Multiple sequence alignment - TraesCS1B01G175700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G175700 chr1B 100.000 3060 0 0 440 3499 317322517 317319458 0.000000e+00 5651.0
1 TraesCS1B01G175700 chr1B 100.000 159 0 0 1 159 317322956 317322798 9.500000e-76 294.0
2 TraesCS1B01G175700 chr1B 87.903 124 10 4 3362 3482 623822203 623822082 1.310000e-29 141.0
3 TraesCS1B01G175700 chr1A 91.288 2399 140 28 505 2870 284914521 284912159 0.000000e+00 3208.0
4 TraesCS1B01G175700 chr1A 85.195 385 33 7 2935 3299 284912028 284911648 1.190000e-99 374.0
5 TraesCS1B01G175700 chr1A 94.969 159 8 0 1 159 284915116 284914958 2.090000e-62 250.0
6 TraesCS1B01G175700 chr1A 89.286 56 5 1 3302 3356 344574860 344574915 6.270000e-08 69.4
7 TraesCS1B01G175700 chr1A 89.286 56 5 1 3302 3356 465628354 465628409 6.270000e-08 69.4
8 TraesCS1B01G175700 chr1D 90.553 2170 124 29 880 2997 220890321 220888181 0.000000e+00 2796.0
9 TraesCS1B01G175700 chr1D 94.318 440 19 4 445 881 220890839 220890403 0.000000e+00 669.0
10 TraesCS1B01G175700 chr1D 97.500 160 3 1 1 159 220891085 220890926 4.450000e-69 272.0
11 TraesCS1B01G175700 chr1D 83.333 264 25 5 3065 3310 220888133 220887871 3.510000e-55 226.0
12 TraesCS1B01G175700 chr4B 79.515 371 64 6 454 818 588068599 588068235 1.610000e-63 254.0
13 TraesCS1B01G175700 chrUn 78.878 303 51 10 1625 1916 109025523 109025823 3.560000e-45 193.0
14 TraesCS1B01G175700 chr5A 78.548 303 52 12 1625 1916 704345975 704345675 1.660000e-43 187.0
15 TraesCS1B01G175700 chr7D 88.148 135 14 1 3313 3445 91339845 91339979 3.610000e-35 159.0
16 TraesCS1B01G175700 chr7D 88.034 117 12 2 3334 3449 533120538 533120653 1.690000e-28 137.0
17 TraesCS1B01G175700 chr6B 95.789 95 4 0 3360 3454 144751848 144751942 1.680000e-33 154.0
18 TraesCS1B01G175700 chr6B 94.000 50 3 0 3309 3358 366154853 366154804 3.750000e-10 76.8
19 TraesCS1B01G175700 chr6B 89.286 56 5 1 3302 3356 175480420 175480365 6.270000e-08 69.4
20 TraesCS1B01G175700 chr6B 89.286 56 5 1 3302 3356 278357536 278357481 6.270000e-08 69.4
21 TraesCS1B01G175700 chr6D 90.517 116 9 2 3334 3449 439964787 439964900 6.050000e-33 152.0
22 TraesCS1B01G175700 chr3B 87.218 133 15 2 3313 3443 207226090 207226222 2.180000e-32 150.0
23 TraesCS1B01G175700 chr3D 91.743 109 3 5 3360 3462 410670149 410670041 2.810000e-31 147.0
24 TraesCS1B01G175700 chr7A 85.417 144 16 5 3160 3302 700609220 700609081 1.010000e-30 145.0
25 TraesCS1B01G175700 chr7A 85.417 144 15 5 3160 3302 700632459 700632321 1.010000e-30 145.0
26 TraesCS1B01G175700 chr7A 85.417 144 15 5 3160 3302 700650076 700649938 1.010000e-30 145.0
27 TraesCS1B01G175700 chr4D 96.552 87 3 0 3360 3446 468208721 468208807 1.010000e-30 145.0
28 TraesCS1B01G175700 chr4D 89.908 109 9 1 3360 3466 58643832 58643940 4.710000e-29 139.0
29 TraesCS1B01G175700 chr5D 91.304 69 3 3 3388 3456 36758131 36758066 1.340000e-14 91.6
30 TraesCS1B01G175700 chr7B 86.154 65 6 3 3295 3356 532903304 532903368 2.250000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G175700 chr1B 317319458 317322956 3498 True 2972.500000 5651 100.000 1 3499 2 chr1B.!!$R2 3498
1 TraesCS1B01G175700 chr1A 284911648 284915116 3468 True 1277.333333 3208 90.484 1 3299 3 chr1A.!!$R1 3298
2 TraesCS1B01G175700 chr1D 220887871 220891085 3214 True 990.750000 2796 91.426 1 3310 4 chr1D.!!$R1 3309

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 1104 1.291132 GTCGTGGGCAGAGCTTTATC 58.709 55.0 0.0 0.0 0.0 1.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2711 3119 0.696485 GGGGTACATAGGGCTGGGAA 60.696 60.0 0.0 0.0 0.0 3.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 154 4.680237 TCGCACCGAGCAACCCAG 62.680 66.667 0.95 0.00 46.13 4.45
657 949 2.616842 GTTGGTCTGGTTTCGTTGATGT 59.383 45.455 0.00 0.00 0.00 3.06
762 1054 4.387862 CGGAAGGTATTTGCGGTATCATAC 59.612 45.833 0.00 0.00 45.53 2.39
812 1104 1.291132 GTCGTGGGCAGAGCTTTATC 58.709 55.000 0.00 0.00 0.00 1.75
871 1167 4.755123 GGTGGATAGGTTTACATTCGATGG 59.245 45.833 0.00 0.00 33.60 3.51
876 1172 7.876068 TGGATAGGTTTACATTCGATGGTTATC 59.124 37.037 0.00 0.00 33.60 1.75
915 1294 7.209475 TCGTTATCATGACAAATATCAGAGCA 58.791 34.615 0.00 0.00 30.46 4.26
920 1299 4.824479 TGACAAATATCAGAGCAGTGGA 57.176 40.909 0.00 0.00 0.00 4.02
962 1341 2.558359 GGCTGTAGTGTCAAGCCATTTT 59.442 45.455 8.19 0.00 44.42 1.82
964 1343 3.568538 CTGTAGTGTCAAGCCATTTTGC 58.431 45.455 0.00 0.00 0.00 3.68
980 1359 8.145122 AGCCATTTTGCTAGTAGTAGTATCTTC 58.855 37.037 6.47 0.00 40.56 2.87
1048 1427 2.100584 TGGTTTTGCCATGTCAACTGTC 59.899 45.455 0.00 0.00 43.61 3.51
1073 1452 8.607713 TCTTTGTATGGGTGATTAGTTAGGAAA 58.392 33.333 0.00 0.00 0.00 3.13
1094 1473 8.126700 AGGAAACATTAGTTACTTGTTTGAACG 58.873 33.333 16.78 0.00 42.07 3.95
1099 1478 9.263538 ACATTAGTTACTTGTTTGAACGTGATA 57.736 29.630 0.00 0.00 0.00 2.15
1114 1493 5.272283 ACGTGATATGGTCGAGGTTATTT 57.728 39.130 0.00 0.00 0.00 1.40
1156 1535 7.056006 TGCATCCAGTCATGTTAGTTATTGAT 58.944 34.615 0.00 0.00 0.00 2.57
1164 1543 8.834465 AGTCATGTTAGTTATTGATCTTCATGC 58.166 33.333 0.00 0.00 32.89 4.06
1182 1561 3.296322 TGCTTTTTGTTCTTATGCGGG 57.704 42.857 0.00 0.00 0.00 6.13
1385 1764 5.506317 GCGCAGGTGCTTATTCTTTTCATAT 60.506 40.000 0.30 0.00 39.32 1.78
1389 1768 8.571336 GCAGGTGCTTATTCTTTTCATATATGT 58.429 33.333 12.42 0.00 38.21 2.29
1440 1827 7.706281 TTTTGTATGTTGGCACATAAGTTTG 57.294 32.000 10.10 0.00 45.63 2.93
1457 1844 6.885735 AAGTTTGTGTTGTGCTTAAACATC 57.114 33.333 0.00 0.00 39.57 3.06
1468 1855 3.995705 TGCTTAAACATCTGCATTTTGGC 59.004 39.130 0.00 0.00 0.00 4.52
1469 1856 3.061161 GCTTAAACATCTGCATTTTGGCG 59.939 43.478 0.00 0.00 36.28 5.69
1471 1858 3.932545 AAACATCTGCATTTTGGCGTA 57.067 38.095 0.00 0.00 36.28 4.42
1491 1878 5.106442 CGTATATGTGGAAACAGTGCTACA 58.894 41.667 0.00 0.00 44.46 2.74
1509 1896 8.047933 GTGCTACACACGTTACTATTATTCTC 57.952 38.462 0.00 0.00 40.07 2.87
1589 1976 5.478332 GGGATGATAGTGAATTTGGAATCCC 59.522 44.000 0.00 0.00 42.84 3.85
1590 1977 5.182001 GGATGATAGTGAATTTGGAATCCCG 59.818 44.000 0.00 0.00 34.29 5.14
1592 1979 4.881273 TGATAGTGAATTTGGAATCCCGTG 59.119 41.667 0.00 0.00 34.29 4.94
1593 1980 3.433306 AGTGAATTTGGAATCCCGTGA 57.567 42.857 0.00 0.00 34.29 4.35
1594 1981 3.081804 AGTGAATTTGGAATCCCGTGAC 58.918 45.455 0.00 0.00 34.29 3.67
1599 1986 0.679640 TTGGAATCCCGTGACCATGC 60.680 55.000 0.00 0.00 34.29 4.06
1710 2097 5.568620 AAAGAGTAGGAGTGAACACCATT 57.431 39.130 1.11 0.00 0.00 3.16
1778 2165 6.433847 TCAGTTTCTGAATCCTAAAGGTGA 57.566 37.500 0.00 0.00 37.57 4.02
1835 2222 7.829706 AGATAAGTTTTCCACTTCCTTACATCC 59.170 37.037 0.00 0.00 42.62 3.51
1887 2274 6.007485 TCAATTGGTGCTAATACATGGGTA 57.993 37.500 5.42 0.00 0.00 3.69
1965 2352 3.191078 TGTTTGCCCTTGGTCATTTTG 57.809 42.857 0.00 0.00 0.00 2.44
1966 2353 2.503356 TGTTTGCCCTTGGTCATTTTGT 59.497 40.909 0.00 0.00 0.00 2.83
1968 2355 3.922171 TTGCCCTTGGTCATTTTGTTT 57.078 38.095 0.00 0.00 0.00 2.83
1969 2356 3.191078 TGCCCTTGGTCATTTTGTTTG 57.809 42.857 0.00 0.00 0.00 2.93
1970 2357 2.158842 TGCCCTTGGTCATTTTGTTTGG 60.159 45.455 0.00 0.00 0.00 3.28
1971 2358 2.158827 GCCCTTGGTCATTTTGTTTGGT 60.159 45.455 0.00 0.00 0.00 3.67
1972 2359 3.684130 GCCCTTGGTCATTTTGTTTGGTT 60.684 43.478 0.00 0.00 0.00 3.67
1973 2360 4.522114 CCCTTGGTCATTTTGTTTGGTTT 58.478 39.130 0.00 0.00 0.00 3.27
1974 2361 4.946772 CCCTTGGTCATTTTGTTTGGTTTT 59.053 37.500 0.00 0.00 0.00 2.43
1975 2362 5.065859 CCCTTGGTCATTTTGTTTGGTTTTC 59.934 40.000 0.00 0.00 0.00 2.29
1976 2363 5.879777 CCTTGGTCATTTTGTTTGGTTTTCT 59.120 36.000 0.00 0.00 0.00 2.52
1977 2364 7.044798 CCTTGGTCATTTTGTTTGGTTTTCTA 58.955 34.615 0.00 0.00 0.00 2.10
1978 2365 7.011016 CCTTGGTCATTTTGTTTGGTTTTCTAC 59.989 37.037 0.00 0.00 0.00 2.59
1994 2381 7.886338 GGTTTTCTACCTCATTCATGTTCTTT 58.114 34.615 0.00 0.00 44.10 2.52
2004 2391 7.393234 CCTCATTCATGTTCTTTTACCCACTTA 59.607 37.037 0.00 0.00 0.00 2.24
2011 2398 9.191995 CATGTTCTTTTACCCACTTACAAATTC 57.808 33.333 0.00 0.00 0.00 2.17
2053 2440 4.589216 ACACATGTCTTTTGTCCATTGG 57.411 40.909 0.00 0.00 0.00 3.16
2064 2451 7.595130 GTCTTTTGTCCATTGGAATAGTTGAAC 59.405 37.037 7.05 0.00 31.38 3.18
2066 2453 4.647611 TGTCCATTGGAATAGTTGAACGT 58.352 39.130 7.05 0.00 31.38 3.99
2068 2455 5.049060 TGTCCATTGGAATAGTTGAACGTTG 60.049 40.000 5.00 0.00 31.38 4.10
2071 2458 5.390613 CATTGGAATAGTTGAACGTTGTCC 58.609 41.667 5.00 1.47 0.00 4.02
2072 2459 3.404899 TGGAATAGTTGAACGTTGTCCC 58.595 45.455 5.00 0.00 0.00 4.46
2075 2462 4.868734 GGAATAGTTGAACGTTGTCCCTAG 59.131 45.833 5.00 0.00 0.00 3.02
2077 2464 5.934402 ATAGTTGAACGTTGTCCCTAGAT 57.066 39.130 5.00 0.00 0.00 1.98
2102 2491 6.942532 AGTTTCTTTTCTGATGCTTGTGTA 57.057 33.333 0.00 0.00 0.00 2.90
2198 2595 9.823647 CAACTTGGTATGTCTCTATATTCAGTT 57.176 33.333 0.00 0.00 0.00 3.16
2244 2641 8.870160 TCCAATTCAAAGTTTACAGTGAAATG 57.130 30.769 0.00 0.00 33.93 2.32
2280 2684 0.400213 TAGTGAGTGTTGCCCCCTTG 59.600 55.000 0.00 0.00 0.00 3.61
2508 2912 2.785681 GCAGAGTCGTGATTTTGATGCG 60.786 50.000 0.00 0.00 0.00 4.73
2571 2978 2.640332 AGAGACCTCCCCTTTCAAGAAC 59.360 50.000 0.00 0.00 0.00 3.01
2708 3116 9.612620 ATTCTCAAATCGTGTCTTTAAATGTTC 57.387 29.630 0.00 0.00 0.00 3.18
2711 3119 7.881142 TCAAATCGTGTCTTTAAATGTTCCAT 58.119 30.769 0.00 0.00 0.00 3.41
2741 3150 4.844085 CCCTATGTACCCCATCATAACTGA 59.156 45.833 0.00 0.00 34.86 3.41
2832 3243 2.022764 CATTGATGCTGGTACGGTGA 57.977 50.000 0.00 0.00 36.83 4.02
2833 3244 2.564771 CATTGATGCTGGTACGGTGAT 58.435 47.619 0.00 0.00 36.83 3.06
2845 3256 4.964593 GGTACGGTGATACCAATGGTTAT 58.035 43.478 11.41 1.97 43.69 1.89
2850 3261 6.752168 ACGGTGATACCAATGGTTATACTAC 58.248 40.000 11.41 2.05 38.47 2.73
2912 3352 4.108570 ACACTGATATGTAGGGGTGGAAA 58.891 43.478 0.00 0.00 0.00 3.13
2917 3357 4.480537 TGATATGTAGGGGTGGAAAATGGT 59.519 41.667 0.00 0.00 0.00 3.55
2922 3362 0.686441 GGGGTGGAAAATGGTAGGGC 60.686 60.000 0.00 0.00 0.00 5.19
3015 3539 5.993055 TGCCTTCATATCTGAAACATCTGA 58.007 37.500 0.00 0.00 40.78 3.27
3017 3541 6.885918 TGCCTTCATATCTGAAACATCTGAAA 59.114 34.615 0.00 0.00 40.78 2.69
3028 3552 5.885352 TGAAACATCTGAAACTGAAACTGGA 59.115 36.000 0.00 0.00 0.00 3.86
3029 3553 6.376864 TGAAACATCTGAAACTGAAACTGGAA 59.623 34.615 0.00 0.00 0.00 3.53
3030 3554 6.966534 AACATCTGAAACTGAAACTGGAAT 57.033 33.333 0.00 0.00 0.00 3.01
3032 3556 7.678947 ACATCTGAAACTGAAACTGGAATAG 57.321 36.000 0.00 0.00 0.00 1.73
3035 3559 8.786898 CATCTGAAACTGAAACTGGAATAGAAA 58.213 33.333 0.00 0.00 0.00 2.52
3036 3560 8.924511 TCTGAAACTGAAACTGGAATAGAAAT 57.075 30.769 0.00 0.00 0.00 2.17
3037 3561 8.786898 TCTGAAACTGAAACTGGAATAGAAATG 58.213 33.333 0.00 0.00 0.00 2.32
3040 3564 8.477419 AAACTGAAACTGGAATAGAAATGGAA 57.523 30.769 0.00 0.00 0.00 3.53
3041 3565 7.693969 ACTGAAACTGGAATAGAAATGGAAG 57.306 36.000 0.00 0.00 0.00 3.46
3322 3864 8.888579 ATTTTGTACTATCTTGTATTCCCTCG 57.111 34.615 0.00 0.00 0.00 4.63
3323 3865 6.401047 TTGTACTATCTTGTATTCCCTCGG 57.599 41.667 0.00 0.00 0.00 4.63
3324 3866 5.452255 TGTACTATCTTGTATTCCCTCGGT 58.548 41.667 0.00 0.00 0.00 4.69
3325 3867 5.895534 TGTACTATCTTGTATTCCCTCGGTT 59.104 40.000 0.00 0.00 0.00 4.44
3326 3868 5.532664 ACTATCTTGTATTCCCTCGGTTC 57.467 43.478 0.00 0.00 0.00 3.62
3327 3869 5.209659 ACTATCTTGTATTCCCTCGGTTCT 58.790 41.667 0.00 0.00 0.00 3.01
3328 3870 5.661759 ACTATCTTGTATTCCCTCGGTTCTT 59.338 40.000 0.00 0.00 0.00 2.52
3329 3871 6.837568 ACTATCTTGTATTCCCTCGGTTCTTA 59.162 38.462 0.00 0.00 0.00 2.10
3330 3872 6.555463 ATCTTGTATTCCCTCGGTTCTTAA 57.445 37.500 0.00 0.00 0.00 1.85
3331 3873 6.363167 TCTTGTATTCCCTCGGTTCTTAAA 57.637 37.500 0.00 0.00 0.00 1.52
3332 3874 6.954232 TCTTGTATTCCCTCGGTTCTTAAAT 58.046 36.000 0.00 0.00 0.00 1.40
3333 3875 8.081517 TCTTGTATTCCCTCGGTTCTTAAATA 57.918 34.615 0.00 0.00 0.00 1.40
3334 3876 8.711170 TCTTGTATTCCCTCGGTTCTTAAATAT 58.289 33.333 0.00 0.00 0.00 1.28
3335 3877 9.991906 CTTGTATTCCCTCGGTTCTTAAATATA 57.008 33.333 0.00 0.00 0.00 0.86
3337 3879 9.991906 TGTATTCCCTCGGTTCTTAAATATAAG 57.008 33.333 0.00 0.00 39.97 1.73
3338 3880 9.993454 GTATTCCCTCGGTTCTTAAATATAAGT 57.007 33.333 0.00 0.00 39.65 2.24
3340 3882 7.909485 TCCCTCGGTTCTTAAATATAAGTCT 57.091 36.000 0.00 0.00 39.65 3.24
3341 3883 8.315220 TCCCTCGGTTCTTAAATATAAGTCTT 57.685 34.615 0.00 0.00 39.65 3.01
3342 3884 8.765517 TCCCTCGGTTCTTAAATATAAGTCTTT 58.234 33.333 0.00 0.00 39.65 2.52
3343 3885 8.827677 CCCTCGGTTCTTAAATATAAGTCTTTG 58.172 37.037 0.00 0.00 39.65 2.77
3344 3886 9.379791 CCTCGGTTCTTAAATATAAGTCTTTGT 57.620 33.333 0.00 0.00 39.65 2.83
3367 3909 9.470399 TTGTAGATATTTCACTACCTACACTCA 57.530 33.333 0.00 0.00 37.00 3.41
3368 3910 9.470399 TGTAGATATTTCACTACCTACACTCAA 57.530 33.333 0.00 0.00 38.40 3.02
3373 3915 6.554334 TTTCACTACCTACACTCAAAATGC 57.446 37.500 0.00 0.00 0.00 3.56
3374 3916 5.222079 TCACTACCTACACTCAAAATGCA 57.778 39.130 0.00 0.00 0.00 3.96
3375 3917 5.804639 TCACTACCTACACTCAAAATGCAT 58.195 37.500 0.00 0.00 0.00 3.96
3376 3918 5.874810 TCACTACCTACACTCAAAATGCATC 59.125 40.000 0.00 0.00 0.00 3.91
3377 3919 5.877012 CACTACCTACACTCAAAATGCATCT 59.123 40.000 0.00 0.00 0.00 2.90
3378 3920 7.041721 CACTACCTACACTCAAAATGCATCTA 58.958 38.462 0.00 0.00 0.00 1.98
3379 3921 7.712639 CACTACCTACACTCAAAATGCATCTAT 59.287 37.037 0.00 0.00 0.00 1.98
3380 3922 8.924303 ACTACCTACACTCAAAATGCATCTATA 58.076 33.333 0.00 0.00 0.00 1.31
3381 3923 9.935241 CTACCTACACTCAAAATGCATCTATAT 57.065 33.333 0.00 0.00 0.00 0.86
3383 3925 9.712305 ACCTACACTCAAAATGCATCTATATAC 57.288 33.333 0.00 0.00 0.00 1.47
3384 3926 9.710900 CCTACACTCAAAATGCATCTATATACA 57.289 33.333 0.00 0.00 0.00 2.29
3387 3929 9.224267 ACACTCAAAATGCATCTATATACATCC 57.776 33.333 0.00 0.00 0.00 3.51
3388 3930 8.385858 CACTCAAAATGCATCTATATACATCCG 58.614 37.037 0.00 0.00 0.00 4.18
3389 3931 8.097038 ACTCAAAATGCATCTATATACATCCGT 58.903 33.333 0.00 0.00 0.00 4.69
3390 3932 9.586435 CTCAAAATGCATCTATATACATCCGTA 57.414 33.333 0.00 0.00 0.00 4.02
3394 3936 8.877808 AATGCATCTATATACATCCGTATGTG 57.122 34.615 3.56 0.00 45.99 3.21
3395 3937 6.805713 TGCATCTATATACATCCGTATGTGG 58.194 40.000 3.56 0.00 45.99 4.17
3396 3938 6.379988 TGCATCTATATACATCCGTATGTGGT 59.620 38.462 3.56 0.00 45.99 4.16
3397 3939 7.093509 TGCATCTATATACATCCGTATGTGGTT 60.094 37.037 3.56 0.00 45.99 3.67
3398 3940 7.764443 GCATCTATATACATCCGTATGTGGTTT 59.236 37.037 3.56 0.00 45.99 3.27
3405 3947 6.474140 ACATCCGTATGTGGTTTATAGTGA 57.526 37.500 0.00 0.00 44.79 3.41
3406 3948 6.880484 ACATCCGTATGTGGTTTATAGTGAA 58.120 36.000 0.00 0.00 44.79 3.18
3407 3949 7.332557 ACATCCGTATGTGGTTTATAGTGAAA 58.667 34.615 0.00 0.00 44.79 2.69
3408 3950 7.990886 ACATCCGTATGTGGTTTATAGTGAAAT 59.009 33.333 0.00 0.00 44.79 2.17
3409 3951 8.495949 CATCCGTATGTGGTTTATAGTGAAATC 58.504 37.037 0.00 0.00 0.00 2.17
3410 3952 7.788026 TCCGTATGTGGTTTATAGTGAAATCT 58.212 34.615 0.00 0.00 0.00 2.40
3411 3953 7.924412 TCCGTATGTGGTTTATAGTGAAATCTC 59.076 37.037 0.00 0.00 0.00 2.75
3412 3954 7.926555 CCGTATGTGGTTTATAGTGAAATCTCT 59.073 37.037 0.00 0.00 0.00 3.10
3413 3955 9.961265 CGTATGTGGTTTATAGTGAAATCTCTA 57.039 33.333 0.00 0.00 0.00 2.43
3436 3978 9.507280 TCTACAAAGACTTATATTTACGAACGG 57.493 33.333 0.00 0.00 0.00 4.44
3437 3979 9.507280 CTACAAAGACTTATATTTACGAACGGA 57.493 33.333 0.00 0.00 0.00 4.69
3438 3980 8.403606 ACAAAGACTTATATTTACGAACGGAG 57.596 34.615 0.00 0.00 0.00 4.63
3439 3981 7.490402 ACAAAGACTTATATTTACGAACGGAGG 59.510 37.037 0.00 0.00 0.00 4.30
3440 3982 6.081872 AGACTTATATTTACGAACGGAGGG 57.918 41.667 0.00 0.00 0.00 4.30
3441 3983 5.829924 AGACTTATATTTACGAACGGAGGGA 59.170 40.000 0.00 0.00 0.00 4.20
3442 3984 6.016443 AGACTTATATTTACGAACGGAGGGAG 60.016 42.308 0.00 0.00 0.00 4.30
3443 3985 5.595952 ACTTATATTTACGAACGGAGGGAGT 59.404 40.000 0.00 0.00 0.00 3.85
3444 3986 6.772716 ACTTATATTTACGAACGGAGGGAGTA 59.227 38.462 0.00 0.00 0.00 2.59
3445 3987 5.702349 ATATTTACGAACGGAGGGAGTAG 57.298 43.478 0.00 0.00 0.00 2.57
3446 3988 1.098050 TTACGAACGGAGGGAGTAGC 58.902 55.000 0.00 0.00 0.00 3.58
3447 3989 0.254178 TACGAACGGAGGGAGTAGCT 59.746 55.000 0.00 0.00 0.00 3.32
3448 3990 0.254178 ACGAACGGAGGGAGTAGCTA 59.746 55.000 0.00 0.00 0.00 3.32
3449 3991 1.133853 ACGAACGGAGGGAGTAGCTAT 60.134 52.381 0.00 0.00 0.00 2.97
3450 3992 1.955080 CGAACGGAGGGAGTAGCTATT 59.045 52.381 0.00 0.00 0.00 1.73
3451 3993 2.361438 CGAACGGAGGGAGTAGCTATTT 59.639 50.000 0.00 0.00 0.00 1.40
3452 3994 3.567164 CGAACGGAGGGAGTAGCTATTTA 59.433 47.826 0.00 0.00 0.00 1.40
3453 3995 4.217983 CGAACGGAGGGAGTAGCTATTTAT 59.782 45.833 0.00 0.00 0.00 1.40
3454 3996 5.278858 CGAACGGAGGGAGTAGCTATTTATT 60.279 44.000 0.00 0.00 0.00 1.40
3455 3997 6.496144 AACGGAGGGAGTAGCTATTTATTT 57.504 37.500 0.00 0.00 0.00 1.40
3456 3998 6.496144 ACGGAGGGAGTAGCTATTTATTTT 57.504 37.500 0.00 0.00 0.00 1.82
3457 3999 6.522946 ACGGAGGGAGTAGCTATTTATTTTC 58.477 40.000 0.00 0.00 0.00 2.29
3458 4000 6.326843 ACGGAGGGAGTAGCTATTTATTTTCT 59.673 38.462 0.00 0.00 0.00 2.52
3459 4001 7.147532 ACGGAGGGAGTAGCTATTTATTTTCTT 60.148 37.037 0.00 0.00 0.00 2.52
3460 4002 7.715686 CGGAGGGAGTAGCTATTTATTTTCTTT 59.284 37.037 0.00 0.00 0.00 2.52
3491 4033 4.948341 ATGCTGATGTTATACGTACCCA 57.052 40.909 0.00 0.00 0.00 4.51
3492 4034 4.948341 TGCTGATGTTATACGTACCCAT 57.052 40.909 0.00 0.00 0.00 4.00
3493 4035 5.284861 TGCTGATGTTATACGTACCCATT 57.715 39.130 0.00 0.00 0.00 3.16
3494 4036 5.676552 TGCTGATGTTATACGTACCCATTT 58.323 37.500 0.00 0.00 0.00 2.32
3495 4037 5.756347 TGCTGATGTTATACGTACCCATTTC 59.244 40.000 0.00 0.00 0.00 2.17
3496 4038 5.107607 GCTGATGTTATACGTACCCATTTCG 60.108 44.000 0.00 0.00 0.00 3.46
3497 4039 6.146601 TGATGTTATACGTACCCATTTCGA 57.853 37.500 0.00 0.00 0.00 3.71
3498 4040 6.571605 TGATGTTATACGTACCCATTTCGAA 58.428 36.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 97 4.042271 GGTTTTAACCCCAGGAGAATCA 57.958 45.455 0.00 0.00 43.43 2.57
641 933 2.254546 AGCACATCAACGAAACCAGA 57.745 45.000 0.00 0.00 0.00 3.86
657 949 0.175531 TCCAGATTCGATCGCAAGCA 59.824 50.000 11.09 0.00 37.18 3.91
720 1012 7.763071 ACCTTCCGTAAATGAAATCACTACTAC 59.237 37.037 0.00 0.00 0.00 2.73
721 1013 7.844009 ACCTTCCGTAAATGAAATCACTACTA 58.156 34.615 0.00 0.00 0.00 1.82
722 1014 6.708285 ACCTTCCGTAAATGAAATCACTACT 58.292 36.000 0.00 0.00 0.00 2.57
756 1048 1.794714 AAGCCCACCTCTCGTATGAT 58.205 50.000 0.00 0.00 0.00 2.45
762 1054 1.302832 AAGCAAAGCCCACCTCTCG 60.303 57.895 0.00 0.00 0.00 4.04
825 1117 5.884792 CCCATTTCTGAGCTTAGACTTCAAT 59.115 40.000 7.87 2.64 0.00 2.57
829 1121 4.566488 CCACCCATTTCTGAGCTTAGACTT 60.566 45.833 7.87 0.00 0.00 3.01
839 1135 4.946160 AAACCTATCCACCCATTTCTGA 57.054 40.909 0.00 0.00 0.00 3.27
915 1294 2.362077 GTGCTGGAACAAATTGTCCACT 59.638 45.455 11.42 0.00 38.70 4.00
920 1299 2.033299 CGACTGTGCTGGAACAAATTGT 59.967 45.455 0.00 0.00 38.70 2.71
962 1341 9.205719 CACTAATCGAAGATACTACTACTAGCA 57.794 37.037 0.00 0.00 45.12 3.49
964 1343 8.658609 GCCACTAATCGAAGATACTACTACTAG 58.341 40.741 0.00 0.00 45.12 2.57
980 1359 1.134995 TGTCTGCTGAGCCACTAATCG 60.135 52.381 0.23 0.00 0.00 3.34
1043 1422 6.374417 ACTAATCACCCATACAAAGACAGT 57.626 37.500 0.00 0.00 0.00 3.55
1048 1427 8.674607 GTTTCCTAACTAATCACCCATACAAAG 58.325 37.037 0.00 0.00 0.00 2.77
1073 1452 7.542534 TCACGTTCAAACAAGTAACTAATGT 57.457 32.000 0.00 0.00 0.00 2.71
1094 1473 5.696724 CAGGAAATAACCTCGACCATATCAC 59.303 44.000 0.00 0.00 38.32 3.06
1099 1478 3.775316 AGACAGGAAATAACCTCGACCAT 59.225 43.478 0.00 0.00 38.32 3.55
1114 1493 2.099141 GCAACTGCACATAGACAGGA 57.901 50.000 0.00 0.00 41.59 3.86
1156 1535 5.858049 CGCATAAGAACAAAAAGCATGAAGA 59.142 36.000 0.00 0.00 0.00 2.87
1164 1543 2.231235 AGGCCCGCATAAGAACAAAAAG 59.769 45.455 0.00 0.00 0.00 2.27
1168 1547 0.618458 AGAGGCCCGCATAAGAACAA 59.382 50.000 0.00 0.00 0.00 2.83
1182 1561 3.877508 ACAAACAACAACAGAGTAGAGGC 59.122 43.478 0.00 0.00 0.00 4.70
1416 1803 7.223582 CACAAACTTATGTGCCAACATACAAAA 59.776 33.333 0.00 0.00 46.56 2.44
1417 1804 6.699204 CACAAACTTATGTGCCAACATACAAA 59.301 34.615 0.00 0.00 46.56 2.83
1418 1805 6.212235 CACAAACTTATGTGCCAACATACAA 58.788 36.000 0.00 0.00 46.56 2.41
1431 1818 7.748031 TGTTTAAGCACAACACAAACTTATG 57.252 32.000 0.00 0.00 31.85 1.90
1439 1826 3.379688 TGCAGATGTTTAAGCACAACACA 59.620 39.130 0.00 0.00 36.97 3.72
1440 1827 3.963665 TGCAGATGTTTAAGCACAACAC 58.036 40.909 0.00 0.00 36.97 3.32
1457 1844 3.314913 TCCACATATACGCCAAAATGCAG 59.685 43.478 0.00 0.00 0.00 4.41
1468 1855 5.005394 GTGTAGCACTGTTTCCACATATACG 59.995 44.000 0.00 0.00 30.39 3.06
1469 1856 5.872617 TGTGTAGCACTGTTTCCACATATAC 59.127 40.000 0.90 0.00 35.11 1.47
1471 1858 4.695455 GTGTGTAGCACTGTTTCCACATAT 59.305 41.667 0.00 0.00 44.41 1.78
1557 1944 7.503566 CCAAATTCACTATCATCCCACAAGTAT 59.496 37.037 0.00 0.00 0.00 2.12
1559 1946 5.653769 CCAAATTCACTATCATCCCACAAGT 59.346 40.000 0.00 0.00 0.00 3.16
1561 1948 5.825532 TCCAAATTCACTATCATCCCACAA 58.174 37.500 0.00 0.00 0.00 3.33
1562 1949 5.449297 TCCAAATTCACTATCATCCCACA 57.551 39.130 0.00 0.00 0.00 4.17
1571 1958 4.881850 GTCACGGGATTCCAAATTCACTAT 59.118 41.667 4.80 0.00 0.00 2.12
1599 1986 6.173339 ACACCAACACAGAGACCATATTTAG 58.827 40.000 0.00 0.00 0.00 1.85
1611 1998 3.964688 TCTTCTTCCTACACCAACACAGA 59.035 43.478 0.00 0.00 0.00 3.41
1710 2097 2.758979 GTTGACCTCTTCGATACCAGGA 59.241 50.000 0.00 0.00 0.00 3.86
1778 2165 9.239551 GAACTGAGTTTTATTGTAAAGGGGTAT 57.760 33.333 0.00 0.00 0.00 2.73
1835 2222 2.099098 ACTGCAAGGAAACCAAGAAACG 59.901 45.455 0.00 0.00 39.30 3.60
1866 2253 6.013554 ACTACCCATGTATTAGCACCAATT 57.986 37.500 0.00 0.00 0.00 2.32
1972 2359 9.010029 GGTAAAAGAACATGAATGAGGTAGAAA 57.990 33.333 0.00 0.00 0.00 2.52
1973 2360 7.610305 GGGTAAAAGAACATGAATGAGGTAGAA 59.390 37.037 0.00 0.00 0.00 2.10
1974 2361 7.110155 GGGTAAAAGAACATGAATGAGGTAGA 58.890 38.462 0.00 0.00 0.00 2.59
1975 2362 6.884295 TGGGTAAAAGAACATGAATGAGGTAG 59.116 38.462 0.00 0.00 0.00 3.18
1976 2363 6.657541 GTGGGTAAAAGAACATGAATGAGGTA 59.342 38.462 0.00 0.00 0.00 3.08
1977 2364 5.476945 GTGGGTAAAAGAACATGAATGAGGT 59.523 40.000 0.00 0.00 0.00 3.85
1978 2365 5.711976 AGTGGGTAAAAGAACATGAATGAGG 59.288 40.000 0.00 0.00 0.00 3.86
1979 2366 6.824305 AGTGGGTAAAAGAACATGAATGAG 57.176 37.500 0.00 0.00 0.00 2.90
1994 2381 3.189702 GCTGCGAATTTGTAAGTGGGTAA 59.810 43.478 0.00 0.00 0.00 2.85
2004 2391 6.620678 ACATACAAAATAGCTGCGAATTTGT 58.379 32.000 24.90 24.90 44.03 2.83
2011 2398 5.732647 GTGTACAACATACAAAATAGCTGCG 59.267 40.000 0.00 0.00 0.00 5.18
2042 2429 5.533154 ACGTTCAACTATTCCAATGGACAAA 59.467 36.000 0.00 0.00 0.00 2.83
2053 2440 5.717119 TCTAGGGACAACGTTCAACTATTC 58.283 41.667 0.00 0.00 0.00 1.75
2064 2451 7.603024 AGAAAAGAAACTAATCTAGGGACAACG 59.397 37.037 0.00 0.00 0.00 4.10
2066 2453 8.656806 TCAGAAAAGAAACTAATCTAGGGACAA 58.343 33.333 0.00 0.00 0.00 3.18
2068 2455 9.103861 CATCAGAAAAGAAACTAATCTAGGGAC 57.896 37.037 0.00 0.00 0.00 4.46
2071 2458 8.729805 AGCATCAGAAAAGAAACTAATCTAGG 57.270 34.615 0.00 0.00 0.00 3.02
2072 2459 9.985318 CAAGCATCAGAAAAGAAACTAATCTAG 57.015 33.333 0.00 0.00 0.00 2.43
2075 2462 8.078596 ACACAAGCATCAGAAAAGAAACTAATC 58.921 33.333 0.00 0.00 0.00 1.75
2077 2464 7.333528 ACACAAGCATCAGAAAAGAAACTAA 57.666 32.000 0.00 0.00 0.00 2.24
2207 2604 7.460214 ACTTTGAATTGGATATGTAGGGGTA 57.540 36.000 0.00 0.00 0.00 3.69
2208 2605 6.341408 ACTTTGAATTGGATATGTAGGGGT 57.659 37.500 0.00 0.00 0.00 4.95
2209 2606 7.660030 AAACTTTGAATTGGATATGTAGGGG 57.340 36.000 0.00 0.00 0.00 4.79
2210 2607 9.184523 TGTAAACTTTGAATTGGATATGTAGGG 57.815 33.333 0.00 0.00 0.00 3.53
2249 2646 5.293569 GCAACACTCACTAGTTTTGTAGTGT 59.706 40.000 14.36 14.36 46.84 3.55
2250 2647 8.156720 GGGCAACACTCACTAGTTTTGTAGTG 62.157 46.154 13.47 13.47 42.75 2.74
2251 2648 4.814771 GGCAACACTCACTAGTTTTGTAGT 59.185 41.667 0.00 0.00 42.75 2.73
2252 2649 4.213482 GGGCAACACTCACTAGTTTTGTAG 59.787 45.833 0.00 0.00 42.75 2.74
2270 2674 4.409257 AAAAAGGCAAGGGGGCAA 57.591 50.000 0.00 0.00 46.44 4.52
2508 2912 4.976224 AACCCTTCACAACAGTAAACAC 57.024 40.909 0.00 0.00 0.00 3.32
2571 2978 4.192317 GGCACAAATAAGGTAGGTCAGAG 58.808 47.826 0.00 0.00 0.00 3.35
2708 3116 1.073923 GGTACATAGGGCTGGGAATGG 59.926 57.143 0.00 0.00 0.00 3.16
2711 3119 0.696485 GGGGTACATAGGGCTGGGAA 60.696 60.000 0.00 0.00 0.00 3.97
2741 3150 6.891361 TCACAGATCCATGGACAAAACAATAT 59.109 34.615 18.99 0.00 0.00 1.28
2787 3198 7.307694 CAATTTTACAGTGCTGATAAGCTCAA 58.692 34.615 3.06 0.00 32.14 3.02
2826 3237 5.881923 AGTATAACCATTGGTATCACCGT 57.118 39.130 9.20 0.00 42.58 4.83
2827 3238 6.989659 AGTAGTATAACCATTGGTATCACCG 58.010 40.000 9.20 0.00 42.58 4.94
2828 3239 7.660208 CCAAGTAGTATAACCATTGGTATCACC 59.340 40.741 9.20 0.00 39.22 4.02
2829 3240 8.208903 ACCAAGTAGTATAACCATTGGTATCAC 58.791 37.037 9.20 7.09 46.37 3.06
2830 3241 8.326765 ACCAAGTAGTATAACCATTGGTATCA 57.673 34.615 9.20 0.00 46.37 2.15
2845 3256 6.367374 TCACATTCATGGAACCAAGTAGTA 57.633 37.500 0.00 0.00 0.00 1.82
2850 3261 5.909621 AAGATCACATTCATGGAACCAAG 57.090 39.130 0.00 0.00 0.00 3.61
2912 3352 8.179487 AGATATTTTGGATTATGCCCTACCATT 58.821 33.333 0.00 0.00 0.00 3.16
2989 3513 7.228108 TCAGATGTTTCAGATATGAAGGCATTC 59.772 37.037 17.38 3.66 35.94 2.67
2990 3514 7.058525 TCAGATGTTTCAGATATGAAGGCATT 58.941 34.615 17.38 9.27 35.94 3.56
2991 3515 6.598503 TCAGATGTTTCAGATATGAAGGCAT 58.401 36.000 16.72 16.72 38.54 4.40
2992 3516 5.993055 TCAGATGTTTCAGATATGAAGGCA 58.007 37.500 2.58 7.27 0.00 4.75
2993 3517 6.932356 TTCAGATGTTTCAGATATGAAGGC 57.068 37.500 2.58 1.86 0.00 4.35
2994 3518 8.396390 CAGTTTCAGATGTTTCAGATATGAAGG 58.604 37.037 2.58 0.00 0.00 3.46
2995 3519 9.159364 TCAGTTTCAGATGTTTCAGATATGAAG 57.841 33.333 2.58 0.00 0.00 3.02
2998 3522 9.552114 GTTTCAGTTTCAGATGTTTCAGATATG 57.448 33.333 0.00 0.00 0.00 1.78
3015 3539 8.477419 TTCCATTTCTATTCCAGTTTCAGTTT 57.523 30.769 0.00 0.00 0.00 2.66
3017 3541 7.234355 ACTTCCATTTCTATTCCAGTTTCAGT 58.766 34.615 0.00 0.00 0.00 3.41
3032 3556 8.723942 ACACAGATATCTTGTACTTCCATTTC 57.276 34.615 14.87 0.00 0.00 2.17
3035 3559 8.103305 ACAAACACAGATATCTTGTACTTCCAT 58.897 33.333 16.08 2.60 0.00 3.41
3036 3560 7.450074 ACAAACACAGATATCTTGTACTTCCA 58.550 34.615 16.08 0.00 0.00 3.53
3037 3561 7.907214 ACAAACACAGATATCTTGTACTTCC 57.093 36.000 16.08 0.00 0.00 3.46
3137 3679 5.751586 TGACATGTTAGGGTTAGAATTCCC 58.248 41.667 0.00 0.00 43.71 3.97
3141 3683 9.574516 GGATAATTGACATGTTAGGGTTAGAAT 57.425 33.333 0.00 0.00 0.00 2.40
3231 3773 8.785329 TTATGAATAAACACTACTGTCATGCA 57.215 30.769 0.00 0.00 0.00 3.96
3311 3853 9.991906 CTTATATTTAAGAACCGAGGGAATACA 57.008 33.333 0.00 0.00 37.59 2.29
3312 3854 9.993454 ACTTATATTTAAGAACCGAGGGAATAC 57.007 33.333 9.58 0.00 38.56 1.89
3314 3856 8.935741 AGACTTATATTTAAGAACCGAGGGAAT 58.064 33.333 9.58 0.00 38.56 3.01
3315 3857 8.315220 AGACTTATATTTAAGAACCGAGGGAA 57.685 34.615 9.58 0.00 38.56 3.97
3316 3858 7.909485 AGACTTATATTTAAGAACCGAGGGA 57.091 36.000 9.58 0.00 38.56 4.20
3317 3859 8.827677 CAAAGACTTATATTTAAGAACCGAGGG 58.172 37.037 9.58 0.00 38.56 4.30
3318 3860 9.379791 ACAAAGACTTATATTTAAGAACCGAGG 57.620 33.333 9.58 0.00 38.56 4.63
3341 3883 9.470399 TGAGTGTAGGTAGTGAAATATCTACAA 57.530 33.333 11.35 0.00 46.04 2.41
3342 3884 9.470399 TTGAGTGTAGGTAGTGAAATATCTACA 57.530 33.333 6.78 6.78 43.72 2.74
3347 3889 8.893727 GCATTTTGAGTGTAGGTAGTGAAATAT 58.106 33.333 0.00 0.00 0.00 1.28
3348 3890 7.880713 TGCATTTTGAGTGTAGGTAGTGAAATA 59.119 33.333 0.00 0.00 0.00 1.40
3349 3891 6.714810 TGCATTTTGAGTGTAGGTAGTGAAAT 59.285 34.615 0.00 0.00 0.00 2.17
3350 3892 6.058833 TGCATTTTGAGTGTAGGTAGTGAAA 58.941 36.000 0.00 0.00 0.00 2.69
3351 3893 5.616270 TGCATTTTGAGTGTAGGTAGTGAA 58.384 37.500 0.00 0.00 0.00 3.18
3352 3894 5.222079 TGCATTTTGAGTGTAGGTAGTGA 57.778 39.130 0.00 0.00 0.00 3.41
3353 3895 5.877012 AGATGCATTTTGAGTGTAGGTAGTG 59.123 40.000 0.00 0.00 0.00 2.74
3354 3896 6.054860 AGATGCATTTTGAGTGTAGGTAGT 57.945 37.500 0.00 0.00 0.00 2.73
3355 3897 9.935241 ATATAGATGCATTTTGAGTGTAGGTAG 57.065 33.333 0.00 0.00 0.00 3.18
3357 3899 9.712305 GTATATAGATGCATTTTGAGTGTAGGT 57.288 33.333 0.00 0.00 0.00 3.08
3358 3900 9.710900 TGTATATAGATGCATTTTGAGTGTAGG 57.289 33.333 0.00 0.00 0.00 3.18
3361 3903 9.224267 GGATGTATATAGATGCATTTTGAGTGT 57.776 33.333 0.00 0.00 38.38 3.55
3362 3904 8.385858 CGGATGTATATAGATGCATTTTGAGTG 58.614 37.037 11.19 0.00 38.38 3.51
3363 3905 8.097038 ACGGATGTATATAGATGCATTTTGAGT 58.903 33.333 11.19 0.00 38.38 3.41
3364 3906 8.484641 ACGGATGTATATAGATGCATTTTGAG 57.515 34.615 11.19 0.00 38.38 3.02
3367 3909 9.890629 ACATACGGATGTATATAGATGCATTTT 57.109 29.630 12.79 0.00 44.77 1.82
3368 3910 9.317936 CACATACGGATGTATATAGATGCATTT 57.682 33.333 14.23 0.00 44.82 2.32
3369 3911 7.928167 CCACATACGGATGTATATAGATGCATT 59.072 37.037 14.23 1.23 44.82 3.56
3370 3912 7.069950 ACCACATACGGATGTATATAGATGCAT 59.930 37.037 14.23 0.00 44.82 3.96
3371 3913 6.379988 ACCACATACGGATGTATATAGATGCA 59.620 38.462 14.23 0.00 44.82 3.96
3372 3914 6.806751 ACCACATACGGATGTATATAGATGC 58.193 40.000 14.23 0.00 44.82 3.91
3379 3921 9.299465 TCACTATAAACCACATACGGATGTATA 57.701 33.333 14.23 6.48 44.82 1.47
3380 3922 8.185506 TCACTATAAACCACATACGGATGTAT 57.814 34.615 14.23 5.54 44.82 2.29
3381 3923 7.585579 TCACTATAAACCACATACGGATGTA 57.414 36.000 14.23 0.00 44.82 2.29
3383 3925 7.780008 TTTCACTATAAACCACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
3384 3926 8.429641 AGATTTCACTATAAACCACATACGGAT 58.570 33.333 0.00 0.00 0.00 4.18
3385 3927 7.788026 AGATTTCACTATAAACCACATACGGA 58.212 34.615 0.00 0.00 0.00 4.69
3386 3928 7.926555 AGAGATTTCACTATAAACCACATACGG 59.073 37.037 0.00 0.00 0.00 4.02
3387 3929 8.873215 AGAGATTTCACTATAAACCACATACG 57.127 34.615 0.00 0.00 0.00 3.06
3410 3952 9.507280 CCGTTCGTAAATATAAGTCTTTGTAGA 57.493 33.333 0.00 0.00 0.00 2.59
3411 3953 9.507280 TCCGTTCGTAAATATAAGTCTTTGTAG 57.493 33.333 0.00 0.00 0.00 2.74
3412 3954 9.507280 CTCCGTTCGTAAATATAAGTCTTTGTA 57.493 33.333 0.00 0.00 0.00 2.41
3413 3955 7.490402 CCTCCGTTCGTAAATATAAGTCTTTGT 59.510 37.037 0.00 0.00 0.00 2.83
3414 3956 7.042925 CCCTCCGTTCGTAAATATAAGTCTTTG 60.043 40.741 0.00 0.00 0.00 2.77
3415 3957 6.982724 CCCTCCGTTCGTAAATATAAGTCTTT 59.017 38.462 0.00 0.00 0.00 2.52
3416 3958 6.322201 TCCCTCCGTTCGTAAATATAAGTCTT 59.678 38.462 0.00 0.00 0.00 3.01
3417 3959 5.829924 TCCCTCCGTTCGTAAATATAAGTCT 59.170 40.000 0.00 0.00 0.00 3.24
3418 3960 6.076981 TCCCTCCGTTCGTAAATATAAGTC 57.923 41.667 0.00 0.00 0.00 3.01
3419 3961 5.595952 ACTCCCTCCGTTCGTAAATATAAGT 59.404 40.000 0.00 0.00 0.00 2.24
3420 3962 6.081872 ACTCCCTCCGTTCGTAAATATAAG 57.918 41.667 0.00 0.00 0.00 1.73
3421 3963 6.294176 GCTACTCCCTCCGTTCGTAAATATAA 60.294 42.308 0.00 0.00 0.00 0.98
3422 3964 5.182001 GCTACTCCCTCCGTTCGTAAATATA 59.818 44.000 0.00 0.00 0.00 0.86
3423 3965 4.022503 GCTACTCCCTCCGTTCGTAAATAT 60.023 45.833 0.00 0.00 0.00 1.28
3424 3966 3.316308 GCTACTCCCTCCGTTCGTAAATA 59.684 47.826 0.00 0.00 0.00 1.40
3425 3967 2.100418 GCTACTCCCTCCGTTCGTAAAT 59.900 50.000 0.00 0.00 0.00 1.40
3426 3968 1.474077 GCTACTCCCTCCGTTCGTAAA 59.526 52.381 0.00 0.00 0.00 2.01
3427 3969 1.098050 GCTACTCCCTCCGTTCGTAA 58.902 55.000 0.00 0.00 0.00 3.18
3428 3970 0.254178 AGCTACTCCCTCCGTTCGTA 59.746 55.000 0.00 0.00 0.00 3.43
3429 3971 0.254178 TAGCTACTCCCTCCGTTCGT 59.746 55.000 0.00 0.00 0.00 3.85
3430 3972 1.606903 ATAGCTACTCCCTCCGTTCG 58.393 55.000 0.00 0.00 0.00 3.95
3431 3973 5.725325 ATAAATAGCTACTCCCTCCGTTC 57.275 43.478 0.00 0.00 0.00 3.95
3432 3974 6.496144 AAATAAATAGCTACTCCCTCCGTT 57.504 37.500 0.00 0.00 0.00 4.44
3433 3975 6.326843 AGAAAATAAATAGCTACTCCCTCCGT 59.673 38.462 0.00 0.00 0.00 4.69
3434 3976 6.760291 AGAAAATAAATAGCTACTCCCTCCG 58.240 40.000 0.00 0.00 0.00 4.63
3435 3977 8.982091 AAAGAAAATAAATAGCTACTCCCTCC 57.018 34.615 0.00 0.00 0.00 4.30
3465 4007 8.755028 TGGGTACGTATAACATCAGCATATATT 58.245 33.333 0.00 0.00 0.00 1.28
3466 4008 8.301252 TGGGTACGTATAACATCAGCATATAT 57.699 34.615 0.00 0.00 0.00 0.86
3467 4009 7.706100 TGGGTACGTATAACATCAGCATATA 57.294 36.000 0.00 0.00 0.00 0.86
3468 4010 6.599356 TGGGTACGTATAACATCAGCATAT 57.401 37.500 0.00 0.00 0.00 1.78
3469 4011 6.599356 ATGGGTACGTATAACATCAGCATA 57.401 37.500 0.00 0.00 0.00 3.14
3470 4012 4.948341 TGGGTACGTATAACATCAGCAT 57.052 40.909 0.00 0.00 0.00 3.79
3471 4013 4.948341 ATGGGTACGTATAACATCAGCA 57.052 40.909 0.00 0.00 0.00 4.41
3472 4014 5.107607 CGAAATGGGTACGTATAACATCAGC 60.108 44.000 0.00 0.00 0.00 4.26
3473 4015 6.210796 TCGAAATGGGTACGTATAACATCAG 58.789 40.000 0.00 0.67 0.00 2.90
3474 4016 6.146601 TCGAAATGGGTACGTATAACATCA 57.853 37.500 0.00 0.00 0.00 3.07


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.