24 1.001633 GAGTTTACGGACCAGCCTTCA 59.998 52.381 0.00 0.00 0.00 3.02
24 25 1.418637 AGTTTACGGACCAGCCTTCAA 59.581 47.619 0.00 0.00 0.00 2.69
25 26 2.158726 AGTTTACGGACCAGCCTTCAAA 60.159 45.455 0.00 0.00 0.00 2.69
26 27 2.817844 GTTTACGGACCAGCCTTCAAAT 59.182 45.455 0.00 0.00 0.00 2.32
27 28 2.107950 TACGGACCAGCCTTCAAATG 57.892 50.000 0.00 0.00 0.00 2.32
28 29 1.244019 ACGGACCAGCCTTCAAATGC 61.244 55.000 0.00 0.00 0.00 3.56
29 30 1.243342 CGGACCAGCCTTCAAATGCA 61.243 55.000 0.00 0.00 0.00 3.96
30 31 1.188863 GGACCAGCCTTCAAATGCAT 58.811 50.000 0.00 0.00 0.00 3.96
31 32 2.378038 GGACCAGCCTTCAAATGCATA 58.622 47.619 0.00 0.00 0.00 3.14
32 33 2.961062 GGACCAGCCTTCAAATGCATAT 59.039 45.455 0.00 0.00 0.00 1.78
33 34 3.243636 GGACCAGCCTTCAAATGCATATG 60.244 47.826 0.00 0.00 0.00 1.78
34 35 3.368248 ACCAGCCTTCAAATGCATATGT 58.632 40.909 0.00 0.00 0.00 2.29
35 36 4.535781 ACCAGCCTTCAAATGCATATGTA 58.464 39.130 0.00 0.00 0.00 2.29
36 37 5.142639 ACCAGCCTTCAAATGCATATGTAT 58.857 37.500 0.00 1.99 0.00 2.29
37 38 5.599656 ACCAGCCTTCAAATGCATATGTATT 59.400 36.000 12.69 12.69 31.67 1.89
38 39 6.098695 ACCAGCCTTCAAATGCATATGTATTT 59.901 34.615 21.73 21.73 40.19 1.40
39 40 6.987992 CCAGCCTTCAAATGCATATGTATTTT 59.012 34.615 24.01 10.09 38.07 1.82
40 41 7.496591 CCAGCCTTCAAATGCATATGTATTTTT 59.503 33.333 24.01 7.62 38.07 1.94
82 83 7.984422 CATATGTATGCTTTTATGGAGACCA 57.016 36.000 0.00 0.00 38.19 4.02
83 84 7.810658 CATATGTATGCTTTTATGGAGACCAC 58.189 38.462 0.00 0.00 35.80 4.16
84 85 5.172687 TGTATGCTTTTATGGAGACCACA 57.827 39.130 0.00 0.00 35.80 4.17
85 86 5.754782 TGTATGCTTTTATGGAGACCACAT 58.245 37.500 0.00 0.00 35.80 3.21
86 87 6.894682 TGTATGCTTTTATGGAGACCACATA 58.105 36.000 0.00 0.00 35.80 2.29
87 88 7.517320 TGTATGCTTTTATGGAGACCACATAT 58.483 34.615 0.00 0.00 35.80 1.78
88 89 6.889301 ATGCTTTTATGGAGACCACATATG 57.111 37.500 0.00 0.00 35.80 1.78
102 103 4.962155 CCACATATGGGGACTCTTAACTC 58.038 47.826 20.16 0.00 42.67 3.01
103 104 4.656112 CCACATATGGGGACTCTTAACTCT 59.344 45.833 20.16 0.00 42.67 3.24
104 105 5.839063 CCACATATGGGGACTCTTAACTCTA 59.161 44.000 20.16 0.00 42.67 2.43
105 106 6.239345 CCACATATGGGGACTCTTAACTCTAC 60.239 46.154 20.16 0.00 42.67 2.59
106 107 6.551601 CACATATGGGGACTCTTAACTCTACT 59.448 42.308 7.80 0.00 0.00 2.57
107 108 7.724506 CACATATGGGGACTCTTAACTCTACTA 59.275 40.741 7.80 0.00 0.00 1.82
108 109 7.945664 ACATATGGGGACTCTTAACTCTACTAG 59.054 40.741 7.80 0.00 0.00 2.57
109 110 6.593759 ATGGGGACTCTTAACTCTACTAGA 57.406 41.667 0.00 0.00 0.00 2.43
110 111 6.398655 TGGGGACTCTTAACTCTACTAGAA 57.601 41.667 0.00 0.00 0.00 2.10
111 112 6.982899 TGGGGACTCTTAACTCTACTAGAAT 58.017 40.000 0.00 0.00 0.00 2.40
112 113 7.420029 TGGGGACTCTTAACTCTACTAGAATT 58.580 38.462 0.00 0.00 0.00 2.17
113 114 7.342284 TGGGGACTCTTAACTCTACTAGAATTG 59.658 40.741 0.00 0.00 0.00 2.32
114 115 7.201929 GGGGACTCTTAACTCTACTAGAATTGG 60.202 44.444 0.00 0.00 0.00 3.16
115 116 7.201929 GGGACTCTTAACTCTACTAGAATTGGG 60.202 44.444 0.00 0.00 0.00 4.12
116 117 7.560626 GGACTCTTAACTCTACTAGAATTGGGA 59.439 40.741 0.00 0.00 0.00 4.37
117 118 9.138596 GACTCTTAACTCTACTAGAATTGGGAT 57.861 37.037 0.00 0.00 0.00 3.85
121 122 9.699703 CTTAACTCTACTAGAATTGGGATAAGC 57.300 37.037 0.00 0.00 0.00 3.09
122 123 7.676683 AACTCTACTAGAATTGGGATAAGCA 57.323 36.000 0.00 0.00 0.00 3.91
123 124 7.863901 ACTCTACTAGAATTGGGATAAGCAT 57.136 36.000 0.00 0.00 0.00 3.79
124 125 7.902087 ACTCTACTAGAATTGGGATAAGCATC 58.098 38.462 0.00 0.00 0.00 3.91
125 126 7.510685 ACTCTACTAGAATTGGGATAAGCATCA 59.489 37.037 0.00 0.00 32.32 3.07
126 127 8.441311 TCTACTAGAATTGGGATAAGCATCAT 57.559 34.615 0.00 0.00 32.32 2.45
127 128 8.535335 TCTACTAGAATTGGGATAAGCATCATC 58.465 37.037 0.00 0.00 32.32 2.92
128 129 6.169094 ACTAGAATTGGGATAAGCATCATCG 58.831 40.000 0.00 0.00 32.32 3.84
129 130 4.330250 AGAATTGGGATAAGCATCATCGG 58.670 43.478 0.00 0.00 32.32 4.18
130 131 1.896220 TTGGGATAAGCATCATCGGC 58.104 50.000 0.00 0.00 32.32 5.54
131 132 1.059098 TGGGATAAGCATCATCGGCT 58.941 50.000 0.00 0.00 45.15 5.52
132 133 1.002430 TGGGATAAGCATCATCGGCTC 59.998 52.381 0.00 0.00 41.66 4.70
133 134 1.277557 GGGATAAGCATCATCGGCTCT 59.722 52.381 0.00 0.00 41.66 4.09
134 135 2.615869 GGATAAGCATCATCGGCTCTC 58.384 52.381 0.00 0.00 41.66 3.20
135 136 2.257894 GATAAGCATCATCGGCTCTCG 58.742 52.381 0.00 0.00 41.66 4.04
145 146 2.561733 TCGGCTCTCGAGTGTAAATG 57.438 50.000 13.13 0.46 43.74 2.32
146 147 0.924090 CGGCTCTCGAGTGTAAATGC 59.076 55.000 13.13 6.63 42.43 3.56
147 148 1.735700 CGGCTCTCGAGTGTAAATGCA 60.736 52.381 13.13 0.00 42.43 3.96
148 149 1.661112 GGCTCTCGAGTGTAAATGCAC 59.339 52.381 13.13 0.00 39.51 4.57
198 199 9.549509 CTATCTCTGTATCGAAATACTTGTAGC 57.450 37.037 0.00 0.00 38.87 3.58
199 200 7.569639 TCTCTGTATCGAAATACTTGTAGCT 57.430 36.000 0.00 0.00 38.87 3.32
200 201 7.418408 TCTCTGTATCGAAATACTTGTAGCTG 58.582 38.462 0.00 0.00 38.87 4.24
201 202 6.504398 TCTGTATCGAAATACTTGTAGCTGG 58.496 40.000 0.00 0.00 38.87 4.85
202 203 5.597806 TGTATCGAAATACTTGTAGCTGGG 58.402 41.667 0.00 0.00 38.87 4.45
203 204 3.536956 TCGAAATACTTGTAGCTGGGG 57.463 47.619 0.00 0.00 0.00 4.96
204 205 3.101437 TCGAAATACTTGTAGCTGGGGA 58.899 45.455 0.00 0.00 0.00 4.81
205 206 3.516300 TCGAAATACTTGTAGCTGGGGAA 59.484 43.478 0.00 0.00 0.00 3.97
206 207 4.020039 TCGAAATACTTGTAGCTGGGGAAA 60.020 41.667 0.00 0.00 0.00 3.13
207 208 4.094442 CGAAATACTTGTAGCTGGGGAAAC 59.906 45.833 0.00 0.00 0.00 2.78
208 209 4.929146 AATACTTGTAGCTGGGGAAACT 57.071 40.909 0.00 0.00 0.00 2.66
209 210 6.382919 AAATACTTGTAGCTGGGGAAACTA 57.617 37.500 0.00 0.00 0.00 2.24
210 211 3.983044 ACTTGTAGCTGGGGAAACTAG 57.017 47.619 0.00 0.00 0.00 2.57
211 212 3.248888 ACTTGTAGCTGGGGAAACTAGT 58.751 45.455 0.00 0.00 0.00 2.57
212 213 4.422984 ACTTGTAGCTGGGGAAACTAGTA 58.577 43.478 0.00 0.00 0.00 1.82
213 214 4.222366 ACTTGTAGCTGGGGAAACTAGTAC 59.778 45.833 0.00 0.00 0.00 2.73
214 215 3.781808 TGTAGCTGGGGAAACTAGTACA 58.218 45.455 0.00 0.00 0.00 2.90
215 216 4.161876 TGTAGCTGGGGAAACTAGTACAA 58.838 43.478 0.00 0.00 0.00 2.41
216 217 3.983044 AGCTGGGGAAACTAGTACAAG 57.017 47.619 0.00 0.00 0.00 3.16
217 218 3.248888 AGCTGGGGAAACTAGTACAAGT 58.751 45.455 0.00 0.00 0.00 3.16
218 219 3.651423 AGCTGGGGAAACTAGTACAAGTT 59.349 43.478 0.00 0.00 41.46 2.66
219 220 4.001652 GCTGGGGAAACTAGTACAAGTTC 58.998 47.826 0.00 0.00 38.76 3.01
220 221 4.262938 GCTGGGGAAACTAGTACAAGTTCT 60.263 45.833 0.00 0.00 38.76 3.01
221 222 5.479124 TGGGGAAACTAGTACAAGTTCTC 57.521 43.478 0.00 0.00 38.76 2.87
222 223 4.285260 TGGGGAAACTAGTACAAGTTCTCC 59.715 45.833 14.04 14.04 38.76 3.71
223 224 4.323333 GGGGAAACTAGTACAAGTTCTCCC 60.323 50.000 10.88 18.64 40.85 4.30
224 225 4.285260 GGGAAACTAGTACAAGTTCTCCCA 59.715 45.833 20.31 0.00 38.76 4.37
225 226 5.221783 GGGAAACTAGTACAAGTTCTCCCAA 60.222 44.000 20.31 0.00 38.76 4.12
226 227 5.699915 GGAAACTAGTACAAGTTCTCCCAAC 59.300 44.000 0.00 0.00 38.76 3.77
227 228 6.464039 GGAAACTAGTACAAGTTCTCCCAACT 60.464 42.308 0.00 0.00 38.76 3.16
228 229 7.256083 GGAAACTAGTACAAGTTCTCCCAACTA 60.256 40.741 0.00 0.00 38.76 2.24
229 230 6.587206 ACTAGTACAAGTTCTCCCAACTAC 57.413 41.667 0.00 0.00 0.00 2.73
230 231 6.073314 ACTAGTACAAGTTCTCCCAACTACA 58.927 40.000 0.00 0.00 0.00 2.74
231 232 5.881923 AGTACAAGTTCTCCCAACTACAA 57.118 39.130 0.00 0.00 0.00 2.41
232 233 5.855045 AGTACAAGTTCTCCCAACTACAAG 58.145 41.667 0.00 0.00 0.00 3.16
233 234 4.772886 ACAAGTTCTCCCAACTACAAGT 57.227 40.909 0.00 0.00 0.00 3.16
234 235 5.881923 ACAAGTTCTCCCAACTACAAGTA 57.118 39.130 0.00 0.00 0.00 2.24
235 236 6.435292 ACAAGTTCTCCCAACTACAAGTAT 57.565 37.500 0.00 0.00 0.00 2.12
236 237 6.838382 ACAAGTTCTCCCAACTACAAGTATT 58.162 36.000 0.00 0.00 0.00 1.89
237 238 7.287810 ACAAGTTCTCCCAACTACAAGTATTT 58.712 34.615 0.00 0.00 0.00 1.40
238 239 7.778382 ACAAGTTCTCCCAACTACAAGTATTTT 59.222 33.333 0.00 0.00 0.00 1.82
239 240 9.280174 CAAGTTCTCCCAACTACAAGTATTTTA 57.720 33.333 0.00 0.00 0.00 1.52
240 241 9.503399 AAGTTCTCCCAACTACAAGTATTTTAG 57.497 33.333 0.00 0.00 0.00 1.85
241 242 8.657712 AGTTCTCCCAACTACAAGTATTTTAGT 58.342 33.333 0.00 0.00 0.00 2.24
242 243 9.933723 GTTCTCCCAACTACAAGTATTTTAGTA 57.066 33.333 0.00 0.00 0.00 1.82
243 244 9.933723 TTCTCCCAACTACAAGTATTTTAGTAC 57.066 33.333 0.00 0.00 0.00 2.73
244 245 8.246180 TCTCCCAACTACAAGTATTTTAGTACG 58.754 37.037 0.00 0.00 0.00 3.67
245 246 7.322664 TCCCAACTACAAGTATTTTAGTACGG 58.677 38.462 0.00 0.00 0.00 4.02
246 247 7.178274 TCCCAACTACAAGTATTTTAGTACGGA 59.822 37.037 0.00 4.14 0.00 4.69
247 248 7.276438 CCCAACTACAAGTATTTTAGTACGGAC 59.724 40.741 0.00 0.00 0.00 4.79
248 249 7.008628 CCAACTACAAGTATTTTAGTACGGACG 59.991 40.741 0.00 0.00 0.00 4.79
249 250 6.555315 ACTACAAGTATTTTAGTACGGACGG 58.445 40.000 0.00 0.00 0.00 4.79
250 251 5.643379 ACAAGTATTTTAGTACGGACGGA 57.357 39.130 0.00 0.00 0.00 4.69
251 252 5.644644 ACAAGTATTTTAGTACGGACGGAG 58.355 41.667 0.00 0.00 0.00 4.63
267 268 4.864704 ACGGAGTAATTGCCAAAAATGT 57.135 36.364 0.00 0.00 41.94 2.71
268 269 5.208463 ACGGAGTAATTGCCAAAAATGTT 57.792 34.783 0.00 0.00 41.94 2.71
269 270 5.606505 ACGGAGTAATTGCCAAAAATGTTT 58.393 33.333 0.00 0.00 41.94 2.83
270 271 6.052360 ACGGAGTAATTGCCAAAAATGTTTT 58.948 32.000 0.00 0.00 41.94 2.43
271 272 7.210873 ACGGAGTAATTGCCAAAAATGTTTTA 58.789 30.769 0.00 0.00 41.94 1.52
272 273 7.711339 ACGGAGTAATTGCCAAAAATGTTTTAA 59.289 29.630 0.00 0.00 41.94 1.52
273 274 8.552034 CGGAGTAATTGCCAAAAATGTTTTAAA 58.448 29.630 0.00 0.00 0.00 1.52
307 308 3.878160 TTTTGAAAACGAACTTGGCCT 57.122 38.095 3.32 0.00 0.00 5.19
308 309 2.861462 TTGAAAACGAACTTGGCCTG 57.139 45.000 3.32 0.00 0.00 4.85
309 310 0.383949 TGAAAACGAACTTGGCCTGC 59.616 50.000 3.32 0.00 0.00 4.85
310 311 0.668535 GAAAACGAACTTGGCCTGCT 59.331 50.000 3.32 0.00 0.00 4.24
311 312 0.385390 AAAACGAACTTGGCCTGCTG 59.615 50.000 3.32 0.00 0.00 4.41
312 313 0.751643 AAACGAACTTGGCCTGCTGT 60.752 50.000 3.32 0.00 0.00 4.40
313 314 0.751643 AACGAACTTGGCCTGCTGTT 60.752 50.000 3.32 3.52 0.00 3.16
314 315 1.166531 ACGAACTTGGCCTGCTGTTC 61.167 55.000 3.32 11.78 36.44 3.18
315 316 0.886490 CGAACTTGGCCTGCTGTTCT 60.886 55.000 19.90 0.00 37.31 3.01
316 317 1.608025 CGAACTTGGCCTGCTGTTCTA 60.608 52.381 19.90 0.00 37.31 2.10
317 318 1.807142 GAACTTGGCCTGCTGTTCTAC 59.193 52.381 3.32 0.00 36.73 2.59
318 319 1.059913 ACTTGGCCTGCTGTTCTACT 58.940 50.000 3.32 0.00 0.00 2.57
319 320 1.002544 ACTTGGCCTGCTGTTCTACTC 59.997 52.381 3.32 0.00 0.00 2.59
320 321 0.037326 TTGGCCTGCTGTTCTACTCG 60.037 55.000 3.32 0.00 0.00 4.18
321 322 1.811679 GGCCTGCTGTTCTACTCGC 60.812 63.158 0.00 0.00 0.00 5.03
322 323 1.079819 GCCTGCTGTTCTACTCGCA 60.080 57.895 0.00 0.00 0.00 5.10
323 324 0.460987 GCCTGCTGTTCTACTCGCAT 60.461 55.000 0.00 0.00 0.00 4.73
324 325 1.202417 GCCTGCTGTTCTACTCGCATA 60.202 52.381 0.00 0.00 0.00 3.14
325 326 2.738643 GCCTGCTGTTCTACTCGCATAA 60.739 50.000 0.00 0.00 0.00 1.90
326 327 3.521560 CCTGCTGTTCTACTCGCATAAA 58.478 45.455 0.00 0.00 0.00 1.40
327 328 3.932710 CCTGCTGTTCTACTCGCATAAAA 59.067 43.478 0.00 0.00 0.00 1.52
328 329 4.391830 CCTGCTGTTCTACTCGCATAAAAA 59.608 41.667 0.00 0.00 0.00 1.94
329 330 5.446473 CCTGCTGTTCTACTCGCATAAAAAG 60.446 44.000 0.00 0.00 0.00 2.27
330 331 4.994852 TGCTGTTCTACTCGCATAAAAAGT 59.005 37.500 0.00 0.00 0.00 2.66
331 332 5.468746 TGCTGTTCTACTCGCATAAAAAGTT 59.531 36.000 0.00 0.00 0.00 2.66
332 333 6.017440 TGCTGTTCTACTCGCATAAAAAGTTT 60.017 34.615 0.00 0.00 0.00 2.66
333 334 6.520104 GCTGTTCTACTCGCATAAAAAGTTTC 59.480 38.462 0.00 0.00 0.00 2.78
334 335 7.485418 TGTTCTACTCGCATAAAAAGTTTCA 57.515 32.000 0.00 0.00 0.00 2.69
335 336 7.349711 TGTTCTACTCGCATAAAAAGTTTCAC 58.650 34.615 0.00 0.00 0.00 3.18
336 337 6.476243 TCTACTCGCATAAAAAGTTTCACC 57.524 37.500 0.00 0.00 0.00 4.02
337 338 5.992829 TCTACTCGCATAAAAAGTTTCACCA 59.007 36.000 0.00 0.00 0.00 4.17
338 339 5.508200 ACTCGCATAAAAAGTTTCACCAA 57.492 34.783 0.00 0.00 0.00 3.67
339 340 6.084326 ACTCGCATAAAAAGTTTCACCAAT 57.916 33.333 0.00 0.00 0.00 3.16
340 341 5.920273 ACTCGCATAAAAAGTTTCACCAATG 59.080 36.000 0.00 0.00 0.00 2.82
341 342 6.078202 TCGCATAAAAAGTTTCACCAATGA 57.922 33.333 0.00 0.00 0.00 2.57
342 343 6.507900 TCGCATAAAAAGTTTCACCAATGAA 58.492 32.000 0.00 0.00 43.28 2.57
343 344 7.151308 TCGCATAAAAAGTTTCACCAATGAAT 58.849 30.769 0.00 0.00 44.36 2.57
344 345 8.300286 TCGCATAAAAAGTTTCACCAATGAATA 58.700 29.630 0.00 0.00 44.36 1.75
345 346 8.920665 CGCATAAAAAGTTTCACCAATGAATAA 58.079 29.630 0.00 0.00 44.36 1.40
351 352 9.883142 AAAAGTTTCACCAATGAATAACTTTGA 57.117 25.926 15.42 0.00 46.05 2.69
353 354 9.480053 AAGTTTCACCAATGAATAACTTTGATG 57.520 29.630 0.00 0.00 40.57 3.07
354 355 8.090214 AGTTTCACCAATGAATAACTTTGATGG 58.910 33.333 0.00 0.00 44.36 3.51
355 356 7.537596 TTCACCAATGAATAACTTTGATGGT 57.462 32.000 0.00 0.00 40.01 3.55
356 357 8.642935 TTCACCAATGAATAACTTTGATGGTA 57.357 30.769 0.00 0.00 40.01 3.25
357 358 8.279970 TCACCAATGAATAACTTTGATGGTAG 57.720 34.615 0.00 0.00 36.25 3.18
358 359 7.888021 TCACCAATGAATAACTTTGATGGTAGT 59.112 33.333 0.00 0.00 36.25 2.73
359 360 8.522830 CACCAATGAATAACTTTGATGGTAGTT 58.477 33.333 0.00 0.00 38.16 2.24
360 361 8.522830 ACCAATGAATAACTTTGATGGTAGTTG 58.477 33.333 0.00 0.00 36.16 3.16
361 362 8.739039 CCAATGAATAACTTTGATGGTAGTTGA 58.261 33.333 0.00 0.00 36.16 3.18
447 448 2.990066 TTTTGCGGGTGGAAATTTGT 57.010 40.000 0.00 0.00 35.22 2.83
448 449 2.990066 TTTGCGGGTGGAAATTTGTT 57.010 40.000 0.00 0.00 29.72 2.83
449 450 2.990066 TTGCGGGTGGAAATTTGTTT 57.010 40.000 0.00 0.00 0.00 2.83
450 451 2.990066 TGCGGGTGGAAATTTGTTTT 57.010 40.000 0.00 0.00 0.00 2.43
451 452 3.268023 TGCGGGTGGAAATTTGTTTTT 57.732 38.095 0.00 0.00 0.00 1.94
473 474 8.669946 TTTTTATTTGCCTTAAAGTCAAAGGG 57.330 30.769 4.18 0.00 43.21 3.95
474 475 7.604657 TTTATTTGCCTTAAAGTCAAAGGGA 57.395 32.000 4.18 0.00 43.21 4.20
475 476 5.728637 ATTTGCCTTAAAGTCAAAGGGAG 57.271 39.130 4.18 0.00 44.11 4.30
476 477 3.876309 TGCCTTAAAGTCAAAGGGAGT 57.124 42.857 4.18 0.00 43.21 3.85
477 478 4.178956 TGCCTTAAAGTCAAAGGGAGTT 57.821 40.909 4.18 0.00 43.21 3.01
479 480 4.959839 TGCCTTAAAGTCAAAGGGAGTTTT 59.040 37.500 4.18 0.00 44.82 2.43
480 481 5.423931 TGCCTTAAAGTCAAAGGGAGTTTTT 59.576 36.000 4.18 0.00 44.82 1.94
505 506 8.897872 TTCTTCGAGGAACTTTTTATACAAGT 57.102 30.769 5.78 0.00 41.55 3.16
506 507 8.897872 TCTTCGAGGAACTTTTTATACAAGTT 57.102 30.769 8.40 8.40 45.28 2.66
517 518 9.185680 ACTTTTTATACAAGTTCAACAGAAGGT 57.814 29.630 0.00 0.00 29.75 3.50
518 519 9.665264 CTTTTTATACAAGTTCAACAGAAGGTC 57.335 33.333 0.00 0.00 0.00 3.85
519 520 8.740123 TTTTATACAAGTTCAACAGAAGGTCA 57.260 30.769 0.00 0.00 0.00 4.02
520 521 8.740123 TTTATACAAGTTCAACAGAAGGTCAA 57.260 30.769 0.00 0.00 0.00 3.18
521 522 8.740123 TTATACAAGTTCAACAGAAGGTCAAA 57.260 30.769 0.00 0.00 0.00 2.69
522 523 7.823745 ATACAAGTTCAACAGAAGGTCAAAT 57.176 32.000 0.00 0.00 0.00 2.32
523 524 6.530019 ACAAGTTCAACAGAAGGTCAAATT 57.470 33.333 0.00 0.00 0.00 1.82
524 525 6.935167 ACAAGTTCAACAGAAGGTCAAATTT 58.065 32.000 0.00 0.00 0.00 1.82
525 526 6.813152 ACAAGTTCAACAGAAGGTCAAATTTG 59.187 34.615 12.15 12.15 32.06 2.32
526 527 6.530019 AGTTCAACAGAAGGTCAAATTTGT 57.470 33.333 17.47 0.00 0.00 2.83
527 528 6.935167 AGTTCAACAGAAGGTCAAATTTGTT 58.065 32.000 17.47 5.21 0.00 2.83
528 529 7.386059 AGTTCAACAGAAGGTCAAATTTGTTT 58.614 30.769 17.47 10.68 0.00 2.83
529 530 7.545615 AGTTCAACAGAAGGTCAAATTTGTTTC 59.454 33.333 17.47 17.35 0.00 2.78
530 531 6.929625 TCAACAGAAGGTCAAATTTGTTTCA 58.070 32.000 17.47 0.00 0.00 2.69
531 532 7.382110 TCAACAGAAGGTCAAATTTGTTTCAA 58.618 30.769 17.47 0.00 0.00 2.69
532 533 7.875041 TCAACAGAAGGTCAAATTTGTTTCAAA 59.125 29.630 17.47 0.00 0.00 2.69
533 534 8.502387 CAACAGAAGGTCAAATTTGTTTCAAAA 58.498 29.630 17.47 0.00 0.00 2.44
534 535 8.791327 ACAGAAGGTCAAATTTGTTTCAAAAT 57.209 26.923 17.47 3.34 0.00 1.82
535 536 9.230122 ACAGAAGGTCAAATTTGTTTCAAAATT 57.770 25.926 17.47 3.65 40.60 1.82
583 584 8.408743 ACTAGTTTCTTTTCTATATCACGTGC 57.591 34.615 11.67 0.00 0.00 5.34
584 585 8.033038 ACTAGTTTCTTTTCTATATCACGTGCA 58.967 33.333 11.67 0.71 0.00 4.57
585 586 7.849804 AGTTTCTTTTCTATATCACGTGCAT 57.150 32.000 11.67 9.14 0.00 3.96
586 587 8.942338 AGTTTCTTTTCTATATCACGTGCATA 57.058 30.769 11.67 10.13 0.00 3.14
587 588 9.547753 AGTTTCTTTTCTATATCACGTGCATAT 57.452 29.630 11.67 16.08 0.00 1.78
596 597 4.935630 CGTGCATATACGCCGAGA 57.064 55.556 0.00 0.00 37.24 4.04
597 598 2.713303 CGTGCATATACGCCGAGAG 58.287 57.895 0.00 0.00 37.24 3.20
598 599 1.337817 CGTGCATATACGCCGAGAGC 61.338 60.000 0.00 0.00 37.24 4.09
599 600 1.009389 GTGCATATACGCCGAGAGCC 61.009 60.000 0.00 0.00 38.78 4.70
600 601 1.289066 GCATATACGCCGAGAGCCA 59.711 57.895 0.00 0.00 38.78 4.75
601 602 0.319555 GCATATACGCCGAGAGCCAA 60.320 55.000 0.00 0.00 38.78 4.52
602 603 1.872237 GCATATACGCCGAGAGCCAAA 60.872 52.381 0.00 0.00 38.78 3.28
603 604 2.061773 CATATACGCCGAGAGCCAAAG 58.938 52.381 0.00 0.00 38.78 2.77
604 605 0.387929 TATACGCCGAGAGCCAAAGG 59.612 55.000 0.00 0.00 38.78 3.11
605 606 1.614241 ATACGCCGAGAGCCAAAGGT 61.614 55.000 0.00 0.00 38.78 3.50
606 607 0.966875 TACGCCGAGAGCCAAAGGTA 60.967 55.000 0.00 0.00 38.78 3.08
607 608 1.144057 CGCCGAGAGCCAAAGGTAT 59.856 57.895 0.00 0.00 38.78 2.73
608 609 0.462047 CGCCGAGAGCCAAAGGTATT 60.462 55.000 0.00 0.00 38.78 1.89
609 610 1.751437 GCCGAGAGCCAAAGGTATTT 58.249 50.000 0.00 0.00 34.35 1.40
610 611 1.671328 GCCGAGAGCCAAAGGTATTTC 59.329 52.381 0.00 0.00 34.35 2.17
611 612 2.289565 CCGAGAGCCAAAGGTATTTCC 58.710 52.381 0.00 0.00 0.00 3.13
612 613 1.933853 CGAGAGCCAAAGGTATTTCCG 59.066 52.381 0.00 0.00 41.99 4.30
613 614 2.289565 GAGAGCCAAAGGTATTTCCGG 58.710 52.381 0.00 0.00 41.99 5.14
614 615 1.633945 AGAGCCAAAGGTATTTCCGGT 59.366 47.619 0.00 0.00 41.99 5.28
615 616 2.041216 AGAGCCAAAGGTATTTCCGGTT 59.959 45.455 0.00 0.00 41.99 4.44
616 617 3.264964 AGAGCCAAAGGTATTTCCGGTTA 59.735 43.478 0.00 0.00 41.99 2.85
617 618 3.349927 AGCCAAAGGTATTTCCGGTTAC 58.650 45.455 0.00 2.32 41.99 2.50
618 619 3.083293 GCCAAAGGTATTTCCGGTTACA 58.917 45.455 0.00 0.00 41.99 2.41
619 620 3.506844 GCCAAAGGTATTTCCGGTTACAA 59.493 43.478 0.00 0.00 41.99 2.41
620 621 4.158949 GCCAAAGGTATTTCCGGTTACAAT 59.841 41.667 0.00 0.00 41.99 2.71
621 622 5.336929 GCCAAAGGTATTTCCGGTTACAATT 60.337 40.000 0.00 0.00 41.99 2.32
622 623 6.096695 CCAAAGGTATTTCCGGTTACAATTG 58.903 40.000 3.24 3.24 41.99 2.32
623 624 4.976224 AGGTATTTCCGGTTACAATTGC 57.024 40.909 5.05 0.00 41.99 3.56
624 625 4.595986 AGGTATTTCCGGTTACAATTGCT 58.404 39.130 5.05 0.00 41.99 3.91
625 626 4.638865 AGGTATTTCCGGTTACAATTGCTC 59.361 41.667 5.05 0.00 41.99 4.26
626 627 4.638865 GGTATTTCCGGTTACAATTGCTCT 59.361 41.667 5.05 0.00 0.00 4.09
627 628 5.124936 GGTATTTCCGGTTACAATTGCTCTT 59.875 40.000 5.05 0.00 0.00 2.85
628 629 6.316890 GGTATTTCCGGTTACAATTGCTCTTA 59.683 38.462 5.05 0.00 0.00 2.10
629 630 5.873179 TTTCCGGTTACAATTGCTCTTAG 57.127 39.130 5.05 0.00 0.00 2.18
630 631 4.811969 TCCGGTTACAATTGCTCTTAGA 57.188 40.909 5.05 0.00 0.00 2.10
631 632 5.155278 TCCGGTTACAATTGCTCTTAGAA 57.845 39.130 5.05 0.00 0.00 2.10
632 633 5.553123 TCCGGTTACAATTGCTCTTAGAAA 58.447 37.500 5.05 0.00 0.00 2.52
633 634 5.410439 TCCGGTTACAATTGCTCTTAGAAAC 59.590 40.000 5.05 0.00 0.00 2.78
634 635 5.180492 CCGGTTACAATTGCTCTTAGAAACA 59.820 40.000 5.05 0.00 0.00 2.83
635 636 6.077838 CGGTTACAATTGCTCTTAGAAACAC 58.922 40.000 5.05 0.00 0.00 3.32
636 637 6.379386 GGTTACAATTGCTCTTAGAAACACC 58.621 40.000 5.05 0.00 0.00 4.16
637 638 6.206829 GGTTACAATTGCTCTTAGAAACACCT 59.793 38.462 5.05 0.00 0.00 4.00
638 639 7.255486 GGTTACAATTGCTCTTAGAAACACCTT 60.255 37.037 5.05 0.00 0.00 3.50
639 640 6.715347 ACAATTGCTCTTAGAAACACCTTT 57.285 33.333 5.05 0.00 0.00 3.11
640 641 6.507023 ACAATTGCTCTTAGAAACACCTTTG 58.493 36.000 5.05 0.00 0.00 2.77
641 642 5.712152 ATTGCTCTTAGAAACACCTTTGG 57.288 39.130 0.00 0.00 0.00 3.28
642 643 2.884639 TGCTCTTAGAAACACCTTTGGC 59.115 45.455 0.00 0.00 0.00 4.52
643 644 2.229062 GCTCTTAGAAACACCTTTGGCC 59.771 50.000 0.00 0.00 0.00 5.36
644 645 2.484264 CTCTTAGAAACACCTTTGGCCG 59.516 50.000 0.00 0.00 0.00 6.13
645 646 1.539827 CTTAGAAACACCTTTGGCCGG 59.460 52.381 0.00 0.00 0.00 6.13
646 647 0.250989 TAGAAACACCTTTGGCCGGG 60.251 55.000 2.18 2.55 0.00 5.73
647 648 1.529713 GAAACACCTTTGGCCGGGA 60.530 57.895 14.86 0.00 0.00 5.14
648 649 1.075896 AAACACCTTTGGCCGGGAA 60.076 52.632 14.86 1.42 0.00 3.97
649 650 0.471022 AAACACCTTTGGCCGGGAAT 60.471 50.000 14.86 1.31 0.00 3.01
650 651 0.406361 AACACCTTTGGCCGGGAATA 59.594 50.000 14.86 0.00 0.00 1.75
651 652 0.323087 ACACCTTTGGCCGGGAATAC 60.323 55.000 14.86 0.00 0.00 1.89
652 653 1.035385 CACCTTTGGCCGGGAATACC 61.035 60.000 14.86 0.00 0.00 2.73
672 673 1.372997 CGACACAACTGGTCCTCCG 60.373 63.158 0.00 0.00 36.30 4.63
673 674 1.668151 GACACAACTGGTCCTCCGC 60.668 63.158 0.00 0.00 36.30 5.54
761 763 2.961526 ACGGTCTGTTCGCTCATATT 57.038 45.000 0.00 0.00 0.00 1.28
767 769 4.443034 GGTCTGTTCGCTCATATTTACCCT 60.443 45.833 0.00 0.00 0.00 4.34
768 770 4.745620 GTCTGTTCGCTCATATTTACCCTC 59.254 45.833 0.00 0.00 0.00 4.30
771 794 3.746045 TCGCTCATATTTACCCTCACC 57.254 47.619 0.00 0.00 0.00 4.02
859 885 2.092882 GTAACTGAGGTCGGCGTGC 61.093 63.158 6.85 0.68 0.00 5.34
910 938 1.074566 AGCTGCTACTTTTGGAAGGCT 59.925 47.619 0.00 0.00 37.19 4.58
957 1255 5.175126 ACAACTCTTGATTACACGAGAAACG 59.825 40.000 9.92 0.00 42.52 3.60
1066 1364 2.124942 CGCCTCCAAAGCTCTCCC 60.125 66.667 0.00 0.00 0.00 4.30
1107 1405 3.756434 GCTCGCTCTCTATTCTACCATCT 59.244 47.826 0.00 0.00 0.00 2.90
1222 1520 2.633488 TCCACATTGACGTTGTTGACA 58.367 42.857 0.00 0.00 0.00 3.58
1455 1753 5.134725 AGAGAGATAAACCCAATGCCAAT 57.865 39.130 0.00 0.00 0.00 3.16
1575 1873 1.202817 GAGTTGAAGAGGGACCGAGTC 59.797 57.143 0.00 0.00 0.00 3.36
1650 1948 0.042131 ATGTCTCCAAGGGGTCGGTA 59.958 55.000 0.00 0.00 34.93 4.02
1698 1996 4.309950 AGGGTTGTGTCGGTCGCC 62.310 66.667 0.00 0.00 0.00 5.54
1827 2125 9.117145 GATATTCACAATGCAATTTATACACCG 57.883 33.333 0.00 0.00 31.22 4.94
2337 2660 3.493877 TGCCATTTGAAAATGTTTCAGCG 59.506 39.130 13.28 0.03 43.24 5.18
2344 2667 3.058708 TGAAAATGTTTCAGCGCAGAGAG 60.059 43.478 11.47 0.00 0.00 3.20
2361 2684 3.328931 AGAGAGGCAAAATCTTCAGGACA 59.671 43.478 0.00 0.00 0.00 4.02
2483 2806 8.819974 CCTGTCTGTCTTAGTTAAAAACGTTTA 58.180 33.333 15.03 0.00 36.23 2.01
2585 2911 2.241941 ATGATGGCACATCCACCACTTA 59.758 45.455 11.25 0.00 42.45 2.24
2671 2997 4.120331 GTGATGCAACAGGGCGGC 62.120 66.667 0.00 0.00 36.28 6.53
2900 3226 0.951040 GTGACAAGCCTCCAGTTCCG 60.951 60.000 0.00 0.00 0.00 4.30
2960 3286 4.487948 CATTCGAAATTGGAGTGCACATT 58.512 39.130 21.04 6.98 0.00 2.71
3089 3416 1.043673 ACTGAGATCCCGGCCTGTAC 61.044 60.000 0.00 0.00 0.00 2.90
3130 3460 3.367703 GGAATGAACTCCATTTGCACCAG 60.368 47.826 0.00 0.00 45.00 4.00
3131 3461 2.363306 TGAACTCCATTTGCACCAGT 57.637 45.000 0.00 0.00 0.00 4.00
3153 3484 7.138736 CAGTTCCCGTAGCAAAATTATATTGG 58.861 38.462 0.00 0.00 0.00 3.16
3154 3485 6.264518 AGTTCCCGTAGCAAAATTATATTGGG 59.735 38.462 0.00 0.00 0.00 4.12
3155 3486 5.074115 TCCCGTAGCAAAATTATATTGGGG 58.926 41.667 0.00 0.00 33.67 4.96
3166 3497 9.184523 CAAAATTATATTGGGGAGTCTAACACA 57.815 33.333 0.00 0.00 0.00 3.72
3206 3856 9.968870 ACTTTCTCCTATGAGTAATCGAATAAC 57.031 33.333 0.00 0.00 39.75 1.89
3259 3909 8.479313 AACGCGATGACATTGTAATCATATAT 57.521 30.769 15.93 0.00 35.67 0.86
3278 3981 2.877097 TTCTGCCATGCTTCTGGTTA 57.123 45.000 0.00 0.00 38.63 2.85
3321 4024 4.152402 CGAACTCCTCCTGTGTGTATTTTG 59.848 45.833 0.00 0.00 0.00 2.44
3341 4044 1.931906 CAGTCAGTCATCATCACCGG 58.068 55.000 0.00 0.00 0.00 5.28
3675 4902 2.997315 CCGAGCTCCACACCCTCA 60.997 66.667 8.47 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.606604 GGCTGGTCCGTAAACTCTGA 59.393 55.000 0.00 0.00 0.00 3.27
4 5 1.053424 TGAAGGCTGGTCCGTAAACT 58.947 50.000 0.00 0.00 40.77 2.66
5 6 1.886886 TTGAAGGCTGGTCCGTAAAC 58.113 50.000 0.00 0.00 40.77 2.01
6 7 2.642154 TTTGAAGGCTGGTCCGTAAA 57.358 45.000 0.00 0.00 40.77 2.01
7 8 2.432444 CATTTGAAGGCTGGTCCGTAA 58.568 47.619 0.00 0.00 40.77 3.18
8 9 1.948611 GCATTTGAAGGCTGGTCCGTA 60.949 52.381 0.00 0.00 40.77 4.02
9 10 1.244019 GCATTTGAAGGCTGGTCCGT 61.244 55.000 0.00 0.00 40.77 4.69
10 11 1.243342 TGCATTTGAAGGCTGGTCCG 61.243 55.000 1.96 0.00 40.77 4.79
11 12 1.188863 ATGCATTTGAAGGCTGGTCC 58.811 50.000 0.00 0.00 36.52 4.46
12 13 3.382546 ACATATGCATTTGAAGGCTGGTC 59.617 43.478 21.91 0.00 36.52 4.02
13 14 3.368248 ACATATGCATTTGAAGGCTGGT 58.632 40.909 21.91 0.00 36.52 4.00
14 15 5.717078 ATACATATGCATTTGAAGGCTGG 57.283 39.130 21.91 0.00 36.52 4.85
15 16 8.428186 AAAAATACATATGCATTTGAAGGCTG 57.572 30.769 21.91 3.21 36.52 4.85
57 58 7.573843 GTGGTCTCCATAAAAGCATACATATGC 60.574 40.741 14.77 14.77 46.48 3.14
58 59 7.445096 TGTGGTCTCCATAAAAGCATACATATG 59.555 37.037 0.00 0.00 35.28 1.78
59 60 7.517320 TGTGGTCTCCATAAAAGCATACATAT 58.483 34.615 0.00 0.00 35.28 1.78
60 61 6.894682 TGTGGTCTCCATAAAAGCATACATA 58.105 36.000 0.00 0.00 35.28 2.29
61 62 5.754782 TGTGGTCTCCATAAAAGCATACAT 58.245 37.500 0.00 0.00 35.28 2.29
62 63 5.172687 TGTGGTCTCCATAAAAGCATACA 57.827 39.130 0.00 0.00 35.28 2.29
63 64 7.094634 CCATATGTGGTCTCCATAAAAGCATAC 60.095 40.741 0.00 0.00 40.83 2.39
64 65 6.942005 CCATATGTGGTCTCCATAAAAGCATA 59.058 38.462 0.00 0.00 40.83 3.14
65 66 5.771666 CCATATGTGGTCTCCATAAAAGCAT 59.228 40.000 0.00 0.00 40.83 3.79
66 67 5.132502 CCATATGTGGTCTCCATAAAAGCA 58.867 41.667 0.00 0.00 40.83 3.91
67 68 4.520492 CCCATATGTGGTCTCCATAAAAGC 59.480 45.833 7.81 0.00 44.48 3.51
68 69 5.072741 CCCCATATGTGGTCTCCATAAAAG 58.927 45.833 7.81 0.00 44.48 2.27
69 70 4.729370 TCCCCATATGTGGTCTCCATAAAA 59.271 41.667 7.81 0.00 44.48 1.52
70 71 4.104102 GTCCCCATATGTGGTCTCCATAAA 59.896 45.833 7.81 0.00 44.48 1.40
71 72 3.650942 GTCCCCATATGTGGTCTCCATAA 59.349 47.826 7.81 0.00 44.48 1.90
72 73 3.116356 AGTCCCCATATGTGGTCTCCATA 60.116 47.826 7.81 0.00 44.48 2.74
73 74 2.057922 GTCCCCATATGTGGTCTCCAT 58.942 52.381 7.81 0.00 44.48 3.41
74 75 1.009552 AGTCCCCATATGTGGTCTCCA 59.990 52.381 7.81 0.00 44.48 3.86
75 76 1.694696 GAGTCCCCATATGTGGTCTCC 59.305 57.143 16.77 3.73 44.48 3.71
76 77 2.683768 AGAGTCCCCATATGTGGTCTC 58.316 52.381 18.93 18.93 44.48 3.36
77 78 2.877154 AGAGTCCCCATATGTGGTCT 57.123 50.000 7.81 3.79 44.48 3.85
78 79 4.409247 AGTTAAGAGTCCCCATATGTGGTC 59.591 45.833 7.81 0.00 44.48 4.02
79 80 4.371681 AGTTAAGAGTCCCCATATGTGGT 58.628 43.478 7.81 0.00 44.48 4.16
80 81 4.656112 AGAGTTAAGAGTCCCCATATGTGG 59.344 45.833 0.51 0.51 45.61 4.17
81 82 5.878406 AGAGTTAAGAGTCCCCATATGTG 57.122 43.478 1.24 0.00 0.00 3.21
82 83 6.684538 AGTAGAGTTAAGAGTCCCCATATGT 58.315 40.000 1.24 0.00 0.00 2.29
83 84 8.164733 TCTAGTAGAGTTAAGAGTCCCCATATG 58.835 40.741 0.00 0.00 0.00 1.78
84 85 8.290463 TCTAGTAGAGTTAAGAGTCCCCATAT 57.710 38.462 0.00 0.00 0.00 1.78
85 86 7.702807 TCTAGTAGAGTTAAGAGTCCCCATA 57.297 40.000 0.00 0.00 0.00 2.74
86 87 6.593759 TCTAGTAGAGTTAAGAGTCCCCAT 57.406 41.667 0.00 0.00 0.00 4.00
87 88 6.398655 TTCTAGTAGAGTTAAGAGTCCCCA 57.601 41.667 0.00 0.00 0.00 4.96
88 89 7.201929 CCAATTCTAGTAGAGTTAAGAGTCCCC 60.202 44.444 7.53 0.00 0.00 4.81
89 90 7.201929 CCCAATTCTAGTAGAGTTAAGAGTCCC 60.202 44.444 7.53 0.00 0.00 4.46
90 91 7.560626 TCCCAATTCTAGTAGAGTTAAGAGTCC 59.439 40.741 7.53 0.00 0.00 3.85
91 92 8.522542 TCCCAATTCTAGTAGAGTTAAGAGTC 57.477 38.462 7.53 0.00 0.00 3.36
95 96 9.699703 GCTTATCCCAATTCTAGTAGAGTTAAG 57.300 37.037 7.53 8.46 0.00 1.85
96 97 9.209048 TGCTTATCCCAATTCTAGTAGAGTTAA 57.791 33.333 7.53 0.00 0.00 2.01
97 98 8.777578 TGCTTATCCCAATTCTAGTAGAGTTA 57.222 34.615 7.53 0.00 0.00 2.24
98 99 7.676683 TGCTTATCCCAATTCTAGTAGAGTT 57.323 36.000 2.22 2.22 0.00 3.01
99 100 7.510685 TGATGCTTATCCCAATTCTAGTAGAGT 59.489 37.037 0.00 0.00 0.00 3.24
100 101 7.901029 TGATGCTTATCCCAATTCTAGTAGAG 58.099 38.462 0.00 0.00 0.00 2.43
101 102 7.855784 TGATGCTTATCCCAATTCTAGTAGA 57.144 36.000 0.00 0.00 0.00 2.59
102 103 7.490725 CGATGATGCTTATCCCAATTCTAGTAG 59.509 40.741 0.00 0.00 0.00 2.57
103 104 7.323420 CGATGATGCTTATCCCAATTCTAGTA 58.677 38.462 0.00 0.00 0.00 1.82
104 105 6.169094 CGATGATGCTTATCCCAATTCTAGT 58.831 40.000 0.00 0.00 0.00 2.57
105 106 5.583854 CCGATGATGCTTATCCCAATTCTAG 59.416 44.000 0.00 0.00 0.00 2.43
106 107 5.491070 CCGATGATGCTTATCCCAATTCTA 58.509 41.667 0.00 0.00 0.00 2.10
107 108 4.330250 CCGATGATGCTTATCCCAATTCT 58.670 43.478 0.00 0.00 0.00 2.40
108 109 3.119708 GCCGATGATGCTTATCCCAATTC 60.120 47.826 0.00 0.00 0.00 2.17
109 110 2.821969 GCCGATGATGCTTATCCCAATT 59.178 45.455 0.00 0.00 0.00 2.32
110 111 2.040813 AGCCGATGATGCTTATCCCAAT 59.959 45.455 0.00 0.00 34.87 3.16
111 112 1.421268 AGCCGATGATGCTTATCCCAA 59.579 47.619 0.00 0.00 34.87 4.12
112 113 1.002430 GAGCCGATGATGCTTATCCCA 59.998 52.381 0.00 0.00 39.69 4.37
113 114 1.277557 AGAGCCGATGATGCTTATCCC 59.722 52.381 0.00 0.00 39.69 3.85
114 115 2.615869 GAGAGCCGATGATGCTTATCC 58.384 52.381 0.00 0.00 39.69 2.59
115 116 2.095008 TCGAGAGCCGATGATGCTTATC 60.095 50.000 0.00 0.00 43.23 1.75
116 117 1.889170 TCGAGAGCCGATGATGCTTAT 59.111 47.619 0.00 0.00 43.23 1.73
117 118 1.318576 TCGAGAGCCGATGATGCTTA 58.681 50.000 0.00 0.00 43.23 3.09
118 119 2.119009 TCGAGAGCCGATGATGCTT 58.881 52.632 0.00 0.00 43.23 3.91
119 120 3.847621 TCGAGAGCCGATGATGCT 58.152 55.556 0.00 0.00 43.23 3.79
126 127 1.469251 GCATTTACACTCGAGAGCCGA 60.469 52.381 21.68 2.10 46.35 5.54
127 128 0.924090 GCATTTACACTCGAGAGCCG 59.076 55.000 21.68 6.89 40.25 5.52
128 129 1.661112 GTGCATTTACACTCGAGAGCC 59.339 52.381 21.68 0.00 37.58 4.70
172 173 9.549509 GCTACAAGTATTTCGATACAGAGATAG 57.450 37.037 0.00 0.00 0.00 2.08
173 174 9.286170 AGCTACAAGTATTTCGATACAGAGATA 57.714 33.333 0.00 0.00 0.00 1.98
174 175 8.079203 CAGCTACAAGTATTTCGATACAGAGAT 58.921 37.037 0.00 0.00 0.00 2.75
175 176 7.418408 CAGCTACAAGTATTTCGATACAGAGA 58.582 38.462 0.00 0.00 0.00 3.10
176 177 6.638873 CCAGCTACAAGTATTTCGATACAGAG 59.361 42.308 0.00 0.00 0.00 3.35
177 178 6.461092 CCCAGCTACAAGTATTTCGATACAGA 60.461 42.308 0.00 0.00 0.00 3.41
178 179 5.692204 CCCAGCTACAAGTATTTCGATACAG 59.308 44.000 0.00 0.00 0.00 2.74
179 180 5.452776 CCCCAGCTACAAGTATTTCGATACA 60.453 44.000 0.00 0.00 0.00 2.29
180 181 4.989168 CCCCAGCTACAAGTATTTCGATAC 59.011 45.833 0.00 0.00 0.00 2.24
181 182 4.897076 TCCCCAGCTACAAGTATTTCGATA 59.103 41.667 0.00 0.00 0.00 2.92
182 183 3.709653 TCCCCAGCTACAAGTATTTCGAT 59.290 43.478 0.00 0.00 0.00 3.59
183 184 3.101437 TCCCCAGCTACAAGTATTTCGA 58.899 45.455 0.00 0.00 0.00 3.71
184 185 3.536956 TCCCCAGCTACAAGTATTTCG 57.463 47.619 0.00 0.00 0.00 3.46
185 186 5.254115 AGTTTCCCCAGCTACAAGTATTTC 58.746 41.667 0.00 0.00 0.00 2.17
186 187 5.256806 AGTTTCCCCAGCTACAAGTATTT 57.743 39.130 0.00 0.00 0.00 1.40
187 188 4.929146 AGTTTCCCCAGCTACAAGTATT 57.071 40.909 0.00 0.00 0.00 1.89
188 189 5.030820 ACTAGTTTCCCCAGCTACAAGTAT 58.969 41.667 0.00 0.00 0.00 2.12
189 190 4.422984 ACTAGTTTCCCCAGCTACAAGTA 58.577 43.478 0.00 0.00 0.00 2.24
190 191 3.248888 ACTAGTTTCCCCAGCTACAAGT 58.751 45.455 0.00 0.00 0.00 3.16
191 192 3.983044 ACTAGTTTCCCCAGCTACAAG 57.017 47.619 0.00 0.00 0.00 3.16
192 193 4.161876 TGTACTAGTTTCCCCAGCTACAA 58.838 43.478 0.00 0.00 0.00 2.41
193 194 3.781808 TGTACTAGTTTCCCCAGCTACA 58.218 45.455 0.00 0.00 0.00 2.74
194 195 4.222366 ACTTGTACTAGTTTCCCCAGCTAC 59.778 45.833 0.00 0.00 0.00 3.58
195 196 4.422984 ACTTGTACTAGTTTCCCCAGCTA 58.577 43.478 0.00 0.00 0.00 3.32
196 197 3.248888 ACTTGTACTAGTTTCCCCAGCT 58.751 45.455 0.00 0.00 0.00 4.24
197 198 3.697619 ACTTGTACTAGTTTCCCCAGC 57.302 47.619 0.00 0.00 0.00 4.85
198 199 5.480205 GAGAACTTGTACTAGTTTCCCCAG 58.520 45.833 21.05 0.00 38.43 4.45
199 200 4.285260 GGAGAACTTGTACTAGTTTCCCCA 59.715 45.833 21.05 0.00 38.43 4.96
200 201 4.323333 GGGAGAACTTGTACTAGTTTCCCC 60.323 50.000 31.66 29.71 42.31 4.81
201 202 4.285260 TGGGAGAACTTGTACTAGTTTCCC 59.715 45.833 33.03 33.03 44.74 3.97
202 203 5.479124 TGGGAGAACTTGTACTAGTTTCC 57.521 43.478 25.16 25.16 38.43 3.13
203 204 6.522946 AGTTGGGAGAACTTGTACTAGTTTC 58.477 40.000 21.05 18.22 38.43 2.78
204 205 6.496144 AGTTGGGAGAACTTGTACTAGTTT 57.504 37.500 21.05 12.44 38.43 2.66
205 206 6.552350 TGTAGTTGGGAGAACTTGTACTAGTT 59.448 38.462 20.40 20.40 40.92 2.24
206 207 6.073314 TGTAGTTGGGAGAACTTGTACTAGT 58.927 40.000 3.98 3.98 0.00 2.57
207 208 6.585695 TGTAGTTGGGAGAACTTGTACTAG 57.414 41.667 2.56 2.56 0.00 2.57
208 209 6.552350 ACTTGTAGTTGGGAGAACTTGTACTA 59.448 38.462 0.00 0.00 0.00 1.82
209 210 5.365895 ACTTGTAGTTGGGAGAACTTGTACT 59.634 40.000 0.00 0.00 0.00 2.73
210 211 5.608449 ACTTGTAGTTGGGAGAACTTGTAC 58.392 41.667 0.00 0.00 0.00 2.90
211 212 5.881923 ACTTGTAGTTGGGAGAACTTGTA 57.118 39.130 0.00 0.00 0.00 2.41
212 213 4.772886 ACTTGTAGTTGGGAGAACTTGT 57.227 40.909 0.00 0.00 0.00 3.16
213 214 7.745620 AAATACTTGTAGTTGGGAGAACTTG 57.254 36.000 0.00 0.00 0.00 3.16
214 215 9.503399 CTAAAATACTTGTAGTTGGGAGAACTT 57.497 33.333 0.00 0.00 0.00 2.66
215 216 8.657712 ACTAAAATACTTGTAGTTGGGAGAACT 58.342 33.333 0.00 0.00 0.00 3.01
216 217 8.843885 ACTAAAATACTTGTAGTTGGGAGAAC 57.156 34.615 0.00 0.00 0.00 3.01
217 218 9.933723 GTACTAAAATACTTGTAGTTGGGAGAA 57.066 33.333 0.00 0.00 30.81 2.87
218 219 8.246180 CGTACTAAAATACTTGTAGTTGGGAGA 58.754 37.037 0.00 0.00 30.81 3.71
219 220 7.490402 CCGTACTAAAATACTTGTAGTTGGGAG 59.510 40.741 0.00 0.00 30.81 4.30
220 221 7.178274 TCCGTACTAAAATACTTGTAGTTGGGA 59.822 37.037 0.00 1.52 31.20 4.37
221 222 7.276438 GTCCGTACTAAAATACTTGTAGTTGGG 59.724 40.741 0.00 0.00 30.81 4.12
222 223 7.008628 CGTCCGTACTAAAATACTTGTAGTTGG 59.991 40.741 0.00 0.26 30.81 3.77
223 224 7.008628 CCGTCCGTACTAAAATACTTGTAGTTG 59.991 40.741 0.00 0.00 30.81 3.16
224 225 7.029563 CCGTCCGTACTAAAATACTTGTAGTT 58.970 38.462 0.00 0.00 30.81 2.24
225 226 6.374333 TCCGTCCGTACTAAAATACTTGTAGT 59.626 38.462 0.00 0.00 32.87 2.73
226 227 6.785191 TCCGTCCGTACTAAAATACTTGTAG 58.215 40.000 0.00 0.00 0.00 2.74
227 228 6.374333 ACTCCGTCCGTACTAAAATACTTGTA 59.626 38.462 0.00 0.00 0.00 2.41
228 229 5.183904 ACTCCGTCCGTACTAAAATACTTGT 59.816 40.000 0.00 0.00 0.00 3.16
229 230 5.644644 ACTCCGTCCGTACTAAAATACTTG 58.355 41.667 0.00 0.00 0.00 3.16
230 231 5.904362 ACTCCGTCCGTACTAAAATACTT 57.096 39.130 0.00 0.00 0.00 2.24
231 232 7.573968 ATTACTCCGTCCGTACTAAAATACT 57.426 36.000 0.00 0.00 0.00 2.12
232 233 7.306225 GCAATTACTCCGTCCGTACTAAAATAC 60.306 40.741 0.00 0.00 0.00 1.89
233 234 6.697019 GCAATTACTCCGTCCGTACTAAAATA 59.303 38.462 0.00 0.00 0.00 1.40
234 235 5.521372 GCAATTACTCCGTCCGTACTAAAAT 59.479 40.000 0.00 0.00 0.00 1.82
235 236 4.864247 GCAATTACTCCGTCCGTACTAAAA 59.136 41.667 0.00 0.00 0.00 1.52
236 237 4.423732 GCAATTACTCCGTCCGTACTAAA 58.576 43.478 0.00 0.00 0.00 1.85
237 238 3.181487 GGCAATTACTCCGTCCGTACTAA 60.181 47.826 0.00 0.00 0.00 2.24
238 239 2.358898 GGCAATTACTCCGTCCGTACTA 59.641 50.000 0.00 0.00 0.00 1.82
239 240 1.135721 GGCAATTACTCCGTCCGTACT 59.864 52.381 0.00 0.00 0.00 2.73
240 241 1.135024 TGGCAATTACTCCGTCCGTAC 60.135 52.381 0.00 0.00 0.00 3.67
241 242 1.184431 TGGCAATTACTCCGTCCGTA 58.816 50.000 0.00 0.00 0.00 4.02
242 243 0.322322 TTGGCAATTACTCCGTCCGT 59.678 50.000 0.00 0.00 0.00 4.69
243 244 1.444836 TTTGGCAATTACTCCGTCCG 58.555 50.000 0.00 0.00 0.00 4.79
244 245 3.926821 TTTTTGGCAATTACTCCGTCC 57.073 42.857 0.00 0.00 0.00 4.79
245 246 4.805219 ACATTTTTGGCAATTACTCCGTC 58.195 39.130 0.00 0.00 0.00 4.79
246 247 4.864704 ACATTTTTGGCAATTACTCCGT 57.135 36.364 0.00 0.00 0.00 4.69
247 248 6.538189 AAAACATTTTTGGCAATTACTCCG 57.462 33.333 0.00 0.00 0.00 4.63
286 287 3.929610 CAGGCCAAGTTCGTTTTCAAAAA 59.070 39.130 5.01 0.00 0.00 1.94
287 288 3.516615 CAGGCCAAGTTCGTTTTCAAAA 58.483 40.909 5.01 0.00 0.00 2.44
288 289 2.737039 GCAGGCCAAGTTCGTTTTCAAA 60.737 45.455 5.01 0.00 0.00 2.69
289 290 1.202359 GCAGGCCAAGTTCGTTTTCAA 60.202 47.619 5.01 0.00 0.00 2.69
290 291 0.383949 GCAGGCCAAGTTCGTTTTCA 59.616 50.000 5.01 0.00 0.00 2.69
291 292 0.668535 AGCAGGCCAAGTTCGTTTTC 59.331 50.000 5.01 0.00 0.00 2.29
292 293 0.385390 CAGCAGGCCAAGTTCGTTTT 59.615 50.000 5.01 0.00 0.00 2.43
293 294 0.751643 ACAGCAGGCCAAGTTCGTTT 60.752 50.000 5.01 0.00 0.00 3.60
294 295 0.751643 AACAGCAGGCCAAGTTCGTT 60.752 50.000 5.01 0.00 0.00 3.85
295 296 1.152963 AACAGCAGGCCAAGTTCGT 60.153 52.632 5.01 0.00 0.00 3.85
296 297 0.886490 AGAACAGCAGGCCAAGTTCG 60.886 55.000 5.01 0.00 43.71 3.95
297 298 1.807142 GTAGAACAGCAGGCCAAGTTC 59.193 52.381 5.01 13.09 40.37 3.01
298 299 1.421646 AGTAGAACAGCAGGCCAAGTT 59.578 47.619 5.01 3.36 0.00 2.66
299 300 1.002544 GAGTAGAACAGCAGGCCAAGT 59.997 52.381 5.01 0.00 0.00 3.16
300 301 1.731720 GAGTAGAACAGCAGGCCAAG 58.268 55.000 5.01 0.00 0.00 3.61
301 302 0.037326 CGAGTAGAACAGCAGGCCAA 60.037 55.000 5.01 0.00 0.00 4.52
302 303 1.591703 CGAGTAGAACAGCAGGCCA 59.408 57.895 5.01 0.00 0.00 5.36
303 304 1.811679 GCGAGTAGAACAGCAGGCC 60.812 63.158 0.00 0.00 0.00 5.19
304 305 0.460987 ATGCGAGTAGAACAGCAGGC 60.461 55.000 0.00 0.00 43.20 4.85
305 306 2.871182 TATGCGAGTAGAACAGCAGG 57.129 50.000 0.00 0.00 43.20 4.85
306 307 5.120830 ACTTTTTATGCGAGTAGAACAGCAG 59.879 40.000 0.00 0.00 43.20 4.24
307 308 4.994852 ACTTTTTATGCGAGTAGAACAGCA 59.005 37.500 0.00 3.41 44.13 4.41
308 309 5.532025 ACTTTTTATGCGAGTAGAACAGC 57.468 39.130 0.00 0.00 0.00 4.40
309 310 7.530861 GTGAAACTTTTTATGCGAGTAGAACAG 59.469 37.037 0.00 0.00 0.00 3.16
310 311 7.349711 GTGAAACTTTTTATGCGAGTAGAACA 58.650 34.615 0.00 0.00 0.00 3.18
311 312 6.795593 GGTGAAACTTTTTATGCGAGTAGAAC 59.204 38.462 0.00 0.00 36.74 3.01
312 313 6.483974 TGGTGAAACTTTTTATGCGAGTAGAA 59.516 34.615 0.00 0.00 36.74 2.10
313 314 5.992829 TGGTGAAACTTTTTATGCGAGTAGA 59.007 36.000 0.00 0.00 36.74 2.59
314 315 6.236017 TGGTGAAACTTTTTATGCGAGTAG 57.764 37.500 0.00 0.00 36.74 2.57
315 316 6.621316 TTGGTGAAACTTTTTATGCGAGTA 57.379 33.333 0.00 0.00 36.74 2.59
316 317 5.508200 TTGGTGAAACTTTTTATGCGAGT 57.492 34.783 0.00 0.00 36.74 4.18
317 318 6.148948 TCATTGGTGAAACTTTTTATGCGAG 58.851 36.000 0.00 0.00 36.74 5.03
318 319 6.078202 TCATTGGTGAAACTTTTTATGCGA 57.922 33.333 0.00 0.00 36.74 5.10
319 320 6.761731 TTCATTGGTGAAACTTTTTATGCG 57.238 33.333 0.00 0.00 41.22 4.73
325 326 9.883142 TCAAAGTTATTCATTGGTGAAACTTTT 57.117 25.926 13.89 4.20 44.78 2.27
327 328 9.480053 CATCAAAGTTATTCATTGGTGAAACTT 57.520 29.630 0.00 3.60 46.67 2.66
328 329 8.090214 CCATCAAAGTTATTCATTGGTGAAACT 58.910 33.333 0.00 0.00 46.67 2.66
329 330 7.872483 ACCATCAAAGTTATTCATTGGTGAAAC 59.128 33.333 0.00 0.00 46.67 2.78
330 331 7.961351 ACCATCAAAGTTATTCATTGGTGAAA 58.039 30.769 0.00 0.00 46.67 2.69
332 333 7.888021 ACTACCATCAAAGTTATTCATTGGTGA 59.112 33.333 0.00 0.00 37.87 4.02
333 334 8.055279 ACTACCATCAAAGTTATTCATTGGTG 57.945 34.615 0.00 0.00 36.89 4.17
334 335 8.522830 CAACTACCATCAAAGTTATTCATTGGT 58.477 33.333 0.00 0.00 39.44 3.67
335 336 8.739039 TCAACTACCATCAAAGTTATTCATTGG 58.261 33.333 0.00 0.00 34.23 3.16
339 340 9.959749 GTTTTCAACTACCATCAAAGTTATTCA 57.040 29.630 0.00 0.00 34.23 2.57
340 341 9.959749 TGTTTTCAACTACCATCAAAGTTATTC 57.040 29.630 0.00 0.00 34.23 1.75
343 344 9.796120 CTTTGTTTTCAACTACCATCAAAGTTA 57.204 29.630 0.00 0.00 39.73 2.24
344 345 8.311109 ACTTTGTTTTCAACTACCATCAAAGTT 58.689 29.630 12.17 0.00 45.85 2.66
345 346 7.836842 ACTTTGTTTTCAACTACCATCAAAGT 58.163 30.769 12.17 12.17 44.43 2.66
346 347 7.973388 TGACTTTGTTTTCAACTACCATCAAAG 59.027 33.333 0.00 0.00 43.07 2.77
347 348 7.831753 TGACTTTGTTTTCAACTACCATCAAA 58.168 30.769 0.00 0.00 39.73 2.69
348 349 7.397892 TGACTTTGTTTTCAACTACCATCAA 57.602 32.000 0.00 0.00 39.73 2.57
349 350 7.254852 GTTGACTTTGTTTTCAACTACCATCA 58.745 34.615 7.12 0.00 45.45 3.07
350 351 7.679659 GTTGACTTTGTTTTCAACTACCATC 57.320 36.000 7.12 0.00 45.45 3.51
427 428 3.268023 ACAAATTTCCACCCGCAAAAA 57.732 38.095 0.00 0.00 0.00 1.94
428 429 2.990066 ACAAATTTCCACCCGCAAAA 57.010 40.000 0.00 0.00 0.00 2.44
429 430 2.990066 AACAAATTTCCACCCGCAAA 57.010 40.000 0.00 0.00 0.00 3.68
430 431 2.990066 AAACAAATTTCCACCCGCAA 57.010 40.000 0.00 0.00 0.00 4.85
431 432 2.990066 AAAACAAATTTCCACCCGCA 57.010 40.000 0.00 0.00 0.00 5.69
455 456 4.178956 ACTCCCTTTGACTTTAAGGCAA 57.821 40.909 9.46 9.46 42.51 4.52
456 457 3.876309 ACTCCCTTTGACTTTAAGGCA 57.124 42.857 0.00 0.00 40.70 4.75
457 458 5.531122 AAAACTCCCTTTGACTTTAAGGC 57.469 39.130 0.00 0.00 40.70 4.35
479 480 9.333724 ACTTGTATAAAAAGTTCCTCGAAGAAA 57.666 29.630 0.00 0.00 34.16 2.52
480 481 8.897872 ACTTGTATAAAAAGTTCCTCGAAGAA 57.102 30.769 0.00 0.00 34.16 2.52
481 482 8.897872 AACTTGTATAAAAAGTTCCTCGAAGA 57.102 30.769 8.37 0.00 42.75 2.87
491 492 9.185680 ACCTTCTGTTGAACTTGTATAAAAAGT 57.814 29.630 0.00 0.00 39.55 2.66
492 493 9.665264 GACCTTCTGTTGAACTTGTATAAAAAG 57.335 33.333 0.00 0.00 0.00 2.27
493 494 9.179909 TGACCTTCTGTTGAACTTGTATAAAAA 57.820 29.630 0.00 0.00 0.00 1.94
494 495 8.740123 TGACCTTCTGTTGAACTTGTATAAAA 57.260 30.769 0.00 0.00 0.00 1.52
495 496 8.740123 TTGACCTTCTGTTGAACTTGTATAAA 57.260 30.769 0.00 0.00 0.00 1.40
496 497 8.740123 TTTGACCTTCTGTTGAACTTGTATAA 57.260 30.769 0.00 0.00 0.00 0.98
497 498 8.918202 ATTTGACCTTCTGTTGAACTTGTATA 57.082 30.769 0.00 0.00 0.00 1.47
498 499 7.823745 ATTTGACCTTCTGTTGAACTTGTAT 57.176 32.000 0.00 0.00 0.00 2.29
499 500 7.639113 AATTTGACCTTCTGTTGAACTTGTA 57.361 32.000 0.00 0.00 0.00 2.41
500 501 6.530019 AATTTGACCTTCTGTTGAACTTGT 57.470 33.333 0.00 0.00 0.00 3.16
501 502 6.813152 ACAAATTTGACCTTCTGTTGAACTTG 59.187 34.615 24.64 0.00 0.00 3.16
502 503 6.935167 ACAAATTTGACCTTCTGTTGAACTT 58.065 32.000 24.64 0.00 0.00 2.66
503 504 6.530019 ACAAATTTGACCTTCTGTTGAACT 57.470 33.333 24.64 0.00 0.00 3.01
504 505 7.330700 TGAAACAAATTTGACCTTCTGTTGAAC 59.669 33.333 24.64 3.66 0.00 3.18
505 506 7.382110 TGAAACAAATTTGACCTTCTGTTGAA 58.618 30.769 24.64 4.97 0.00 2.69
506 507 6.929625 TGAAACAAATTTGACCTTCTGTTGA 58.070 32.000 24.64 5.55 0.00 3.18
507 508 7.593875 TTGAAACAAATTTGACCTTCTGTTG 57.406 32.000 24.64 0.00 0.00 3.33
508 509 8.614469 TTTTGAAACAAATTTGACCTTCTGTT 57.386 26.923 24.64 3.64 0.00 3.16
509 510 8.791327 ATTTTGAAACAAATTTGACCTTCTGT 57.209 26.923 24.64 0.00 0.00 3.41
557 558 9.512435 GCACGTGATATAGAAAAGAAACTAGTA 57.488 33.333 22.23 0.00 0.00 1.82
558 559 8.033038 TGCACGTGATATAGAAAAGAAACTAGT 58.967 33.333 22.23 0.00 0.00 2.57
559 560 8.407457 TGCACGTGATATAGAAAAGAAACTAG 57.593 34.615 22.23 0.00 0.00 2.57
560 561 8.942338 ATGCACGTGATATAGAAAAGAAACTA 57.058 30.769 22.23 0.00 0.00 2.24
561 562 7.849804 ATGCACGTGATATAGAAAAGAAACT 57.150 32.000 22.23 0.00 0.00 2.66
564 565 9.124807 CGTATATGCACGTGATATAGAAAAGAA 57.875 33.333 22.23 0.23 37.16 2.52
565 566 7.272731 GCGTATATGCACGTGATATAGAAAAGA 59.727 37.037 22.23 0.88 43.79 2.52
566 567 7.384124 GCGTATATGCACGTGATATAGAAAAG 58.616 38.462 22.23 9.84 43.79 2.27
567 568 6.309494 GGCGTATATGCACGTGATATAGAAAA 59.691 38.462 22.23 2.18 43.79 2.29
568 569 5.803461 GGCGTATATGCACGTGATATAGAAA 59.197 40.000 22.23 4.54 43.79 2.52
569 570 5.337554 GGCGTATATGCACGTGATATAGAA 58.662 41.667 22.23 6.83 43.79 2.10
570 571 4.495184 CGGCGTATATGCACGTGATATAGA 60.495 45.833 22.23 11.28 43.79 1.98
571 572 3.724257 CGGCGTATATGCACGTGATATAG 59.276 47.826 22.23 15.57 43.79 1.31
572 573 3.374678 TCGGCGTATATGCACGTGATATA 59.625 43.478 22.23 18.65 43.79 0.86
573 574 2.162809 TCGGCGTATATGCACGTGATAT 59.837 45.455 22.23 19.58 43.79 1.63
574 575 1.536331 TCGGCGTATATGCACGTGATA 59.464 47.619 22.23 14.18 43.79 2.15
575 576 0.312729 TCGGCGTATATGCACGTGAT 59.687 50.000 22.23 12.38 43.79 3.06
576 577 0.317519 CTCGGCGTATATGCACGTGA 60.318 55.000 22.23 4.80 43.79 4.35
577 578 0.317519 TCTCGGCGTATATGCACGTG 60.318 55.000 18.41 12.28 43.79 4.49
578 579 0.040336 CTCTCGGCGTATATGCACGT 60.040 55.000 18.41 0.00 43.79 4.49
579 580 1.337817 GCTCTCGGCGTATATGCACG 61.338 60.000 18.41 17.51 44.71 5.34
580 581 1.009389 GGCTCTCGGCGTATATGCAC 61.009 60.000 18.41 7.21 42.94 4.57
581 582 1.289066 GGCTCTCGGCGTATATGCA 59.711 57.895 18.41 0.00 42.94 3.96
582 583 0.319555 TTGGCTCTCGGCGTATATGC 60.320 55.000 6.85 8.51 42.94 3.14
583 584 2.061773 CTTTGGCTCTCGGCGTATATG 58.938 52.381 6.85 0.00 42.94 1.78
584 585 1.000955 CCTTTGGCTCTCGGCGTATAT 59.999 52.381 6.85 0.00 42.94 0.86
585 586 0.387929 CCTTTGGCTCTCGGCGTATA 59.612 55.000 6.85 0.00 42.94 1.47
586 587 1.144057 CCTTTGGCTCTCGGCGTAT 59.856 57.895 6.85 0.00 42.94 3.06
587 588 0.966875 TACCTTTGGCTCTCGGCGTA 60.967 55.000 6.85 0.00 42.94 4.42
588 589 1.614241 ATACCTTTGGCTCTCGGCGT 61.614 55.000 6.85 0.00 42.94 5.68
589 590 0.462047 AATACCTTTGGCTCTCGGCG 60.462 55.000 0.00 0.00 42.94 6.46
590 591 1.671328 GAAATACCTTTGGCTCTCGGC 59.329 52.381 0.00 0.00 40.90 5.54
591 592 2.289565 GGAAATACCTTTGGCTCTCGG 58.710 52.381 0.00 0.00 35.41 4.63
592 593 1.933853 CGGAAATACCTTTGGCTCTCG 59.066 52.381 0.00 0.00 36.31 4.04
593 594 2.289565 CCGGAAATACCTTTGGCTCTC 58.710 52.381 0.00 0.00 36.31 3.20
594 595 1.633945 ACCGGAAATACCTTTGGCTCT 59.366 47.619 9.46 0.00 36.31 4.09
595 596 2.124277 ACCGGAAATACCTTTGGCTC 57.876 50.000 9.46 0.00 36.31 4.70
596 597 2.597578 AACCGGAAATACCTTTGGCT 57.402 45.000 9.46 0.00 36.31 4.75
597 598 3.083293 TGTAACCGGAAATACCTTTGGC 58.917 45.455 9.46 0.00 36.31 4.52
598 599 5.907866 ATTGTAACCGGAAATACCTTTGG 57.092 39.130 9.46 0.00 36.31 3.28
599 600 5.575218 GCAATTGTAACCGGAAATACCTTTG 59.425 40.000 9.46 14.15 36.31 2.77
600 601 5.479027 AGCAATTGTAACCGGAAATACCTTT 59.521 36.000 9.46 2.48 36.31 3.11
601 602 5.014202 AGCAATTGTAACCGGAAATACCTT 58.986 37.500 9.46 2.65 36.31 3.50
602 603 4.595986 AGCAATTGTAACCGGAAATACCT 58.404 39.130 9.46 0.00 36.31 3.08
603 604 4.638865 AGAGCAATTGTAACCGGAAATACC 59.361 41.667 9.46 0.00 0.00 2.73
604 605 5.813080 AGAGCAATTGTAACCGGAAATAC 57.187 39.130 9.46 9.17 0.00 1.89
605 606 7.332557 TCTAAGAGCAATTGTAACCGGAAATA 58.667 34.615 9.46 0.00 0.00 1.40
606 607 6.177610 TCTAAGAGCAATTGTAACCGGAAAT 58.822 36.000 9.46 0.00 0.00 2.17
607 608 5.553123 TCTAAGAGCAATTGTAACCGGAAA 58.447 37.500 9.46 0.00 0.00 3.13
608 609 5.155278 TCTAAGAGCAATTGTAACCGGAA 57.845 39.130 9.46 0.00 0.00 4.30
609 610 4.811969 TCTAAGAGCAATTGTAACCGGA 57.188 40.909 9.46 0.00 0.00 5.14
610 611 5.180492 TGTTTCTAAGAGCAATTGTAACCGG 59.820 40.000 7.40 0.00 0.00 5.28
611 612 6.077838 GTGTTTCTAAGAGCAATTGTAACCG 58.922 40.000 7.40 0.00 0.00 4.44
612 613 6.206829 AGGTGTTTCTAAGAGCAATTGTAACC 59.793 38.462 7.40 0.00 0.00 2.85
613 614 7.203255 AGGTGTTTCTAAGAGCAATTGTAAC 57.797 36.000 7.40 0.00 0.00 2.50
614 615 7.817418 AAGGTGTTTCTAAGAGCAATTGTAA 57.183 32.000 7.40 0.00 0.00 2.41
615 616 7.255451 CCAAAGGTGTTTCTAAGAGCAATTGTA 60.255 37.037 7.40 0.00 0.00 2.41
616 617 6.461509 CCAAAGGTGTTTCTAAGAGCAATTGT 60.462 38.462 7.40 0.00 0.00 2.71
617 618 5.922544 CCAAAGGTGTTTCTAAGAGCAATTG 59.077 40.000 0.00 0.00 0.00 2.32
618 619 5.509670 GCCAAAGGTGTTTCTAAGAGCAATT 60.510 40.000 0.00 0.00 0.00 2.32
619 620 4.021981 GCCAAAGGTGTTTCTAAGAGCAAT 60.022 41.667 0.00 0.00 0.00 3.56
620 621 3.317993 GCCAAAGGTGTTTCTAAGAGCAA 59.682 43.478 0.00 0.00 0.00 3.91
621 622 2.884639 GCCAAAGGTGTTTCTAAGAGCA 59.115 45.455 0.00 0.00 0.00 4.26
622 623 2.229062 GGCCAAAGGTGTTTCTAAGAGC 59.771 50.000 0.00 0.00 0.00 4.09
623 624 2.484264 CGGCCAAAGGTGTTTCTAAGAG 59.516 50.000 2.24 0.00 0.00 2.85
624 625 2.500229 CGGCCAAAGGTGTTTCTAAGA 58.500 47.619 2.24 0.00 0.00 2.10
625 626 1.539827 CCGGCCAAAGGTGTTTCTAAG 59.460 52.381 2.24 0.00 0.00 2.18
626 627 1.611519 CCGGCCAAAGGTGTTTCTAA 58.388 50.000 2.24 0.00 0.00 2.10
627 628 0.250989 CCCGGCCAAAGGTGTTTCTA 60.251 55.000 2.24 0.00 0.00 2.10
628 629 1.530655 CCCGGCCAAAGGTGTTTCT 60.531 57.895 2.24 0.00 0.00 2.52
629 630 1.110518 TTCCCGGCCAAAGGTGTTTC 61.111 55.000 2.24 0.00 0.00 2.78
630 631 0.471022 ATTCCCGGCCAAAGGTGTTT 60.471 50.000 2.24 0.00 0.00 2.83
631 632 0.406361 TATTCCCGGCCAAAGGTGTT 59.594 50.000 2.24 0.00 0.00 3.32
632 633 0.323087 GTATTCCCGGCCAAAGGTGT 60.323 55.000 2.24 0.00 0.00 4.16
633 634 1.035385 GGTATTCCCGGCCAAAGGTG 61.035 60.000 2.24 0.00 0.00 4.00
634 635 1.305287 GGTATTCCCGGCCAAAGGT 59.695 57.895 2.24 0.00 0.00 3.50
635 636 1.455032 GGGTATTCCCGGCCAAAGG 60.455 63.158 2.24 0.00 44.74 3.11
636 637 4.252983 GGGTATTCCCGGCCAAAG 57.747 61.111 2.24 0.00 44.74 2.77
645 646 1.677820 CCAGTTGTGTCGGGGTATTCC 60.678 57.143 0.00 0.00 0.00 3.01
646 647 1.002773 ACCAGTTGTGTCGGGGTATTC 59.997 52.381 0.00 0.00 0.00 1.75
647 648 1.002773 GACCAGTTGTGTCGGGGTATT 59.997 52.381 0.00 0.00 30.55 1.89
648 649 0.611714 GACCAGTTGTGTCGGGGTAT 59.388 55.000 0.00 0.00 30.55 2.73
649 650 1.474332 GGACCAGTTGTGTCGGGGTA 61.474 60.000 0.00 0.00 33.46 3.69
650 651 2.814835 GGACCAGTTGTGTCGGGGT 61.815 63.158 0.00 0.00 33.46 4.95
651 652 2.032071 GGACCAGTTGTGTCGGGG 59.968 66.667 0.00 0.00 33.46 5.73
652 653 1.004918 GAGGACCAGTTGTGTCGGG 60.005 63.158 0.00 0.00 33.46 5.14
653 654 1.004918 GGAGGACCAGTTGTGTCGG 60.005 63.158 0.00 0.00 35.97 4.79
654 655 1.372997 CGGAGGACCAGTTGTGTCG 60.373 63.158 0.00 0.00 35.59 4.35
655 656 1.668151 GCGGAGGACCAGTTGTGTC 60.668 63.158 0.00 0.00 35.59 3.67
656 657 2.100879 GAGCGGAGGACCAGTTGTGT 62.101 60.000 0.00 0.00 35.59 3.72
657 658 1.374758 GAGCGGAGGACCAGTTGTG 60.375 63.158 0.00 0.00 35.59 3.33
658 659 2.932234 CGAGCGGAGGACCAGTTGT 61.932 63.158 0.00 0.00 35.59 3.32
659 660 2.125912 CGAGCGGAGGACCAGTTG 60.126 66.667 0.00 0.00 35.59 3.16
660 661 4.070552 GCGAGCGGAGGACCAGTT 62.071 66.667 0.00 0.00 35.59 3.16
739 741 1.460504 ATGAGCGAACAGACCGTAGA 58.539 50.000 0.00 0.00 0.00 2.59
761 763 0.774908 CAAAGGTGGGGTGAGGGTAA 59.225 55.000 0.00 0.00 0.00 2.85
767 769 1.650242 TTGAGGCAAAGGTGGGGTGA 61.650 55.000 0.00 0.00 0.00 4.02
768 770 1.152567 TTGAGGCAAAGGTGGGGTG 60.153 57.895 0.00 0.00 0.00 4.61
771 794 0.469892 AAGGTTGAGGCAAAGGTGGG 60.470 55.000 0.00 0.00 0.00 4.61
803 829 4.175787 AGTTCAACTATTCGAGTCGCTT 57.824 40.909 7.92 0.00 37.44 4.68
859 885 2.513897 GCCGATCGGGGAAGTTGG 60.514 66.667 33.98 7.06 35.78 3.77
923 951 3.052455 TCAAGAGTTGTGTGTGTGTGT 57.948 42.857 0.00 0.00 0.00 3.72
924 952 4.621068 AATCAAGAGTTGTGTGTGTGTG 57.379 40.909 0.00 0.00 0.00 3.82
957 1255 3.067833 GTGCTGGTTAGAGAAGTGTTCC 58.932 50.000 0.00 0.00 0.00 3.62
962 1260 0.037232 GGCGTGCTGGTTAGAGAAGT 60.037 55.000 0.00 0.00 0.00 3.01
1042 1340 2.437359 CTTTGGAGGCGGCTGAGG 60.437 66.667 19.63 0.00 0.00 3.86
1066 1364 1.793258 CGGAAGATATGCAGGAGCTG 58.207 55.000 0.00 0.00 42.74 4.24
1139 1437 2.090524 GGCAGCTGAATTTGCGCAC 61.091 57.895 20.43 0.00 41.17 5.34
1141 1439 2.507769 GGGCAGCTGAATTTGCGC 60.508 61.111 20.43 6.25 44.21 6.09
1278 1576 6.126863 TGTTCTTGGAAGGTATCAAGACAT 57.873 37.500 5.40 0.00 45.95 3.06
1455 1753 3.554960 CCTTCTCGCAATCGGATGGATTA 60.555 47.826 0.00 0.00 43.52 1.75
1575 1873 5.070001 TCAGTCATCTGGTTAAAAGTTGGG 58.930 41.667 0.00 0.00 41.59 4.12
1650 1948 1.641677 GTGAACGAAGCAAGCACGT 59.358 52.632 10.40 10.40 41.97 4.49
1698 1996 5.039920 TCATGTCCTTTGATATGGAGTGG 57.960 43.478 0.00 0.00 39.73 4.00
1827 2125 5.304357 TCCTTCAATTTTGTCCCCTTTTCTC 59.696 40.000 0.00 0.00 0.00 2.87
1961 2259 2.094026 GGCATCATCAAACAAGGGGAAC 60.094 50.000 0.00 0.00 0.00 3.62
1964 2262 1.856629 AGGCATCATCAAACAAGGGG 58.143 50.000 0.00 0.00 0.00 4.79
2173 2495 7.734924 TTCAGAAAGTACTCTTGTCTACGTA 57.265 36.000 0.00 0.00 33.79 3.57
2289 2612 6.144854 ACAACATGATGAACTTGTTCATTCG 58.855 36.000 24.18 18.40 42.32 3.34
2337 2660 2.422832 CCTGAAGATTTTGCCTCTCTGC 59.577 50.000 0.00 0.00 0.00 4.26
2344 2667 4.240096 CACAATGTCCTGAAGATTTTGCC 58.760 43.478 0.00 0.00 0.00 4.52
2483 2806 4.768968 AGCTTAGGCATCATTGTTCAAACT 59.231 37.500 0.00 0.00 41.70 2.66
2585 2911 7.249186 TGTTTGTTACAACAGTAGCGTTTAT 57.751 32.000 0.00 0.00 40.50 1.40
2900 3226 1.334869 CAGGCCAAAGACAAGACACAC 59.665 52.381 5.01 0.00 0.00 3.82
2960 3286 1.276705 TCTACCAAACTGCGCCATGTA 59.723 47.619 4.18 0.00 0.00 2.29
3130 3460 6.443792 CCCAATATAATTTTGCTACGGGAAC 58.556 40.000 0.00 0.00 0.00 3.62
3131 3461 5.536916 CCCCAATATAATTTTGCTACGGGAA 59.463 40.000 0.00 0.00 28.62 3.97
3153 3484 9.668497 AGAAAACTTATAATGTGTTAGACTCCC 57.332 33.333 0.00 0.00 0.00 4.30
3206 3856 8.696374 TGGATCCTACTAGTACAAGATTGAAAG 58.304 37.037 14.23 0.00 0.00 2.62
3217 3867 4.040376 CGCGTTTTGGATCCTACTAGTAC 58.960 47.826 14.23 1.03 0.00 2.73
3218 3868 3.947196 TCGCGTTTTGGATCCTACTAGTA 59.053 43.478 14.23 1.89 0.00 1.82
3219 3869 2.756760 TCGCGTTTTGGATCCTACTAGT 59.243 45.455 14.23 0.00 0.00 2.57
3220 3870 3.431922 TCGCGTTTTGGATCCTACTAG 57.568 47.619 14.23 3.10 0.00 2.57
3221 3871 3.382227 TCATCGCGTTTTGGATCCTACTA 59.618 43.478 14.23 0.00 0.00 1.82
3259 3909 2.877097 TAACCAGAAGCATGGCAGAA 57.123 45.000 0.00 0.00 44.80 3.02
3278 3981 2.676076 GGCACAAACATTTCGCTTCAT 58.324 42.857 0.00 0.00 0.00 2.57
3321 4024 1.284657 CGGTGATGATGACTGACTGC 58.715 55.000 0.00 0.00 0.00 4.40
3341 4044 2.103373 TCTCAGTATCACAGCTCCCAC 58.897 52.381 0.00 0.00 0.00 4.61
3540 4248 3.878519 CGCGAGGGAGACGAGGTC 61.879 72.222 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.