Multiple sequence alignment - TraesCS1B01G174300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G174300 chr1B 100.000 4622 0 0 1 4622 312931132 312926511 0.000000e+00 8536.0
1 TraesCS1B01G174300 chr1B 92.284 985 74 2 3639 4622 385167264 385168247 0.000000e+00 1397.0
2 TraesCS1B01G174300 chr1B 92.449 980 65 5 3639 4610 289084684 289085662 0.000000e+00 1391.0
3 TraesCS1B01G174300 chr1B 100.000 48 0 0 2003 2050 312928628 312928675 6.370000e-14 89.8
4 TraesCS1B01G174300 chr1B 100.000 48 0 0 2458 2505 312929083 312929130 6.370000e-14 89.8
5 TraesCS1B01G174300 chr1B 100.000 30 0 0 2451 2480 312928620 312928591 6.460000e-04 56.5
6 TraesCS1B01G174300 chr1B 100.000 30 0 0 2513 2542 312928682 312928653 6.460000e-04 56.5
7 TraesCS1B01G174300 chr1B 100.000 29 0 0 2413 2441 312928589 312928561 2.000000e-03 54.7
8 TraesCS1B01G174300 chr1B 100.000 29 0 0 2544 2572 312928720 312928692 2.000000e-03 54.7
9 TraesCS1B01G174300 chr1D 89.721 1362 77 22 666 1994 218905061 218903730 0.000000e+00 1681.0
10 TraesCS1B01G174300 chr1D 92.105 684 44 5 2966 3644 218899322 218898644 0.000000e+00 955.0
11 TraesCS1B01G174300 chr1D 84.451 328 35 10 2063 2385 218899505 218899821 4.490000e-80 309.0
12 TraesCS1B01G174300 chr1D 96.324 136 5 0 539 674 218970827 218970692 1.670000e-54 224.0
13 TraesCS1B01G174300 chr1D 93.798 129 7 1 2594 2722 218899503 218899376 4.720000e-45 193.0
14 TraesCS1B01G174300 chr1A 93.641 1085 61 4 911 1994 281659485 281658408 0.000000e+00 1615.0
15 TraesCS1B01G174300 chr1A 87.572 692 48 11 2828 3515 281657487 281656830 0.000000e+00 767.0
16 TraesCS1B01G174300 chr1A 94.695 377 14 3 539 914 281661890 281661519 8.620000e-162 580.0
17 TraesCS1B01G174300 chr1A 85.502 538 52 7 2596 3131 281658003 281657490 5.260000e-149 538.0
18 TraesCS1B01G174300 chr1A 86.166 253 10 12 3394 3644 590279863 590279634 2.760000e-62 250.0
19 TraesCS1B01G174300 chr1A 89.623 106 11 0 3218 3323 590279967 590279862 8.070000e-28 135.0
20 TraesCS1B01G174300 chr1A 94.444 54 3 0 2433 2486 281658331 281658384 2.960000e-12 84.2
21 TraesCS1B01G174300 chr6B 93.496 984 64 0 3639 4622 308583110 308582127 0.000000e+00 1463.0
22 TraesCS1B01G174300 chr6B 95.248 505 22 1 3 505 705711667 705712171 0.000000e+00 798.0
23 TraesCS1B01G174300 chr6B 94.929 493 22 2 3 493 584009612 584009121 0.000000e+00 769.0
24 TraesCS1B01G174300 chr6B 94.024 502 27 2 1 500 58817196 58817696 0.000000e+00 758.0
25 TraesCS1B01G174300 chr3B 93.394 984 64 1 3639 4622 256203092 256204074 0.000000e+00 1456.0
26 TraesCS1B01G174300 chr3B 94.188 499 27 1 1 497 46042811 46043309 0.000000e+00 760.0
27 TraesCS1B01G174300 chr3D 93.299 985 58 3 3639 4622 268942732 268943709 0.000000e+00 1447.0
28 TraesCS1B01G174300 chr3A 92.886 984 69 1 3639 4622 724741278 724740296 0.000000e+00 1428.0
29 TraesCS1B01G174300 chr3A 93.227 502 31 2 1 500 427094038 427093538 0.000000e+00 736.0
30 TraesCS1B01G174300 chr3A 86.561 253 10 11 3394 3644 650962365 650962135 1.650000e-64 257.0
31 TraesCS1B01G174300 chr3A 92.157 102 7 1 3543 3644 8541940 8541840 4.820000e-30 143.0
32 TraesCS1B01G174300 chr3A 90.566 106 10 0 3218 3323 650962469 650962364 1.730000e-29 141.0
33 TraesCS1B01G174300 chr4B 92.690 985 71 1 3639 4622 25897223 25898207 0.000000e+00 1419.0
34 TraesCS1B01G174300 chr4B 92.487 985 72 2 3639 4622 73279928 73278945 0.000000e+00 1408.0
35 TraesCS1B01G174300 chr4B 92.608 974 62 7 3639 4610 634319452 634320417 0.000000e+00 1391.0
36 TraesCS1B01G174300 chr5B 95.783 498 19 1 1 496 666301766 666301269 0.000000e+00 802.0
37 TraesCS1B01G174300 chr5B 91.667 48 0 4 2388 2433 348582436 348582481 3.860000e-06 63.9
38 TraesCS1B01G174300 chr2B 95.783 498 19 1 1 496 729791964 729791467 0.000000e+00 802.0
39 TraesCS1B01G174300 chr2B 93.825 502 29 1 1 500 705330832 705331333 0.000000e+00 754.0
40 TraesCS1B01G174300 chr2B 93.600 500 30 1 4 501 87543146 87542647 0.000000e+00 745.0
41 TraesCS1B01G174300 chr2B 97.368 38 1 0 2388 2425 692462013 692462050 1.070000e-06 65.8
42 TraesCS1B01G174300 chr2B 91.489 47 3 1 2388 2434 794688308 794688353 3.860000e-06 63.9
43 TraesCS1B01G174300 chr2B 91.489 47 3 1 2388 2434 794797209 794797254 3.860000e-06 63.9
44 TraesCS1B01G174300 chr7A 86.166 253 11 11 3394 3644 4568860 4569090 7.680000e-63 252.0
45 TraesCS1B01G174300 chr7A 93.137 102 6 1 3543 3644 14991998 14992098 1.040000e-31 148.0
46 TraesCS1B01G174300 chr7A 90.566 106 10 0 3218 3323 4568756 4568861 1.730000e-29 141.0
47 TraesCS1B01G174300 chr7A 91.176 102 8 1 3543 3644 575487468 575487568 2.240000e-28 137.0
48 TraesCS1B01G174300 chr6A 86.166 253 11 11 3394 3644 56575232 56575002 7.680000e-63 252.0
49 TraesCS1B01G174300 chr6A 85.771 253 12 11 3394 3644 476969242 476969472 3.570000e-61 246.0
50 TraesCS1B01G174300 chr6A 85.375 253 13 11 3394 3644 473973742 473973972 1.660000e-59 241.0
51 TraesCS1B01G174300 chr6A 89.623 106 11 0 3218 3323 56575336 56575231 8.070000e-28 135.0
52 TraesCS1B01G174300 chr6A 89.623 106 11 0 3218 3323 476969138 476969243 8.070000e-28 135.0
53 TraesCS1B01G174300 chr6A 88.679 106 12 0 3218 3323 473973638 473973743 3.750000e-26 130.0
54 TraesCS1B01G174300 chr7B 90.909 55 5 0 2388 2442 105509142 105509088 1.780000e-09 75.0
55 TraesCS1B01G174300 chr2A 93.750 48 3 0 2387 2434 384891476 384891523 6.410000e-09 73.1
56 TraesCS1B01G174300 chr2A 93.617 47 3 0 2388 2434 714330073 714330119 2.310000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G174300 chr1B 312926511 312931132 4621 True 1751.68 8536 100.0000 1 4622 5 chr1B.!!$R1 4621
1 TraesCS1B01G174300 chr1B 385167264 385168247 983 False 1397.00 1397 92.2840 3639 4622 1 chr1B.!!$F2 983
2 TraesCS1B01G174300 chr1B 289084684 289085662 978 False 1391.00 1391 92.4490 3639 4610 1 chr1B.!!$F1 971
3 TraesCS1B01G174300 chr1D 218903730 218905061 1331 True 1681.00 1681 89.7210 666 1994 1 chr1D.!!$R1 1328
4 TraesCS1B01G174300 chr1D 218898644 218899503 859 True 574.00 955 92.9515 2594 3644 2 chr1D.!!$R3 1050
5 TraesCS1B01G174300 chr1A 281656830 281661890 5060 True 875.00 1615 90.3525 539 3515 4 chr1A.!!$R1 2976
6 TraesCS1B01G174300 chr6B 308582127 308583110 983 True 1463.00 1463 93.4960 3639 4622 1 chr6B.!!$R1 983
7 TraesCS1B01G174300 chr6B 705711667 705712171 504 False 798.00 798 95.2480 3 505 1 chr6B.!!$F2 502
8 TraesCS1B01G174300 chr6B 58817196 58817696 500 False 758.00 758 94.0240 1 500 1 chr6B.!!$F1 499
9 TraesCS1B01G174300 chr3B 256203092 256204074 982 False 1456.00 1456 93.3940 3639 4622 1 chr3B.!!$F2 983
10 TraesCS1B01G174300 chr3D 268942732 268943709 977 False 1447.00 1447 93.2990 3639 4622 1 chr3D.!!$F1 983
11 TraesCS1B01G174300 chr3A 724740296 724741278 982 True 1428.00 1428 92.8860 3639 4622 1 chr3A.!!$R3 983
12 TraesCS1B01G174300 chr3A 427093538 427094038 500 True 736.00 736 93.2270 1 500 1 chr3A.!!$R2 499
13 TraesCS1B01G174300 chr4B 25897223 25898207 984 False 1419.00 1419 92.6900 3639 4622 1 chr4B.!!$F1 983
14 TraesCS1B01G174300 chr4B 73278945 73279928 983 True 1408.00 1408 92.4870 3639 4622 1 chr4B.!!$R1 983
15 TraesCS1B01G174300 chr4B 634319452 634320417 965 False 1391.00 1391 92.6080 3639 4610 1 chr4B.!!$F2 971
16 TraesCS1B01G174300 chr2B 705330832 705331333 501 False 754.00 754 93.8250 1 500 1 chr2B.!!$F2 499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
527 530 0.031721 CCTAGCTAGGCGTTTACCCG 59.968 60.0 26.62 0.0 36.53 5.28 F
1226 3265 0.591659 GCTCGGTTTCTTGTGGGTTC 59.408 55.0 0.00 0.0 0.00 3.62 F
1825 3890 0.939106 GTTGCGGCATTGTTGACACC 60.939 55.0 2.28 0.0 0.00 4.16 F
2269 4339 0.398318 AGAGGGGAAGACACAAGTGC 59.602 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2251 4321 0.108585 TGCACTTGTGTCTTCCCCTC 59.891 55.0 2.61 0.0 0.00 4.30 R
2252 4322 0.179018 GTGCACTTGTGTCTTCCCCT 60.179 55.0 10.32 0.0 0.00 4.79 R
2915 5270 0.251341 AAGGTTGGCTGCTAACCCAG 60.251 55.0 35.05 0.0 46.93 4.45 R
4058 6427 0.253113 TGGTGTCCATGGGATCCAGA 60.253 55.0 15.23 0.0 36.75 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
211 212 2.584064 CATGACCTGCGCCCACTA 59.416 61.111 4.18 0.00 0.00 2.74
399 402 4.137872 CTTCGCCGGCCGTTCCTA 62.138 66.667 26.12 4.15 38.35 2.94
458 461 4.796495 GCGGCCGGATCTGGGTTT 62.796 66.667 29.38 0.00 0.00 3.27
505 508 2.361771 GGGACGGGTGGGAGTCTA 59.638 66.667 0.00 0.00 37.52 2.59
506 509 1.075450 GGGACGGGTGGGAGTCTAT 60.075 63.158 0.00 0.00 37.52 1.98
507 510 1.114119 GGGACGGGTGGGAGTCTATC 61.114 65.000 0.00 0.00 37.52 2.08
518 521 2.730382 GGAGTCTATCCCTAGCTAGGC 58.270 57.143 31.33 17.74 43.01 3.93
519 522 2.361789 GAGTCTATCCCTAGCTAGGCG 58.638 57.143 31.33 23.76 42.26 5.52
520 523 1.706305 AGTCTATCCCTAGCTAGGCGT 59.294 52.381 31.33 23.09 42.26 5.68
521 524 2.108601 AGTCTATCCCTAGCTAGGCGTT 59.891 50.000 31.33 20.77 42.26 4.84
522 525 2.892215 GTCTATCCCTAGCTAGGCGTTT 59.108 50.000 31.33 17.80 42.26 3.60
523 526 4.077822 GTCTATCCCTAGCTAGGCGTTTA 58.922 47.826 31.33 17.95 42.26 2.01
524 527 4.077822 TCTATCCCTAGCTAGGCGTTTAC 58.922 47.826 31.33 0.00 42.26 2.01
525 528 1.406903 TCCCTAGCTAGGCGTTTACC 58.593 55.000 31.33 0.00 42.26 2.85
526 529 0.391966 CCCTAGCTAGGCGTTTACCC 59.608 60.000 31.33 0.00 42.26 3.69
527 530 0.031721 CCTAGCTAGGCGTTTACCCG 59.968 60.000 26.62 0.00 36.53 5.28
535 538 3.128845 CGTTTACCCGCGGCCAAT 61.129 61.111 22.85 7.19 0.00 3.16
536 539 1.814586 CGTTTACCCGCGGCCAATA 60.815 57.895 22.85 6.06 0.00 1.90
537 540 1.367599 CGTTTACCCGCGGCCAATAA 61.368 55.000 22.85 12.24 0.00 1.40
546 549 2.034558 CCGCGGCCAATAAAAGATTCAT 59.965 45.455 14.67 0.00 0.00 2.57
549 552 3.003275 GCGGCCAATAAAAGATTCATCGA 59.997 43.478 2.24 0.00 0.00 3.59
576 579 4.686554 GTCGAGGATCATATTAGCCAACAC 59.313 45.833 0.00 0.00 33.17 3.32
601 604 3.065371 GCCTTTTGGACGATGATACCAAG 59.935 47.826 0.00 0.00 43.15 3.61
644 647 3.947910 AAGACATCACCAAATGCAAGG 57.052 42.857 0.00 0.00 0.00 3.61
856 860 6.381994 ACAGACAAATGAAGGCCATATTTGAT 59.618 34.615 29.96 20.62 41.81 2.57
857 861 7.560991 ACAGACAAATGAAGGCCATATTTGATA 59.439 33.333 29.96 2.12 41.81 2.15
858 862 7.864379 CAGACAAATGAAGGCCATATTTGATAC 59.136 37.037 29.96 22.61 41.81 2.24
971 3010 1.395635 TGAGCGCTCCGTTCCTAATA 58.604 50.000 33.23 8.85 36.32 0.98
982 3021 3.331150 CGTTCCTAATAACCAGCACACA 58.669 45.455 0.00 0.00 0.00 3.72
1226 3265 0.591659 GCTCGGTTTCTTGTGGGTTC 59.408 55.000 0.00 0.00 0.00 3.62
1227 3266 1.235724 CTCGGTTTCTTGTGGGTTCC 58.764 55.000 0.00 0.00 0.00 3.62
1239 3278 2.264794 GGTTCCGCGTGGATCTGT 59.735 61.111 20.33 0.00 45.91 3.41
1287 3326 3.083997 GGCTCCGTCTCCATGGGT 61.084 66.667 13.02 0.00 0.00 4.51
1392 3431 2.548057 TCAGGTCTGCATTTTGTTCGAC 59.452 45.455 0.00 0.00 0.00 4.20
1393 3432 2.290367 CAGGTCTGCATTTTGTTCGACA 59.710 45.455 0.00 0.00 0.00 4.35
1484 3529 9.967245 CGAATTTCATTAATCTACTCGTTGAAA 57.033 29.630 0.00 0.00 36.42 2.69
1536 3581 3.681897 CAGACATGCTCTAACCACTCAAC 59.318 47.826 0.00 0.00 0.00 3.18
1679 3744 1.164041 ACGCTTCCGGACCACAAAAG 61.164 55.000 1.83 0.00 39.22 2.27
1763 3828 7.390996 TGCATTTCCTGTTACCTAAAACGATAA 59.609 33.333 0.00 0.00 31.76 1.75
1767 3832 9.558396 TTTCCTGTTACCTAAAACGATAAAAGA 57.442 29.630 0.00 0.00 31.76 2.52
1768 3833 9.729281 TTCCTGTTACCTAAAACGATAAAAGAT 57.271 29.630 0.00 0.00 31.76 2.40
1810 3875 3.586100 ACCCAAACGGATTAATGTTGC 57.414 42.857 0.00 0.00 34.64 4.17
1825 3890 0.939106 GTTGCGGCATTGTTGACACC 60.939 55.000 2.28 0.00 0.00 4.16
1929 3999 9.269453 GTGTTCCTGAACTAGTTAAACATAAGT 57.731 33.333 19.63 0.00 41.67 2.24
1933 4003 9.841295 TCCTGAACTAGTTAAACATAAGTTTGT 57.159 29.630 8.42 0.00 46.84 2.83
1973 4043 9.796120 CTGTAACTAGAGTTAGGAAATCTGAAG 57.204 37.037 2.32 0.00 40.74 3.02
1991 4061 5.797934 TCTGAAGTTAGTTTTTGTTGTTGCG 59.202 36.000 0.00 0.00 0.00 4.85
1994 4064 6.809196 TGAAGTTAGTTTTTGTTGTTGCGATT 59.191 30.769 0.00 0.00 0.00 3.34
1995 4065 7.968956 TGAAGTTAGTTTTTGTTGTTGCGATTA 59.031 29.630 0.00 0.00 0.00 1.75
1996 4066 8.865590 AAGTTAGTTTTTGTTGTTGCGATTAT 57.134 26.923 0.00 0.00 0.00 1.28
1997 4067 8.280909 AGTTAGTTTTTGTTGTTGCGATTATG 57.719 30.769 0.00 0.00 0.00 1.90
1999 4069 5.837437 AGTTTTTGTTGTTGCGATTATGGA 58.163 33.333 0.00 0.00 0.00 3.41
2000 4070 5.689961 AGTTTTTGTTGTTGCGATTATGGAC 59.310 36.000 0.00 0.00 0.00 4.02
2001 4071 3.840890 TTGTTGTTGCGATTATGGACC 57.159 42.857 0.00 0.00 0.00 4.46
2002 4072 2.088423 TGTTGTTGCGATTATGGACCC 58.912 47.619 0.00 0.00 0.00 4.46
2004 4074 3.055021 TGTTGTTGCGATTATGGACCCTA 60.055 43.478 0.00 0.00 0.00 3.53
2005 4075 3.916359 TGTTGCGATTATGGACCCTAA 57.084 42.857 0.00 0.00 0.00 2.69
2006 4076 4.431416 TGTTGCGATTATGGACCCTAAT 57.569 40.909 1.95 1.95 0.00 1.73
2007 4077 4.385825 TGTTGCGATTATGGACCCTAATC 58.614 43.478 15.87 15.87 33.93 1.75
2008 4078 4.102524 TGTTGCGATTATGGACCCTAATCT 59.897 41.667 20.71 0.00 34.73 2.40
2010 4080 5.661056 TGCGATTATGGACCCTAATCTAG 57.339 43.478 20.71 11.53 34.73 2.43
2011 4081 5.330233 TGCGATTATGGACCCTAATCTAGA 58.670 41.667 20.71 0.00 34.73 2.43
2012 4082 5.778241 TGCGATTATGGACCCTAATCTAGAA 59.222 40.000 20.71 5.07 34.73 2.10
2014 4084 6.981559 GCGATTATGGACCCTAATCTAGAATC 59.018 42.308 20.71 5.77 35.56 2.52
2015 4085 7.147811 GCGATTATGGACCCTAATCTAGAATCT 60.148 40.741 20.71 0.00 36.30 2.40
2016 4086 8.194104 CGATTATGGACCCTAATCTAGAATCTG 58.806 40.741 20.71 5.62 36.30 2.90
2017 4087 8.980832 ATTATGGACCCTAATCTAGAATCTGT 57.019 34.615 0.00 0.00 0.00 3.41
2019 4089 9.892444 TTATGGACCCTAATCTAGAATCTGTAA 57.108 33.333 0.00 0.00 0.00 2.41
2020 4090 7.598759 TGGACCCTAATCTAGAATCTGTAAC 57.401 40.000 0.00 0.00 0.00 2.50
2026 4096 9.238368 CCCTAATCTAGAATCTGTAACTAGAGG 57.762 40.741 0.00 0.00 43.37 3.69
2050 4120 9.057089 AGGTTCTAGACACAGTGAAATAAAAAG 57.943 33.333 7.81 0.00 0.00 2.27
2051 4121 9.052759 GGTTCTAGACACAGTGAAATAAAAAGA 57.947 33.333 7.81 0.00 0.00 2.52
2056 4126 8.089115 AGACACAGTGAAATAAAAAGACTAGC 57.911 34.615 7.81 0.00 0.00 3.42
2057 4127 7.715249 AGACACAGTGAAATAAAAAGACTAGCA 59.285 33.333 7.81 0.00 0.00 3.49
2058 4128 8.396272 ACACAGTGAAATAAAAAGACTAGCAT 57.604 30.769 7.81 0.00 0.00 3.79
2060 4130 9.683069 CACAGTGAAATAAAAAGACTAGCATTT 57.317 29.630 0.00 0.00 0.00 2.32
2109 4179 8.742554 AAAAGACTAGCATTTTATTCCAAACG 57.257 30.769 4.19 0.00 0.00 3.60
2110 4180 6.436843 AGACTAGCATTTTATTCCAAACGG 57.563 37.500 0.00 0.00 0.00 4.44
2111 4181 5.357032 AGACTAGCATTTTATTCCAAACGGG 59.643 40.000 0.00 0.00 38.37 5.28
2112 4182 5.014202 ACTAGCATTTTATTCCAAACGGGT 58.986 37.500 0.00 0.00 38.11 5.28
2113 4183 6.181908 ACTAGCATTTTATTCCAAACGGGTA 58.818 36.000 0.00 0.00 38.11 3.69
2114 4184 5.986501 AGCATTTTATTCCAAACGGGTAA 57.013 34.783 0.00 0.00 38.11 2.85
2115 4185 5.961272 AGCATTTTATTCCAAACGGGTAAG 58.039 37.500 0.00 0.00 38.11 2.34
2117 4187 5.715070 CATTTTATTCCAAACGGGTAAGCA 58.285 37.500 0.00 0.00 38.11 3.91
2119 4189 4.974368 TTATTCCAAACGGGTAAGCATG 57.026 40.909 0.00 0.00 38.11 4.06
2120 4190 2.570415 TTCCAAACGGGTAAGCATGA 57.430 45.000 0.00 0.00 38.11 3.07
2121 4191 2.799126 TCCAAACGGGTAAGCATGAT 57.201 45.000 0.00 0.00 38.11 2.45
2122 4192 3.916359 TCCAAACGGGTAAGCATGATA 57.084 42.857 0.00 0.00 38.11 2.15
2123 4193 4.223556 TCCAAACGGGTAAGCATGATAA 57.776 40.909 0.00 0.00 38.11 1.75
2124 4194 3.942748 TCCAAACGGGTAAGCATGATAAC 59.057 43.478 0.00 0.00 38.11 1.89
2125 4195 3.945285 CCAAACGGGTAAGCATGATAACT 59.055 43.478 0.00 0.00 0.00 2.24
2126 4196 4.201910 CCAAACGGGTAAGCATGATAACTG 60.202 45.833 0.00 0.00 0.00 3.16
2127 4197 4.481368 AACGGGTAAGCATGATAACTGA 57.519 40.909 9.17 0.00 0.00 3.41
2128 4198 4.060038 ACGGGTAAGCATGATAACTGAG 57.940 45.455 9.17 0.00 0.00 3.35
2130 4200 3.493350 CGGGTAAGCATGATAACTGAGCT 60.493 47.826 0.00 0.00 37.08 4.09
2131 4201 3.812053 GGGTAAGCATGATAACTGAGCTG 59.188 47.826 0.00 0.00 35.42 4.24
2132 4202 4.443457 GGGTAAGCATGATAACTGAGCTGA 60.443 45.833 0.00 0.00 35.42 4.26
2133 4203 4.749099 GGTAAGCATGATAACTGAGCTGAG 59.251 45.833 0.00 0.00 35.42 3.35
2134 4204 4.484537 AAGCATGATAACTGAGCTGAGT 57.515 40.909 0.00 0.00 35.42 3.41
2135 4205 3.794717 AGCATGATAACTGAGCTGAGTG 58.205 45.455 6.60 0.00 33.67 3.51
2150 4220 5.415415 GCTGAGTGCTTTTACCTGATATG 57.585 43.478 0.00 0.00 38.95 1.78
2151 4221 5.118990 GCTGAGTGCTTTTACCTGATATGA 58.881 41.667 0.00 0.00 38.95 2.15
2152 4222 5.007136 GCTGAGTGCTTTTACCTGATATGAC 59.993 44.000 0.00 0.00 38.95 3.06
2154 4224 6.108687 TGAGTGCTTTTACCTGATATGACTG 58.891 40.000 0.00 0.00 0.00 3.51
2155 4225 5.431765 AGTGCTTTTACCTGATATGACTGG 58.568 41.667 0.00 0.00 35.48 4.00
2157 4227 5.525378 GTGCTTTTACCTGATATGACTGGAG 59.475 44.000 0.00 0.00 33.93 3.86
2158 4228 5.425217 TGCTTTTACCTGATATGACTGGAGA 59.575 40.000 0.00 0.00 33.93 3.71
2161 4231 7.500559 GCTTTTACCTGATATGACTGGAGATTT 59.499 37.037 0.00 0.00 33.93 2.17
2163 4233 9.753674 TTTTACCTGATATGACTGGAGATTTTT 57.246 29.630 0.00 0.00 33.93 1.94
2164 4234 8.737168 TTACCTGATATGACTGGAGATTTTTG 57.263 34.615 0.00 0.00 33.93 2.44
2165 4235 6.725364 ACCTGATATGACTGGAGATTTTTGT 58.275 36.000 0.00 0.00 33.93 2.83
2166 4236 7.177878 ACCTGATATGACTGGAGATTTTTGTT 58.822 34.615 0.00 0.00 33.93 2.83
2167 4237 7.671398 ACCTGATATGACTGGAGATTTTTGTTT 59.329 33.333 0.00 0.00 33.93 2.83
2168 4238 7.972277 CCTGATATGACTGGAGATTTTTGTTTG 59.028 37.037 0.00 0.00 0.00 2.93
2169 4239 8.408043 TGATATGACTGGAGATTTTTGTTTGT 57.592 30.769 0.00 0.00 0.00 2.83
2170 4240 8.859090 TGATATGACTGGAGATTTTTGTTTGTT 58.141 29.630 0.00 0.00 0.00 2.83
2171 4241 9.346725 GATATGACTGGAGATTTTTGTTTGTTC 57.653 33.333 0.00 0.00 0.00 3.18
2172 4242 6.522625 TGACTGGAGATTTTTGTTTGTTCA 57.477 33.333 0.00 0.00 0.00 3.18
2173 4243 6.563422 TGACTGGAGATTTTTGTTTGTTCAG 58.437 36.000 0.00 0.00 0.00 3.02
2174 4244 6.376864 TGACTGGAGATTTTTGTTTGTTCAGA 59.623 34.615 0.00 0.00 0.00 3.27
2175 4245 6.564328 ACTGGAGATTTTTGTTTGTTCAGAC 58.436 36.000 0.00 0.00 0.00 3.51
2176 4246 6.152661 ACTGGAGATTTTTGTTTGTTCAGACA 59.847 34.615 0.00 0.00 0.00 3.41
2177 4247 6.329496 TGGAGATTTTTGTTTGTTCAGACAC 58.671 36.000 0.00 0.00 34.98 3.67
2178 4248 5.748630 GGAGATTTTTGTTTGTTCAGACACC 59.251 40.000 0.00 0.00 34.98 4.16
2179 4249 6.279513 AGATTTTTGTTTGTTCAGACACCA 57.720 33.333 0.00 0.00 34.98 4.17
2180 4250 6.332630 AGATTTTTGTTTGTTCAGACACCAG 58.667 36.000 0.00 0.00 34.98 4.00
2181 4251 5.461032 TTTTTGTTTGTTCAGACACCAGT 57.539 34.783 0.00 0.00 34.98 4.00
2182 4252 4.695217 TTTGTTTGTTCAGACACCAGTC 57.305 40.909 0.00 0.00 45.31 3.51
2183 4253 2.639065 TGTTTGTTCAGACACCAGTCC 58.361 47.619 0.00 0.00 46.15 3.85
2184 4254 1.947456 GTTTGTTCAGACACCAGTCCC 59.053 52.381 0.00 0.00 46.15 4.46
2185 4255 1.208706 TTGTTCAGACACCAGTCCCA 58.791 50.000 0.00 0.00 46.15 4.37
2186 4256 1.208706 TGTTCAGACACCAGTCCCAA 58.791 50.000 0.00 0.00 46.15 4.12
2187 4257 1.140852 TGTTCAGACACCAGTCCCAAG 59.859 52.381 0.00 0.00 46.15 3.61
2188 4258 1.416401 GTTCAGACACCAGTCCCAAGA 59.584 52.381 0.00 0.00 46.15 3.02
2189 4259 1.801242 TCAGACACCAGTCCCAAGAA 58.199 50.000 0.00 0.00 46.15 2.52
2190 4260 2.123589 TCAGACACCAGTCCCAAGAAA 58.876 47.619 0.00 0.00 46.15 2.52
2191 4261 2.104792 TCAGACACCAGTCCCAAGAAAG 59.895 50.000 0.00 0.00 46.15 2.62
2192 4262 2.127708 AGACACCAGTCCCAAGAAAGT 58.872 47.619 0.00 0.00 46.15 2.66
2193 4263 2.104963 AGACACCAGTCCCAAGAAAGTC 59.895 50.000 0.00 0.00 46.15 3.01
2194 4264 1.843851 ACACCAGTCCCAAGAAAGTCA 59.156 47.619 0.00 0.00 0.00 3.41
2195 4265 2.443255 ACACCAGTCCCAAGAAAGTCAT 59.557 45.455 0.00 0.00 0.00 3.06
2196 4266 3.650942 ACACCAGTCCCAAGAAAGTCATA 59.349 43.478 0.00 0.00 0.00 2.15
2197 4267 4.289672 ACACCAGTCCCAAGAAAGTCATAT 59.710 41.667 0.00 0.00 0.00 1.78
2198 4268 4.637534 CACCAGTCCCAAGAAAGTCATATG 59.362 45.833 0.00 0.00 0.00 1.78
2199 4269 4.536090 ACCAGTCCCAAGAAAGTCATATGA 59.464 41.667 0.00 0.00 0.00 2.15
2200 4270 5.192522 ACCAGTCCCAAGAAAGTCATATGAT 59.807 40.000 9.02 0.00 0.00 2.45
2201 4271 5.530171 CCAGTCCCAAGAAAGTCATATGATG 59.470 44.000 9.02 1.70 0.00 3.07
2202 4272 6.351711 CAGTCCCAAGAAAGTCATATGATGA 58.648 40.000 9.02 0.00 36.84 2.92
2203 4273 6.482641 CAGTCCCAAGAAAGTCATATGATGAG 59.517 42.308 9.02 0.00 40.53 2.90
2204 4274 5.238214 GTCCCAAGAAAGTCATATGATGAGC 59.762 44.000 9.02 0.00 40.53 4.26
2205 4275 4.212847 CCCAAGAAAGTCATATGATGAGCG 59.787 45.833 9.02 0.00 40.53 5.03
2206 4276 5.052481 CCAAGAAAGTCATATGATGAGCGA 58.948 41.667 9.02 0.00 40.53 4.93
2207 4277 5.699915 CCAAGAAAGTCATATGATGAGCGAT 59.300 40.000 9.02 0.00 40.53 4.58
2208 4278 6.204301 CCAAGAAAGTCATATGATGAGCGATT 59.796 38.462 9.02 0.00 40.53 3.34
2209 4279 7.386025 CCAAGAAAGTCATATGATGAGCGATTA 59.614 37.037 9.02 0.00 40.53 1.75
2210 4280 8.933807 CAAGAAAGTCATATGATGAGCGATTAT 58.066 33.333 9.02 0.00 40.53 1.28
2211 4281 9.499479 AAGAAAGTCATATGATGAGCGATTATT 57.501 29.630 9.02 0.00 40.53 1.40
2212 4282 9.149225 AGAAAGTCATATGATGAGCGATTATTC 57.851 33.333 9.02 2.75 40.53 1.75
2213 4283 8.837788 AAAGTCATATGATGAGCGATTATTCA 57.162 30.769 9.02 0.00 40.53 2.57
2214 4284 8.476657 AAGTCATATGATGAGCGATTATTCAG 57.523 34.615 9.02 0.00 40.53 3.02
2215 4285 7.609960 AGTCATATGATGAGCGATTATTCAGT 58.390 34.615 9.02 0.00 40.53 3.41
2216 4286 8.093307 AGTCATATGATGAGCGATTATTCAGTT 58.907 33.333 9.02 0.00 40.53 3.16
2217 4287 8.715998 GTCATATGATGAGCGATTATTCAGTTT 58.284 33.333 9.02 0.00 40.53 2.66
2218 4288 8.929746 TCATATGATGAGCGATTATTCAGTTTC 58.070 33.333 0.00 0.00 33.59 2.78
2219 4289 8.933807 CATATGATGAGCGATTATTCAGTTTCT 58.066 33.333 0.00 0.00 0.00 2.52
2220 4290 7.798596 ATGATGAGCGATTATTCAGTTTCTT 57.201 32.000 0.00 0.00 0.00 2.52
2221 4291 8.893219 ATGATGAGCGATTATTCAGTTTCTTA 57.107 30.769 0.00 0.00 0.00 2.10
2222 4292 8.893219 TGATGAGCGATTATTCAGTTTCTTAT 57.107 30.769 0.00 0.00 0.00 1.73
2223 4293 9.981114 TGATGAGCGATTATTCAGTTTCTTATA 57.019 29.630 0.00 0.00 0.00 0.98
2255 4325 6.115448 ACGATAGGAAATGGAATAAGAGGG 57.885 41.667 0.00 0.00 43.77 4.30
2256 4326 5.013183 ACGATAGGAAATGGAATAAGAGGGG 59.987 44.000 0.00 0.00 43.77 4.79
2257 4327 5.248477 CGATAGGAAATGGAATAAGAGGGGA 59.752 44.000 0.00 0.00 0.00 4.81
2258 4328 6.239887 CGATAGGAAATGGAATAAGAGGGGAA 60.240 42.308 0.00 0.00 0.00 3.97
2259 4329 5.394562 AGGAAATGGAATAAGAGGGGAAG 57.605 43.478 0.00 0.00 0.00 3.46
2260 4330 5.046522 AGGAAATGGAATAAGAGGGGAAGA 58.953 41.667 0.00 0.00 0.00 2.87
2261 4331 5.103898 AGGAAATGGAATAAGAGGGGAAGAC 60.104 44.000 0.00 0.00 0.00 3.01
2262 4332 5.340027 GGAAATGGAATAAGAGGGGAAGACA 60.340 44.000 0.00 0.00 0.00 3.41
2263 4333 4.779993 ATGGAATAAGAGGGGAAGACAC 57.220 45.455 0.00 0.00 0.00 3.67
2264 4334 3.526899 TGGAATAAGAGGGGAAGACACA 58.473 45.455 0.00 0.00 0.00 3.72
2265 4335 3.913799 TGGAATAAGAGGGGAAGACACAA 59.086 43.478 0.00 0.00 0.00 3.33
2266 4336 4.019321 TGGAATAAGAGGGGAAGACACAAG 60.019 45.833 0.00 0.00 0.00 3.16
2267 4337 4.019231 GGAATAAGAGGGGAAGACACAAGT 60.019 45.833 0.00 0.00 0.00 3.16
2268 4338 2.938956 AAGAGGGGAAGACACAAGTG 57.061 50.000 0.00 0.00 0.00 3.16
2269 4339 0.398318 AGAGGGGAAGACACAAGTGC 59.602 55.000 0.00 0.00 0.00 4.40
2273 4343 1.388547 GGGAAGACACAAGTGCACAA 58.611 50.000 21.04 0.00 0.00 3.33
2275 4345 2.479560 GGGAAGACACAAGTGCACAAAC 60.480 50.000 21.04 4.13 0.00 2.93
2277 4347 2.919666 AGACACAAGTGCACAAACAC 57.080 45.000 21.04 5.77 41.02 3.32
2283 4353 4.081972 ACACAAGTGCACAAACACCAAATA 60.082 37.500 21.04 0.00 41.67 1.40
2286 4356 6.036953 CACAAGTGCACAAACACCAAATAATT 59.963 34.615 21.04 0.00 41.67 1.40
2287 4357 6.257630 ACAAGTGCACAAACACCAAATAATTC 59.742 34.615 21.04 0.00 41.67 2.17
2288 4358 5.911752 AGTGCACAAACACCAAATAATTCA 58.088 33.333 21.04 0.00 41.67 2.57
2294 4364 8.127954 GCACAAACACCAAATAATTCAATTTGT 58.872 29.630 11.09 0.00 42.68 2.83
2311 4381 7.437748 TCAATTTGTTTTATGTGTAAGGTGGG 58.562 34.615 0.00 0.00 0.00 4.61
2313 4383 3.833732 TGTTTTATGTGTAAGGTGGGCA 58.166 40.909 0.00 0.00 0.00 5.36
2317 4387 2.897271 ATGTGTAAGGTGGGCATTCA 57.103 45.000 0.00 0.00 0.00 2.57
2319 4389 1.143889 TGTGTAAGGTGGGCATTCACA 59.856 47.619 6.45 0.00 39.27 3.58
2323 4393 3.900601 TGTAAGGTGGGCATTCACAATTT 59.099 39.130 6.45 1.73 39.27 1.82
2324 4394 3.405823 AAGGTGGGCATTCACAATTTG 57.594 42.857 6.45 0.00 39.27 2.32
2325 4395 2.607499 AGGTGGGCATTCACAATTTGA 58.393 42.857 2.79 0.00 39.27 2.69
2359 4429 7.709947 TGGAATCAATGTATGAAGCAATTCTC 58.290 34.615 0.00 0.00 42.54 2.87
2360 4430 7.144000 GGAATCAATGTATGAAGCAATTCTCC 58.856 38.462 0.00 0.00 42.54 3.71
2362 4432 7.649533 ATCAATGTATGAAGCAATTCTCCAA 57.350 32.000 0.00 0.00 42.54 3.53
2363 4433 7.649533 TCAATGTATGAAGCAATTCTCCAAT 57.350 32.000 0.00 0.00 34.30 3.16
2364 4434 8.070034 TCAATGTATGAAGCAATTCTCCAATT 57.930 30.769 0.00 0.00 34.30 2.32
2366 4436 9.806203 CAATGTATGAAGCAATTCTCCAATTTA 57.194 29.630 0.00 0.00 28.97 1.40
2368 4438 8.347004 TGTATGAAGCAATTCTCCAATTTACA 57.653 30.769 0.00 0.00 28.97 2.41
2369 4439 8.461222 TGTATGAAGCAATTCTCCAATTTACAG 58.539 33.333 0.00 0.00 28.97 2.74
2370 4440 6.899393 TGAAGCAATTCTCCAATTTACAGT 57.101 33.333 0.00 0.00 28.97 3.55
2371 4441 7.994425 TGAAGCAATTCTCCAATTTACAGTA 57.006 32.000 0.00 0.00 28.97 2.74
2372 4442 7.816640 TGAAGCAATTCTCCAATTTACAGTAC 58.183 34.615 0.00 0.00 28.97 2.73
2374 4444 7.944729 AGCAATTCTCCAATTTACAGTACAT 57.055 32.000 0.00 0.00 28.97 2.29
2375 4445 9.461312 AAGCAATTCTCCAATTTACAGTACATA 57.539 29.630 0.00 0.00 28.97 2.29
2376 4446 9.461312 AGCAATTCTCCAATTTACAGTACATAA 57.539 29.630 0.00 0.00 28.97 1.90
2392 4462 9.627123 ACAGTACATAATATTGTATGCCAAAGT 57.373 29.630 0.00 0.00 36.44 2.66
2398 4468 9.677567 CATAATATTGTATGCCAAAGTTGTACC 57.322 33.333 0.00 0.00 36.44 3.34
2399 4469 7.710676 AATATTGTATGCCAAAGTTGTACCA 57.289 32.000 0.00 0.00 36.44 3.25
2400 4470 7.710676 ATATTGTATGCCAAAGTTGTACCAA 57.289 32.000 0.00 0.00 36.44 3.67
2401 4471 5.446143 TTGTATGCCAAAGTTGTACCAAG 57.554 39.130 0.00 0.00 0.00 3.61
2403 4473 4.517453 TGTATGCCAAAGTTGTACCAAGTC 59.483 41.667 0.00 0.00 0.00 3.01
2404 4474 3.006112 TGCCAAAGTTGTACCAAGTCA 57.994 42.857 0.00 0.00 0.00 3.41
2406 4476 2.287608 GCCAAAGTTGTACCAAGTCAGC 60.288 50.000 0.00 0.00 0.00 4.26
2407 4477 2.032030 CCAAAGTTGTACCAAGTCAGCG 60.032 50.000 0.00 0.00 0.00 5.18
2408 4478 2.869801 CAAAGTTGTACCAAGTCAGCGA 59.130 45.455 0.00 0.00 0.00 4.93
2409 4479 2.150397 AGTTGTACCAAGTCAGCGAC 57.850 50.000 0.00 1.15 0.00 5.19
2411 4481 1.525619 GTTGTACCAAGTCAGCGACAC 59.474 52.381 10.52 1.78 34.60 3.67
2412 4482 1.037493 TGTACCAAGTCAGCGACACT 58.963 50.000 10.52 0.00 34.60 3.55
2413 4483 1.411246 TGTACCAAGTCAGCGACACTT 59.589 47.619 10.52 2.45 34.60 3.16
2415 4485 3.257375 TGTACCAAGTCAGCGACACTTAT 59.743 43.478 10.52 0.93 34.60 1.73
2416 4486 3.402628 ACCAAGTCAGCGACACTTATT 57.597 42.857 10.52 0.00 34.60 1.40
2417 4487 3.740115 ACCAAGTCAGCGACACTTATTT 58.260 40.909 10.52 0.00 34.60 1.40
2418 4488 3.746492 ACCAAGTCAGCGACACTTATTTC 59.254 43.478 10.52 0.00 34.60 2.17
2420 4490 4.143030 CCAAGTCAGCGACACTTATTTCAG 60.143 45.833 10.52 0.00 34.60 3.02
2421 4491 3.589988 AGTCAGCGACACTTATTTCAGG 58.410 45.455 10.52 0.00 34.60 3.86
2422 4492 3.258372 AGTCAGCGACACTTATTTCAGGA 59.742 43.478 10.52 0.00 34.60 3.86
2423 4493 3.368236 GTCAGCGACACTTATTTCAGGAC 59.632 47.826 4.20 0.00 32.09 3.85
2425 4495 2.230508 AGCGACACTTATTTCAGGACGA 59.769 45.455 0.00 0.00 0.00 4.20
2426 4496 2.991190 GCGACACTTATTTCAGGACGAA 59.009 45.455 0.00 0.00 0.00 3.85
2427 4497 3.060895 GCGACACTTATTTCAGGACGAAG 59.939 47.826 0.00 0.00 34.32 3.79
2429 4499 3.933332 GACACTTATTTCAGGACGAAGGG 59.067 47.826 0.00 0.00 34.32 3.95
2431 4501 4.184629 CACTTATTTCAGGACGAAGGGAG 58.815 47.826 0.00 0.00 34.32 4.30
2433 4503 5.021458 ACTTATTTCAGGACGAAGGGAGTA 58.979 41.667 0.00 0.00 34.32 2.59
2434 4504 5.127356 ACTTATTTCAGGACGAAGGGAGTAG 59.873 44.000 0.00 0.00 34.32 2.57
2436 4506 2.893215 TCAGGACGAAGGGAGTAGAA 57.107 50.000 0.00 0.00 0.00 2.10
2437 4507 3.165087 TCAGGACGAAGGGAGTAGAAA 57.835 47.619 0.00 0.00 0.00 2.52
2438 4508 3.709587 TCAGGACGAAGGGAGTAGAAAT 58.290 45.455 0.00 0.00 0.00 2.17
2439 4509 4.094476 TCAGGACGAAGGGAGTAGAAATT 58.906 43.478 0.00 0.00 0.00 1.82
2440 4510 5.266788 TCAGGACGAAGGGAGTAGAAATTA 58.733 41.667 0.00 0.00 0.00 1.40
2441 4511 5.360144 TCAGGACGAAGGGAGTAGAAATTAG 59.640 44.000 0.00 0.00 0.00 1.73
2442 4512 4.650131 AGGACGAAGGGAGTAGAAATTAGG 59.350 45.833 0.00 0.00 0.00 2.69
2443 4513 4.202233 GGACGAAGGGAGTAGAAATTAGGG 60.202 50.000 0.00 0.00 0.00 3.53
2446 4516 4.202233 CGAAGGGAGTAGAAATTAGGGTCC 60.202 50.000 0.00 0.00 0.00 4.46
2447 4517 4.363546 AGGGAGTAGAAATTAGGGTCCA 57.636 45.455 0.00 0.00 0.00 4.02
2448 4518 4.909284 AGGGAGTAGAAATTAGGGTCCAT 58.091 43.478 0.00 0.00 0.00 3.41
2449 4519 6.051946 AGGGAGTAGAAATTAGGGTCCATA 57.948 41.667 0.00 0.00 0.00 2.74
2450 4520 6.644882 AGGGAGTAGAAATTAGGGTCCATAT 58.355 40.000 0.00 0.00 0.00 1.78
2452 4522 7.017651 AGGGAGTAGAAATTAGGGTCCATATTG 59.982 40.741 0.00 0.00 0.00 1.90
2453 4523 7.017254 GGGAGTAGAAATTAGGGTCCATATTGA 59.983 40.741 0.00 0.00 0.00 2.57
2454 4524 8.097662 GGAGTAGAAATTAGGGTCCATATTGAG 58.902 40.741 0.00 0.00 0.00 3.02
2455 4525 8.798975 AGTAGAAATTAGGGTCCATATTGAGA 57.201 34.615 0.00 0.00 0.00 3.27
2456 4526 9.225682 AGTAGAAATTAGGGTCCATATTGAGAA 57.774 33.333 0.00 0.00 0.00 2.87
2482 4552 8.974060 TTTTTATTTCACTGTGTCTAGAACCT 57.026 30.769 7.79 0.00 0.00 3.50
2483 4553 8.603242 TTTTATTTCACTGTGTCTAGAACCTC 57.397 34.615 7.79 0.00 0.00 3.85
2484 4554 7.540474 TTATTTCACTGTGTCTAGAACCTCT 57.460 36.000 7.79 0.00 0.00 3.69
2486 4556 6.576662 TTTCACTGTGTCTAGAACCTCTAG 57.423 41.667 7.79 4.59 45.99 2.43
2487 4557 5.244189 TCACTGTGTCTAGAACCTCTAGT 57.756 43.478 7.79 0.00 45.11 2.57
2489 4559 6.776744 TCACTGTGTCTAGAACCTCTAGTTA 58.223 40.000 7.79 0.00 45.11 2.24
2490 4560 6.654161 TCACTGTGTCTAGAACCTCTAGTTAC 59.346 42.308 7.79 10.20 45.11 2.50
2491 4561 6.430308 CACTGTGTCTAGAACCTCTAGTTACA 59.570 42.308 9.86 13.13 45.11 2.41
2492 4562 7.079182 CTGTGTCTAGAACCTCTAGTTACAG 57.921 44.000 21.37 21.37 45.11 2.74
2493 4563 6.776744 TGTGTCTAGAACCTCTAGTTACAGA 58.223 40.000 9.86 4.98 45.11 3.41
2494 4564 7.403671 TGTGTCTAGAACCTCTAGTTACAGAT 58.596 38.462 9.86 0.00 45.11 2.90
2495 4565 7.889073 TGTGTCTAGAACCTCTAGTTACAGATT 59.111 37.037 9.86 0.00 45.11 2.40
2496 4566 8.400186 GTGTCTAGAACCTCTAGTTACAGATTC 58.600 40.741 9.86 0.00 45.11 2.52
2497 4567 8.330247 TGTCTAGAACCTCTAGTTACAGATTCT 58.670 37.037 9.86 0.00 45.11 2.40
2502 4572 9.930158 AGAACCTCTAGTTACAGATTCTAGATT 57.070 33.333 0.00 0.00 39.40 2.40
2536 4606 9.736023 AGTTGAGAATTTTTATTTCACTGTGTC 57.264 29.630 7.79 0.00 0.00 3.67
2537 4607 9.736023 GTTGAGAATTTTTATTTCACTGTGTCT 57.264 29.630 7.79 0.00 0.00 3.41
2552 4622 8.777865 TCACTGTGTCTAGAAATTATTTCAGG 57.222 34.615 18.37 10.81 42.10 3.86
2553 4623 8.593679 TCACTGTGTCTAGAAATTATTTCAGGA 58.406 33.333 18.37 12.62 42.10 3.86
2554 4624 8.660373 CACTGTGTCTAGAAATTATTTCAGGAC 58.340 37.037 22.89 22.89 42.10 3.85
2555 4625 7.545965 ACTGTGTCTAGAAATTATTTCAGGACG 59.454 37.037 23.43 17.11 41.62 4.79
2556 4626 7.608153 TGTGTCTAGAAATTATTTCAGGACGA 58.392 34.615 23.43 16.20 41.62 4.20
2557 4627 8.092068 TGTGTCTAGAAATTATTTCAGGACGAA 58.908 33.333 23.43 16.90 41.62 3.85
2558 4628 8.596380 GTGTCTAGAAATTATTTCAGGACGAAG 58.404 37.037 23.43 11.06 41.62 3.79
2559 4629 7.764443 TGTCTAGAAATTATTTCAGGACGAAGG 59.236 37.037 23.43 7.15 41.62 3.46
2560 4630 7.224949 GTCTAGAAATTATTTCAGGACGAAGGG 59.775 40.741 18.37 0.00 42.10 3.95
2561 4631 6.062258 AGAAATTATTTCAGGACGAAGGGA 57.938 37.500 18.37 0.00 42.10 4.20
2562 4632 6.116126 AGAAATTATTTCAGGACGAAGGGAG 58.884 40.000 18.37 0.00 42.10 4.30
2563 4633 5.437191 AATTATTTCAGGACGAAGGGAGT 57.563 39.130 0.00 0.00 34.32 3.85
2564 4634 6.555463 AATTATTTCAGGACGAAGGGAGTA 57.445 37.500 0.00 0.00 34.32 2.59
2565 4635 5.593679 TTATTTCAGGACGAAGGGAGTAG 57.406 43.478 0.00 0.00 34.32 2.57
2566 4636 2.893215 TTCAGGACGAAGGGAGTAGA 57.107 50.000 0.00 0.00 0.00 2.59
2567 4637 2.893215 TCAGGACGAAGGGAGTAGAA 57.107 50.000 0.00 0.00 0.00 2.10
2568 4638 3.165087 TCAGGACGAAGGGAGTAGAAA 57.835 47.619 0.00 0.00 0.00 2.52
2569 4639 3.709587 TCAGGACGAAGGGAGTAGAAAT 58.290 45.455 0.00 0.00 0.00 2.17
2570 4640 4.094476 TCAGGACGAAGGGAGTAGAAATT 58.906 43.478 0.00 0.00 0.00 1.82
2571 4641 5.266788 TCAGGACGAAGGGAGTAGAAATTA 58.733 41.667 0.00 0.00 0.00 1.40
2572 4642 5.718130 TCAGGACGAAGGGAGTAGAAATTAA 59.282 40.000 0.00 0.00 0.00 1.40
2573 4643 6.383147 TCAGGACGAAGGGAGTAGAAATTAAT 59.617 38.462 0.00 0.00 0.00 1.40
2574 4644 7.048512 CAGGACGAAGGGAGTAGAAATTAATT 58.951 38.462 0.00 0.00 0.00 1.40
2575 4645 7.553044 CAGGACGAAGGGAGTAGAAATTAATTT 59.447 37.037 13.24 13.24 0.00 1.82
2576 4646 8.107729 AGGACGAAGGGAGTAGAAATTAATTTT 58.892 33.333 14.45 7.61 0.00 1.82
2577 4647 8.737175 GGACGAAGGGAGTAGAAATTAATTTTT 58.263 33.333 14.45 11.46 0.00 1.94
2619 4689 5.761205 AGTTGTAGCTTAGATCAGAGAGGA 58.239 41.667 0.00 0.00 0.00 3.71
2622 4692 5.510430 TGTAGCTTAGATCAGAGAGGAACA 58.490 41.667 0.00 0.00 0.00 3.18
2632 4702 3.071457 TCAGAGAGGAACACATGCTTTGA 59.929 43.478 0.00 0.00 0.00 2.69
2693 4763 1.748122 CTGCTTCATGCTCGGCCTT 60.748 57.895 0.00 0.00 43.37 4.35
2745 4816 5.291858 CAGCCAGTTTTGTTTCTTCCTTTTC 59.708 40.000 0.00 0.00 0.00 2.29
2760 4831 6.993902 TCTTCCTTTTCCGCTTCTAGTTTTTA 59.006 34.615 0.00 0.00 0.00 1.52
2772 4843 6.700081 GCTTCTAGTTTTTACCCTGTTTTTGG 59.300 38.462 0.00 0.00 0.00 3.28
2775 4846 5.366482 AGTTTTTACCCTGTTTTTGGCAT 57.634 34.783 0.00 0.00 0.00 4.40
2788 4859 7.396540 TGTTTTTGGCATTATGTTTGGTTTT 57.603 28.000 0.00 0.00 0.00 2.43
2790 4861 7.970614 TGTTTTTGGCATTATGTTTGGTTTTTC 59.029 29.630 0.00 0.00 0.00 2.29
2791 4862 6.625873 TTTGGCATTATGTTTGGTTTTTCC 57.374 33.333 0.00 0.00 0.00 3.13
2794 4865 5.762218 TGGCATTATGTTTGGTTTTTCCTTG 59.238 36.000 0.00 0.00 37.07 3.61
2798 4869 3.971245 TGTTTGGTTTTTCCTTGCTGT 57.029 38.095 0.00 0.00 37.07 4.40
2808 4879 6.330278 GTTTTTCCTTGCTGTAAGACTTGTT 58.670 36.000 7.09 0.00 38.76 2.83
2824 4895 8.976986 AAGACTTGTTGATAATTTTGATGCTC 57.023 30.769 0.00 0.00 0.00 4.26
2826 4897 8.457261 AGACTTGTTGATAATTTTGATGCTCTC 58.543 33.333 0.00 0.00 0.00 3.20
2830 4901 8.571461 TGTTGATAATTTTGATGCTCTCTTCT 57.429 30.769 0.00 0.00 0.00 2.85
2855 5210 3.316283 ACAAATAGCACACATTTTGGCG 58.684 40.909 0.00 0.00 34.23 5.69
2868 5223 2.902423 TTTGGCGTGTGCTTGGGACT 62.902 55.000 0.00 0.00 42.25 3.85
2875 5230 2.356382 CGTGTGCTTGGGACTTGTTTTA 59.644 45.455 0.00 0.00 0.00 1.52
2880 5235 4.278419 GTGCTTGGGACTTGTTTTAGTCAT 59.722 41.667 6.17 0.00 45.07 3.06
2889 5244 9.498176 GGGACTTGTTTTAGTCATTAGAAGTTA 57.502 33.333 6.17 0.00 45.07 2.24
2915 5270 6.423905 TGATAGTTACTTGTCAAACTGTCTGC 59.576 38.462 11.59 0.00 41.64 4.26
2919 5274 1.605710 CTTGTCAAACTGTCTGCTGGG 59.394 52.381 0.00 0.00 0.00 4.45
2920 5275 0.546122 TGTCAAACTGTCTGCTGGGT 59.454 50.000 0.00 0.00 0.00 4.51
2942 5297 1.142870 AGCAGCCAACCTTGTTCTGTA 59.857 47.619 0.00 0.00 32.77 2.74
2943 5298 1.953686 GCAGCCAACCTTGTTCTGTAA 59.046 47.619 0.00 0.00 32.77 2.41
2944 5299 2.030805 GCAGCCAACCTTGTTCTGTAAG 60.031 50.000 0.00 0.00 32.77 2.34
2945 5300 3.476552 CAGCCAACCTTGTTCTGTAAGA 58.523 45.455 0.00 0.00 44.68 2.10
2976 5331 8.250332 TCAATAACAATAATTTTGTCCTCTGCC 58.750 33.333 6.51 0.00 0.00 4.85
2982 5337 1.981256 TTTTGTCCTCTGCCCTGTTC 58.019 50.000 0.00 0.00 0.00 3.18
2997 5352 5.307196 TGCCCTGTTCTACTCTTTCTACTTT 59.693 40.000 0.00 0.00 0.00 2.66
2999 5354 6.741801 GCCCTGTTCTACTCTTTCTACTTTGT 60.742 42.308 0.00 0.00 0.00 2.83
3046 5401 6.870971 TGGGTGTAAAAGTTGATTACTCAC 57.129 37.500 0.00 0.00 35.54 3.51
3117 5472 8.956533 AAAACTTGCACCATTTGTAACTAAAT 57.043 26.923 0.00 0.00 0.00 1.40
3124 5479 6.523201 GCACCATTTGTAACTAAATTGACGAG 59.477 38.462 0.00 0.00 0.00 4.18
3151 5507 8.823220 AAATAATCTTAATTACCACAGCCTGT 57.177 30.769 0.00 0.00 30.27 4.00
3181 5539 4.100189 CCACAGAGGGAAGTTACTGATAGG 59.900 50.000 0.00 0.00 34.88 2.57
3211 5569 4.452455 AGACTACTTGTTGCATGTGCTAAC 59.548 41.667 6.55 9.29 42.66 2.34
3217 5575 5.530915 ACTTGTTGCATGTGCTAACTCTTTA 59.469 36.000 6.55 0.00 42.66 1.85
3224 5582 8.335532 TGCATGTGCTAACTCTTTATTTTACT 57.664 30.769 6.55 0.00 42.66 2.24
3254 5612 4.278419 GCCATCACTTACTGAACCTTTTGT 59.722 41.667 0.00 0.00 30.60 2.83
3261 5619 9.444600 TCACTTACTGAACCTTTTGTATATTCC 57.555 33.333 0.00 0.00 0.00 3.01
3271 5629 4.875544 TTTGTATATTCCGCAGACAAGC 57.124 40.909 0.00 0.00 32.05 4.01
3416 5774 3.133721 GTGAAGCACTACTCCCTGATCAT 59.866 47.826 0.00 0.00 0.00 2.45
3525 5886 3.967987 GGGTGTGGAGGATAATAGTCAGT 59.032 47.826 0.00 0.00 0.00 3.41
3527 5888 5.453480 GGGTGTGGAGGATAATAGTCAGTTC 60.453 48.000 0.00 0.00 0.00 3.01
3532 5893 4.583489 GGAGGATAATAGTCAGTTCGGACA 59.417 45.833 0.00 0.00 40.29 4.02
3537 5898 6.202954 GGATAATAGTCAGTTCGGACAAATGG 59.797 42.308 0.00 0.00 40.29 3.16
3538 5899 1.523758 AGTCAGTTCGGACAAATGGC 58.476 50.000 0.00 0.00 40.29 4.40
3539 5900 0.165944 GTCAGTTCGGACAAATGGCG 59.834 55.000 0.00 0.00 37.73 5.69
3540 5901 1.154225 CAGTTCGGACAAATGGCGC 60.154 57.895 0.00 0.00 0.00 6.53
3541 5902 2.178273 GTTCGGACAAATGGCGCC 59.822 61.111 22.73 22.73 0.00 6.53
3579 5940 0.468226 TTGTCCCCCAGATGTATCGC 59.532 55.000 0.00 0.00 0.00 4.58
3580 5941 0.689412 TGTCCCCCAGATGTATCGCA 60.689 55.000 0.00 0.00 0.00 5.10
3582 5943 0.105709 TCCCCCAGATGTATCGCAGA 60.106 55.000 0.00 0.00 45.75 4.26
3779 6140 0.618458 TTGACCCCTAAGCAAGCGAT 59.382 50.000 0.00 0.00 0.00 4.58
3788 6149 4.503991 CCCTAAGCAAGCGATCCTTATCTT 60.504 45.833 0.00 11.54 33.18 2.40
3851 6213 3.255634 ACTCTAACACTACACCCCACT 57.744 47.619 0.00 0.00 0.00 4.00
3909 6271 5.046878 ACCAACTTATAACCATGACTCGACA 60.047 40.000 0.00 0.00 0.00 4.35
3913 6275 6.100004 ACTTATAACCATGACTCGACACAAG 58.900 40.000 0.00 0.00 0.00 3.16
3935 6297 6.367686 AGACAAACCTAACACCTAAAAACG 57.632 37.500 0.00 0.00 0.00 3.60
3938 6300 6.114767 ACAAACCTAACACCTAAAAACGAGA 58.885 36.000 0.00 0.00 0.00 4.04
3945 6307 8.996271 CCTAACACCTAAAAACGAGACTTTTAT 58.004 33.333 0.00 0.00 30.10 1.40
3972 6334 8.160521 TCTCGGTTTGTTTTATCATTCTCAAA 57.839 30.769 0.00 0.00 0.00 2.69
3975 6337 8.410141 TCGGTTTGTTTTATCATTCTCAAACTT 58.590 29.630 14.87 0.00 42.00 2.66
4058 6427 2.971997 CGTGCACGTGTATAGCCAT 58.028 52.632 30.50 0.00 34.11 4.40
4093 6462 0.178990 ACCACCTGGACAAAAGGAGC 60.179 55.000 0.00 0.00 38.27 4.70
4141 6510 0.319728 GCAAGAGTGACCAGCAGAGA 59.680 55.000 0.00 0.00 0.00 3.10
4222 6591 1.927527 ACCATGCCTTCTCCCTGCT 60.928 57.895 0.00 0.00 0.00 4.24
4251 6620 2.904866 GGTTTGCACCGCACAGGA 60.905 61.111 0.00 0.00 45.00 3.86
4273 6642 2.244117 GAGTGGAGGGCTTGCGATGA 62.244 60.000 0.00 0.00 0.00 2.92
4317 6687 3.736100 CAACTGCCGATGCCGCAA 61.736 61.111 0.00 0.00 36.33 4.85
4409 6779 3.352447 CGACACAGCGGATGAGATT 57.648 52.632 0.00 0.00 0.00 2.40
4527 6897 0.828022 CCTATAACCTCACCGCCACA 59.172 55.000 0.00 0.00 0.00 4.17
4560 6930 3.492137 GGGTAGCGATACAAGACGGAAAT 60.492 47.826 13.56 0.00 0.00 2.17
4618 6988 3.770040 CTCCCGCCGATGTGGTCA 61.770 66.667 0.00 0.00 40.77 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
421 424 0.916358 CCTCCACCCTTCCCATCTGT 60.916 60.000 0.00 0.00 0.00 3.41
422 425 1.639635 CCCTCCACCCTTCCCATCTG 61.640 65.000 0.00 0.00 0.00 2.90
501 504 2.203470 ACGCCTAGCTAGGGATAGAC 57.797 55.000 35.44 19.52 43.82 2.59
505 508 1.969208 GGTAAACGCCTAGCTAGGGAT 59.031 52.381 35.44 19.99 43.82 3.85
506 509 1.406903 GGTAAACGCCTAGCTAGGGA 58.593 55.000 35.44 11.72 43.82 4.20
507 510 0.391966 GGGTAAACGCCTAGCTAGGG 59.608 60.000 35.44 27.41 43.82 3.53
508 511 0.031721 CGGGTAAACGCCTAGCTAGG 59.968 60.000 32.12 32.12 46.42 3.02
509 512 3.564455 CGGGTAAACGCCTAGCTAG 57.436 57.895 14.20 14.20 0.00 3.42
518 521 1.367599 TTATTGGCCGCGGGTAAACG 61.368 55.000 29.38 0.00 0.00 3.60
519 522 0.810016 TTTATTGGCCGCGGGTAAAC 59.190 50.000 29.38 9.53 0.00 2.01
520 523 1.473278 CTTTTATTGGCCGCGGGTAAA 59.527 47.619 29.38 6.88 0.00 2.01
521 524 1.096416 CTTTTATTGGCCGCGGGTAA 58.904 50.000 29.38 7.92 0.00 2.85
522 525 0.252479 TCTTTTATTGGCCGCGGGTA 59.748 50.000 29.38 0.00 0.00 3.69
523 526 0.395173 ATCTTTTATTGGCCGCGGGT 60.395 50.000 29.38 0.00 0.00 5.28
524 527 0.744281 AATCTTTTATTGGCCGCGGG 59.256 50.000 29.38 8.95 0.00 6.13
525 528 1.403679 TGAATCTTTTATTGGCCGCGG 59.596 47.619 24.05 24.05 0.00 6.46
526 529 2.842208 TGAATCTTTTATTGGCCGCG 57.158 45.000 0.00 0.00 0.00 6.46
527 530 3.003275 TCGATGAATCTTTTATTGGCCGC 59.997 43.478 0.00 0.00 0.00 6.53
528 531 4.811555 TCGATGAATCTTTTATTGGCCG 57.188 40.909 0.00 0.00 0.00 6.13
529 532 6.016777 ACTCATCGATGAATCTTTTATTGGCC 60.017 38.462 27.09 0.00 36.18 5.36
530 533 6.963796 ACTCATCGATGAATCTTTTATTGGC 58.036 36.000 27.09 0.00 36.18 4.52
549 552 5.019470 TGGCTAATATGATCCTCGACTCAT 58.981 41.667 5.87 5.87 36.19 2.90
576 579 3.065371 GGTATCATCGTCCAAAAGGCTTG 59.935 47.826 0.00 0.00 0.00 4.01
825 828 4.161189 TGGCCTTCATTTGTCTGTGAAAAA 59.839 37.500 3.32 0.00 34.26 1.94
856 860 3.704566 AGCATCTCCGGTCACAATTAGTA 59.295 43.478 0.00 0.00 0.00 1.82
857 861 2.501723 AGCATCTCCGGTCACAATTAGT 59.498 45.455 0.00 0.00 0.00 2.24
858 862 3.126831 GAGCATCTCCGGTCACAATTAG 58.873 50.000 0.00 0.00 33.55 1.73
971 3010 3.585990 GCTGCGTGTGTGCTGGTT 61.586 61.111 0.00 0.00 34.72 3.67
1287 3326 1.752198 CTGGTGGAGGACGAAACCA 59.248 57.895 0.00 0.00 40.36 3.67
1312 3351 1.227674 CAAGGGAGCGGTAGATGGC 60.228 63.158 0.00 0.00 0.00 4.40
1356 3395 1.967066 ACCTGATAGGAGAAGGATGCG 59.033 52.381 1.13 0.00 37.67 4.73
1393 3432 4.670896 AAAGCAGGCACAAGTTAAATGT 57.329 36.364 0.00 0.00 0.00 2.71
1484 3529 9.912634 ACGAAACAAGATCATGACAATAAAAAT 57.087 25.926 4.68 0.00 0.00 1.82
1488 3533 9.820229 GTTAACGAAACAAGATCATGACAATAA 57.180 29.630 4.68 0.00 38.05 1.40
1536 3581 1.850441 CGGTAACTAAGTTCATCGCCG 59.150 52.381 0.00 0.00 0.00 6.46
1636 3701 1.004277 ACATGGTATTTCCGCCACAGT 59.996 47.619 0.00 0.00 37.62 3.55
1637 3702 1.401552 CACATGGTATTTCCGCCACAG 59.598 52.381 0.00 0.00 37.62 3.66
1642 3707 1.063469 CGTTCCACATGGTATTTCCGC 59.937 52.381 0.00 0.00 39.52 5.54
1668 3733 6.754193 TGTTCCAATTTATCTTTTGTGGTCC 58.246 36.000 0.00 0.00 0.00 4.46
1679 3744 6.147656 CAGCTTGGGTTTTGTTCCAATTTATC 59.852 38.462 0.00 0.00 41.57 1.75
1763 3828 7.170965 AGAAACACAGTGATGGACATATCTTT 58.829 34.615 7.81 0.00 0.00 2.52
1765 3830 6.305272 AGAAACACAGTGATGGACATATCT 57.695 37.500 7.81 0.00 0.00 1.98
1766 3831 6.992063 AAGAAACACAGTGATGGACATATC 57.008 37.500 7.81 0.00 0.00 1.63
1767 3832 6.823689 GGTAAGAAACACAGTGATGGACATAT 59.176 38.462 7.81 0.00 0.00 1.78
1768 3833 6.170506 GGTAAGAAACACAGTGATGGACATA 58.829 40.000 7.81 0.00 0.00 2.29
1769 3834 5.003804 GGTAAGAAACACAGTGATGGACAT 58.996 41.667 7.81 0.00 0.00 3.06
1770 3835 4.385825 GGTAAGAAACACAGTGATGGACA 58.614 43.478 7.81 0.00 0.00 4.02
1771 3836 3.751698 GGGTAAGAAACACAGTGATGGAC 59.248 47.826 7.81 0.00 0.00 4.02
1775 3840 4.274950 CGTTTGGGTAAGAAACACAGTGAT 59.725 41.667 7.81 0.00 44.08 3.06
1810 3875 0.309302 TTTCGGTGTCAACAATGCCG 59.691 50.000 4.74 4.74 43.32 5.69
1929 3999 8.853077 AGTTACAGATTCTTCATCATGACAAA 57.147 30.769 0.00 0.00 33.75 2.83
1933 4003 9.194972 ACTCTAGTTACAGATTCTTCATCATGA 57.805 33.333 0.00 0.00 33.75 3.07
1946 4016 9.529823 TTCAGATTTCCTAACTCTAGTTACAGA 57.470 33.333 0.00 0.00 39.31 3.41
1961 4031 8.749354 ACAACAAAAACTAACTTCAGATTTCCT 58.251 29.630 0.00 0.00 0.00 3.36
1973 4043 7.380065 TCCATAATCGCAACAACAAAAACTAAC 59.620 33.333 0.00 0.00 0.00 2.34
1991 4061 9.041354 ACAGATTCTAGATTAGGGTCCATAATC 57.959 37.037 23.11 23.11 39.09 1.75
1994 4064 9.310449 GTTACAGATTCTAGATTAGGGTCCATA 57.690 37.037 0.00 0.00 0.00 2.74
1995 4065 8.013667 AGTTACAGATTCTAGATTAGGGTCCAT 58.986 37.037 0.00 0.00 0.00 3.41
1996 4066 7.363031 AGTTACAGATTCTAGATTAGGGTCCA 58.637 38.462 0.00 0.00 0.00 4.02
1997 4067 7.842887 AGTTACAGATTCTAGATTAGGGTCC 57.157 40.000 0.00 0.00 0.00 4.46
1999 4069 9.802039 CTCTAGTTACAGATTCTAGATTAGGGT 57.198 37.037 0.00 0.00 39.19 4.34
2000 4070 9.238368 CCTCTAGTTACAGATTCTAGATTAGGG 57.762 40.741 0.00 0.00 39.19 3.53
2001 4071 9.802039 ACCTCTAGTTACAGATTCTAGATTAGG 57.198 37.037 0.00 0.00 39.19 2.69
2004 4074 9.930158 AGAACCTCTAGTTACAGATTCTAGATT 57.070 33.333 0.00 0.00 39.40 2.40
2008 4078 9.835389 GTCTAGAACCTCTAGTTACAGATTCTA 57.165 37.037 9.86 0.00 45.11 2.10
2010 4080 8.400186 GTGTCTAGAACCTCTAGTTACAGATTC 58.600 40.741 9.86 0.00 45.11 2.52
2011 4081 7.889073 TGTGTCTAGAACCTCTAGTTACAGATT 59.111 37.037 9.86 0.00 45.11 2.40
2012 4082 7.403671 TGTGTCTAGAACCTCTAGTTACAGAT 58.596 38.462 9.86 0.00 45.11 2.90
2014 4084 7.079182 CTGTGTCTAGAACCTCTAGTTACAG 57.921 44.000 21.37 21.37 45.11 2.74
2015 4085 6.430308 CACTGTGTCTAGAACCTCTAGTTACA 59.570 42.308 9.86 13.13 45.11 2.41
2016 4086 6.654161 TCACTGTGTCTAGAACCTCTAGTTAC 59.346 42.308 7.79 10.20 45.11 2.50
2017 4087 6.776744 TCACTGTGTCTAGAACCTCTAGTTA 58.223 40.000 7.79 0.00 45.11 2.24
2018 4088 5.632118 TCACTGTGTCTAGAACCTCTAGTT 58.368 41.667 7.79 0.00 45.11 2.24
2019 4089 5.244189 TCACTGTGTCTAGAACCTCTAGT 57.756 43.478 7.79 0.00 45.11 2.57
2020 4090 6.576662 TTTCACTGTGTCTAGAACCTCTAG 57.423 41.667 7.79 4.59 45.99 2.43
2026 4096 9.865484 GTCTTTTTATTTCACTGTGTCTAGAAC 57.135 33.333 7.79 0.00 0.00 3.01
2083 4153 9.834628 CGTTTGGAATAAAATGCTAGTCTTTTA 57.165 29.630 11.52 11.52 32.93 1.52
2086 4156 6.127730 CCCGTTTGGAATAAAATGCTAGTCTT 60.128 38.462 0.00 0.00 37.49 3.01
2088 4158 5.124936 ACCCGTTTGGAATAAAATGCTAGTC 59.875 40.000 0.00 0.00 37.49 2.59
2089 4159 5.014202 ACCCGTTTGGAATAAAATGCTAGT 58.986 37.500 0.00 0.00 37.49 2.57
2090 4160 5.576447 ACCCGTTTGGAATAAAATGCTAG 57.424 39.130 0.00 0.00 37.49 3.42
2092 4162 5.623596 GCTTACCCGTTTGGAATAAAATGCT 60.624 40.000 0.00 0.00 37.49 3.79
2093 4163 4.565166 GCTTACCCGTTTGGAATAAAATGC 59.435 41.667 0.00 0.00 37.49 3.56
2094 4164 5.715070 TGCTTACCCGTTTGGAATAAAATG 58.285 37.500 0.00 0.00 37.49 2.32
2095 4165 5.986501 TGCTTACCCGTTTGGAATAAAAT 57.013 34.783 0.00 0.00 37.49 1.82
2099 4169 4.223556 TCATGCTTACCCGTTTGGAATA 57.776 40.909 0.00 0.00 37.49 1.75
2101 4171 2.570415 TCATGCTTACCCGTTTGGAA 57.430 45.000 0.00 0.00 37.49 3.53
2103 4173 3.945285 AGTTATCATGCTTACCCGTTTGG 59.055 43.478 0.00 0.00 41.37 3.28
2104 4174 4.634004 TCAGTTATCATGCTTACCCGTTTG 59.366 41.667 0.00 0.00 0.00 2.93
2105 4175 4.839121 TCAGTTATCATGCTTACCCGTTT 58.161 39.130 0.00 0.00 0.00 3.60
2107 4177 3.741388 GCTCAGTTATCATGCTTACCCGT 60.741 47.826 0.00 0.00 0.00 5.28
2108 4178 2.802816 GCTCAGTTATCATGCTTACCCG 59.197 50.000 0.00 0.00 0.00 5.28
2109 4179 3.812053 CAGCTCAGTTATCATGCTTACCC 59.188 47.826 0.00 0.00 0.00 3.69
2110 4180 4.697514 TCAGCTCAGTTATCATGCTTACC 58.302 43.478 0.00 0.00 0.00 2.85
2111 4181 5.233902 CACTCAGCTCAGTTATCATGCTTAC 59.766 44.000 0.00 0.00 0.00 2.34
2112 4182 5.354767 CACTCAGCTCAGTTATCATGCTTA 58.645 41.667 0.00 0.00 0.00 3.09
2113 4183 4.190001 CACTCAGCTCAGTTATCATGCTT 58.810 43.478 0.00 0.00 0.00 3.91
2114 4184 3.794717 CACTCAGCTCAGTTATCATGCT 58.205 45.455 0.00 0.00 0.00 3.79
2115 4185 2.287373 GCACTCAGCTCAGTTATCATGC 59.713 50.000 0.00 0.00 41.15 4.06
2128 4198 5.007136 GTCATATCAGGTAAAAGCACTCAGC 59.993 44.000 0.00 0.00 46.19 4.26
2130 4200 6.108687 CAGTCATATCAGGTAAAAGCACTCA 58.891 40.000 0.00 0.00 0.00 3.41
2131 4201 5.525378 CCAGTCATATCAGGTAAAAGCACTC 59.475 44.000 0.00 0.00 0.00 3.51
2132 4202 5.189736 TCCAGTCATATCAGGTAAAAGCACT 59.810 40.000 0.00 0.00 0.00 4.40
2133 4203 5.428253 TCCAGTCATATCAGGTAAAAGCAC 58.572 41.667 0.00 0.00 0.00 4.40
2134 4204 5.425217 TCTCCAGTCATATCAGGTAAAAGCA 59.575 40.000 0.00 0.00 0.00 3.91
2135 4205 5.918608 TCTCCAGTCATATCAGGTAAAAGC 58.081 41.667 0.00 0.00 0.00 3.51
2137 4207 9.753674 AAAAATCTCCAGTCATATCAGGTAAAA 57.246 29.630 0.00 0.00 0.00 1.52
2139 4209 8.328758 ACAAAAATCTCCAGTCATATCAGGTAA 58.671 33.333 0.00 0.00 0.00 2.85
2140 4210 7.861629 ACAAAAATCTCCAGTCATATCAGGTA 58.138 34.615 0.00 0.00 0.00 3.08
2142 4212 7.636150 AACAAAAATCTCCAGTCATATCAGG 57.364 36.000 0.00 0.00 0.00 3.86
2143 4213 8.517878 ACAAACAAAAATCTCCAGTCATATCAG 58.482 33.333 0.00 0.00 0.00 2.90
2145 4215 9.346725 GAACAAACAAAAATCTCCAGTCATATC 57.653 33.333 0.00 0.00 0.00 1.63
2146 4216 8.859090 TGAACAAACAAAAATCTCCAGTCATAT 58.141 29.630 0.00 0.00 0.00 1.78
2148 4218 7.068593 TCTGAACAAACAAAAATCTCCAGTCAT 59.931 33.333 0.00 0.00 0.00 3.06
2149 4219 6.376864 TCTGAACAAACAAAAATCTCCAGTCA 59.623 34.615 0.00 0.00 0.00 3.41
2150 4220 6.693113 GTCTGAACAAACAAAAATCTCCAGTC 59.307 38.462 0.00 0.00 0.00 3.51
2151 4221 6.152661 TGTCTGAACAAACAAAAATCTCCAGT 59.847 34.615 0.00 0.00 30.70 4.00
2152 4222 6.473455 GTGTCTGAACAAACAAAAATCTCCAG 59.527 38.462 0.00 0.00 37.08 3.86
2154 4224 5.748630 GGTGTCTGAACAAACAAAAATCTCC 59.251 40.000 0.00 0.00 37.08 3.71
2155 4225 6.329496 TGGTGTCTGAACAAACAAAAATCTC 58.671 36.000 0.00 0.00 37.08 2.75
2157 4227 6.099341 ACTGGTGTCTGAACAAACAAAAATC 58.901 36.000 0.00 0.00 37.08 2.17
2158 4228 6.036577 ACTGGTGTCTGAACAAACAAAAAT 57.963 33.333 0.00 0.00 37.08 1.82
2161 4231 3.442273 GGACTGGTGTCTGAACAAACAAA 59.558 43.478 0.00 0.00 42.54 2.83
2163 4233 2.639065 GGACTGGTGTCTGAACAAACA 58.361 47.619 0.00 0.00 42.54 2.83
2164 4234 1.947456 GGGACTGGTGTCTGAACAAAC 59.053 52.381 0.00 0.00 42.54 2.93
2165 4235 1.562008 TGGGACTGGTGTCTGAACAAA 59.438 47.619 0.00 0.00 42.54 2.83
2166 4236 1.208706 TGGGACTGGTGTCTGAACAA 58.791 50.000 0.00 0.00 42.54 2.83
2167 4237 1.140852 CTTGGGACTGGTGTCTGAACA 59.859 52.381 0.00 0.00 42.54 3.18
2168 4238 1.416401 TCTTGGGACTGGTGTCTGAAC 59.584 52.381 0.00 0.00 42.54 3.18
2169 4239 1.801242 TCTTGGGACTGGTGTCTGAA 58.199 50.000 0.00 0.00 42.54 3.02
2170 4240 1.801242 TTCTTGGGACTGGTGTCTGA 58.199 50.000 0.00 0.00 42.54 3.27
2171 4241 2.158755 ACTTTCTTGGGACTGGTGTCTG 60.159 50.000 0.00 0.00 42.54 3.51
2172 4242 2.104963 GACTTTCTTGGGACTGGTGTCT 59.895 50.000 0.00 0.00 42.54 3.41
2173 4243 2.158813 TGACTTTCTTGGGACTGGTGTC 60.159 50.000 0.00 0.00 42.22 3.67
2174 4244 1.843851 TGACTTTCTTGGGACTGGTGT 59.156 47.619 0.00 0.00 0.00 4.16
2175 4245 2.638480 TGACTTTCTTGGGACTGGTG 57.362 50.000 0.00 0.00 0.00 4.17
2176 4246 4.536090 TCATATGACTTTCTTGGGACTGGT 59.464 41.667 0.00 0.00 0.00 4.00
2177 4247 5.102953 TCATATGACTTTCTTGGGACTGG 57.897 43.478 0.00 0.00 0.00 4.00
2178 4248 6.351711 TCATCATATGACTTTCTTGGGACTG 58.648 40.000 7.78 0.00 33.59 3.51
2179 4249 6.566079 TCATCATATGACTTTCTTGGGACT 57.434 37.500 7.78 0.00 33.59 3.85
2180 4250 5.238214 GCTCATCATATGACTTTCTTGGGAC 59.762 44.000 7.78 0.00 35.06 4.46
2181 4251 5.371526 GCTCATCATATGACTTTCTTGGGA 58.628 41.667 7.78 0.00 35.06 4.37
2182 4252 4.212847 CGCTCATCATATGACTTTCTTGGG 59.787 45.833 7.78 2.28 35.06 4.12
2183 4253 5.052481 TCGCTCATCATATGACTTTCTTGG 58.948 41.667 7.78 0.00 35.06 3.61
2184 4254 6.782298 ATCGCTCATCATATGACTTTCTTG 57.218 37.500 7.78 1.29 35.06 3.02
2185 4255 9.499479 AATAATCGCTCATCATATGACTTTCTT 57.501 29.630 7.78 0.00 35.06 2.52
2186 4256 9.149225 GAATAATCGCTCATCATATGACTTTCT 57.851 33.333 7.78 0.00 35.06 2.52
2187 4257 8.929746 TGAATAATCGCTCATCATATGACTTTC 58.070 33.333 7.78 0.00 35.06 2.62
2188 4258 8.837788 TGAATAATCGCTCATCATATGACTTT 57.162 30.769 7.78 0.00 35.06 2.66
2189 4259 8.093307 ACTGAATAATCGCTCATCATATGACTT 58.907 33.333 7.78 0.00 35.06 3.01
2190 4260 7.609960 ACTGAATAATCGCTCATCATATGACT 58.390 34.615 7.78 0.00 35.06 3.41
2191 4261 7.824704 ACTGAATAATCGCTCATCATATGAC 57.175 36.000 7.78 0.00 35.06 3.06
2192 4262 8.837788 AAACTGAATAATCGCTCATCATATGA 57.162 30.769 8.10 8.10 37.76 2.15
2193 4263 8.933807 AGAAACTGAATAATCGCTCATCATATG 58.066 33.333 0.00 0.00 0.00 1.78
2194 4264 9.499479 AAGAAACTGAATAATCGCTCATCATAT 57.501 29.630 0.00 0.00 0.00 1.78
2195 4265 8.893219 AAGAAACTGAATAATCGCTCATCATA 57.107 30.769 0.00 0.00 0.00 2.15
2196 4266 7.798596 AAGAAACTGAATAATCGCTCATCAT 57.201 32.000 0.00 0.00 0.00 2.45
2197 4267 8.893219 ATAAGAAACTGAATAATCGCTCATCA 57.107 30.769 0.00 0.00 0.00 3.07
2225 4295 9.765795 CTTATTCCATTTCCTATCGTAAAGTCT 57.234 33.333 0.00 0.00 0.00 3.24
2226 4296 9.760077 TCTTATTCCATTTCCTATCGTAAAGTC 57.240 33.333 0.00 0.00 0.00 3.01
2227 4297 9.765795 CTCTTATTCCATTTCCTATCGTAAAGT 57.234 33.333 0.00 0.00 0.00 2.66
2228 4298 9.209175 CCTCTTATTCCATTTCCTATCGTAAAG 57.791 37.037 0.00 0.00 0.00 1.85
2229 4299 8.154856 CCCTCTTATTCCATTTCCTATCGTAAA 58.845 37.037 0.00 0.00 0.00 2.01
2230 4300 7.256547 CCCCTCTTATTCCATTTCCTATCGTAA 60.257 40.741 0.00 0.00 0.00 3.18
2231 4301 6.212791 CCCCTCTTATTCCATTTCCTATCGTA 59.787 42.308 0.00 0.00 0.00 3.43
2232 4302 5.013183 CCCCTCTTATTCCATTTCCTATCGT 59.987 44.000 0.00 0.00 0.00 3.73
2233 4303 5.248477 TCCCCTCTTATTCCATTTCCTATCG 59.752 44.000 0.00 0.00 0.00 2.92
2234 4304 6.704056 TCCCCTCTTATTCCATTTCCTATC 57.296 41.667 0.00 0.00 0.00 2.08
2235 4305 6.857222 TCTTCCCCTCTTATTCCATTTCCTAT 59.143 38.462 0.00 0.00 0.00 2.57
2236 4306 6.101296 GTCTTCCCCTCTTATTCCATTTCCTA 59.899 42.308 0.00 0.00 0.00 2.94
2237 4307 5.046522 TCTTCCCCTCTTATTCCATTTCCT 58.953 41.667 0.00 0.00 0.00 3.36
2238 4308 5.133941 GTCTTCCCCTCTTATTCCATTTCC 58.866 45.833 0.00 0.00 0.00 3.13
2239 4309 5.590663 GTGTCTTCCCCTCTTATTCCATTTC 59.409 44.000 0.00 0.00 0.00 2.17
2240 4310 5.015178 TGTGTCTTCCCCTCTTATTCCATTT 59.985 40.000 0.00 0.00 0.00 2.32
2241 4311 4.540099 TGTGTCTTCCCCTCTTATTCCATT 59.460 41.667 0.00 0.00 0.00 3.16
2242 4312 4.111577 TGTGTCTTCCCCTCTTATTCCAT 58.888 43.478 0.00 0.00 0.00 3.41
2243 4313 3.526899 TGTGTCTTCCCCTCTTATTCCA 58.473 45.455 0.00 0.00 0.00 3.53
2244 4314 4.019231 ACTTGTGTCTTCCCCTCTTATTCC 60.019 45.833 0.00 0.00 0.00 3.01
2245 4315 4.938226 CACTTGTGTCTTCCCCTCTTATTC 59.062 45.833 0.00 0.00 0.00 1.75
2246 4316 4.807643 GCACTTGTGTCTTCCCCTCTTATT 60.808 45.833 2.61 0.00 0.00 1.40
2247 4317 3.307762 GCACTTGTGTCTTCCCCTCTTAT 60.308 47.826 2.61 0.00 0.00 1.73
2248 4318 2.038557 GCACTTGTGTCTTCCCCTCTTA 59.961 50.000 2.61 0.00 0.00 2.10
2249 4319 1.202818 GCACTTGTGTCTTCCCCTCTT 60.203 52.381 2.61 0.00 0.00 2.85
2250 4320 0.398318 GCACTTGTGTCTTCCCCTCT 59.602 55.000 2.61 0.00 0.00 3.69
2251 4321 0.108585 TGCACTTGTGTCTTCCCCTC 59.891 55.000 2.61 0.00 0.00 4.30
2252 4322 0.179018 GTGCACTTGTGTCTTCCCCT 60.179 55.000 10.32 0.00 0.00 4.79
2253 4323 0.465460 TGTGCACTTGTGTCTTCCCC 60.465 55.000 19.41 0.00 0.00 4.81
2254 4324 1.388547 TTGTGCACTTGTGTCTTCCC 58.611 50.000 19.41 0.00 0.00 3.97
2255 4325 2.163412 TGTTTGTGCACTTGTGTCTTCC 59.837 45.455 19.41 0.00 0.00 3.46
2256 4326 3.171277 GTGTTTGTGCACTTGTGTCTTC 58.829 45.455 19.41 0.00 36.51 2.87
2257 4327 2.094752 GGTGTTTGTGCACTTGTGTCTT 60.095 45.455 19.41 0.00 39.21 3.01
2258 4328 1.472480 GGTGTTTGTGCACTTGTGTCT 59.528 47.619 19.41 0.00 39.21 3.41
2259 4329 1.201181 TGGTGTTTGTGCACTTGTGTC 59.799 47.619 19.41 4.74 39.21 3.67
2260 4330 1.252175 TGGTGTTTGTGCACTTGTGT 58.748 45.000 19.41 0.00 39.21 3.72
2261 4331 2.360553 TTGGTGTTTGTGCACTTGTG 57.639 45.000 19.41 0.00 39.21 3.33
2262 4332 3.608316 ATTTGGTGTTTGTGCACTTGT 57.392 38.095 19.41 0.00 39.21 3.16
2263 4333 6.257411 TGAATTATTTGGTGTTTGTGCACTTG 59.743 34.615 19.41 0.00 39.21 3.16
2264 4334 6.344500 TGAATTATTTGGTGTTTGTGCACTT 58.656 32.000 19.41 0.00 39.21 3.16
2265 4335 5.911752 TGAATTATTTGGTGTTTGTGCACT 58.088 33.333 19.41 0.00 39.21 4.40
2266 4336 6.595772 TTGAATTATTTGGTGTTTGTGCAC 57.404 33.333 10.75 10.75 38.56 4.57
2267 4337 7.798596 AATTGAATTATTTGGTGTTTGTGCA 57.201 28.000 0.00 0.00 0.00 4.57
2268 4338 8.127954 ACAAATTGAATTATTTGGTGTTTGTGC 58.872 29.630 15.00 0.00 45.45 4.57
2286 4356 7.437748 CCCACCTTACACATAAAACAAATTGA 58.562 34.615 0.00 0.00 0.00 2.57
2287 4357 6.147000 GCCCACCTTACACATAAAACAAATTG 59.853 38.462 0.00 0.00 0.00 2.32
2288 4358 6.183361 TGCCCACCTTACACATAAAACAAATT 60.183 34.615 0.00 0.00 0.00 1.82
2294 4364 5.047660 GTGAATGCCCACCTTACACATAAAA 60.048 40.000 0.00 0.00 0.00 1.52
2296 4366 4.013728 GTGAATGCCCACCTTACACATAA 58.986 43.478 0.00 0.00 0.00 1.90
2297 4367 3.009584 TGTGAATGCCCACCTTACACATA 59.990 43.478 0.00 0.00 36.26 2.29
2298 4368 2.224992 TGTGAATGCCCACCTTACACAT 60.225 45.455 0.00 0.00 36.26 3.21
2305 4375 2.607499 TCAAATTGTGAATGCCCACCT 58.393 42.857 0.00 0.00 36.26 4.00
2306 4376 3.399440 TTCAAATTGTGAATGCCCACC 57.601 42.857 0.00 0.00 41.47 4.61
2307 4377 7.333921 TCAATATTTCAAATTGTGAATGCCCAC 59.666 33.333 0.00 0.00 45.71 4.61
2308 4378 7.392418 TCAATATTTCAAATTGTGAATGCCCA 58.608 30.769 0.00 0.00 45.71 5.36
2309 4379 7.846644 TCAATATTTCAAATTGTGAATGCCC 57.153 32.000 0.00 0.00 45.71 5.36
2311 4381 9.100554 TCCATCAATATTTCAAATTGTGAATGC 57.899 29.630 0.00 0.00 45.71 3.56
2332 4402 8.358148 AGAATTGCTTCATACATTGATTCCATC 58.642 33.333 0.00 0.00 33.34 3.51
2333 4403 8.246430 AGAATTGCTTCATACATTGATTCCAT 57.754 30.769 0.00 0.00 33.34 3.41
2335 4405 7.144000 GGAGAATTGCTTCATACATTGATTCC 58.856 38.462 0.00 0.00 33.34 3.01
2336 4406 7.709947 TGGAGAATTGCTTCATACATTGATTC 58.290 34.615 0.00 0.00 33.34 2.52
2337 4407 7.649533 TGGAGAATTGCTTCATACATTGATT 57.350 32.000 0.00 0.00 33.34 2.57
2338 4408 7.649533 TTGGAGAATTGCTTCATACATTGAT 57.350 32.000 0.00 0.00 30.38 2.57
2340 4410 8.712285 AAATTGGAGAATTGCTTCATACATTG 57.288 30.769 0.00 0.00 30.38 2.82
2342 4412 8.970020 TGTAAATTGGAGAATTGCTTCATACAT 58.030 29.630 0.00 0.00 30.38 2.29
2343 4413 8.347004 TGTAAATTGGAGAATTGCTTCATACA 57.653 30.769 0.00 0.00 30.38 2.29
2344 4414 8.462016 ACTGTAAATTGGAGAATTGCTTCATAC 58.538 33.333 0.00 0.00 30.38 2.39
2345 4415 8.579850 ACTGTAAATTGGAGAATTGCTTCATA 57.420 30.769 0.00 0.00 30.38 2.15
2346 4416 7.472334 ACTGTAAATTGGAGAATTGCTTCAT 57.528 32.000 0.00 0.00 30.38 2.57
2347 4417 6.899393 ACTGTAAATTGGAGAATTGCTTCA 57.101 33.333 0.00 0.00 31.83 3.02
2348 4418 7.816640 TGTACTGTAAATTGGAGAATTGCTTC 58.183 34.615 0.00 0.00 31.83 3.86
2350 4420 7.944729 ATGTACTGTAAATTGGAGAATTGCT 57.055 32.000 0.00 0.00 31.83 3.91
2366 4436 9.627123 ACTTTGGCATACAATATTATGTACTGT 57.373 29.630 0.00 0.00 38.53 3.55
2372 4442 9.677567 GGTACAACTTTGGCATACAATATTATG 57.322 33.333 0.00 0.00 39.21 1.90
2374 4444 8.809468 TGGTACAACTTTGGCATACAATATTA 57.191 30.769 0.00 0.00 34.91 0.98
2375 4445 7.710676 TGGTACAACTTTGGCATACAATATT 57.289 32.000 0.00 0.00 34.91 1.28
2393 4463 1.037493 AGTGTCGCTGACTTGGTACA 58.963 50.000 9.49 0.00 33.15 2.90
2394 4464 2.150397 AAGTGTCGCTGACTTGGTAC 57.850 50.000 9.49 0.00 32.30 3.34
2396 4466 3.402628 AATAAGTGTCGCTGACTTGGT 57.597 42.857 9.49 0.00 35.30 3.67
2397 4467 3.745975 TGAAATAAGTGTCGCTGACTTGG 59.254 43.478 9.49 0.00 35.30 3.61
2398 4468 4.143030 CCTGAAATAAGTGTCGCTGACTTG 60.143 45.833 9.49 0.00 35.30 3.16
2399 4469 3.997021 CCTGAAATAAGTGTCGCTGACTT 59.003 43.478 9.49 0.00 37.43 3.01
2400 4470 3.258372 TCCTGAAATAAGTGTCGCTGACT 59.742 43.478 9.49 0.00 33.15 3.41
2401 4471 3.368236 GTCCTGAAATAAGTGTCGCTGAC 59.632 47.826 2.32 2.32 0.00 3.51
2403 4473 2.345641 CGTCCTGAAATAAGTGTCGCTG 59.654 50.000 0.00 0.00 0.00 5.18
2404 4474 2.230508 TCGTCCTGAAATAAGTGTCGCT 59.769 45.455 0.00 0.00 0.00 4.93
2406 4476 3.612860 CCTTCGTCCTGAAATAAGTGTCG 59.387 47.826 0.00 0.00 35.79 4.35
2407 4477 3.933332 CCCTTCGTCCTGAAATAAGTGTC 59.067 47.826 0.00 0.00 35.79 3.67
2408 4478 3.581332 TCCCTTCGTCCTGAAATAAGTGT 59.419 43.478 0.00 0.00 35.79 3.55
2409 4479 4.184629 CTCCCTTCGTCCTGAAATAAGTG 58.815 47.826 0.00 0.00 35.79 3.16
2411 4481 4.473477 ACTCCCTTCGTCCTGAAATAAG 57.527 45.455 0.00 0.00 35.79 1.73
2412 4482 5.266788 TCTACTCCCTTCGTCCTGAAATAA 58.733 41.667 0.00 0.00 35.79 1.40
2413 4483 4.863548 TCTACTCCCTTCGTCCTGAAATA 58.136 43.478 0.00 0.00 35.79 1.40
2415 4485 3.165087 TCTACTCCCTTCGTCCTGAAA 57.835 47.619 0.00 0.00 35.79 2.69
2416 4486 2.893215 TCTACTCCCTTCGTCCTGAA 57.107 50.000 0.00 0.00 34.74 3.02
2417 4487 2.893215 TTCTACTCCCTTCGTCCTGA 57.107 50.000 0.00 0.00 0.00 3.86
2418 4488 4.473477 AATTTCTACTCCCTTCGTCCTG 57.527 45.455 0.00 0.00 0.00 3.86
2420 4490 4.202233 CCCTAATTTCTACTCCCTTCGTCC 60.202 50.000 0.00 0.00 0.00 4.79
2421 4491 4.405036 ACCCTAATTTCTACTCCCTTCGTC 59.595 45.833 0.00 0.00 0.00 4.20
2422 4492 4.359996 ACCCTAATTTCTACTCCCTTCGT 58.640 43.478 0.00 0.00 0.00 3.85
2423 4493 4.202233 GGACCCTAATTTCTACTCCCTTCG 60.202 50.000 0.00 0.00 0.00 3.79
2425 4495 4.706616 TGGACCCTAATTTCTACTCCCTT 58.293 43.478 0.00 0.00 0.00 3.95
2426 4496 4.363546 TGGACCCTAATTTCTACTCCCT 57.636 45.455 0.00 0.00 0.00 4.20
2427 4497 6.954352 ATATGGACCCTAATTTCTACTCCC 57.046 41.667 0.00 0.00 0.00 4.30
2429 4499 8.871125 TCTCAATATGGACCCTAATTTCTACTC 58.129 37.037 0.00 0.00 0.00 2.59
2433 4503 9.942526 AAATTCTCAATATGGACCCTAATTTCT 57.057 29.630 0.00 0.00 0.00 2.52
2456 4526 9.574516 AGGTTCTAGACACAGTGAAATAAAAAT 57.425 29.630 7.81 0.00 0.00 1.82
2457 4527 8.974060 AGGTTCTAGACACAGTGAAATAAAAA 57.026 30.769 7.81 0.00 0.00 1.94
2460 4530 7.540474 AGAGGTTCTAGACACAGTGAAATAA 57.460 36.000 7.81 0.00 0.00 1.40
2476 4546 9.930158 AATCTAGAATCTGTAACTAGAGGTTCT 57.070 33.333 12.52 12.52 45.53 3.01
2510 4580 9.736023 GACACAGTGAAATAAAAATTCTCAACT 57.264 29.630 7.81 0.00 0.00 3.16
2511 4581 9.736023 AGACACAGTGAAATAAAAATTCTCAAC 57.264 29.630 7.81 0.00 0.00 3.18
2526 4596 9.219603 CCTGAAATAATTTCTAGACACAGTGAA 57.780 33.333 7.81 0.00 40.32 3.18
2527 4597 8.593679 TCCTGAAATAATTTCTAGACACAGTGA 58.406 33.333 7.81 0.00 40.32 3.41
2528 4598 8.660373 GTCCTGAAATAATTTCTAGACACAGTG 58.340 37.037 0.00 0.00 39.75 3.66
2529 4599 7.545965 CGTCCTGAAATAATTTCTAGACACAGT 59.454 37.037 3.86 0.00 39.85 3.55
2530 4600 7.759886 TCGTCCTGAAATAATTTCTAGACACAG 59.240 37.037 3.86 0.00 39.85 3.66
2531 4601 7.608153 TCGTCCTGAAATAATTTCTAGACACA 58.392 34.615 3.86 0.00 39.85 3.72
2532 4602 8.475331 TTCGTCCTGAAATAATTTCTAGACAC 57.525 34.615 3.86 0.00 39.85 3.67
2533 4603 7.764443 CCTTCGTCCTGAAATAATTTCTAGACA 59.236 37.037 3.86 0.00 39.85 3.41
2534 4604 7.224949 CCCTTCGTCCTGAAATAATTTCTAGAC 59.775 40.741 0.00 0.00 40.32 2.59
2535 4605 7.125204 TCCCTTCGTCCTGAAATAATTTCTAGA 59.875 37.037 0.00 0.00 40.32 2.43
2536 4606 7.272978 TCCCTTCGTCCTGAAATAATTTCTAG 58.727 38.462 0.00 0.00 40.32 2.43
2537 4607 7.093024 ACTCCCTTCGTCCTGAAATAATTTCTA 60.093 37.037 0.00 0.00 40.32 2.10
2538 4608 6.062258 TCCCTTCGTCCTGAAATAATTTCT 57.938 37.500 0.00 0.00 40.32 2.52
2539 4609 5.880887 ACTCCCTTCGTCCTGAAATAATTTC 59.119 40.000 0.00 0.00 40.08 2.17
2540 4610 5.816682 ACTCCCTTCGTCCTGAAATAATTT 58.183 37.500 0.00 0.00 35.79 1.82
2541 4611 5.437191 ACTCCCTTCGTCCTGAAATAATT 57.563 39.130 0.00 0.00 35.79 1.40
2542 4612 5.897824 TCTACTCCCTTCGTCCTGAAATAAT 59.102 40.000 0.00 0.00 35.79 1.28
2543 4613 5.266788 TCTACTCCCTTCGTCCTGAAATAA 58.733 41.667 0.00 0.00 35.79 1.40
2544 4614 4.863548 TCTACTCCCTTCGTCCTGAAATA 58.136 43.478 0.00 0.00 35.79 1.40
2545 4615 3.709587 TCTACTCCCTTCGTCCTGAAAT 58.290 45.455 0.00 0.00 35.79 2.17
2546 4616 3.165087 TCTACTCCCTTCGTCCTGAAA 57.835 47.619 0.00 0.00 35.79 2.69
2547 4617 2.893215 TCTACTCCCTTCGTCCTGAA 57.107 50.000 0.00 0.00 34.74 3.02
2548 4618 2.893215 TTCTACTCCCTTCGTCCTGA 57.107 50.000 0.00 0.00 0.00 3.86
2549 4619 4.473477 AATTTCTACTCCCTTCGTCCTG 57.527 45.455 0.00 0.00 0.00 3.86
2550 4620 6.809976 ATTAATTTCTACTCCCTTCGTCCT 57.190 37.500 0.00 0.00 0.00 3.85
2551 4621 7.860918 AAATTAATTTCTACTCCCTTCGTCC 57.139 36.000 7.64 0.00 0.00 4.79
2571 4641 8.934507 TTTCGTCCAACAGTGAAATAAAAATT 57.065 26.923 0.00 0.00 0.00 1.82
2572 4642 8.194769 ACTTTCGTCCAACAGTGAAATAAAAAT 58.805 29.630 0.00 0.00 30.68 1.82
2573 4643 7.540299 ACTTTCGTCCAACAGTGAAATAAAAA 58.460 30.769 0.00 0.00 30.68 1.94
2574 4644 7.090953 ACTTTCGTCCAACAGTGAAATAAAA 57.909 32.000 0.00 0.00 30.68 1.52
2575 4645 6.687081 ACTTTCGTCCAACAGTGAAATAAA 57.313 33.333 0.00 0.00 30.68 1.40
2576 4646 6.094325 ACAACTTTCGTCCAACAGTGAAATAA 59.906 34.615 0.00 0.00 30.68 1.40
2577 4647 5.587043 ACAACTTTCGTCCAACAGTGAAATA 59.413 36.000 0.00 0.00 30.68 1.40
2578 4648 4.398044 ACAACTTTCGTCCAACAGTGAAAT 59.602 37.500 0.00 0.00 30.68 2.17
2579 4649 3.754323 ACAACTTTCGTCCAACAGTGAAA 59.246 39.130 0.00 0.00 0.00 2.69
2580 4650 3.340034 ACAACTTTCGTCCAACAGTGAA 58.660 40.909 0.00 0.00 0.00 3.18
2581 4651 2.980568 ACAACTTTCGTCCAACAGTGA 58.019 42.857 0.00 0.00 0.00 3.41
2582 4652 3.303132 GCTACAACTTTCGTCCAACAGTG 60.303 47.826 0.00 0.00 0.00 3.66
2583 4653 2.870411 GCTACAACTTTCGTCCAACAGT 59.130 45.455 0.00 0.00 0.00 3.55
2584 4654 3.131396 AGCTACAACTTTCGTCCAACAG 58.869 45.455 0.00 0.00 0.00 3.16
2585 4655 3.188159 AGCTACAACTTTCGTCCAACA 57.812 42.857 0.00 0.00 0.00 3.33
2586 4656 4.986659 TCTAAGCTACAACTTTCGTCCAAC 59.013 41.667 0.00 0.00 0.00 3.77
2587 4657 5.204409 TCTAAGCTACAACTTTCGTCCAA 57.796 39.130 0.00 0.00 0.00 3.53
2588 4658 4.859304 TCTAAGCTACAACTTTCGTCCA 57.141 40.909 0.00 0.00 0.00 4.02
2589 4659 5.408356 TGATCTAAGCTACAACTTTCGTCC 58.592 41.667 0.00 0.00 0.00 4.79
2590 4660 6.323266 TCTGATCTAAGCTACAACTTTCGTC 58.677 40.000 0.00 0.00 0.00 4.20
2591 4661 6.151312 TCTCTGATCTAAGCTACAACTTTCGT 59.849 38.462 0.00 0.00 0.00 3.85
2592 4662 6.556212 TCTCTGATCTAAGCTACAACTTTCG 58.444 40.000 0.00 0.00 0.00 3.46
2619 4689 2.485426 CGAGACCATCAAAGCATGTGTT 59.515 45.455 0.00 0.00 0.00 3.32
2622 4692 1.089920 GCGAGACCATCAAAGCATGT 58.910 50.000 0.00 0.00 0.00 3.21
2693 4763 3.057033 GCTAAAACGGTAGTCAGGTCAGA 60.057 47.826 0.00 0.00 0.00 3.27
2745 4816 3.671716 ACAGGGTAAAAACTAGAAGCGG 58.328 45.455 0.00 0.00 0.00 5.52
2760 4831 4.972751 AACATAATGCCAAAAACAGGGT 57.027 36.364 0.00 0.00 0.00 4.34
2772 4843 5.469760 AGCAAGGAAAAACCAAACATAATGC 59.530 36.000 0.00 0.00 42.04 3.56
2775 4846 5.983540 ACAGCAAGGAAAAACCAAACATAA 58.016 33.333 0.00 0.00 42.04 1.90
2788 4859 4.776349 TCAACAAGTCTTACAGCAAGGAA 58.224 39.130 0.00 0.00 34.76 3.36
2790 4861 6.801539 TTATCAACAAGTCTTACAGCAAGG 57.198 37.500 0.00 0.00 34.76 3.61
2791 4862 9.683069 AAAATTATCAACAAGTCTTACAGCAAG 57.317 29.630 0.00 0.00 35.38 4.01
2794 4865 9.846248 ATCAAAATTATCAACAAGTCTTACAGC 57.154 29.630 0.00 0.00 0.00 4.40
2830 4901 6.749578 CGCCAAAATGTGTGCTATTTGTATTA 59.250 34.615 0.00 0.00 32.29 0.98
2835 4906 3.121611 CACGCCAAAATGTGTGCTATTTG 59.878 43.478 0.00 0.00 39.60 2.32
2855 5210 2.959507 AAAACAAGTCCCAAGCACAC 57.040 45.000 0.00 0.00 0.00 3.82
2889 5244 7.118390 GCAGACAGTTTGACAAGTAACTATCAT 59.882 37.037 0.00 0.00 31.79 2.45
2893 5248 5.753438 CAGCAGACAGTTTGACAAGTAACTA 59.247 40.000 0.00 0.00 33.49 2.24
2897 5252 3.466836 CCAGCAGACAGTTTGACAAGTA 58.533 45.455 0.00 0.00 0.00 2.24
2915 5270 0.251341 AAGGTTGGCTGCTAACCCAG 60.251 55.000 35.05 0.00 46.93 4.45
2919 5274 2.030805 CAGAACAAGGTTGGCTGCTAAC 60.031 50.000 19.13 19.13 31.42 2.34
2920 5275 2.229792 CAGAACAAGGTTGGCTGCTAA 58.770 47.619 0.00 0.00 31.42 3.09
2927 5282 4.821805 ACATGTCTTACAGAACAAGGTTGG 59.178 41.667 0.00 0.00 0.00 3.77
2931 5286 6.808008 ATTGACATGTCTTACAGAACAAGG 57.192 37.500 25.55 0.00 0.00 3.61
2949 5304 9.076596 GCAGAGGACAAAATTATTGTTATTGAC 57.923 33.333 7.23 0.00 31.96 3.18
2950 5305 8.250332 GGCAGAGGACAAAATTATTGTTATTGA 58.750 33.333 7.23 0.00 31.96 2.57
2951 5306 7.492344 GGGCAGAGGACAAAATTATTGTTATTG 59.508 37.037 7.23 0.00 31.96 1.90
2952 5307 7.400052 AGGGCAGAGGACAAAATTATTGTTATT 59.600 33.333 7.23 0.00 31.96 1.40
2953 5308 6.897413 AGGGCAGAGGACAAAATTATTGTTAT 59.103 34.615 7.23 1.59 31.96 1.89
2954 5309 6.152661 CAGGGCAGAGGACAAAATTATTGTTA 59.847 38.462 7.23 0.00 31.96 2.41
2955 5310 5.047092 CAGGGCAGAGGACAAAATTATTGTT 60.047 40.000 7.23 0.00 31.96 2.83
2956 5311 4.463891 CAGGGCAGAGGACAAAATTATTGT 59.536 41.667 5.92 5.92 34.97 2.71
2957 5312 4.463891 ACAGGGCAGAGGACAAAATTATTG 59.536 41.667 0.00 0.00 0.00 1.90
2958 5313 4.677182 ACAGGGCAGAGGACAAAATTATT 58.323 39.130 0.00 0.00 0.00 1.40
2959 5314 4.322057 ACAGGGCAGAGGACAAAATTAT 57.678 40.909 0.00 0.00 0.00 1.28
2960 5315 3.806949 ACAGGGCAGAGGACAAAATTA 57.193 42.857 0.00 0.00 0.00 1.40
2961 5316 2.683211 ACAGGGCAGAGGACAAAATT 57.317 45.000 0.00 0.00 0.00 1.82
2962 5317 2.108952 AGAACAGGGCAGAGGACAAAAT 59.891 45.455 0.00 0.00 0.00 1.82
2963 5318 1.494721 AGAACAGGGCAGAGGACAAAA 59.505 47.619 0.00 0.00 0.00 2.44
2964 5319 1.140312 AGAACAGGGCAGAGGACAAA 58.860 50.000 0.00 0.00 0.00 2.83
2976 5331 7.210873 ACACAAAGTAGAAAGAGTAGAACAGG 58.789 38.462 0.00 0.00 0.00 4.00
2982 5337 8.420374 TTGACAACACAAAGTAGAAAGAGTAG 57.580 34.615 0.00 0.00 0.00 2.57
2997 5352 3.242903 CGTGGCATTACTTTGACAACACA 60.243 43.478 0.00 0.00 36.09 3.72
2999 5354 3.206964 TCGTGGCATTACTTTGACAACA 58.793 40.909 0.00 0.00 36.09 3.33
3065 5420 4.692228 TGCTATCTTGATACACGATGCAA 58.308 39.130 0.00 0.00 30.45 4.08
3151 5507 2.338809 ACTTCCCTCTGTGGTCATTCA 58.661 47.619 0.00 0.00 0.00 2.57
3157 5513 2.972348 TCAGTAACTTCCCTCTGTGGT 58.028 47.619 0.00 0.00 0.00 4.16
3163 5519 6.547930 AAGTTCCTATCAGTAACTTCCCTC 57.452 41.667 0.00 0.00 38.71 4.30
3181 5539 7.072030 CACATGCAACAAGTAGTCTAAAGTTC 58.928 38.462 0.00 0.00 0.00 3.01
3193 5551 3.480470 AGAGTTAGCACATGCAACAAGT 58.520 40.909 6.64 0.24 45.16 3.16
3194 5552 4.494350 AAGAGTTAGCACATGCAACAAG 57.506 40.909 6.64 0.00 45.16 3.16
3211 5569 7.494625 TGATGGCGTTCCTAGTAAAATAAAGAG 59.505 37.037 0.00 0.00 0.00 2.85
3217 5575 5.099042 AGTGATGGCGTTCCTAGTAAAAT 57.901 39.130 0.00 0.00 0.00 1.82
3224 5582 3.093814 TCAGTAAGTGATGGCGTTCCTA 58.906 45.455 0.00 0.00 0.00 2.94
3230 5588 2.386661 AGGTTCAGTAAGTGATGGCG 57.613 50.000 0.00 0.00 34.17 5.69
3271 5629 1.077930 TCCTCTACCGGTGGTCTCG 60.078 63.158 19.93 4.91 37.09 4.04
3273 5631 0.408700 AACTCCTCTACCGGTGGTCT 59.591 55.000 19.93 0.00 37.09 3.85
3274 5632 1.204231 GAAACTCCTCTACCGGTGGTC 59.796 57.143 19.93 1.53 37.09 4.02
3416 5774 3.815962 TCTTAATTAGCACAACAACGCCA 59.184 39.130 0.00 0.00 0.00 5.69
3501 5861 4.367166 TGACTATTATCCTCCACACCCAA 58.633 43.478 0.00 0.00 0.00 4.12
3525 5886 3.427425 CGGCGCCATTTGTCCGAA 61.427 61.111 28.98 0.00 44.23 4.30
3579 5940 3.393472 GCTGTAGCCCCTGAATCTG 57.607 57.895 0.00 0.00 34.31 2.90
3622 5983 4.373156 AAGGCCAGACAATAACTTCAGT 57.627 40.909 5.01 0.00 0.00 3.41
3623 5984 5.712152 AAAAGGCCAGACAATAACTTCAG 57.288 39.130 5.01 0.00 0.00 3.02
3788 6149 7.292319 GGCCCATTAGTCTTAGGGTTAATTAA 58.708 38.462 0.00 0.00 43.42 1.40
3823 6184 8.060689 TGGGGTGTAGTGTTAGAGTATGTAATA 58.939 37.037 0.00 0.00 0.00 0.98
3829 6190 4.944177 AGTGGGGTGTAGTGTTAGAGTAT 58.056 43.478 0.00 0.00 0.00 2.12
3909 6271 7.541162 GTTTTTAGGTGTTAGGTTTGTCTTGT 58.459 34.615 0.00 0.00 0.00 3.16
3913 6275 6.258507 TCTCGTTTTTAGGTGTTAGGTTTGTC 59.741 38.462 0.00 0.00 0.00 3.18
3945 6307 9.443323 TTGAGAATGATAAAACAAACCGAGATA 57.557 29.630 0.00 0.00 0.00 1.98
3963 6325 6.490040 TCCCAGTCCTTTTAAGTTTGAGAATG 59.510 38.462 0.00 0.00 0.00 2.67
3972 6334 4.388577 AAGCATCCCAGTCCTTTTAAGT 57.611 40.909 0.00 0.00 0.00 2.24
3975 6337 7.310361 CCAAAATAAAGCATCCCAGTCCTTTTA 60.310 37.037 0.00 0.00 0.00 1.52
3979 6341 4.026052 CCAAAATAAAGCATCCCAGTCCT 58.974 43.478 0.00 0.00 0.00 3.85
4058 6427 0.253113 TGGTGTCCATGGGATCCAGA 60.253 55.000 15.23 0.00 36.75 3.86
4093 6462 1.009078 CAGGTGGTCATACACATGCG 58.991 55.000 0.00 0.00 44.59 4.73
4192 6561 2.034879 GCATGGTGTCACCGACAGG 61.035 63.158 17.27 2.89 43.57 4.00
4222 6591 0.393132 TGCAAACCAACAGTCGTCCA 60.393 50.000 0.00 0.00 0.00 4.02
4251 6620 1.302832 CGCAAGCCCTCCACTCTTT 60.303 57.895 0.00 0.00 0.00 2.52
4273 6642 0.905357 CACCCCTCCTCGTCATTCTT 59.095 55.000 0.00 0.00 0.00 2.52
4304 6674 2.560119 AAAGTTTGCGGCATCGGCA 61.560 52.632 2.28 0.00 43.71 5.69
4312 6682 1.002468 CAGTGACCTCAAAGTTTGCGG 60.002 52.381 20.60 20.60 41.27 5.69
4317 6687 0.535102 CGGGCAGTGACCTCAAAGTT 60.535 55.000 14.67 0.00 0.00 2.66
4329 6699 2.203437 GTTTTCCCCACGGGCAGT 60.203 61.111 0.00 0.00 43.94 4.40
4373 6743 2.192979 GGGATCTTGGGCATGCGA 59.807 61.111 12.44 3.25 0.00 5.10
4409 6779 2.669569 GCTGCGCAAAGGACCTCA 60.670 61.111 13.05 0.00 0.00 3.86
4511 6881 0.249398 GTCTGTGGCGGTGAGGTTAT 59.751 55.000 0.00 0.00 0.00 1.89
4512 6882 1.116536 TGTCTGTGGCGGTGAGGTTA 61.117 55.000 0.00 0.00 0.00 2.85
4527 6897 4.065281 GCTACCCGCCACGTGTCT 62.065 66.667 15.65 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.