Multiple sequence alignment - TraesCS1B01G174600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G174600 chr1B 100.000 3543 0 0 1 3543 314569669 314573211 0.000000e+00 6543.0
1 TraesCS1B01G174600 chr1B 92.500 160 12 0 229 388 345338670 345338829 2.750000e-56 230.0
2 TraesCS1B01G174600 chr1B 94.393 107 6 0 3005 3111 583544869 583544763 7.870000e-37 165.0
3 TraesCS1B01G174600 chr1D 92.732 2339 97 33 228 2506 219483783 219486108 0.000000e+00 3310.0
4 TraesCS1B01G174600 chr1D 90.312 609 42 11 2800 3404 219486392 219486987 0.000000e+00 782.0
5 TraesCS1B01G174600 chr1D 95.197 229 10 1 2519 2746 219486152 219486380 9.350000e-96 361.0
6 TraesCS1B01G174600 chr1D 92.683 164 12 0 229 392 267730632 267730469 1.640000e-58 237.0
7 TraesCS1B01G174600 chr1A 92.531 1861 95 18 228 2063 282552264 282554105 0.000000e+00 2627.0
8 TraesCS1B01G174600 chr1A 92.208 616 16 14 2091 2675 282554199 282554813 0.000000e+00 843.0
9 TraesCS1B01G174600 chr1A 86.538 364 42 4 2821 3180 282688853 282689213 9.220000e-106 394.0
10 TraesCS1B01G174600 chr1A 87.500 336 37 2 2768 3103 282690574 282690904 2.000000e-102 383.0
11 TraesCS1B01G174600 chr1A 89.640 222 23 0 3241 3462 282689321 282689542 2.080000e-72 283.0
12 TraesCS1B01G174600 chr1A 92.073 164 13 0 229 392 335045336 335045499 7.650000e-57 231.0
13 TraesCS1B01G174600 chr1A 93.985 133 8 0 3285 3417 22569331 22569199 6.000000e-48 202.0
14 TraesCS1B01G174600 chr1A 93.939 99 5 1 1 99 335045188 335045285 7.920000e-32 148.0
15 TraesCS1B01G174600 chr7B 93.985 133 8 0 3285 3417 716902658 716902526 6.000000e-48 202.0
16 TraesCS1B01G174600 chr7A 93.985 133 8 0 3285 3417 60286335 60286467 6.000000e-48 202.0
17 TraesCS1B01G174600 chr4A 93.985 133 8 0 3285 3417 67604006 67604138 6.000000e-48 202.0
18 TraesCS1B01G174600 chr4A 93.985 133 8 0 3285 3417 246681645 246681777 6.000000e-48 202.0
19 TraesCS1B01G174600 chr3A 93.985 133 8 0 3285 3417 719015141 719015009 6.000000e-48 202.0
20 TraesCS1B01G174600 chr3A 93.985 133 8 0 3285 3417 725803792 725803924 6.000000e-48 202.0
21 TraesCS1B01G174600 chr3A 96.552 58 2 0 2848 2905 34536571 34536514 2.910000e-16 97.1
22 TraesCS1B01G174600 chr3D 94.545 110 6 0 3002 3111 202629662 202629771 1.690000e-38 171.0
23 TraesCS1B01G174600 chr6B 93.636 110 7 0 3002 3111 128895424 128895533 7.870000e-37 165.0
24 TraesCS1B01G174600 chr6B 94.393 107 6 0 3005 3111 681546620 681546514 7.870000e-37 165.0
25 TraesCS1B01G174600 chr6A 94.393 107 6 0 3005 3111 597223260 597223154 7.870000e-37 165.0
26 TraesCS1B01G174600 chr5B 93.636 110 7 0 3002 3111 533046092 533046201 7.870000e-37 165.0
27 TraesCS1B01G174600 chr6D 95.082 61 3 0 2848 2908 183388705 183388765 2.910000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G174600 chr1B 314569669 314573211 3542 False 6543.000000 6543 100.000000 1 3543 1 chr1B.!!$F1 3542
1 TraesCS1B01G174600 chr1D 219483783 219486987 3204 False 1484.333333 3310 92.747000 228 3404 3 chr1D.!!$F1 3176
2 TraesCS1B01G174600 chr1A 282552264 282554813 2549 False 1735.000000 2627 92.369500 228 2675 2 chr1A.!!$F1 2447
3 TraesCS1B01G174600 chr1A 282688853 282690904 2051 False 353.333333 394 87.892667 2768 3462 3 chr1A.!!$F2 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.030504 CCTCATTGCGTTTGTGTGCA 59.969 50.0 0.00 0.0 39.81 4.57 F
1351 1375 0.108992 CGAAACCGAGGAACCGATCA 60.109 55.0 0.00 0.0 0.00 2.92 F
1358 1382 0.598680 GAGGAACCGATCATGCCTCG 60.599 60.0 5.42 9.7 36.18 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2051 2090 0.037697 AAGCGTATGTGGCGACTTCA 60.038 50.0 0.0 0.0 35.00 3.02 R
2355 2468 0.179145 CGTCGTAGAAGCCACCGAAT 60.179 55.0 0.0 0.0 39.69 3.34 R
2990 3141 0.250338 GACAATCCCCGCCTACCATC 60.250 60.0 0.0 0.0 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.544038 AAGATTTTGGTAAATGCTGTTTGC 57.456 33.333 0.00 0.00 43.25 3.68
35 36 3.863142 GCTGTTTGCATCCTCTTCAAT 57.137 42.857 0.00 0.00 42.31 2.57
36 37 4.184079 GCTGTTTGCATCCTCTTCAATT 57.816 40.909 0.00 0.00 42.31 2.32
37 38 5.314923 GCTGTTTGCATCCTCTTCAATTA 57.685 39.130 0.00 0.00 42.31 1.40
38 39 5.098211 GCTGTTTGCATCCTCTTCAATTAC 58.902 41.667 0.00 0.00 42.31 1.89
39 40 5.643379 TGTTTGCATCCTCTTCAATTACC 57.357 39.130 0.00 0.00 0.00 2.85
40 41 5.076182 TGTTTGCATCCTCTTCAATTACCA 58.924 37.500 0.00 0.00 0.00 3.25
41 42 5.538053 TGTTTGCATCCTCTTCAATTACCAA 59.462 36.000 0.00 0.00 0.00 3.67
42 43 6.211184 TGTTTGCATCCTCTTCAATTACCAAT 59.789 34.615 0.00 0.00 0.00 3.16
43 44 6.455360 TTGCATCCTCTTCAATTACCAATC 57.545 37.500 0.00 0.00 0.00 2.67
44 45 4.889409 TGCATCCTCTTCAATTACCAATCC 59.111 41.667 0.00 0.00 0.00 3.01
45 46 5.136105 GCATCCTCTTCAATTACCAATCCT 58.864 41.667 0.00 0.00 0.00 3.24
46 47 6.126507 TGCATCCTCTTCAATTACCAATCCTA 60.127 38.462 0.00 0.00 0.00 2.94
47 48 6.944862 GCATCCTCTTCAATTACCAATCCTAT 59.055 38.462 0.00 0.00 0.00 2.57
48 49 7.449704 GCATCCTCTTCAATTACCAATCCTATT 59.550 37.037 0.00 0.00 0.00 1.73
49 50 9.359653 CATCCTCTTCAATTACCAATCCTATTT 57.640 33.333 0.00 0.00 0.00 1.40
50 51 8.752005 TCCTCTTCAATTACCAATCCTATTTG 57.248 34.615 0.00 0.00 0.00 2.32
51 52 8.336235 TCCTCTTCAATTACCAATCCTATTTGT 58.664 33.333 0.00 0.00 0.00 2.83
52 53 8.408601 CCTCTTCAATTACCAATCCTATTTGTG 58.591 37.037 0.00 0.00 0.00 3.33
53 54 8.292444 TCTTCAATTACCAATCCTATTTGTGG 57.708 34.615 0.00 0.00 37.17 4.17
54 55 7.893302 TCTTCAATTACCAATCCTATTTGTGGT 59.107 33.333 0.00 0.00 46.12 4.16
55 56 8.429237 TTCAATTACCAATCCTATTTGTGGTT 57.571 30.769 0.00 0.00 41.68 3.67
56 57 8.429237 TCAATTACCAATCCTATTTGTGGTTT 57.571 30.769 0.00 0.00 41.68 3.27
57 58 8.875168 TCAATTACCAATCCTATTTGTGGTTTT 58.125 29.630 0.00 0.00 41.68 2.43
58 59 8.934825 CAATTACCAATCCTATTTGTGGTTTTG 58.065 33.333 0.00 1.96 41.68 2.44
59 60 4.893608 ACCAATCCTATTTGTGGTTTTGC 58.106 39.130 0.00 0.00 41.68 3.68
60 61 4.592778 ACCAATCCTATTTGTGGTTTTGCT 59.407 37.500 0.00 0.00 41.68 3.91
61 62 5.777732 ACCAATCCTATTTGTGGTTTTGCTA 59.222 36.000 0.00 0.00 41.68 3.49
62 63 6.268847 ACCAATCCTATTTGTGGTTTTGCTAA 59.731 34.615 0.00 0.00 41.68 3.09
63 64 7.158021 CCAATCCTATTTGTGGTTTTGCTAAA 58.842 34.615 0.00 0.00 0.00 1.85
64 65 7.117667 CCAATCCTATTTGTGGTTTTGCTAAAC 59.882 37.037 14.36 14.36 42.34 2.01
65 66 6.969993 TCCTATTTGTGGTTTTGCTAAACT 57.030 33.333 20.43 5.23 42.61 2.66
66 67 7.354751 TCCTATTTGTGGTTTTGCTAAACTT 57.645 32.000 20.43 5.02 42.61 2.66
67 68 7.206687 TCCTATTTGTGGTTTTGCTAAACTTG 58.793 34.615 20.43 4.04 42.61 3.16
68 69 6.983890 CCTATTTGTGGTTTTGCTAAACTTGT 59.016 34.615 20.43 6.74 42.61 3.16
69 70 6.660887 ATTTGTGGTTTTGCTAAACTTGTG 57.339 33.333 20.43 0.00 42.61 3.33
70 71 4.792521 TGTGGTTTTGCTAAACTTGTGT 57.207 36.364 20.43 0.00 42.61 3.72
71 72 4.739195 TGTGGTTTTGCTAAACTTGTGTC 58.261 39.130 20.43 6.21 42.61 3.67
72 73 3.789224 GTGGTTTTGCTAAACTTGTGTCG 59.211 43.478 20.43 0.00 42.61 4.35
73 74 3.690139 TGGTTTTGCTAAACTTGTGTCGA 59.310 39.130 20.43 0.00 42.61 4.20
74 75 4.336993 TGGTTTTGCTAAACTTGTGTCGAT 59.663 37.500 20.43 0.00 42.61 3.59
75 76 4.675114 GGTTTTGCTAAACTTGTGTCGATG 59.325 41.667 20.43 0.00 42.61 3.84
76 77 4.481930 TTTGCTAAACTTGTGTCGATGG 57.518 40.909 0.00 0.00 0.00 3.51
77 78 3.120321 TGCTAAACTTGTGTCGATGGT 57.880 42.857 0.00 0.00 0.00 3.55
78 79 3.064207 TGCTAAACTTGTGTCGATGGTC 58.936 45.455 0.00 0.00 0.00 4.02
79 80 3.244078 TGCTAAACTTGTGTCGATGGTCT 60.244 43.478 0.00 0.00 0.00 3.85
80 81 4.021807 TGCTAAACTTGTGTCGATGGTCTA 60.022 41.667 0.00 0.00 0.00 2.59
81 82 4.927425 GCTAAACTTGTGTCGATGGTCTAA 59.073 41.667 0.00 0.00 0.00 2.10
82 83 5.581085 GCTAAACTTGTGTCGATGGTCTAAT 59.419 40.000 0.00 0.00 0.00 1.73
83 84 6.237861 GCTAAACTTGTGTCGATGGTCTAATC 60.238 42.308 0.00 0.00 0.00 1.75
84 85 5.407407 AACTTGTGTCGATGGTCTAATCT 57.593 39.130 0.00 0.00 0.00 2.40
85 86 4.748892 ACTTGTGTCGATGGTCTAATCTG 58.251 43.478 0.00 0.00 0.00 2.90
86 87 4.220821 ACTTGTGTCGATGGTCTAATCTGT 59.779 41.667 0.00 0.00 0.00 3.41
87 88 4.801330 TGTGTCGATGGTCTAATCTGTT 57.199 40.909 0.00 0.00 0.00 3.16
88 89 5.907866 TGTGTCGATGGTCTAATCTGTTA 57.092 39.130 0.00 0.00 0.00 2.41
89 90 5.891451 TGTGTCGATGGTCTAATCTGTTAG 58.109 41.667 0.00 0.00 38.93 2.34
90 91 5.417894 TGTGTCGATGGTCTAATCTGTTAGT 59.582 40.000 0.00 0.00 38.72 2.24
91 92 6.071560 TGTGTCGATGGTCTAATCTGTTAGTT 60.072 38.462 0.00 0.00 38.72 2.24
92 93 6.812160 GTGTCGATGGTCTAATCTGTTAGTTT 59.188 38.462 0.00 0.00 38.72 2.66
93 94 7.331193 GTGTCGATGGTCTAATCTGTTAGTTTT 59.669 37.037 0.00 0.00 38.72 2.43
94 95 8.525316 TGTCGATGGTCTAATCTGTTAGTTTTA 58.475 33.333 0.00 0.00 38.72 1.52
95 96 9.021863 GTCGATGGTCTAATCTGTTAGTTTTAG 57.978 37.037 0.00 0.00 38.72 1.85
96 97 8.746530 TCGATGGTCTAATCTGTTAGTTTTAGT 58.253 33.333 0.00 0.00 38.72 2.24
106 107 9.780186 AATCTGTTAGTTTTAGTATCCTATGGC 57.220 33.333 0.00 0.00 0.00 4.40
107 108 8.548880 TCTGTTAGTTTTAGTATCCTATGGCT 57.451 34.615 0.00 0.00 0.00 4.75
108 109 8.639761 TCTGTTAGTTTTAGTATCCTATGGCTC 58.360 37.037 0.00 0.00 0.00 4.70
109 110 8.313944 TGTTAGTTTTAGTATCCTATGGCTCA 57.686 34.615 0.00 0.00 0.00 4.26
110 111 8.202137 TGTTAGTTTTAGTATCCTATGGCTCAC 58.798 37.037 0.00 0.00 0.00 3.51
111 112 8.422566 GTTAGTTTTAGTATCCTATGGCTCACT 58.577 37.037 0.00 0.00 0.00 3.41
112 113 9.650714 TTAGTTTTAGTATCCTATGGCTCACTA 57.349 33.333 0.00 0.00 0.00 2.74
113 114 8.548880 AGTTTTAGTATCCTATGGCTCACTAA 57.451 34.615 0.00 0.00 0.00 2.24
114 115 8.989131 AGTTTTAGTATCCTATGGCTCACTAAA 58.011 33.333 0.00 0.00 36.94 1.85
115 116 9.780186 GTTTTAGTATCCTATGGCTCACTAAAT 57.220 33.333 5.78 0.00 37.93 1.40
120 121 9.160412 AGTATCCTATGGCTCACTAAATAAACT 57.840 33.333 0.00 0.00 0.00 2.66
121 122 9.780186 GTATCCTATGGCTCACTAAATAAACTT 57.220 33.333 0.00 0.00 0.00 2.66
138 139 5.479716 AAACTTATAATGACGAAAGGCCG 57.520 39.130 0.00 0.00 39.67 6.13
139 140 2.870411 ACTTATAATGACGAAAGGCCGC 59.130 45.455 0.00 0.00 39.67 6.53
140 141 2.902705 TATAATGACGAAAGGCCGCT 57.097 45.000 0.00 0.00 39.67 5.52
141 142 1.299541 ATAATGACGAAAGGCCGCTG 58.700 50.000 0.00 0.00 39.67 5.18
142 143 1.366111 TAATGACGAAAGGCCGCTGC 61.366 55.000 0.00 0.00 39.67 5.25
143 144 3.612247 ATGACGAAAGGCCGCTGCT 62.612 57.895 0.00 0.00 39.67 4.24
144 145 3.793144 GACGAAAGGCCGCTGCTG 61.793 66.667 0.00 0.00 37.74 4.41
145 146 4.314440 ACGAAAGGCCGCTGCTGA 62.314 61.111 0.00 0.00 37.74 4.26
146 147 2.821366 CGAAAGGCCGCTGCTGAT 60.821 61.111 0.00 0.00 37.74 2.90
147 148 2.796651 GAAAGGCCGCTGCTGATG 59.203 61.111 0.00 0.00 37.74 3.07
148 149 2.753043 AAAGGCCGCTGCTGATGG 60.753 61.111 0.00 0.00 37.74 3.51
149 150 4.809496 AAGGCCGCTGCTGATGGG 62.809 66.667 0.00 0.00 37.74 4.00
153 154 4.478371 CCGCTGCTGATGGGCTGA 62.478 66.667 0.00 0.00 33.89 4.26
154 155 2.437180 CGCTGCTGATGGGCTGAA 60.437 61.111 0.00 0.00 33.89 3.02
155 156 2.042259 CGCTGCTGATGGGCTGAAA 61.042 57.895 0.00 0.00 33.89 2.69
156 157 1.381928 CGCTGCTGATGGGCTGAAAT 61.382 55.000 0.00 0.00 33.89 2.17
157 158 0.822164 GCTGCTGATGGGCTGAAATT 59.178 50.000 0.00 0.00 33.89 1.82
158 159 1.206371 GCTGCTGATGGGCTGAAATTT 59.794 47.619 0.00 0.00 33.89 1.82
159 160 2.354403 GCTGCTGATGGGCTGAAATTTT 60.354 45.455 0.00 0.00 33.89 1.82
160 161 3.867216 GCTGCTGATGGGCTGAAATTTTT 60.867 43.478 0.00 0.00 33.89 1.94
176 177 2.818130 TTTTTCACAGGCCTCATTGC 57.182 45.000 0.00 0.00 0.00 3.56
177 178 0.597568 TTTTCACAGGCCTCATTGCG 59.402 50.000 0.00 0.00 0.00 4.85
178 179 0.537143 TTTCACAGGCCTCATTGCGT 60.537 50.000 0.00 0.00 0.00 5.24
179 180 0.537143 TTCACAGGCCTCATTGCGTT 60.537 50.000 0.00 0.00 0.00 4.84
180 181 0.537143 TCACAGGCCTCATTGCGTTT 60.537 50.000 0.00 0.00 0.00 3.60
181 182 0.387622 CACAGGCCTCATTGCGTTTG 60.388 55.000 0.00 0.00 0.00 2.93
182 183 0.823356 ACAGGCCTCATTGCGTTTGT 60.823 50.000 0.00 0.00 0.00 2.83
183 184 0.387622 CAGGCCTCATTGCGTTTGTG 60.388 55.000 0.00 0.00 0.00 3.33
184 185 0.823356 AGGCCTCATTGCGTTTGTGT 60.823 50.000 0.00 0.00 0.00 3.72
185 186 0.664166 GGCCTCATTGCGTTTGTGTG 60.664 55.000 0.00 0.00 0.00 3.82
186 187 1.277495 GCCTCATTGCGTTTGTGTGC 61.277 55.000 0.00 0.00 0.00 4.57
187 188 0.030504 CCTCATTGCGTTTGTGTGCA 59.969 50.000 0.00 0.00 39.81 4.57
188 189 1.336148 CCTCATTGCGTTTGTGTGCAT 60.336 47.619 0.00 0.00 41.42 3.96
189 190 2.095314 CCTCATTGCGTTTGTGTGCATA 60.095 45.455 0.00 0.00 41.42 3.14
190 191 3.165890 CTCATTGCGTTTGTGTGCATAG 58.834 45.455 0.00 0.00 41.42 2.23
191 192 2.551887 TCATTGCGTTTGTGTGCATAGT 59.448 40.909 0.00 0.00 41.42 2.12
192 193 3.004210 TCATTGCGTTTGTGTGCATAGTT 59.996 39.130 0.00 0.00 41.42 2.24
193 194 4.214332 TCATTGCGTTTGTGTGCATAGTTA 59.786 37.500 0.00 0.00 41.42 2.24
194 195 4.757799 TTGCGTTTGTGTGCATAGTTAT 57.242 36.364 0.00 0.00 41.42 1.89
195 196 4.757799 TGCGTTTGTGTGCATAGTTATT 57.242 36.364 0.00 0.00 35.90 1.40
196 197 4.471373 TGCGTTTGTGTGCATAGTTATTG 58.529 39.130 0.00 0.00 35.90 1.90
197 198 4.023622 TGCGTTTGTGTGCATAGTTATTGT 60.024 37.500 0.00 0.00 35.90 2.71
198 199 4.320690 GCGTTTGTGTGCATAGTTATTGTG 59.679 41.667 0.00 0.00 0.00 3.33
199 200 5.684850 CGTTTGTGTGCATAGTTATTGTGA 58.315 37.500 0.00 0.00 0.00 3.58
200 201 6.139435 CGTTTGTGTGCATAGTTATTGTGAA 58.861 36.000 0.00 0.00 0.00 3.18
201 202 6.303022 CGTTTGTGTGCATAGTTATTGTGAAG 59.697 38.462 0.00 0.00 0.00 3.02
202 203 5.295431 TGTGTGCATAGTTATTGTGAAGC 57.705 39.130 0.00 0.00 0.00 3.86
203 204 4.155826 TGTGTGCATAGTTATTGTGAAGCC 59.844 41.667 0.00 0.00 0.00 4.35
204 205 4.396166 GTGTGCATAGTTATTGTGAAGCCT 59.604 41.667 0.00 0.00 0.00 4.58
205 206 4.395854 TGTGCATAGTTATTGTGAAGCCTG 59.604 41.667 0.00 0.00 0.00 4.85
206 207 4.396166 GTGCATAGTTATTGTGAAGCCTGT 59.604 41.667 0.00 0.00 0.00 4.00
207 208 4.635765 TGCATAGTTATTGTGAAGCCTGTC 59.364 41.667 0.00 0.00 0.00 3.51
208 209 4.260375 GCATAGTTATTGTGAAGCCTGTCG 60.260 45.833 0.00 0.00 0.00 4.35
209 210 3.402628 AGTTATTGTGAAGCCTGTCGT 57.597 42.857 0.00 0.00 0.00 4.34
210 211 3.326747 AGTTATTGTGAAGCCTGTCGTC 58.673 45.455 0.00 0.00 0.00 4.20
211 212 1.990799 TATTGTGAAGCCTGTCGTCG 58.009 50.000 0.00 0.00 0.00 5.12
212 213 1.291877 ATTGTGAAGCCTGTCGTCGC 61.292 55.000 0.00 0.00 34.86 5.19
213 214 2.049063 GTGAAGCCTGTCGTCGCT 60.049 61.111 0.00 0.00 36.74 4.93
214 215 2.049156 TGAAGCCTGTCGTCGCTG 60.049 61.111 0.00 0.00 34.94 5.18
215 216 2.811317 GAAGCCTGTCGTCGCTGG 60.811 66.667 7.78 7.78 34.94 4.85
216 217 3.282745 GAAGCCTGTCGTCGCTGGA 62.283 63.158 13.83 0.00 34.94 3.86
217 218 3.288308 AAGCCTGTCGTCGCTGGAG 62.288 63.158 13.83 0.00 34.94 3.86
219 220 4.056125 CCTGTCGTCGCTGGAGCA 62.056 66.667 0.00 0.00 42.21 4.26
220 221 2.505777 CTGTCGTCGCTGGAGCAG 60.506 66.667 0.00 0.00 42.21 4.24
221 222 2.982744 CTGTCGTCGCTGGAGCAGA 61.983 63.158 0.00 0.00 42.21 4.26
222 223 2.258591 GTCGTCGCTGGAGCAGAA 59.741 61.111 0.00 0.00 42.21 3.02
223 224 1.803519 GTCGTCGCTGGAGCAGAAG 60.804 63.158 0.00 0.67 42.21 2.85
224 225 2.507992 CGTCGCTGGAGCAGAAGG 60.508 66.667 0.00 0.00 42.21 3.46
225 226 2.125350 GTCGCTGGAGCAGAAGGG 60.125 66.667 0.00 0.00 42.21 3.95
226 227 2.604686 TCGCTGGAGCAGAAGGGT 60.605 61.111 0.00 0.00 42.21 4.34
227 228 1.304962 TCGCTGGAGCAGAAGGGTA 60.305 57.895 0.00 0.00 42.21 3.69
228 229 1.142748 CGCTGGAGCAGAAGGGTAG 59.857 63.158 0.00 0.00 42.21 3.18
229 230 1.608717 CGCTGGAGCAGAAGGGTAGT 61.609 60.000 0.00 0.00 42.21 2.73
230 231 0.615850 GCTGGAGCAGAAGGGTAGTT 59.384 55.000 0.00 0.00 41.59 2.24
231 232 1.406205 GCTGGAGCAGAAGGGTAGTTC 60.406 57.143 0.00 0.00 41.59 3.01
259 260 1.065709 TCCCGTTCTGAATTACTGGCC 60.066 52.381 0.00 0.00 0.00 5.36
274 275 4.331159 ACTGGCCCTATATGGTTTTTGT 57.669 40.909 0.00 0.00 0.00 2.83
293 294 3.466836 TGTTCCTGCGTGATTATCCATC 58.533 45.455 0.00 0.00 0.00 3.51
335 336 4.999950 GTCACATCTCAACCTCTTGATGTT 59.000 41.667 4.93 0.00 44.62 2.71
342 343 6.537355 TCTCAACCTCTTGATGTTGATTTCT 58.463 36.000 17.26 0.00 46.89 2.52
344 345 8.156820 TCTCAACCTCTTGATGTTGATTTCTTA 58.843 33.333 17.26 0.38 46.89 2.10
387 388 6.852858 TCATTTCCGCGTCATTGATAATTA 57.147 33.333 4.92 0.00 0.00 1.40
394 395 7.320399 TCCGCGTCATTGATAATTAGTATCAT 58.680 34.615 4.92 0.00 46.38 2.45
471 472 8.889975 CGAATACGTCTGTACTGTAATGTAATC 58.110 37.037 0.00 0.00 32.26 1.75
596 602 5.246656 TCATTGAATTTTCTGTTGCCAGGAT 59.753 36.000 0.00 0.00 39.31 3.24
597 603 5.549742 TTGAATTTTCTGTTGCCAGGATT 57.450 34.783 0.00 0.00 39.31 3.01
598 604 5.549742 TGAATTTTCTGTTGCCAGGATTT 57.450 34.783 0.00 0.00 39.31 2.17
601 607 6.260493 TGAATTTTCTGTTGCCAGGATTTTTG 59.740 34.615 0.00 0.00 39.31 2.44
604 610 5.350504 TTCTGTTGCCAGGATTTTTGAAA 57.649 34.783 0.00 0.00 39.31 2.69
663 669 2.777845 GACACATGTTAATCGCGCAATG 59.222 45.455 8.75 1.12 0.00 2.82
667 673 3.126858 ACATGTTAATCGCGCAATGTTCT 59.873 39.130 8.75 0.00 0.00 3.01
724 732 4.551702 AATAAACATTTCAACCCTGGCC 57.448 40.909 0.00 0.00 0.00 5.36
740 748 1.314730 GGCCGAAACCTGAAAAGTCA 58.685 50.000 0.00 0.00 0.00 3.41
751 759 1.798223 TGAAAAGTCATCGCGTTCCAG 59.202 47.619 5.77 0.00 0.00 3.86
775 783 5.853282 GGCATTTCTATCGTGAATAATGCAC 59.147 40.000 20.12 0.00 39.78 4.57
791 799 0.237498 GCACGGCAACTTGGTAGAAC 59.763 55.000 0.00 0.00 36.11 3.01
801 809 5.163982 GCAACTTGGTAGAACGATACAGAAC 60.164 44.000 0.00 0.00 0.00 3.01
815 824 0.820871 CAGAACCCCTCTCTCCTTCG 59.179 60.000 0.00 0.00 29.07 3.79
919 932 1.778017 TTGGTGCAAGGAGCTGGCTA 61.778 55.000 0.00 0.00 45.94 3.93
993 1010 1.557269 TTCTCCCTCTGGCTCCTTGC 61.557 60.000 0.00 0.00 41.94 4.01
994 1011 1.994507 CTCCCTCTGGCTCCTTGCT 60.995 63.158 0.00 0.00 42.39 3.91
1023 1040 0.179100 ATCAGTTGATCCGTCCAGCG 60.179 55.000 0.00 0.00 40.95 5.18
1046 1069 0.733909 GCAAGCAATCGGGTTCAAGC 60.734 55.000 0.00 0.00 34.30 4.01
1083 1106 1.514657 CGGTTGCGTCCGTCGATTA 60.515 57.895 10.57 0.00 44.77 1.75
1084 1107 1.469126 CGGTTGCGTCCGTCGATTAG 61.469 60.000 10.57 0.00 44.77 1.73
1085 1108 0.457337 GGTTGCGTCCGTCGATTAGT 60.457 55.000 0.00 0.00 42.86 2.24
1086 1109 1.343506 GTTGCGTCCGTCGATTAGTT 58.656 50.000 0.00 0.00 42.86 2.24
1087 1110 1.723003 GTTGCGTCCGTCGATTAGTTT 59.277 47.619 0.00 0.00 42.86 2.66
1176 1199 0.388649 AACACAGGAGCTTCTACGCG 60.389 55.000 3.53 3.53 34.40 6.01
1237 1261 0.838987 TCTTGCCGGTAAGGAAGGGT 60.839 55.000 28.91 0.00 45.00 4.34
1295 1319 0.898320 CCACTCGTGTTCTCATCCCT 59.102 55.000 0.00 0.00 0.00 4.20
1351 1375 0.108992 CGAAACCGAGGAACCGATCA 60.109 55.000 0.00 0.00 0.00 2.92
1358 1382 0.598680 GAGGAACCGATCATGCCTCG 60.599 60.000 5.42 9.70 36.18 4.63
1515 1545 1.377856 GGAGAAGTTCCAGGCCTGC 60.378 63.158 28.39 14.14 46.01 4.85
1517 1547 2.172483 GAGAAGTTCCAGGCCTGCGA 62.172 60.000 28.39 21.96 0.00 5.10
1547 1577 2.509336 GGTGGACGACGATGGCAG 60.509 66.667 0.00 0.00 0.00 4.85
1580 1610 1.904032 CAGAGGAAGGGGAGTCAGC 59.096 63.158 0.00 0.00 0.00 4.26
1596 1626 2.261671 GCGCTTCCTCCTCACGAA 59.738 61.111 0.00 0.00 0.00 3.85
1880 1910 1.482954 TCCAGAGCATCAGACTCCTG 58.517 55.000 0.00 0.00 41.74 3.86
1959 1993 6.578020 TTAGAAACACACTACAAACACTCG 57.422 37.500 0.00 0.00 0.00 4.18
2003 2042 1.538204 CGCATACACGTGCTCCCTATT 60.538 52.381 17.22 0.00 42.88 1.73
2004 2043 2.135933 GCATACACGTGCTCCCTATTC 58.864 52.381 17.22 0.00 41.82 1.75
2008 2047 1.755380 ACACGTGCTCCCTATTCCTAC 59.245 52.381 17.22 0.00 0.00 3.18
2042 2081 1.211457 AGATTGAGCCGGCAGATCTTT 59.789 47.619 31.54 5.22 0.00 2.52
2049 2088 2.435805 AGCCGGCAGATCTTTCAGATTA 59.564 45.455 31.54 0.00 34.53 1.75
2051 2090 3.817647 GCCGGCAGATCTTTCAGATTAAT 59.182 43.478 24.80 0.00 34.53 1.40
2066 2105 5.753438 TCAGATTAATGAAGTCGCCACATAC 59.247 40.000 0.00 0.00 0.00 2.39
2079 2118 1.323534 CCACATACGCTTCGTAGTTGC 59.676 52.381 5.34 0.00 45.45 4.17
2239 2344 3.350833 CAATAGAAGCCTGGCTGAAGTT 58.649 45.455 24.16 12.43 39.62 2.66
2355 2468 1.638070 TCCACAAGGGCCAACATATCA 59.362 47.619 6.18 0.00 36.21 2.15
2384 2497 2.455032 CTTCTACGACGGCTTCTGATG 58.545 52.381 0.00 0.00 0.00 3.07
2385 2498 1.746470 TCTACGACGGCTTCTGATGA 58.254 50.000 0.00 0.00 0.00 2.92
2386 2499 2.298610 TCTACGACGGCTTCTGATGAT 58.701 47.619 0.00 0.00 0.00 2.45
2389 2503 0.103026 CGACGGCTTCTGATGATCCA 59.897 55.000 0.00 0.00 0.00 3.41
2506 2625 6.818644 CAGCCTTGTTAGTAGTTGTCATGTAT 59.181 38.462 0.00 0.00 0.00 2.29
2507 2626 7.979537 CAGCCTTGTTAGTAGTTGTCATGTATA 59.020 37.037 0.00 0.00 0.00 1.47
2508 2627 8.537016 AGCCTTGTTAGTAGTTGTCATGTATAA 58.463 33.333 0.00 0.00 0.00 0.98
2510 2629 8.804743 CCTTGTTAGTAGTTGTCATGTATAACG 58.195 37.037 0.00 0.00 34.59 3.18
2511 2630 7.745022 TGTTAGTAGTTGTCATGTATAACGC 57.255 36.000 0.00 0.00 34.59 4.84
2513 2632 5.333299 AGTAGTTGTCATGTATAACGCCA 57.667 39.130 0.00 0.00 34.59 5.69
2515 2634 5.983720 AGTAGTTGTCATGTATAACGCCATC 59.016 40.000 0.00 0.00 34.59 3.51
2516 2635 4.127171 AGTTGTCATGTATAACGCCATCC 58.873 43.478 0.00 0.00 34.59 3.51
2517 2636 2.749776 TGTCATGTATAACGCCATCCG 58.250 47.619 0.00 0.00 44.21 4.18
2730 2881 7.798982 GCTCTGTTTTTCTAACACAGTACAATC 59.201 37.037 0.00 0.00 39.24 2.67
2731 2882 7.847487 TCTGTTTTTCTAACACAGTACAATCG 58.153 34.615 0.00 0.00 39.24 3.34
2735 2886 8.758715 GTTTTTCTAACACAGTACAATCGTAGT 58.241 33.333 0.00 0.00 0.00 2.73
2746 2897 6.697455 CAGTACAATCGTAGTTGCTCACATAT 59.303 38.462 0.00 0.00 32.32 1.78
2749 2900 6.569780 ACAATCGTAGTTGCTCACATATACA 58.430 36.000 0.00 0.00 32.32 2.29
2750 2901 6.697455 ACAATCGTAGTTGCTCACATATACAG 59.303 38.462 0.00 0.00 32.32 2.74
2751 2902 5.183014 TCGTAGTTGCTCACATATACAGG 57.817 43.478 0.00 0.00 0.00 4.00
2752 2903 4.037565 TCGTAGTTGCTCACATATACAGGG 59.962 45.833 0.00 0.00 0.00 4.45
2753 2904 4.202121 CGTAGTTGCTCACATATACAGGGT 60.202 45.833 0.00 0.00 0.00 4.34
2755 2906 5.277857 AGTTGCTCACATATACAGGGTAC 57.722 43.478 0.00 0.00 0.00 3.34
2774 2925 6.954352 GGTACCCCTATAAATCTCCAAGAT 57.046 41.667 0.00 0.00 36.28 2.40
2776 2927 7.849160 GGTACCCCTATAAATCTCCAAGATAC 58.151 42.308 0.00 0.00 32.89 2.24
2777 2928 7.679025 GGTACCCCTATAAATCTCCAAGATACT 59.321 40.741 0.00 0.00 32.89 2.12
2778 2929 9.765295 GTACCCCTATAAATCTCCAAGATACTA 57.235 37.037 0.00 0.00 32.89 1.82
2779 2930 8.667592 ACCCCTATAAATCTCCAAGATACTAC 57.332 38.462 0.00 0.00 32.89 2.73
2780 2931 8.465971 ACCCCTATAAATCTCCAAGATACTACT 58.534 37.037 0.00 0.00 32.89 2.57
2781 2932 9.992442 CCCCTATAAATCTCCAAGATACTACTA 57.008 37.037 0.00 0.00 32.89 1.82
2790 2941 8.824756 TCTCCAAGATACTACTAGAATTGTGT 57.175 34.615 0.00 0.00 0.00 3.72
2791 2942 9.256228 TCTCCAAGATACTACTAGAATTGTGTT 57.744 33.333 0.00 0.00 0.00 3.32
2792 2943 9.522804 CTCCAAGATACTACTAGAATTGTGTTC 57.477 37.037 0.00 0.00 0.00 3.18
2793 2944 9.031537 TCCAAGATACTACTAGAATTGTGTTCA 57.968 33.333 0.00 0.00 0.00 3.18
2794 2945 9.823647 CCAAGATACTACTAGAATTGTGTTCAT 57.176 33.333 0.00 0.00 0.00 2.57
2796 2947 9.823647 AAGATACTACTAGAATTGTGTTCATGG 57.176 33.333 0.00 0.00 0.00 3.66
2797 2948 7.928706 AGATACTACTAGAATTGTGTTCATGGC 59.071 37.037 0.00 0.00 0.00 4.40
2798 2949 5.804639 ACTACTAGAATTGTGTTCATGGCA 58.195 37.500 0.00 0.00 0.00 4.92
2803 2954 4.910195 AGAATTGTGTTCATGGCACTCTA 58.090 39.130 17.65 7.76 37.70 2.43
2946 3097 7.833786 ACTACATCTCGTGGTTAACTGAATTA 58.166 34.615 5.42 0.00 35.44 1.40
2990 3141 9.987272 AAGAAGAAAAAGATCCCAAATAAAGTG 57.013 29.630 0.00 0.00 0.00 3.16
3010 3161 0.694444 ATGGTAGGCGGGGATTGTCT 60.694 55.000 0.00 0.00 0.00 3.41
3113 3264 5.539955 ACAACTTTTGGTGCCATATCTTTCT 59.460 36.000 0.00 0.00 41.86 2.52
3114 3265 6.719370 ACAACTTTTGGTGCCATATCTTTCTA 59.281 34.615 0.00 0.00 41.86 2.10
3148 3303 8.037758 TCAAGAAGAAGTAGCCATAGAAGAAAG 58.962 37.037 0.00 0.00 0.00 2.62
3193 3384 7.255242 CGAAGAAAATACTAATGATGGTGCCAT 60.255 37.037 2.95 2.95 39.69 4.40
3222 3418 2.037902 TGATGACGCCAACTTCACCTAA 59.962 45.455 0.00 0.00 0.00 2.69
3223 3419 1.873698 TGACGCCAACTTCACCTAAC 58.126 50.000 0.00 0.00 0.00 2.34
3224 3420 1.414919 TGACGCCAACTTCACCTAACT 59.585 47.619 0.00 0.00 0.00 2.24
3225 3421 2.158871 TGACGCCAACTTCACCTAACTT 60.159 45.455 0.00 0.00 0.00 2.66
3226 3422 3.069872 TGACGCCAACTTCACCTAACTTA 59.930 43.478 0.00 0.00 0.00 2.24
3235 3431 6.742559 ACTTCACCTAACTTAGTTCTTCCA 57.257 37.500 0.00 0.00 0.00 3.53
3312 3519 5.573669 CAGCTCTTTAAAAGACGAGGTCTAC 59.426 44.000 0.00 0.00 42.59 2.59
3339 3546 2.281208 CGGGTCGGGCAAGTTGAA 60.281 61.111 7.16 0.00 0.00 2.69
3406 3613 5.698741 ACCTGACATGACTATTGATTCCA 57.301 39.130 0.00 0.00 0.00 3.53
3414 3621 5.715439 TGACTATTGATTCCACCTCCATT 57.285 39.130 0.00 0.00 0.00 3.16
3420 3627 0.259938 ATTCCACCTCCATTGCTCCC 59.740 55.000 0.00 0.00 0.00 4.30
3427 3634 4.202609 CCACCTCCATTGCTCCCTATAAAT 60.203 45.833 0.00 0.00 0.00 1.40
3430 3637 6.600822 CACCTCCATTGCTCCCTATAAATATG 59.399 42.308 0.00 0.00 0.00 1.78
3464 3671 8.752005 ACTGCAAATAGGCTCTATTTAATTGA 57.248 30.769 15.48 0.00 34.04 2.57
3465 3672 8.844244 ACTGCAAATAGGCTCTATTTAATTGAG 58.156 33.333 15.48 11.08 35.63 3.02
3467 3674 7.998383 TGCAAATAGGCTCTATTTAATTGAGGA 59.002 33.333 15.72 5.70 33.59 3.71
3468 3675 8.850156 GCAAATAGGCTCTATTTAATTGAGGAA 58.150 33.333 15.72 0.00 33.59 3.36
3470 3677 8.628630 AATAGGCTCTATTTAATTGAGGAAGC 57.371 34.615 15.72 4.70 33.59 3.86
3471 3678 6.259346 AGGCTCTATTTAATTGAGGAAGCT 57.741 37.500 15.72 0.00 33.59 3.74
3472 3679 7.380423 AGGCTCTATTTAATTGAGGAAGCTA 57.620 36.000 15.72 0.00 33.59 3.32
3474 3681 8.443979 AGGCTCTATTTAATTGAGGAAGCTATT 58.556 33.333 15.72 0.00 33.59 1.73
3483 3690 6.793492 ATTGAGGAAGCTATTTATCGAAGC 57.207 37.500 0.00 0.00 36.48 3.86
3484 3691 4.632153 TGAGGAAGCTATTTATCGAAGCC 58.368 43.478 2.47 0.00 36.92 4.35
3485 3692 3.654414 AGGAAGCTATTTATCGAAGCCG 58.346 45.455 2.47 0.00 36.92 5.52
3486 3693 2.737252 GGAAGCTATTTATCGAAGCCGG 59.263 50.000 0.00 0.00 36.92 6.13
3487 3694 2.457366 AGCTATTTATCGAAGCCGGG 57.543 50.000 2.18 0.00 36.92 5.73
3489 3696 2.067013 GCTATTTATCGAAGCCGGGTC 58.933 52.381 6.62 0.00 36.24 4.46
3519 3726 5.612725 TTTTTGAAACTTTCAGGCATCCT 57.387 34.783 4.43 0.00 41.38 3.24
3521 3728 5.612725 TTTGAAACTTTCAGGCATCCTTT 57.387 34.783 4.43 0.00 41.38 3.11
3522 3729 4.853924 TGAAACTTTCAGGCATCCTTTC 57.146 40.909 0.00 0.00 34.08 2.62
3523 3730 3.253188 TGAAACTTTCAGGCATCCTTTCG 59.747 43.478 0.00 0.00 34.08 3.46
3524 3731 1.168714 ACTTTCAGGCATCCTTTCGC 58.831 50.000 0.00 0.00 0.00 4.70
3525 3732 1.167851 CTTTCAGGCATCCTTTCGCA 58.832 50.000 0.00 0.00 0.00 5.10
3527 3734 0.677731 TTCAGGCATCCTTTCGCAGG 60.678 55.000 0.00 0.00 45.64 4.85
3537 3744 0.175989 CTTTCGCAGGAGGGGTCTAC 59.824 60.000 0.00 0.00 0.00 2.59
3538 3745 0.252103 TTTCGCAGGAGGGGTCTACT 60.252 55.000 0.00 0.00 33.53 2.57
3539 3746 0.627451 TTCGCAGGAGGGGTCTACTA 59.373 55.000 0.00 0.00 30.89 1.82
3540 3747 0.183014 TCGCAGGAGGGGTCTACTAG 59.817 60.000 0.00 0.00 30.89 2.57
3541 3748 1.457009 CGCAGGAGGGGTCTACTAGC 61.457 65.000 0.00 0.00 30.89 3.42
3542 3749 0.105913 GCAGGAGGGGTCTACTAGCT 60.106 60.000 0.00 0.00 30.89 3.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 3.863142 ATTGAAGAGGATGCAAACAGC 57.137 42.857 0.00 0.00 45.96 4.40
16 17 5.183713 TGGTAATTGAAGAGGATGCAAACAG 59.816 40.000 0.00 0.00 0.00 3.16
17 18 5.076182 TGGTAATTGAAGAGGATGCAAACA 58.924 37.500 0.00 0.00 0.00 2.83
18 19 5.643379 TGGTAATTGAAGAGGATGCAAAC 57.357 39.130 0.00 0.00 0.00 2.93
19 20 6.127366 GGATTGGTAATTGAAGAGGATGCAAA 60.127 38.462 0.00 0.00 0.00 3.68
20 21 5.360714 GGATTGGTAATTGAAGAGGATGCAA 59.639 40.000 0.00 0.00 0.00 4.08
21 22 4.889409 GGATTGGTAATTGAAGAGGATGCA 59.111 41.667 0.00 0.00 0.00 3.96
22 23 5.136105 AGGATTGGTAATTGAAGAGGATGC 58.864 41.667 0.00 0.00 0.00 3.91
23 24 8.930846 AATAGGATTGGTAATTGAAGAGGATG 57.069 34.615 0.00 0.00 0.00 3.51
24 25 9.359653 CAAATAGGATTGGTAATTGAAGAGGAT 57.640 33.333 0.00 0.00 0.00 3.24
25 26 8.336235 ACAAATAGGATTGGTAATTGAAGAGGA 58.664 33.333 0.00 0.00 34.56 3.71
26 27 8.408601 CACAAATAGGATTGGTAATTGAAGAGG 58.591 37.037 0.00 0.00 34.56 3.69
27 28 8.408601 CCACAAATAGGATTGGTAATTGAAGAG 58.591 37.037 0.00 0.00 34.56 2.85
28 29 7.893302 ACCACAAATAGGATTGGTAATTGAAGA 59.107 33.333 0.00 0.00 40.69 2.87
29 30 8.066612 ACCACAAATAGGATTGGTAATTGAAG 57.933 34.615 0.00 0.00 40.69 3.02
30 31 8.429237 AACCACAAATAGGATTGGTAATTGAA 57.571 30.769 0.00 0.00 41.68 2.69
31 32 8.429237 AAACCACAAATAGGATTGGTAATTGA 57.571 30.769 0.00 0.00 41.68 2.57
32 33 8.934825 CAAAACCACAAATAGGATTGGTAATTG 58.065 33.333 0.00 0.00 41.68 2.32
33 34 7.606073 GCAAAACCACAAATAGGATTGGTAATT 59.394 33.333 0.00 0.00 41.68 1.40
34 35 7.038373 AGCAAAACCACAAATAGGATTGGTAAT 60.038 33.333 0.00 0.00 41.68 1.89
35 36 6.268847 AGCAAAACCACAAATAGGATTGGTAA 59.731 34.615 0.00 0.00 41.68 2.85
36 37 5.777732 AGCAAAACCACAAATAGGATTGGTA 59.222 36.000 0.00 0.00 41.68 3.25
37 38 4.592778 AGCAAAACCACAAATAGGATTGGT 59.407 37.500 0.00 0.00 44.52 3.67
38 39 5.151297 AGCAAAACCACAAATAGGATTGG 57.849 39.130 0.00 0.00 34.56 3.16
39 40 7.872483 AGTTTAGCAAAACCACAAATAGGATTG 59.128 33.333 0.00 0.00 45.11 2.67
40 41 7.962441 AGTTTAGCAAAACCACAAATAGGATT 58.038 30.769 0.00 0.00 45.11 3.01
41 42 7.539034 AGTTTAGCAAAACCACAAATAGGAT 57.461 32.000 0.00 0.00 45.11 3.24
42 43 6.969993 AGTTTAGCAAAACCACAAATAGGA 57.030 33.333 0.00 0.00 45.11 2.94
43 44 6.983890 ACAAGTTTAGCAAAACCACAAATAGG 59.016 34.615 0.00 0.00 45.11 2.57
44 45 7.491048 ACACAAGTTTAGCAAAACCACAAATAG 59.509 33.333 0.00 0.00 45.11 1.73
45 46 7.324178 ACACAAGTTTAGCAAAACCACAAATA 58.676 30.769 0.00 0.00 45.11 1.40
46 47 6.169800 ACACAAGTTTAGCAAAACCACAAAT 58.830 32.000 0.00 0.00 45.11 2.32
47 48 5.542779 ACACAAGTTTAGCAAAACCACAAA 58.457 33.333 0.00 0.00 45.11 2.83
48 49 5.140747 ACACAAGTTTAGCAAAACCACAA 57.859 34.783 0.00 0.00 45.11 3.33
49 50 4.673061 CGACACAAGTTTAGCAAAACCACA 60.673 41.667 0.00 0.00 45.11 4.17
50 51 3.789224 CGACACAAGTTTAGCAAAACCAC 59.211 43.478 0.00 0.00 45.11 4.16
51 52 3.690139 TCGACACAAGTTTAGCAAAACCA 59.310 39.130 0.00 0.00 45.11 3.67
52 53 4.281525 TCGACACAAGTTTAGCAAAACC 57.718 40.909 0.00 0.00 45.11 3.27
53 54 4.675114 CCATCGACACAAGTTTAGCAAAAC 59.325 41.667 0.00 0.00 44.47 2.43
54 55 4.336993 ACCATCGACACAAGTTTAGCAAAA 59.663 37.500 0.00 0.00 0.00 2.44
55 56 3.880490 ACCATCGACACAAGTTTAGCAAA 59.120 39.130 0.00 0.00 0.00 3.68
56 57 3.472652 ACCATCGACACAAGTTTAGCAA 58.527 40.909 0.00 0.00 0.00 3.91
57 58 3.064207 GACCATCGACACAAGTTTAGCA 58.936 45.455 0.00 0.00 0.00 3.49
58 59 3.326747 AGACCATCGACACAAGTTTAGC 58.673 45.455 0.00 0.00 0.00 3.09
59 60 7.009631 CAGATTAGACCATCGACACAAGTTTAG 59.990 40.741 0.00 0.00 0.00 1.85
60 61 6.811665 CAGATTAGACCATCGACACAAGTTTA 59.188 38.462 0.00 0.00 0.00 2.01
61 62 5.639506 CAGATTAGACCATCGACACAAGTTT 59.360 40.000 0.00 0.00 0.00 2.66
62 63 5.171476 CAGATTAGACCATCGACACAAGTT 58.829 41.667 0.00 0.00 0.00 2.66
63 64 4.220821 ACAGATTAGACCATCGACACAAGT 59.779 41.667 0.00 0.00 0.00 3.16
64 65 4.748892 ACAGATTAGACCATCGACACAAG 58.251 43.478 0.00 0.00 0.00 3.16
65 66 4.801330 ACAGATTAGACCATCGACACAA 57.199 40.909 0.00 0.00 0.00 3.33
66 67 4.801330 AACAGATTAGACCATCGACACA 57.199 40.909 0.00 0.00 0.00 3.72
67 68 5.892568 ACTAACAGATTAGACCATCGACAC 58.107 41.667 1.17 0.00 40.38 3.67
68 69 6.525578 AACTAACAGATTAGACCATCGACA 57.474 37.500 1.17 0.00 40.38 4.35
69 70 7.829378 AAAACTAACAGATTAGACCATCGAC 57.171 36.000 1.17 0.00 40.38 4.20
70 71 8.746530 ACTAAAACTAACAGATTAGACCATCGA 58.253 33.333 1.17 0.00 40.38 3.59
71 72 8.928270 ACTAAAACTAACAGATTAGACCATCG 57.072 34.615 1.17 0.00 40.38 3.84
95 96 9.780186 AAGTTTATTTAGTGAGCCATAGGATAC 57.220 33.333 0.00 0.00 0.00 2.24
112 113 8.126700 CGGCCTTTCGTCATTATAAGTTTATTT 58.873 33.333 0.00 0.00 0.00 1.40
113 114 7.636326 CGGCCTTTCGTCATTATAAGTTTATT 58.364 34.615 0.00 0.00 0.00 1.40
114 115 6.293244 GCGGCCTTTCGTCATTATAAGTTTAT 60.293 38.462 0.00 0.00 0.00 1.40
115 116 5.006941 GCGGCCTTTCGTCATTATAAGTTTA 59.993 40.000 0.00 0.00 0.00 2.01
116 117 4.201881 GCGGCCTTTCGTCATTATAAGTTT 60.202 41.667 0.00 0.00 0.00 2.66
117 118 3.311596 GCGGCCTTTCGTCATTATAAGTT 59.688 43.478 0.00 0.00 0.00 2.66
118 119 2.870411 GCGGCCTTTCGTCATTATAAGT 59.130 45.455 0.00 0.00 0.00 2.24
119 120 3.059597 CAGCGGCCTTTCGTCATTATAAG 60.060 47.826 0.00 0.00 0.00 1.73
120 121 2.869801 CAGCGGCCTTTCGTCATTATAA 59.130 45.455 0.00 0.00 0.00 0.98
121 122 2.479837 CAGCGGCCTTTCGTCATTATA 58.520 47.619 0.00 0.00 0.00 0.98
122 123 1.299541 CAGCGGCCTTTCGTCATTAT 58.700 50.000 0.00 0.00 0.00 1.28
123 124 1.366111 GCAGCGGCCTTTCGTCATTA 61.366 55.000 0.00 0.00 0.00 1.90
124 125 2.690778 GCAGCGGCCTTTCGTCATT 61.691 57.895 0.00 0.00 0.00 2.57
125 126 3.127533 GCAGCGGCCTTTCGTCAT 61.128 61.111 0.00 0.00 0.00 3.06
126 127 4.314440 AGCAGCGGCCTTTCGTCA 62.314 61.111 4.82 0.00 42.56 4.35
127 128 3.793144 CAGCAGCGGCCTTTCGTC 61.793 66.667 4.82 0.00 42.56 4.20
128 129 3.612247 ATCAGCAGCGGCCTTTCGT 62.612 57.895 4.82 0.00 42.56 3.85
129 130 2.821366 ATCAGCAGCGGCCTTTCG 60.821 61.111 4.82 0.00 42.56 3.46
130 131 2.768492 CCATCAGCAGCGGCCTTTC 61.768 63.158 4.82 0.00 42.56 2.62
131 132 2.753043 CCATCAGCAGCGGCCTTT 60.753 61.111 4.82 0.00 42.56 3.11
132 133 4.809496 CCCATCAGCAGCGGCCTT 62.809 66.667 4.82 0.00 42.56 4.35
136 137 3.982316 TTCAGCCCATCAGCAGCGG 62.982 63.158 0.00 0.00 34.23 5.52
137 138 1.381928 ATTTCAGCCCATCAGCAGCG 61.382 55.000 0.00 0.00 34.23 5.18
138 139 0.822164 AATTTCAGCCCATCAGCAGC 59.178 50.000 0.00 0.00 34.23 5.25
139 140 3.604875 AAAATTTCAGCCCATCAGCAG 57.395 42.857 0.00 0.00 34.23 4.24
157 158 1.000385 CGCAATGAGGCCTGTGAAAAA 60.000 47.619 12.00 0.00 0.00 1.94
158 159 0.597568 CGCAATGAGGCCTGTGAAAA 59.402 50.000 12.00 0.00 0.00 2.29
159 160 0.537143 ACGCAATGAGGCCTGTGAAA 60.537 50.000 12.00 0.00 0.00 2.69
160 161 0.537143 AACGCAATGAGGCCTGTGAA 60.537 50.000 12.00 0.00 0.00 3.18
161 162 0.537143 AAACGCAATGAGGCCTGTGA 60.537 50.000 12.00 0.00 0.00 3.58
162 163 0.387622 CAAACGCAATGAGGCCTGTG 60.388 55.000 12.00 5.71 0.00 3.66
163 164 0.823356 ACAAACGCAATGAGGCCTGT 60.823 50.000 12.00 0.00 0.00 4.00
164 165 0.387622 CACAAACGCAATGAGGCCTG 60.388 55.000 12.00 0.00 0.00 4.85
165 166 0.823356 ACACAAACGCAATGAGGCCT 60.823 50.000 3.86 3.86 0.00 5.19
166 167 0.664166 CACACAAACGCAATGAGGCC 60.664 55.000 0.00 0.00 0.00 5.19
167 168 1.277495 GCACACAAACGCAATGAGGC 61.277 55.000 0.00 0.00 0.00 4.70
168 169 0.030504 TGCACACAAACGCAATGAGG 59.969 50.000 0.00 0.00 34.59 3.86
169 170 2.054687 ATGCACACAAACGCAATGAG 57.945 45.000 0.00 0.00 42.37 2.90
170 171 2.551887 ACTATGCACACAAACGCAATGA 59.448 40.909 0.00 0.00 42.37 2.57
171 172 2.932498 ACTATGCACACAAACGCAATG 58.068 42.857 0.00 0.00 42.37 2.82
172 173 3.641437 AACTATGCACACAAACGCAAT 57.359 38.095 0.00 0.00 42.37 3.56
173 174 4.757799 ATAACTATGCACACAAACGCAA 57.242 36.364 0.00 0.00 42.37 4.85
174 175 4.023622 ACAATAACTATGCACACAAACGCA 60.024 37.500 0.00 0.00 43.45 5.24
175 176 4.320690 CACAATAACTATGCACACAAACGC 59.679 41.667 0.00 0.00 0.00 4.84
176 177 5.684850 TCACAATAACTATGCACACAAACG 58.315 37.500 0.00 0.00 0.00 3.60
177 178 6.088085 GCTTCACAATAACTATGCACACAAAC 59.912 38.462 0.00 0.00 0.00 2.93
178 179 6.148948 GCTTCACAATAACTATGCACACAAA 58.851 36.000 0.00 0.00 0.00 2.83
179 180 5.335583 GGCTTCACAATAACTATGCACACAA 60.336 40.000 0.00 0.00 0.00 3.33
180 181 4.155826 GGCTTCACAATAACTATGCACACA 59.844 41.667 0.00 0.00 0.00 3.72
181 182 4.396166 AGGCTTCACAATAACTATGCACAC 59.604 41.667 0.00 0.00 0.00 3.82
182 183 4.395854 CAGGCTTCACAATAACTATGCACA 59.604 41.667 0.00 0.00 0.00 4.57
183 184 4.396166 ACAGGCTTCACAATAACTATGCAC 59.604 41.667 0.00 0.00 0.00 4.57
184 185 4.588899 ACAGGCTTCACAATAACTATGCA 58.411 39.130 0.00 0.00 0.00 3.96
185 186 4.260375 CGACAGGCTTCACAATAACTATGC 60.260 45.833 0.00 0.00 0.00 3.14
186 187 4.870426 ACGACAGGCTTCACAATAACTATG 59.130 41.667 0.00 0.00 0.00 2.23
187 188 5.086104 ACGACAGGCTTCACAATAACTAT 57.914 39.130 0.00 0.00 0.00 2.12
188 189 4.491676 GACGACAGGCTTCACAATAACTA 58.508 43.478 0.00 0.00 0.00 2.24
189 190 3.326747 GACGACAGGCTTCACAATAACT 58.673 45.455 0.00 0.00 0.00 2.24
190 191 2.092211 CGACGACAGGCTTCACAATAAC 59.908 50.000 0.00 0.00 0.00 1.89
191 192 2.333926 CGACGACAGGCTTCACAATAA 58.666 47.619 0.00 0.00 0.00 1.40
192 193 1.990799 CGACGACAGGCTTCACAATA 58.009 50.000 0.00 0.00 0.00 1.90
193 194 1.291877 GCGACGACAGGCTTCACAAT 61.292 55.000 0.00 0.00 0.00 2.71
194 195 1.954146 GCGACGACAGGCTTCACAA 60.954 57.895 0.00 0.00 0.00 3.33
195 196 2.355837 GCGACGACAGGCTTCACA 60.356 61.111 0.00 0.00 0.00 3.58
196 197 2.049063 AGCGACGACAGGCTTCAC 60.049 61.111 0.00 0.00 35.61 3.18
197 198 2.049156 CAGCGACGACAGGCTTCA 60.049 61.111 0.00 0.00 37.41 3.02
198 199 2.811317 CCAGCGACGACAGGCTTC 60.811 66.667 0.00 0.00 37.41 3.86
199 200 3.288308 CTCCAGCGACGACAGGCTT 62.288 63.158 0.00 0.00 37.41 4.35
200 201 3.753434 CTCCAGCGACGACAGGCT 61.753 66.667 0.00 0.00 40.90 4.58
202 203 3.978723 CTGCTCCAGCGACGACAGG 62.979 68.421 0.00 0.00 45.83 4.00
203 204 2.477972 TTCTGCTCCAGCGACGACAG 62.478 60.000 0.00 0.00 45.83 3.51
204 205 2.477972 CTTCTGCTCCAGCGACGACA 62.478 60.000 0.00 0.00 45.83 4.35
205 206 1.803519 CTTCTGCTCCAGCGACGAC 60.804 63.158 0.00 0.00 45.83 4.34
206 207 2.568612 CTTCTGCTCCAGCGACGA 59.431 61.111 0.00 0.00 45.83 4.20
207 208 2.507992 CCTTCTGCTCCAGCGACG 60.508 66.667 0.00 0.00 45.83 5.12
208 209 1.605058 TACCCTTCTGCTCCAGCGAC 61.605 60.000 0.00 0.00 45.83 5.19
209 210 1.304962 TACCCTTCTGCTCCAGCGA 60.305 57.895 0.00 0.00 45.83 4.93
210 211 1.142748 CTACCCTTCTGCTCCAGCG 59.857 63.158 0.00 0.00 45.83 5.18
211 212 0.615850 AACTACCCTTCTGCTCCAGC 59.384 55.000 0.00 0.00 42.50 4.85
212 213 2.093764 CAGAACTACCCTTCTGCTCCAG 60.094 54.545 0.00 0.00 40.51 3.86
213 214 1.902508 CAGAACTACCCTTCTGCTCCA 59.097 52.381 0.00 0.00 40.51 3.86
214 215 2.180276 TCAGAACTACCCTTCTGCTCC 58.820 52.381 4.37 0.00 44.73 4.70
215 216 5.538433 AGATATCAGAACTACCCTTCTGCTC 59.462 44.000 5.32 2.47 44.73 4.26
216 217 5.463154 AGATATCAGAACTACCCTTCTGCT 58.537 41.667 5.32 0.00 44.73 4.24
217 218 5.279256 GGAGATATCAGAACTACCCTTCTGC 60.279 48.000 5.32 0.00 44.73 4.26
218 219 5.245075 GGGAGATATCAGAACTACCCTTCTG 59.755 48.000 5.32 3.01 45.94 3.02
219 220 5.399113 GGGAGATATCAGAACTACCCTTCT 58.601 45.833 5.32 0.00 33.99 2.85
220 221 4.218852 CGGGAGATATCAGAACTACCCTTC 59.781 50.000 5.32 0.00 34.55 3.46
221 222 4.153411 CGGGAGATATCAGAACTACCCTT 58.847 47.826 5.32 0.00 34.55 3.95
222 223 3.140519 ACGGGAGATATCAGAACTACCCT 59.859 47.826 5.32 0.00 34.55 4.34
223 224 3.498334 ACGGGAGATATCAGAACTACCC 58.502 50.000 5.32 0.00 31.42 3.69
224 225 4.828387 AGAACGGGAGATATCAGAACTACC 59.172 45.833 5.32 0.00 0.00 3.18
225 226 5.531659 TCAGAACGGGAGATATCAGAACTAC 59.468 44.000 5.32 0.00 0.00 2.73
226 227 5.691896 TCAGAACGGGAGATATCAGAACTA 58.308 41.667 5.32 0.00 0.00 2.24
227 228 4.537751 TCAGAACGGGAGATATCAGAACT 58.462 43.478 5.32 0.00 0.00 3.01
228 229 4.920640 TCAGAACGGGAGATATCAGAAC 57.079 45.455 5.32 0.00 0.00 3.01
229 230 6.485830 AATTCAGAACGGGAGATATCAGAA 57.514 37.500 5.32 0.00 0.00 3.02
230 231 6.778069 AGTAATTCAGAACGGGAGATATCAGA 59.222 38.462 5.32 0.00 0.00 3.27
231 232 6.865726 CAGTAATTCAGAACGGGAGATATCAG 59.134 42.308 5.32 0.00 0.00 2.90
259 260 4.398044 ACGCAGGAACAAAAACCATATAGG 59.602 41.667 0.00 0.00 45.67 2.57
274 275 2.364002 TCGATGGATAATCACGCAGGAA 59.636 45.455 0.00 0.00 34.68 3.36
293 294 1.273606 ACCCAAGATAGATGGCGATCG 59.726 52.381 11.69 11.69 36.58 3.69
403 404 0.704076 AATTCCACTGCAGGGGCTAA 59.296 50.000 31.32 20.75 41.91 3.09
506 512 5.670792 ATAGAGGTCAATTTGGTACGACA 57.329 39.130 0.00 0.00 0.00 4.35
596 602 8.812329 CAAATTGACGTGTATCCTTTTCAAAAA 58.188 29.630 0.00 0.00 0.00 1.94
597 603 7.043059 GCAAATTGACGTGTATCCTTTTCAAAA 60.043 33.333 0.00 0.00 0.00 2.44
598 604 6.419413 GCAAATTGACGTGTATCCTTTTCAAA 59.581 34.615 0.00 0.00 0.00 2.69
601 607 5.457140 TGCAAATTGACGTGTATCCTTTTC 58.543 37.500 0.00 0.00 0.00 2.29
604 610 4.615912 GCTTGCAAATTGACGTGTATCCTT 60.616 41.667 0.00 0.00 0.00 3.36
724 732 2.721797 CGCGATGACTTTTCAGGTTTCG 60.722 50.000 0.00 0.00 34.35 3.46
740 748 0.392998 AGAAATGCCTGGAACGCGAT 60.393 50.000 15.93 0.00 0.00 4.58
751 759 5.853282 GTGCATTATTCACGATAGAAATGCC 59.147 40.000 19.08 11.37 39.36 4.40
775 783 1.722011 ATCGTTCTACCAAGTTGCCG 58.278 50.000 0.00 0.00 0.00 5.69
791 799 1.957877 GGAGAGAGGGGTTCTGTATCG 59.042 57.143 0.00 0.00 35.87 2.92
801 809 2.440430 TCGCGAAGGAGAGAGGGG 60.440 66.667 6.20 0.00 0.00 4.79
815 824 3.712907 TTGGGGCCTACCACTCGC 61.713 66.667 0.84 0.00 41.53 5.03
919 932 1.672356 GGGCACATCAGCGTCAAGT 60.672 57.895 0.00 0.00 34.64 3.16
1023 1040 2.548127 GAACCCGATTGCTTGCTGGC 62.548 60.000 0.00 0.00 0.00 4.85
1046 1069 2.611292 CCGCAAAAGCTAGAGGATCAAG 59.389 50.000 0.00 0.00 37.82 3.02
1083 1106 1.693606 CCCTCCATGGCAAACAAAACT 59.306 47.619 6.96 0.00 0.00 2.66
1084 1107 1.691434 TCCCTCCATGGCAAACAAAAC 59.309 47.619 6.96 0.00 0.00 2.43
1085 1108 1.969923 CTCCCTCCATGGCAAACAAAA 59.030 47.619 6.96 0.00 0.00 2.44
1086 1109 1.631405 CTCCCTCCATGGCAAACAAA 58.369 50.000 6.96 0.00 0.00 2.83
1087 1110 0.251742 CCTCCCTCCATGGCAAACAA 60.252 55.000 6.96 0.00 0.00 2.83
1131 1154 2.608988 AGCACCTCCCAGTCCCAG 60.609 66.667 0.00 0.00 0.00 4.45
1176 1199 4.554036 GATGCGGCCCTGGTCTCC 62.554 72.222 0.00 0.00 0.00 3.71
1237 1261 3.219928 GAGAGCGGGCTGATCGGA 61.220 66.667 5.48 0.00 38.28 4.55
1265 1289 0.859232 CACGAGTGGAAACCGAAGTG 59.141 55.000 0.00 0.00 0.00 3.16
1295 1319 1.202020 GCGCGATCAATTGCAGTTACA 60.202 47.619 12.10 0.00 37.01 2.41
1351 1375 1.079819 CTTGTGACGGACGAGGCAT 60.080 57.895 0.00 0.00 32.82 4.40
1431 1461 3.181456 CCTCATCCTCTTGGGTTGATCTC 60.181 52.174 0.00 0.00 41.40 2.75
1515 1545 4.052229 ACCTCCTTGGCGTCGTCG 62.052 66.667 0.00 0.00 40.22 5.12
1517 1547 4.003788 CCACCTCCTTGGCGTCGT 62.004 66.667 0.00 0.00 40.22 4.34
1568 1598 2.665603 GAAGCGCTGACTCCCCTT 59.334 61.111 12.58 0.00 0.00 3.95
1571 1601 2.185608 GAGGAAGCGCTGACTCCC 59.814 66.667 23.80 14.92 0.00 4.30
1580 1610 1.281899 GAATTCGTGAGGAGGAAGCG 58.718 55.000 0.00 0.00 29.78 4.68
1934 1968 7.627340 CGAGTGTTTGTAGTGTGTTTCTAAAT 58.373 34.615 0.00 0.00 0.00 1.40
1969 2007 0.948623 TATGCGGTGAGTGTGTGTGC 60.949 55.000 0.00 0.00 0.00 4.57
1970 2008 0.790207 GTATGCGGTGAGTGTGTGTG 59.210 55.000 0.00 0.00 0.00 3.82
2003 2042 1.671328 CTCGTGAAGATGCTCGTAGGA 59.329 52.381 0.00 0.00 0.00 2.94
2004 2043 1.671328 TCTCGTGAAGATGCTCGTAGG 59.329 52.381 0.00 0.00 0.00 3.18
2008 2047 2.788233 CTCAATCTCGTGAAGATGCTCG 59.212 50.000 0.00 0.00 44.26 5.03
2042 2081 4.200838 TGTGGCGACTTCATTAATCTGA 57.799 40.909 0.00 0.00 0.00 3.27
2049 2088 1.006832 GCGTATGTGGCGACTTCATT 58.993 50.000 0.00 0.00 0.00 2.57
2051 2090 0.037697 AAGCGTATGTGGCGACTTCA 60.038 50.000 0.00 0.00 35.00 3.02
2066 2105 2.431942 ACCGGCAACTACGAAGCG 60.432 61.111 0.00 0.00 0.00 4.68
2079 2118 3.964875 GTGTTGGCTGTGCACCGG 61.965 66.667 15.69 0.00 0.00 5.28
2097 2202 3.442273 TCAAATCCGGGAAGAAAAATCCG 59.558 43.478 0.00 0.00 41.90 4.18
2221 2326 1.977854 TCAACTTCAGCCAGGCTTCTA 59.022 47.619 12.86 0.00 36.40 2.10
2239 2344 5.183522 TCTGCACAAATCAACAAGCATATCA 59.816 36.000 0.00 0.00 0.00 2.15
2283 2396 0.532573 GGTTCAGCCTCGATGTCTGA 59.467 55.000 9.51 9.51 35.30 3.27
2355 2468 0.179145 CGTCGTAGAAGCCACCGAAT 60.179 55.000 0.00 0.00 39.69 3.34
2384 2497 0.462047 AGTTGAATCGCGGGTGGATC 60.462 55.000 6.13 0.00 0.00 3.36
2385 2498 0.462047 GAGTTGAATCGCGGGTGGAT 60.462 55.000 6.13 0.00 0.00 3.41
2386 2499 1.079405 GAGTTGAATCGCGGGTGGA 60.079 57.895 6.13 0.00 0.00 4.02
2389 2503 2.125673 CCGAGTTGAATCGCGGGT 60.126 61.111 6.13 0.00 44.57 5.28
2675 2825 4.756642 CCAGCACAACGATATGGACATTAT 59.243 41.667 0.00 0.00 32.55 1.28
2676 2826 4.126437 CCAGCACAACGATATGGACATTA 58.874 43.478 0.00 0.00 32.55 1.90
2677 2827 2.945008 CCAGCACAACGATATGGACATT 59.055 45.455 0.00 0.00 32.55 2.71
2678 2828 2.170397 TCCAGCACAACGATATGGACAT 59.830 45.455 0.00 0.00 35.16 3.06
2679 2829 1.552792 TCCAGCACAACGATATGGACA 59.447 47.619 0.00 0.00 35.16 4.02
2680 2830 2.309528 TCCAGCACAACGATATGGAC 57.690 50.000 0.00 0.00 35.16 4.02
2681 2831 2.027653 TGTTCCAGCACAACGATATGGA 60.028 45.455 0.00 0.00 38.26 3.41
2686 2837 1.237285 GCCTGTTCCAGCACAACGAT 61.237 55.000 0.00 0.00 0.00 3.73
2703 2854 5.526111 TGTACTGTGTTAGAAAAACAGAGCC 59.474 40.000 15.21 6.64 43.02 4.70
2730 2881 4.202121 ACCCTGTATATGTGAGCAACTACG 60.202 45.833 0.00 0.00 0.00 3.51
2731 2882 5.277857 ACCCTGTATATGTGAGCAACTAC 57.722 43.478 0.00 0.00 0.00 2.73
2735 2886 4.682778 GGTACCCTGTATATGTGAGCAA 57.317 45.455 0.00 0.00 0.00 3.91
2751 2902 6.954352 ATCTTGGAGATTTATAGGGGTACC 57.046 41.667 2.17 2.17 39.14 3.34
2752 2903 8.667592 AGTATCTTGGAGATTTATAGGGGTAC 57.332 38.462 0.00 0.00 36.20 3.34
2753 2904 9.765295 GTAGTATCTTGGAGATTTATAGGGGTA 57.235 37.037 0.00 0.00 36.20 3.69
2755 2906 8.903059 AGTAGTATCTTGGAGATTTATAGGGG 57.097 38.462 0.00 0.00 36.20 4.79
2764 2915 9.427821 ACACAATTCTAGTAGTATCTTGGAGAT 57.572 33.333 0.00 0.00 38.70 2.75
2765 2916 8.824756 ACACAATTCTAGTAGTATCTTGGAGA 57.175 34.615 0.00 0.00 0.00 3.71
2766 2917 9.522804 GAACACAATTCTAGTAGTATCTTGGAG 57.477 37.037 0.00 0.00 0.00 3.86
2767 2918 9.031537 TGAACACAATTCTAGTAGTATCTTGGA 57.968 33.333 0.00 0.00 0.00 3.53
2768 2919 9.823647 ATGAACACAATTCTAGTAGTATCTTGG 57.176 33.333 0.00 0.00 0.00 3.61
2770 2921 9.823647 CCATGAACACAATTCTAGTAGTATCTT 57.176 33.333 0.00 0.00 0.00 2.40
2771 2922 7.928706 GCCATGAACACAATTCTAGTAGTATCT 59.071 37.037 0.00 0.00 0.00 1.98
2772 2923 7.710907 TGCCATGAACACAATTCTAGTAGTATC 59.289 37.037 0.00 0.00 0.00 2.24
2773 2924 7.495934 GTGCCATGAACACAATTCTAGTAGTAT 59.504 37.037 12.37 0.00 37.96 2.12
2774 2925 6.816640 GTGCCATGAACACAATTCTAGTAGTA 59.183 38.462 12.37 0.00 37.96 1.82
2775 2926 5.643777 GTGCCATGAACACAATTCTAGTAGT 59.356 40.000 12.37 0.00 37.96 2.73
2776 2927 5.877012 AGTGCCATGAACACAATTCTAGTAG 59.123 40.000 17.63 0.00 40.59 2.57
2777 2928 5.804639 AGTGCCATGAACACAATTCTAGTA 58.195 37.500 17.63 0.00 40.59 1.82
2778 2929 4.655963 AGTGCCATGAACACAATTCTAGT 58.344 39.130 17.63 0.00 40.59 2.57
2779 2930 4.940046 AGAGTGCCATGAACACAATTCTAG 59.060 41.667 17.63 0.00 40.59 2.43
2780 2931 4.910195 AGAGTGCCATGAACACAATTCTA 58.090 39.130 17.63 0.00 40.59 2.10
2781 2932 3.759581 AGAGTGCCATGAACACAATTCT 58.240 40.909 17.63 10.70 40.59 2.40
2782 2933 4.937620 TCTAGAGTGCCATGAACACAATTC 59.062 41.667 17.63 9.05 40.59 2.17
2783 2934 4.910195 TCTAGAGTGCCATGAACACAATT 58.090 39.130 17.63 7.77 40.59 2.32
2784 2935 4.511527 CTCTAGAGTGCCATGAACACAAT 58.488 43.478 11.89 9.91 40.59 2.71
2785 2936 3.306989 CCTCTAGAGTGCCATGAACACAA 60.307 47.826 18.42 5.46 40.59 3.33
2786 2937 2.234661 CCTCTAGAGTGCCATGAACACA 59.765 50.000 18.42 0.00 40.59 3.72
2787 2938 2.419297 CCCTCTAGAGTGCCATGAACAC 60.419 54.545 18.42 9.98 38.35 3.32
2788 2939 1.833630 CCCTCTAGAGTGCCATGAACA 59.166 52.381 18.42 0.00 0.00 3.18
2789 2940 1.834263 ACCCTCTAGAGTGCCATGAAC 59.166 52.381 18.42 0.00 0.00 3.18
2790 2941 1.833630 CACCCTCTAGAGTGCCATGAA 59.166 52.381 18.42 0.00 0.00 2.57
2791 2942 1.273267 ACACCCTCTAGAGTGCCATGA 60.273 52.381 18.42 0.00 37.51 3.07
2792 2943 1.134580 CACACCCTCTAGAGTGCCATG 60.135 57.143 18.42 10.72 37.51 3.66
2793 2944 1.198713 CACACCCTCTAGAGTGCCAT 58.801 55.000 18.42 0.00 37.51 4.40
2794 2945 0.904865 CCACACCCTCTAGAGTGCCA 60.905 60.000 18.42 0.00 37.51 4.92
2795 2946 0.905337 ACCACACCCTCTAGAGTGCC 60.905 60.000 18.42 0.00 37.51 5.01
2796 2947 0.533032 GACCACACCCTCTAGAGTGC 59.467 60.000 18.42 0.00 37.51 4.40
2797 2948 1.821753 CTGACCACACCCTCTAGAGTG 59.178 57.143 18.42 13.85 39.93 3.51
2798 2949 1.711375 TCTGACCACACCCTCTAGAGT 59.289 52.381 18.42 0.00 0.00 3.24
2803 2954 0.543174 GAGGTCTGACCACACCCTCT 60.543 60.000 27.48 5.13 41.95 3.69
2925 3076 7.770801 TCATAATTCAGTTAACCACGAGATG 57.229 36.000 0.88 0.87 0.00 2.90
2980 3131 3.315191 CCCGCCTACCATCACTTTATTTG 59.685 47.826 0.00 0.00 0.00 2.32
2990 3141 0.250338 GACAATCCCCGCCTACCATC 60.250 60.000 0.00 0.00 0.00 3.51
3010 3161 4.987408 CAATTCCATTGTGGTATGAGCA 57.013 40.909 0.00 0.00 39.03 4.26
3113 3264 7.851228 TGGCTACTTCTTCTTGATTCTCAATA 58.149 34.615 0.00 0.00 35.59 1.90
3114 3265 6.715280 TGGCTACTTCTTCTTGATTCTCAAT 58.285 36.000 0.00 0.00 35.59 2.57
3148 3303 8.955061 TTCTTCGATTTGAATCTTTCATTGAC 57.045 30.769 2.58 0.00 39.84 3.18
3180 3335 4.105217 TCATCCTCTAATGGCACCATCATT 59.895 41.667 1.88 0.00 38.29 2.57
3181 3336 3.654321 TCATCCTCTAATGGCACCATCAT 59.346 43.478 1.88 0.00 35.31 2.45
3182 3337 3.047857 TCATCCTCTAATGGCACCATCA 58.952 45.455 1.88 0.00 35.31 3.07
3183 3338 3.777106 TCATCCTCTAATGGCACCATC 57.223 47.619 1.88 0.00 35.31 3.51
3184 3339 3.654321 TCATCATCCTCTAATGGCACCAT 59.346 43.478 0.00 0.00 38.46 3.55
3185 3340 3.047857 TCATCATCCTCTAATGGCACCA 58.952 45.455 0.00 0.00 0.00 4.17
3186 3341 3.406764 GTCATCATCCTCTAATGGCACC 58.593 50.000 0.00 0.00 0.00 5.01
3187 3342 3.062763 CGTCATCATCCTCTAATGGCAC 58.937 50.000 0.00 0.00 0.00 5.01
3193 3384 2.766263 AGTTGGCGTCATCATCCTCTAA 59.234 45.455 0.27 0.00 0.00 2.10
3222 3418 5.936956 CAGCAGAAAGATGGAAGAACTAAGT 59.063 40.000 0.00 0.00 0.00 2.24
3223 3419 6.419980 CAGCAGAAAGATGGAAGAACTAAG 57.580 41.667 0.00 0.00 0.00 2.18
3235 3431 4.263462 TGGTGACATAACCAGCAGAAAGAT 60.263 41.667 0.00 0.00 45.43 2.40
3297 3504 4.150359 TCTTCCAGTAGACCTCGTCTTTT 58.850 43.478 0.00 0.00 40.28 2.27
3312 3519 4.148825 CCGACCCGCCTCTTCCAG 62.149 72.222 0.00 0.00 0.00 3.86
3339 3546 1.959042 CAAGCGCCCAATCTGAGTAT 58.041 50.000 2.29 0.00 0.00 2.12
3406 3613 6.275618 ACATATTTATAGGGAGCAATGGAGGT 59.724 38.462 0.00 0.00 0.00 3.85
3414 3621 5.330233 TCTCGGACATATTTATAGGGAGCA 58.670 41.667 0.00 0.00 0.00 4.26
3420 3627 9.639601 TTTGCAGTATCTCGGACATATTTATAG 57.360 33.333 0.00 0.00 0.00 1.31
3427 3634 5.566826 GCCTATTTGCAGTATCTCGGACATA 60.567 44.000 0.00 0.00 0.00 2.29
3430 3637 3.060602 GCCTATTTGCAGTATCTCGGAC 58.939 50.000 0.00 0.00 0.00 4.79
3462 3669 4.632153 GGCTTCGATAAATAGCTTCCTCA 58.368 43.478 6.05 0.00 35.30 3.86
3463 3670 3.675698 CGGCTTCGATAAATAGCTTCCTC 59.324 47.826 6.05 0.00 35.30 3.71
3464 3671 3.555168 CCGGCTTCGATAAATAGCTTCCT 60.555 47.826 6.05 0.00 35.30 3.36
3465 3672 2.737252 CCGGCTTCGATAAATAGCTTCC 59.263 50.000 6.05 0.00 35.30 3.46
3467 3674 2.104281 ACCCGGCTTCGATAAATAGCTT 59.896 45.455 0.00 0.00 35.30 3.74
3468 3675 1.692519 ACCCGGCTTCGATAAATAGCT 59.307 47.619 0.00 0.00 35.30 3.32
3469 3676 2.067013 GACCCGGCTTCGATAAATAGC 58.933 52.381 0.00 0.00 35.61 2.97
3470 3677 2.325761 CGACCCGGCTTCGATAAATAG 58.674 52.381 16.49 0.00 38.85 1.73
3471 3678 1.000060 CCGACCCGGCTTCGATAAATA 60.000 52.381 21.60 0.00 41.17 1.40
3472 3679 0.249741 CCGACCCGGCTTCGATAAAT 60.250 55.000 21.60 0.00 41.17 1.40
3474 3681 2.809706 CCGACCCGGCTTCGATAA 59.190 61.111 21.60 0.00 41.17 1.75
3497 3704 5.612725 AGGATGCCTGAAAGTTTCAAAAA 57.387 34.783 18.55 7.79 39.58 1.94
3498 3705 5.612725 AAGGATGCCTGAAAGTTTCAAAA 57.387 34.783 18.55 8.11 39.58 2.44
3500 3707 4.261572 CGAAAGGATGCCTGAAAGTTTCAA 60.262 41.667 18.55 5.42 39.58 2.69
3501 3708 3.253188 CGAAAGGATGCCTGAAAGTTTCA 59.747 43.478 17.16 17.16 38.17 2.69
3502 3709 3.826466 CGAAAGGATGCCTGAAAGTTTC 58.174 45.455 8.75 8.75 32.13 2.78
3503 3710 2.029918 GCGAAAGGATGCCTGAAAGTTT 60.030 45.455 0.00 0.00 32.13 2.66
3505 3712 1.168714 GCGAAAGGATGCCTGAAAGT 58.831 50.000 0.00 0.00 32.13 2.66
3506 3713 1.131883 CTGCGAAAGGATGCCTGAAAG 59.868 52.381 0.00 0.00 32.13 2.62
3507 3714 1.167851 CTGCGAAAGGATGCCTGAAA 58.832 50.000 0.00 0.00 32.13 2.69
3508 3715 2.858622 CTGCGAAAGGATGCCTGAA 58.141 52.632 0.00 0.00 32.13 3.02
3509 3716 4.623814 CTGCGAAAGGATGCCTGA 57.376 55.556 0.00 0.00 32.13 3.86
3518 3725 0.175989 GTAGACCCCTCCTGCGAAAG 59.824 60.000 0.00 0.00 0.00 2.62
3519 3726 0.252103 AGTAGACCCCTCCTGCGAAA 60.252 55.000 0.00 0.00 0.00 3.46
3521 3728 0.183014 CTAGTAGACCCCTCCTGCGA 59.817 60.000 0.00 0.00 0.00 5.10
3522 3729 1.457009 GCTAGTAGACCCCTCCTGCG 61.457 65.000 0.00 0.00 0.00 5.18
3523 3730 0.105913 AGCTAGTAGACCCCTCCTGC 60.106 60.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.