Multiple sequence alignment - TraesCS1B01G173700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G173700 chr1B 100.000 6728 0 0 1 6728 310925572 310932299 0.000000e+00 12425.0
1 TraesCS1B01G173700 chr1D 95.380 5346 140 28 91 5406 217141597 217146865 0.000000e+00 8405.0
2 TraesCS1B01G173700 chr1D 86.937 1110 52 40 5359 6434 217146864 217147914 0.000000e+00 1160.0
3 TraesCS1B01G173700 chr1A 89.767 6391 353 120 93 6382 278140515 278146705 0.000000e+00 7901.0
4 TraesCS1B01G173700 chr7B 80.793 656 89 28 1536 2189 602938414 602939034 4.720000e-131 479.0
5 TraesCS1B01G173700 chr7B 85.526 76 11 0 4526 4601 602939910 602939985 5.590000e-11 80.5
6 TraesCS1B01G173700 chr7D 80.763 655 88 25 1536 2189 556120969 556121586 1.700000e-130 477.0
7 TraesCS1B01G173700 chr7D 85.526 76 11 0 4526 4601 556122445 556122520 5.590000e-11 80.5
8 TraesCS1B01G173700 chr7A 80.518 657 95 25 1536 2189 641581297 641580671 2.200000e-129 473.0
9 TraesCS1B01G173700 chr7A 86.842 76 10 0 4526 4601 641579801 641579726 1.200000e-12 86.1
10 TraesCS1B01G173700 chr2D 81.551 477 75 11 1731 2202 480778437 480777969 1.370000e-101 381.0
11 TraesCS1B01G173700 chr6A 77.259 686 119 29 1523 2203 415907638 415906985 1.070000e-97 368.0
12 TraesCS1B01G173700 chr2A 77.661 667 107 32 1542 2202 623564684 623564054 1.070000e-97 368.0
13 TraesCS1B01G173700 chr2B 77.429 669 102 34 1542 2202 563924028 563923401 2.980000e-93 353.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G173700 chr1B 310925572 310932299 6727 False 12425.00 12425 100.0000 1 6728 1 chr1B.!!$F1 6727
1 TraesCS1B01G173700 chr1D 217141597 217147914 6317 False 4782.50 8405 91.1585 91 6434 2 chr1D.!!$F1 6343
2 TraesCS1B01G173700 chr1A 278140515 278146705 6190 False 7901.00 7901 89.7670 93 6382 1 chr1A.!!$F1 6289
3 TraesCS1B01G173700 chr7B 602938414 602939985 1571 False 279.75 479 83.1595 1536 4601 2 chr7B.!!$F1 3065
4 TraesCS1B01G173700 chr7D 556120969 556122520 1551 False 278.75 477 83.1445 1536 4601 2 chr7D.!!$F1 3065
5 TraesCS1B01G173700 chr7A 641579726 641581297 1571 True 279.55 473 83.6800 1536 4601 2 chr7A.!!$R1 3065
6 TraesCS1B01G173700 chr6A 415906985 415907638 653 True 368.00 368 77.2590 1523 2203 1 chr6A.!!$R1 680
7 TraesCS1B01G173700 chr2A 623564054 623564684 630 True 368.00 368 77.6610 1542 2202 1 chr2A.!!$R1 660
8 TraesCS1B01G173700 chr2B 563923401 563924028 627 True 353.00 353 77.4290 1542 2202 1 chr2B.!!$R1 660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
155 156 0.032615 AGAGGGTACAGGGAGAGCAG 60.033 60.0 0.00 0.00 0.00 4.24 F
484 500 0.318275 TATACATGCATCGCGTCGCA 60.318 50.0 23.19 23.19 43.45 5.10 F
2337 2476 0.042731 AGGGGGAAGGTGAAGATCGA 59.957 55.0 0.00 0.00 0.00 3.59 F
2339 2490 0.178301 GGGGAAGGTGAAGATCGACC 59.822 60.0 0.00 3.99 0.00 4.79 F
3567 3837 0.662619 TGCCAACAGCTTCGTTTCTG 59.337 50.0 0.00 0.00 44.23 3.02 F
4529 4812 0.680061 ACTCGGACAACAACTCTCCC 59.320 55.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 1558 1.577736 CACCTCCTTCATCTCCACCT 58.422 55.000 0.00 0.00 0.00 4.00 R
2608 2759 6.279123 CAACTATGGATATCATCAGATCGGG 58.721 44.000 4.83 0.00 37.30 5.14 R
3249 3517 0.106268 TGCCCTTTGGAAGCTTCACA 60.106 50.000 27.02 18.92 0.00 3.58 R
3886 4163 1.605710 CAAGGTGCAGACAGAAACCTG 59.394 52.381 0.00 0.00 42.25 4.00 R
4838 5121 0.413832 TAGCCCCAGAGGAGAGTGTT 59.586 55.000 0.00 0.00 38.24 3.32 R
6255 6670 0.033208 TCATAACCGGTACCGTCCCT 60.033 55.000 31.24 15.32 37.81 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.263968 CATACGGTGGAGATACTTTCAGT 57.736 43.478 0.00 0.00 0.00 3.41
25 26 3.594603 ACGGTGGAGATACTTTCAGTG 57.405 47.619 0.00 0.00 0.00 3.66
26 27 3.162666 ACGGTGGAGATACTTTCAGTGA 58.837 45.455 0.00 0.00 0.00 3.41
27 28 3.056749 ACGGTGGAGATACTTTCAGTGAC 60.057 47.826 0.00 0.00 0.00 3.67
28 29 3.676324 CGGTGGAGATACTTTCAGTGACC 60.676 52.174 0.00 0.00 0.00 4.02
29 30 3.260884 GGTGGAGATACTTTCAGTGACCA 59.739 47.826 0.00 0.00 0.00 4.02
30 31 4.080863 GGTGGAGATACTTTCAGTGACCAT 60.081 45.833 0.00 0.00 0.00 3.55
31 32 5.128827 GGTGGAGATACTTTCAGTGACCATA 59.871 44.000 0.00 0.00 0.00 2.74
32 33 6.183361 GGTGGAGATACTTTCAGTGACCATAT 60.183 42.308 0.00 0.00 0.00 1.78
33 34 7.015292 GGTGGAGATACTTTCAGTGACCATATA 59.985 40.741 0.00 0.00 0.00 0.86
34 35 7.868415 GTGGAGATACTTTCAGTGACCATATAC 59.132 40.741 0.00 0.00 0.00 1.47
35 36 7.785028 TGGAGATACTTTCAGTGACCATATACT 59.215 37.037 0.00 0.00 0.00 2.12
36 37 9.298250 GGAGATACTTTCAGTGACCATATACTA 57.702 37.037 0.00 0.00 0.00 1.82
38 39 9.080097 AGATACTTTCAGTGACCATATACTACC 57.920 37.037 0.00 0.00 0.00 3.18
39 40 8.777578 ATACTTTCAGTGACCATATACTACCA 57.222 34.615 0.00 0.00 0.00 3.25
40 41 7.490657 ACTTTCAGTGACCATATACTACCAA 57.509 36.000 0.00 0.00 0.00 3.67
41 42 7.556844 ACTTTCAGTGACCATATACTACCAAG 58.443 38.462 0.00 0.00 0.00 3.61
42 43 7.180408 ACTTTCAGTGACCATATACTACCAAGT 59.820 37.037 0.00 0.00 39.91 3.16
43 44 7.490657 TTCAGTGACCATATACTACCAAGTT 57.509 36.000 0.00 0.00 37.15 2.66
44 45 6.873997 TCAGTGACCATATACTACCAAGTTG 58.126 40.000 0.00 0.00 37.15 3.16
45 46 5.523916 CAGTGACCATATACTACCAAGTTGC 59.476 44.000 0.00 0.00 37.15 4.17
46 47 5.188948 AGTGACCATATACTACCAAGTTGCA 59.811 40.000 0.00 0.00 37.15 4.08
47 48 5.878116 GTGACCATATACTACCAAGTTGCAA 59.122 40.000 0.00 0.00 37.15 4.08
48 49 6.037172 GTGACCATATACTACCAAGTTGCAAG 59.963 42.308 0.00 0.00 37.15 4.01
49 50 4.881850 ACCATATACTACCAAGTTGCAAGC 59.118 41.667 0.00 0.00 37.15 4.01
50 51 4.275936 CCATATACTACCAAGTTGCAAGCC 59.724 45.833 0.00 0.00 37.15 4.35
51 52 3.721087 ATACTACCAAGTTGCAAGCCT 57.279 42.857 0.00 0.00 37.15 4.58
52 53 4.837093 ATACTACCAAGTTGCAAGCCTA 57.163 40.909 0.00 0.00 37.15 3.93
53 54 3.721087 ACTACCAAGTTGCAAGCCTAT 57.279 42.857 0.00 0.00 29.00 2.57
54 55 4.034285 ACTACCAAGTTGCAAGCCTATT 57.966 40.909 0.00 0.00 29.00 1.73
55 56 3.758554 ACTACCAAGTTGCAAGCCTATTG 59.241 43.478 0.00 0.44 29.00 1.90
56 57 1.895131 ACCAAGTTGCAAGCCTATTGG 59.105 47.619 18.48 18.48 42.29 3.16
57 58 1.205417 CCAAGTTGCAAGCCTATTGGG 59.795 52.381 0.00 0.00 34.80 4.12
67 68 3.525800 AGCCTATTGGGTTTCAAGTGT 57.474 42.857 0.00 0.00 42.12 3.55
68 69 4.650972 AGCCTATTGGGTTTCAAGTGTA 57.349 40.909 0.00 0.00 42.12 2.90
69 70 4.993028 AGCCTATTGGGTTTCAAGTGTAA 58.007 39.130 0.00 0.00 42.12 2.41
70 71 5.390387 AGCCTATTGGGTTTCAAGTGTAAA 58.610 37.500 0.00 0.00 42.12 2.01
71 72 5.836358 AGCCTATTGGGTTTCAAGTGTAAAA 59.164 36.000 0.00 0.00 42.12 1.52
72 73 6.325286 AGCCTATTGGGTTTCAAGTGTAAAAA 59.675 34.615 0.00 0.00 42.12 1.94
141 142 2.956987 CAGTGGCGCAAAAGAGGG 59.043 61.111 10.83 0.00 0.00 4.30
142 143 1.898574 CAGTGGCGCAAAAGAGGGT 60.899 57.895 10.83 0.00 0.00 4.34
143 144 0.605319 CAGTGGCGCAAAAGAGGGTA 60.605 55.000 10.83 0.00 0.00 3.69
144 145 0.605589 AGTGGCGCAAAAGAGGGTAC 60.606 55.000 10.83 0.00 0.00 3.34
147 148 1.305930 GGCGCAAAAGAGGGTACAGG 61.306 60.000 10.83 0.00 0.00 4.00
149 150 0.323629 CGCAAAAGAGGGTACAGGGA 59.676 55.000 0.00 0.00 0.00 4.20
150 151 1.676014 CGCAAAAGAGGGTACAGGGAG 60.676 57.143 0.00 0.00 0.00 4.30
151 152 1.628846 GCAAAAGAGGGTACAGGGAGA 59.371 52.381 0.00 0.00 0.00 3.71
152 153 2.355209 GCAAAAGAGGGTACAGGGAGAG 60.355 54.545 0.00 0.00 0.00 3.20
153 154 1.574263 AAAGAGGGTACAGGGAGAGC 58.426 55.000 0.00 0.00 0.00 4.09
154 155 0.413832 AAGAGGGTACAGGGAGAGCA 59.586 55.000 0.00 0.00 0.00 4.26
155 156 0.032615 AGAGGGTACAGGGAGAGCAG 60.033 60.000 0.00 0.00 0.00 4.24
156 157 1.681486 GAGGGTACAGGGAGAGCAGC 61.681 65.000 0.00 0.00 0.00 5.25
157 158 2.736826 GGGTACAGGGAGAGCAGCC 61.737 68.421 0.00 0.00 0.00 4.85
158 159 2.496817 GTACAGGGAGAGCAGCCG 59.503 66.667 0.00 0.00 0.00 5.52
159 160 3.461773 TACAGGGAGAGCAGCCGC 61.462 66.667 0.00 0.00 38.99 6.53
484 500 0.318275 TATACATGCATCGCGTCGCA 60.318 50.000 23.19 23.19 43.45 5.10
505 521 1.061887 GCACGCGTGACAAAACTGT 59.938 52.632 41.19 0.00 0.00 3.55
506 522 0.522495 GCACGCGTGACAAAACTGTT 60.522 50.000 41.19 0.00 0.00 3.16
507 523 1.452717 CACGCGTGACAAAACTGTTC 58.547 50.000 34.93 0.00 0.00 3.18
565 582 1.355210 CCAACAAAACGCTGCGAGT 59.645 52.632 30.47 17.31 0.00 4.18
621 638 8.914213 ATGGGTTGAGATCTGAGATAATCTAT 57.086 34.615 0.00 0.00 32.43 1.98
1368 1421 7.878477 TTCATGATGTTGATTTGCTCTTTTC 57.122 32.000 0.00 0.00 0.00 2.29
1438 1493 0.594110 GGGGTTTGCGAATTTGACGA 59.406 50.000 0.00 0.00 0.00 4.20
1450 1505 4.555262 GAATTTGACGAAGGGCAATTTGA 58.445 39.130 0.00 0.00 0.00 2.69
1453 1508 1.202114 TGACGAAGGGCAATTTGATGC 59.798 47.619 0.00 0.00 45.67 3.91
1473 1528 2.193536 AGGTTTGCTGTGCGGGAAC 61.194 57.895 0.00 0.00 0.00 3.62
1503 1558 1.807742 CATTTCGAGGCGGTGGTTTTA 59.192 47.619 0.00 0.00 0.00 1.52
2051 2169 1.066430 GGAAGTTCCGCCACATCTACA 60.066 52.381 6.06 0.00 0.00 2.74
2337 2476 0.042731 AGGGGGAAGGTGAAGATCGA 59.957 55.000 0.00 0.00 0.00 3.59
2339 2490 0.178301 GGGGAAGGTGAAGATCGACC 59.822 60.000 0.00 3.99 0.00 4.79
2344 2495 2.680312 AGGTGAAGATCGACCATGTG 57.320 50.000 12.45 0.00 34.36 3.21
2608 2759 2.851195 TGGAGACTTCTTCAGGTTTGC 58.149 47.619 0.00 0.00 0.00 3.68
2755 3011 5.974108 TGCCTTGAATGGTAGTAGTAGAAC 58.026 41.667 0.00 0.00 0.00 3.01
2780 3036 7.881232 ACTTAAGGTACTACTAGCATGCAAAAA 59.119 33.333 21.98 1.32 38.49 1.94
2814 3070 3.062763 CCGCACAATGTTGCCAAATTAA 58.937 40.909 3.08 0.00 39.53 1.40
2820 3076 7.253618 CGCACAATGTTGCCAAATTAATAGTAC 60.254 37.037 0.00 0.00 39.53 2.73
2821 3077 7.759433 GCACAATGTTGCCAAATTAATAGTACT 59.241 33.333 0.00 0.00 36.42 2.73
2858 3114 1.279271 GATCCCGAACCCCCTGATATG 59.721 57.143 0.00 0.00 0.00 1.78
3204 3472 3.897141 TGAATTAGTACGCCACCATCA 57.103 42.857 0.00 0.00 0.00 3.07
3216 3484 2.028748 GCCACCATCAGTTGCTCAAATT 60.029 45.455 0.00 0.00 34.32 1.82
3232 3500 5.118203 GCTCAAATTTCACAGCTTGATGTTC 59.882 40.000 6.19 0.00 32.84 3.18
3249 3517 2.224670 TGTTCGGTCTTTAGCACCCAAT 60.225 45.455 0.00 0.00 0.00 3.16
3289 3557 1.344114 TGGGAATGCTTGGCAAACTTC 59.656 47.619 0.00 4.62 43.62 3.01
3358 3626 9.973450 TGTAGATGAGAAGCTATTTGTCTAATC 57.027 33.333 2.49 2.49 31.62 1.75
3415 3684 5.734855 ATCTAATGAAATGCCGTACACAC 57.265 39.130 0.00 0.00 0.00 3.82
3422 3691 2.295253 ATGCCGTACACACTAGAAGC 57.705 50.000 0.00 0.00 0.00 3.86
3423 3692 0.963225 TGCCGTACACACTAGAAGCA 59.037 50.000 0.00 0.00 0.00 3.91
3424 3693 1.067846 TGCCGTACACACTAGAAGCAG 60.068 52.381 0.00 0.00 0.00 4.24
3425 3694 1.201647 GCCGTACACACTAGAAGCAGA 59.798 52.381 0.00 0.00 0.00 4.26
3427 3696 3.676324 GCCGTACACACTAGAAGCAGAAT 60.676 47.826 0.00 0.00 0.00 2.40
3428 3697 4.106197 CCGTACACACTAGAAGCAGAATC 58.894 47.826 0.00 0.00 0.00 2.52
3433 3702 5.779922 ACACACTAGAAGCAGAATCGTTTA 58.220 37.500 0.00 0.00 0.00 2.01
3434 3703 5.634020 ACACACTAGAAGCAGAATCGTTTAC 59.366 40.000 0.00 0.00 0.00 2.01
3517 3787 6.540438 TGTCCCTGTACAAATAGTAAGAGG 57.460 41.667 0.00 0.00 35.63 3.69
3533 3803 1.632409 AGAGGGCAGCAGAGAATTGAA 59.368 47.619 0.00 0.00 0.00 2.69
3536 3806 4.080129 AGAGGGCAGCAGAGAATTGAAATA 60.080 41.667 0.00 0.00 0.00 1.40
3567 3837 0.662619 TGCCAACAGCTTCGTTTCTG 59.337 50.000 0.00 0.00 44.23 3.02
3886 4163 1.134788 CAGTCCCGTACTCCAACCATC 60.135 57.143 0.00 0.00 35.76 3.51
3950 4227 5.295950 TGAAATTGGTACATTTGGCAGTTG 58.704 37.500 0.00 0.00 39.30 3.16
4036 4313 6.450545 TGCTACTTCATGGAATCTTATCTCG 58.549 40.000 0.00 0.00 0.00 4.04
4237 4514 6.128363 CCAGGGTACTTTTTGTTTAGTCGATC 60.128 42.308 0.00 0.00 0.00 3.69
4245 4522 8.885722 ACTTTTTGTTTAGTCGATCACAGTAAA 58.114 29.630 0.00 0.00 0.00 2.01
4529 4812 0.680061 ACTCGGACAACAACTCTCCC 59.320 55.000 0.00 0.00 0.00 4.30
4796 5079 7.322664 CACATATAATGTTGTTTGGAAAGGCT 58.677 34.615 0.00 0.00 42.70 4.58
4805 5088 5.873179 TGTTTGGAAAGGCTATTCTTACG 57.127 39.130 0.00 0.00 0.00 3.18
4838 5121 3.394274 TGACTTCAAGTGGATCAAGGGAA 59.606 43.478 0.00 0.00 0.00 3.97
4902 5185 0.998928 TGGGCTGAAGGCAGGAAATA 59.001 50.000 6.20 0.00 42.53 1.40
4946 5229 4.514066 TCAATCTGCATTGGATTCTCATCG 59.486 41.667 0.38 0.00 40.08 3.84
4949 5232 2.356695 CTGCATTGGATTCTCATCGCAA 59.643 45.455 0.00 0.00 0.00 4.85
4964 5247 1.372087 CGCAAGGTCATGAGGCTTCC 61.372 60.000 0.00 0.00 0.00 3.46
5048 5331 3.393800 CATCGACTTGTCTGTCTTTGGT 58.606 45.455 0.00 0.00 35.00 3.67
5159 5442 2.358615 GCCGTCATGCACACTGGA 60.359 61.111 0.00 0.00 0.00 3.86
5191 5474 6.463614 CCATTCAGGTGAGAAGTCCCTTATAG 60.464 46.154 0.00 0.00 0.00 1.31
5218 5501 5.756347 TGCACAGTATTCTTTAACTCGTTGT 59.244 36.000 0.00 0.00 0.00 3.32
5261 5544 6.973843 TCATCTTCCAATATTGCAGTAATGC 58.026 36.000 8.51 8.51 0.00 3.56
5341 5624 2.288273 ACGGAGGCTGACGATAATAAGC 60.288 50.000 14.19 0.00 34.86 3.09
5425 5752 2.211806 GATGAGCTCCAGCATGAGTTC 58.788 52.381 12.15 10.95 45.16 3.01
5487 5814 4.554586 CCATATGCATGCGTTTTATTAGCG 59.445 41.667 19.31 0.00 0.00 4.26
5523 5850 1.954146 GTCAAGCGGAACTGCGTCA 60.954 57.895 0.00 0.00 40.67 4.35
5589 5921 4.690748 TCACTGTATTTGTCTGTTAGCTGC 59.309 41.667 0.00 0.00 0.00 5.25
5653 5986 1.845809 GCGGCTGAGTTGGAAGTGTG 61.846 60.000 0.00 0.00 0.00 3.82
5654 5987 1.845809 CGGCTGAGTTGGAAGTGTGC 61.846 60.000 0.00 0.00 0.00 4.57
5655 5988 0.536006 GGCTGAGTTGGAAGTGTGCT 60.536 55.000 0.00 0.00 0.00 4.40
5656 5989 1.312815 GCTGAGTTGGAAGTGTGCTT 58.687 50.000 0.00 0.00 37.71 3.91
5677 6016 0.748450 TCAACGAACTCTTGGACGGT 59.252 50.000 0.00 0.00 0.00 4.83
5699 6038 5.527214 GGTTTTGCTTTGCTTGGAATAAAGT 59.473 36.000 0.00 0.00 34.69 2.66
5700 6039 6.038161 GGTTTTGCTTTGCTTGGAATAAAGTT 59.962 34.615 0.00 0.00 34.69 2.66
5701 6040 7.225734 GGTTTTGCTTTGCTTGGAATAAAGTTA 59.774 33.333 0.00 0.00 34.69 2.24
5702 6041 8.608317 GTTTTGCTTTGCTTGGAATAAAGTTAA 58.392 29.630 0.00 0.00 34.69 2.01
5703 6042 7.945033 TTGCTTTGCTTGGAATAAAGTTAAG 57.055 32.000 0.00 0.00 34.69 1.85
5704 6043 7.049799 TGCTTTGCTTGGAATAAAGTTAAGT 57.950 32.000 0.00 0.00 34.69 2.24
5763 6102 3.209410 CTGCCTGGGTAGATGAAATGTC 58.791 50.000 0.00 0.00 0.00 3.06
5824 6182 1.340211 TGGGACGTGTTGTTTCTTGGT 60.340 47.619 0.00 0.00 0.00 3.67
5834 6192 5.062058 GTGTTGTTTCTTGGTCATTGTTGTG 59.938 40.000 0.00 0.00 0.00 3.33
5835 6193 5.167845 GTTGTTTCTTGGTCATTGTTGTGT 58.832 37.500 0.00 0.00 0.00 3.72
5838 6196 5.184864 TGTTTCTTGGTCATTGTTGTGTCTT 59.815 36.000 0.00 0.00 0.00 3.01
5841 6199 5.890334 TCTTGGTCATTGTTGTGTCTTTTC 58.110 37.500 0.00 0.00 0.00 2.29
5844 6202 4.097741 TGGTCATTGTTGTGTCTTTTCTGG 59.902 41.667 0.00 0.00 0.00 3.86
5845 6203 4.338118 GGTCATTGTTGTGTCTTTTCTGGA 59.662 41.667 0.00 0.00 0.00 3.86
5868 6226 5.730296 TTGTTGTGTTCTTTTCCTGGAAA 57.270 34.783 17.65 17.65 0.00 3.13
5885 6243 1.197036 GAAAGCGAAAAGGTCTTCCCG 59.803 52.381 0.00 0.00 38.74 5.14
5923 6281 0.179145 CGATGGTGGTGGTACGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
5924 6282 1.183549 GATGGTGGTGGTACGAGACT 58.816 55.000 0.00 0.00 0.00 3.24
5925 6283 2.372264 GATGGTGGTGGTACGAGACTA 58.628 52.381 0.00 0.00 0.00 2.59
5926 6284 1.538047 TGGTGGTGGTACGAGACTAC 58.462 55.000 0.00 0.00 38.77 2.73
5928 6286 1.442769 GTGGTGGTACGAGACTACGA 58.557 55.000 0.00 0.00 40.36 3.43
6039 6415 0.523966 GTGAGAGAGACACGACCCTG 59.476 60.000 0.00 0.00 0.00 4.45
6040 6416 0.110678 TGAGAGAGACACGACCCTGT 59.889 55.000 0.00 0.00 0.00 4.00
6041 6417 1.249407 GAGAGAGACACGACCCTGTT 58.751 55.000 0.00 0.00 0.00 3.16
6042 6418 1.614413 GAGAGAGACACGACCCTGTTT 59.386 52.381 0.00 0.00 0.00 2.83
6043 6419 1.341531 AGAGAGACACGACCCTGTTTG 59.658 52.381 0.00 0.00 0.00 2.93
6135 6514 4.214327 GGCGCGAGGAGGAAGAGG 62.214 72.222 12.10 0.00 0.00 3.69
6140 6519 1.819905 CGAGGAGGAAGAGGAAGGC 59.180 63.158 0.00 0.00 0.00 4.35
6147 6526 3.249189 AAGAGGAAGGCGGCCACA 61.249 61.111 23.09 0.00 0.00 4.17
6170 6549 1.394618 GACTCGACTAGGCTGGACAT 58.605 55.000 4.33 0.00 0.00 3.06
6180 6559 2.505982 CTGGACATGCCTACCGGG 59.494 66.667 6.32 0.00 37.63 5.73
6183 6562 2.363975 GGACATGCCTACCGGGTGA 61.364 63.158 10.66 0.00 37.43 4.02
6255 6670 2.920384 TGGTGGCCTGTCACGCTA 60.920 61.111 3.32 0.00 38.46 4.26
6256 6671 2.125512 GGTGGCCTGTCACGCTAG 60.126 66.667 3.32 0.00 38.46 3.42
6257 6672 2.125512 GTGGCCTGTCACGCTAGG 60.126 66.667 3.32 0.00 37.14 3.02
6258 6673 3.390521 TGGCCTGTCACGCTAGGG 61.391 66.667 3.32 5.05 34.58 3.53
6259 6674 3.075005 GGCCTGTCACGCTAGGGA 61.075 66.667 14.59 0.00 34.58 4.20
6378 6794 1.376037 GGCCCCATACTCGCATAGC 60.376 63.158 0.00 0.00 0.00 2.97
6383 6799 2.425312 CCCCATACTCGCATAGCTCTAG 59.575 54.545 0.00 0.00 0.00 2.43
6384 6800 2.159310 CCCATACTCGCATAGCTCTAGC 60.159 54.545 0.00 0.00 42.49 3.42
6398 6814 4.733972 GCTCTAGCGTTCCATAAATTCC 57.266 45.455 0.00 0.00 0.00 3.01
6402 6818 6.097915 TCTAGCGTTCCATAAATTCCTAGG 57.902 41.667 0.82 0.82 0.00 3.02
6405 6821 3.146847 CGTTCCATAAATTCCTAGGGCC 58.853 50.000 9.46 0.00 0.00 5.80
6409 6825 5.779241 TCCATAAATTCCTAGGGCCTATG 57.221 43.478 14.95 11.88 0.00 2.23
6412 6828 6.443849 TCCATAAATTCCTAGGGCCTATGTAG 59.556 42.308 14.95 3.58 0.00 2.74
6422 6838 3.323979 AGGGCCTATGTAGGATGTAAACG 59.676 47.826 2.82 0.00 46.63 3.60
6491 6907 7.979444 TTATTGTCTAACAGTTCAAGGAAGG 57.021 36.000 0.00 0.00 0.00 3.46
6492 6908 5.367945 TTGTCTAACAGTTCAAGGAAGGT 57.632 39.130 0.00 0.00 0.00 3.50
6493 6909 5.367945 TGTCTAACAGTTCAAGGAAGGTT 57.632 39.130 0.00 0.00 0.00 3.50
6494 6910 5.751586 TGTCTAACAGTTCAAGGAAGGTTT 58.248 37.500 0.00 0.00 0.00 3.27
6495 6911 6.184789 TGTCTAACAGTTCAAGGAAGGTTTT 58.815 36.000 0.00 0.00 0.00 2.43
6496 6912 6.317893 TGTCTAACAGTTCAAGGAAGGTTTTC 59.682 38.462 0.00 0.00 0.00 2.29
6497 6913 6.542735 GTCTAACAGTTCAAGGAAGGTTTTCT 59.457 38.462 0.00 0.00 33.68 2.52
6498 6914 7.067129 GTCTAACAGTTCAAGGAAGGTTTTCTT 59.933 37.037 0.00 0.00 38.65 2.52
6513 6929 6.417191 GGTTTTCTTCCTGGAAAAACAAAC 57.583 37.500 26.18 21.25 46.26 2.93
6514 6930 6.170506 GGTTTTCTTCCTGGAAAAACAAACT 58.829 36.000 26.18 0.00 46.26 2.66
6515 6931 7.324935 GGTTTTCTTCCTGGAAAAACAAACTA 58.675 34.615 26.18 8.40 46.26 2.24
6516 6932 7.491372 GGTTTTCTTCCTGGAAAAACAAACTAG 59.509 37.037 26.18 8.22 46.26 2.57
6517 6933 7.948034 TTTCTTCCTGGAAAAACAAACTAGA 57.052 32.000 10.86 0.00 33.04 2.43
6518 6934 7.568199 TTCTTCCTGGAAAAACAAACTAGAG 57.432 36.000 10.86 0.00 0.00 2.43
6519 6935 6.659824 TCTTCCTGGAAAAACAAACTAGAGT 58.340 36.000 10.86 0.00 0.00 3.24
6520 6936 7.798071 TCTTCCTGGAAAAACAAACTAGAGTA 58.202 34.615 10.86 0.00 0.00 2.59
6521 6937 8.437575 TCTTCCTGGAAAAACAAACTAGAGTAT 58.562 33.333 10.86 0.00 0.00 2.12
6522 6938 8.617290 TTCCTGGAAAAACAAACTAGAGTATC 57.383 34.615 6.68 0.00 0.00 2.24
6523 6939 6.872020 TCCTGGAAAAACAAACTAGAGTATCG 59.128 38.462 0.00 0.00 42.67 2.92
6524 6940 6.872020 CCTGGAAAAACAAACTAGAGTATCGA 59.128 38.462 0.00 0.00 42.67 3.59
6525 6941 7.549488 CCTGGAAAAACAAACTAGAGTATCGAT 59.451 37.037 2.16 2.16 42.67 3.59
6526 6942 8.475331 TGGAAAAACAAACTAGAGTATCGATC 57.525 34.615 0.00 0.00 42.67 3.69
6527 6943 7.274904 TGGAAAAACAAACTAGAGTATCGATCG 59.725 37.037 9.36 9.36 42.67 3.69
6528 6944 7.487189 GGAAAAACAAACTAGAGTATCGATCGA 59.513 37.037 21.86 21.86 42.67 3.59
6529 6945 7.972623 AAAACAAACTAGAGTATCGATCGAG 57.027 36.000 23.84 10.18 42.67 4.04
6530 6946 6.680874 AACAAACTAGAGTATCGATCGAGT 57.319 37.500 23.84 10.85 42.67 4.18
6531 6947 6.680874 ACAAACTAGAGTATCGATCGAGTT 57.319 37.500 23.84 16.09 42.21 3.01
6532 6948 7.783090 ACAAACTAGAGTATCGATCGAGTTA 57.217 36.000 23.84 9.16 40.37 2.24
6533 6949 8.206325 ACAAACTAGAGTATCGATCGAGTTAA 57.794 34.615 23.84 6.08 40.37 2.01
6534 6950 8.121708 ACAAACTAGAGTATCGATCGAGTTAAC 58.878 37.037 23.84 17.07 40.37 2.01
6535 6951 8.336806 CAAACTAGAGTATCGATCGAGTTAACT 58.663 37.037 23.84 21.02 40.37 2.24
6536 6952 9.539825 AAACTAGAGTATCGATCGAGTTAACTA 57.460 33.333 23.84 18.58 40.37 2.24
6537 6953 9.539825 AACTAGAGTATCGATCGAGTTAACTAA 57.460 33.333 23.84 13.04 39.76 2.24
6538 6954 9.539825 ACTAGAGTATCGATCGAGTTAACTAAA 57.460 33.333 23.84 12.76 42.67 1.85
6540 6956 8.659925 AGAGTATCGATCGAGTTAACTAAAGA 57.340 34.615 23.84 9.05 42.67 2.52
6541 6957 8.767085 AGAGTATCGATCGAGTTAACTAAAGAG 58.233 37.037 23.84 1.02 42.67 2.85
6542 6958 7.354257 AGTATCGATCGAGTTAACTAAAGAGC 58.646 38.462 23.84 10.23 0.00 4.09
6543 6959 4.918037 TCGATCGAGTTAACTAAAGAGCC 58.082 43.478 15.15 4.71 0.00 4.70
6544 6960 4.639310 TCGATCGAGTTAACTAAAGAGCCT 59.361 41.667 15.15 0.00 0.00 4.58
6545 6961 5.125097 TCGATCGAGTTAACTAAAGAGCCTT 59.875 40.000 15.15 0.00 0.00 4.35
6546 6962 5.230306 CGATCGAGTTAACTAAAGAGCCTTG 59.770 44.000 10.26 0.00 0.00 3.61
6547 6963 4.243270 TCGAGTTAACTAAAGAGCCTTGC 58.757 43.478 8.42 0.00 0.00 4.01
6548 6964 3.371285 CGAGTTAACTAAAGAGCCTTGCC 59.629 47.826 8.42 0.00 0.00 4.52
6549 6965 3.335579 AGTTAACTAAAGAGCCTTGCCG 58.664 45.455 6.26 0.00 0.00 5.69
6550 6966 1.734163 TAACTAAAGAGCCTTGCCGC 58.266 50.000 0.00 0.00 0.00 6.53
6551 6967 0.036875 AACTAAAGAGCCTTGCCGCT 59.963 50.000 0.00 0.00 43.42 5.52
6552 6968 0.674895 ACTAAAGAGCCTTGCCGCTG 60.675 55.000 0.00 0.00 39.87 5.18
6553 6969 0.674895 CTAAAGAGCCTTGCCGCTGT 60.675 55.000 0.00 0.00 39.87 4.40
6554 6970 0.250727 TAAAGAGCCTTGCCGCTGTT 60.251 50.000 0.00 0.00 43.62 3.16
6555 6971 1.109323 AAAGAGCCTTGCCGCTGTTT 61.109 50.000 6.79 6.79 44.80 2.83
6556 6972 0.250727 AAGAGCCTTGCCGCTGTTTA 60.251 50.000 0.00 0.00 39.14 2.01
6557 6973 0.035056 AGAGCCTTGCCGCTGTTTAT 60.035 50.000 0.00 0.00 39.87 1.40
6558 6974 0.378610 GAGCCTTGCCGCTGTTTATC 59.621 55.000 0.00 0.00 39.87 1.75
6559 6975 1.062525 GCCTTGCCGCTGTTTATCG 59.937 57.895 0.00 0.00 0.00 2.92
6560 6976 1.062525 CCTTGCCGCTGTTTATCGC 59.937 57.895 0.00 0.00 0.00 4.58
6565 6981 3.014036 CGCTGTTTATCGCGCCAT 58.986 55.556 0.00 0.00 43.01 4.40
6566 6982 1.351707 CGCTGTTTATCGCGCCATT 59.648 52.632 0.00 0.00 43.01 3.16
6567 6983 0.248054 CGCTGTTTATCGCGCCATTT 60.248 50.000 0.00 0.00 43.01 2.32
6568 6984 1.004398 CGCTGTTTATCGCGCCATTTA 60.004 47.619 0.00 0.00 43.01 1.40
6569 6985 2.372350 GCTGTTTATCGCGCCATTTAC 58.628 47.619 0.00 0.00 0.00 2.01
6570 6986 2.223157 GCTGTTTATCGCGCCATTTACA 60.223 45.455 0.00 1.73 0.00 2.41
6571 6987 3.548014 GCTGTTTATCGCGCCATTTACAT 60.548 43.478 0.00 0.00 0.00 2.29
6572 6988 4.203950 TGTTTATCGCGCCATTTACATC 57.796 40.909 0.00 0.00 0.00 3.06
6573 6989 3.002862 TGTTTATCGCGCCATTTACATCC 59.997 43.478 0.00 0.00 0.00 3.51
6574 6990 2.831685 TATCGCGCCATTTACATCCT 57.168 45.000 0.00 0.00 0.00 3.24
6575 6991 1.229428 ATCGCGCCATTTACATCCTG 58.771 50.000 0.00 0.00 0.00 3.86
6576 6992 0.813610 TCGCGCCATTTACATCCTGG 60.814 55.000 0.00 0.00 0.00 4.45
6577 6993 1.785041 CGCGCCATTTACATCCTGGG 61.785 60.000 0.00 0.00 0.00 4.45
6578 6994 0.751643 GCGCCATTTACATCCTGGGT 60.752 55.000 0.00 0.00 0.00 4.51
6579 6995 1.762708 CGCCATTTACATCCTGGGTT 58.237 50.000 0.00 0.00 0.00 4.11
6580 6996 1.676006 CGCCATTTACATCCTGGGTTC 59.324 52.381 0.00 0.00 0.00 3.62
6581 6997 2.733956 GCCATTTACATCCTGGGTTCA 58.266 47.619 0.00 0.00 0.00 3.18
6582 6998 3.299503 GCCATTTACATCCTGGGTTCAT 58.700 45.455 0.00 0.00 0.00 2.57
6583 6999 3.068590 GCCATTTACATCCTGGGTTCATG 59.931 47.826 0.00 0.00 0.00 3.07
6584 7000 3.638160 CCATTTACATCCTGGGTTCATGG 59.362 47.826 0.00 0.00 0.00 3.66
6585 7001 4.280819 CATTTACATCCTGGGTTCATGGT 58.719 43.478 0.00 0.00 0.00 3.55
6586 7002 4.396357 TTTACATCCTGGGTTCATGGTT 57.604 40.909 0.00 0.00 0.00 3.67
6587 7003 5.522315 TTTACATCCTGGGTTCATGGTTA 57.478 39.130 0.00 0.00 0.00 2.85
6588 7004 3.366052 ACATCCTGGGTTCATGGTTAC 57.634 47.619 0.00 0.00 0.00 2.50
6589 7005 2.919602 ACATCCTGGGTTCATGGTTACT 59.080 45.455 0.00 0.00 0.00 2.24
6590 7006 3.333680 ACATCCTGGGTTCATGGTTACTT 59.666 43.478 0.00 0.00 0.00 2.24
6591 7007 4.202673 ACATCCTGGGTTCATGGTTACTTT 60.203 41.667 0.00 0.00 0.00 2.66
6592 7008 4.463050 TCCTGGGTTCATGGTTACTTTT 57.537 40.909 0.00 0.00 0.00 2.27
6593 7009 4.403734 TCCTGGGTTCATGGTTACTTTTC 58.596 43.478 0.00 0.00 0.00 2.29
6594 7010 4.105697 TCCTGGGTTCATGGTTACTTTTCT 59.894 41.667 0.00 0.00 0.00 2.52
6595 7011 4.218417 CCTGGGTTCATGGTTACTTTTCTG 59.782 45.833 0.00 0.00 0.00 3.02
6596 7012 3.572255 TGGGTTCATGGTTACTTTTCTGC 59.428 43.478 0.00 0.00 0.00 4.26
6597 7013 3.056821 GGGTTCATGGTTACTTTTCTGCC 60.057 47.826 0.00 0.00 0.00 4.85
6598 7014 3.826729 GGTTCATGGTTACTTTTCTGCCT 59.173 43.478 0.00 0.00 0.00 4.75
6599 7015 4.082733 GGTTCATGGTTACTTTTCTGCCTC 60.083 45.833 0.00 0.00 0.00 4.70
6600 7016 4.640771 TCATGGTTACTTTTCTGCCTCT 57.359 40.909 0.00 0.00 0.00 3.69
6601 7017 4.985538 TCATGGTTACTTTTCTGCCTCTT 58.014 39.130 0.00 0.00 0.00 2.85
6602 7018 5.385198 TCATGGTTACTTTTCTGCCTCTTT 58.615 37.500 0.00 0.00 0.00 2.52
6603 7019 5.833131 TCATGGTTACTTTTCTGCCTCTTTT 59.167 36.000 0.00 0.00 0.00 2.27
6604 7020 6.323739 TCATGGTTACTTTTCTGCCTCTTTTT 59.676 34.615 0.00 0.00 0.00 1.94
6622 7038 3.641437 TTTTCCTTTTCATGACGCAGG 57.359 42.857 0.00 0.92 0.00 4.85
6623 7039 1.533625 TTCCTTTTCATGACGCAGGG 58.466 50.000 12.21 3.19 0.00 4.45
6624 7040 0.400213 TCCTTTTCATGACGCAGGGT 59.600 50.000 12.21 0.00 0.00 4.34
6625 7041 1.202879 TCCTTTTCATGACGCAGGGTT 60.203 47.619 12.21 0.00 0.00 4.11
6626 7042 2.039216 TCCTTTTCATGACGCAGGGTTA 59.961 45.455 12.21 0.00 0.00 2.85
6627 7043 2.161609 CCTTTTCATGACGCAGGGTTAC 59.838 50.000 0.00 0.00 0.00 2.50
6628 7044 2.552599 TTTCATGACGCAGGGTTACA 57.447 45.000 0.00 0.00 0.00 2.41
6629 7045 2.552599 TTCATGACGCAGGGTTACAA 57.447 45.000 0.00 0.00 0.00 2.41
6630 7046 2.779755 TCATGACGCAGGGTTACAAT 57.220 45.000 0.00 0.00 0.00 2.71
6631 7047 3.066291 TCATGACGCAGGGTTACAATT 57.934 42.857 0.00 0.00 0.00 2.32
6632 7048 3.006940 TCATGACGCAGGGTTACAATTC 58.993 45.455 0.00 0.00 0.00 2.17
6633 7049 2.851263 TGACGCAGGGTTACAATTCT 57.149 45.000 0.00 0.00 0.00 2.40
6634 7050 2.422597 TGACGCAGGGTTACAATTCTG 58.577 47.619 0.00 0.00 0.00 3.02
6635 7051 2.037902 TGACGCAGGGTTACAATTCTGA 59.962 45.455 0.00 0.00 0.00 3.27
6636 7052 3.270877 GACGCAGGGTTACAATTCTGAT 58.729 45.455 0.00 0.00 0.00 2.90
6637 7053 3.686016 ACGCAGGGTTACAATTCTGATT 58.314 40.909 0.00 0.00 0.00 2.57
6638 7054 4.079253 ACGCAGGGTTACAATTCTGATTT 58.921 39.130 0.00 0.00 0.00 2.17
6639 7055 4.522789 ACGCAGGGTTACAATTCTGATTTT 59.477 37.500 0.00 0.00 0.00 1.82
6640 7056 5.010617 ACGCAGGGTTACAATTCTGATTTTT 59.989 36.000 0.00 0.00 0.00 1.94
6662 7078 6.811253 TTTTTCGTTTAGCATGGATAGTGT 57.189 33.333 0.00 0.00 0.00 3.55
6663 7079 6.417191 TTTTCGTTTAGCATGGATAGTGTC 57.583 37.500 0.00 0.00 0.00 3.67
6664 7080 5.339008 TTCGTTTAGCATGGATAGTGTCT 57.661 39.130 0.00 0.00 0.00 3.41
6665 7081 4.933330 TCGTTTAGCATGGATAGTGTCTC 58.067 43.478 0.00 0.00 0.00 3.36
6666 7082 4.051922 CGTTTAGCATGGATAGTGTCTCC 58.948 47.826 0.00 0.00 0.00 3.71
6667 7083 4.381411 GTTTAGCATGGATAGTGTCTCCC 58.619 47.826 0.00 0.00 31.32 4.30
6668 7084 1.043816 AGCATGGATAGTGTCTCCCG 58.956 55.000 0.00 0.00 31.32 5.14
6669 7085 1.040646 GCATGGATAGTGTCTCCCGA 58.959 55.000 0.00 0.00 31.32 5.14
6670 7086 1.000283 GCATGGATAGTGTCTCCCGAG 60.000 57.143 0.00 0.00 31.32 4.63
6671 7087 2.311463 CATGGATAGTGTCTCCCGAGT 58.689 52.381 0.00 0.00 31.32 4.18
6672 7088 3.487372 CATGGATAGTGTCTCCCGAGTA 58.513 50.000 0.00 0.00 31.32 2.59
6673 7089 3.878237 TGGATAGTGTCTCCCGAGTAT 57.122 47.619 0.00 0.00 31.32 2.12
6674 7090 4.180377 TGGATAGTGTCTCCCGAGTATT 57.820 45.455 0.00 0.00 31.32 1.89
6675 7091 3.889538 TGGATAGTGTCTCCCGAGTATTG 59.110 47.826 0.00 0.00 31.32 1.90
6676 7092 3.256136 GGATAGTGTCTCCCGAGTATTGG 59.744 52.174 0.00 0.00 40.35 3.16
6686 7102 3.469008 CCGAGTATTGGGTATTGCTCA 57.531 47.619 0.00 0.00 35.34 4.26
6687 7103 4.008074 CCGAGTATTGGGTATTGCTCAT 57.992 45.455 0.00 0.00 35.34 2.90
6688 7104 3.748048 CCGAGTATTGGGTATTGCTCATG 59.252 47.826 0.00 0.00 35.34 3.07
6689 7105 4.503123 CCGAGTATTGGGTATTGCTCATGA 60.503 45.833 0.00 0.00 35.34 3.07
6690 7106 4.449068 CGAGTATTGGGTATTGCTCATGAC 59.551 45.833 0.00 0.00 0.00 3.06
6691 7107 4.380531 AGTATTGGGTATTGCTCATGACG 58.619 43.478 0.00 0.00 0.00 4.35
6692 7108 3.558931 ATTGGGTATTGCTCATGACGA 57.441 42.857 0.00 0.00 0.00 4.20
6693 7109 3.558931 TTGGGTATTGCTCATGACGAT 57.441 42.857 0.00 0.00 0.00 3.73
6694 7110 3.111853 TGGGTATTGCTCATGACGATC 57.888 47.619 0.00 0.00 0.00 3.69
6695 7111 2.433970 TGGGTATTGCTCATGACGATCA 59.566 45.455 0.00 0.00 0.00 2.92
6696 7112 3.062763 GGGTATTGCTCATGACGATCAG 58.937 50.000 0.00 0.00 0.00 2.90
6697 7113 3.493350 GGGTATTGCTCATGACGATCAGT 60.493 47.826 0.00 0.00 0.00 3.41
6698 7114 4.262036 GGGTATTGCTCATGACGATCAGTA 60.262 45.833 0.00 0.00 0.00 2.74
6699 7115 5.289595 GGTATTGCTCATGACGATCAGTAA 58.710 41.667 0.00 0.00 0.00 2.24
6700 7116 5.403766 GGTATTGCTCATGACGATCAGTAAG 59.596 44.000 0.00 0.00 0.00 2.34
6701 7117 4.718940 TTGCTCATGACGATCAGTAAGA 57.281 40.909 0.00 0.00 0.00 2.10
6702 7118 4.926140 TGCTCATGACGATCAGTAAGAT 57.074 40.909 0.00 0.00 40.48 2.40
6711 7127 3.019933 GATCAGTAAGATCCCACTCGC 57.980 52.381 0.00 0.00 46.10 5.03
6712 7128 2.145397 TCAGTAAGATCCCACTCGCT 57.855 50.000 0.00 0.00 0.00 4.93
6713 7129 3.292492 TCAGTAAGATCCCACTCGCTA 57.708 47.619 0.00 0.00 0.00 4.26
6714 7130 3.628008 TCAGTAAGATCCCACTCGCTAA 58.372 45.455 0.00 0.00 0.00 3.09
6715 7131 3.380637 TCAGTAAGATCCCACTCGCTAAC 59.619 47.826 0.00 0.00 0.00 2.34
6716 7132 3.130516 CAGTAAGATCCCACTCGCTAACA 59.869 47.826 0.00 0.00 0.00 2.41
6717 7133 2.969628 AAGATCCCACTCGCTAACAG 57.030 50.000 0.00 0.00 0.00 3.16
6718 7134 0.461961 AGATCCCACTCGCTAACAGC 59.538 55.000 0.00 0.00 38.02 4.40
6719 7135 0.175760 GATCCCACTCGCTAACAGCA 59.824 55.000 0.00 0.00 42.58 4.41
6720 7136 0.613260 ATCCCACTCGCTAACAGCAA 59.387 50.000 0.00 0.00 42.58 3.91
6721 7137 0.613260 TCCCACTCGCTAACAGCAAT 59.387 50.000 0.00 0.00 42.58 3.56
6722 7138 1.009829 CCCACTCGCTAACAGCAATC 58.990 55.000 0.00 0.00 42.58 2.67
6723 7139 1.009829 CCACTCGCTAACAGCAATCC 58.990 55.000 0.00 0.00 42.58 3.01
6724 7140 1.009829 CACTCGCTAACAGCAATCCC 58.990 55.000 0.00 0.00 42.58 3.85
6725 7141 0.613260 ACTCGCTAACAGCAATCCCA 59.387 50.000 0.00 0.00 42.58 4.37
6726 7142 1.210478 ACTCGCTAACAGCAATCCCAT 59.790 47.619 0.00 0.00 42.58 4.00
6727 7143 1.600957 CTCGCTAACAGCAATCCCATG 59.399 52.381 0.00 0.00 42.58 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 7.180408 ACTTGGTAGTATATGGTCACTGAAAGT 59.820 37.037 0.00 0.00 39.98 2.66
17 18 7.556844 ACTTGGTAGTATATGGTCACTGAAAG 58.443 38.462 0.00 0.00 33.84 2.62
19 20 7.327975 CAACTTGGTAGTATATGGTCACTGAA 58.672 38.462 0.00 0.00 33.17 3.02
20 21 6.629515 GCAACTTGGTAGTATATGGTCACTGA 60.630 42.308 0.00 0.00 33.17 3.41
21 22 5.523916 GCAACTTGGTAGTATATGGTCACTG 59.476 44.000 0.00 0.00 33.17 3.66
22 23 5.188948 TGCAACTTGGTAGTATATGGTCACT 59.811 40.000 0.00 0.00 33.17 3.41
23 24 5.424757 TGCAACTTGGTAGTATATGGTCAC 58.575 41.667 0.00 0.00 33.17 3.67
24 25 5.685520 TGCAACTTGGTAGTATATGGTCA 57.314 39.130 0.00 0.00 33.17 4.02
25 26 5.007724 GCTTGCAACTTGGTAGTATATGGTC 59.992 44.000 0.00 0.00 33.17 4.02
26 27 4.881850 GCTTGCAACTTGGTAGTATATGGT 59.118 41.667 0.00 0.00 33.17 3.55
27 28 4.275936 GGCTTGCAACTTGGTAGTATATGG 59.724 45.833 0.00 0.00 33.17 2.74
28 29 5.126067 AGGCTTGCAACTTGGTAGTATATG 58.874 41.667 0.00 0.00 33.17 1.78
29 30 5.373812 AGGCTTGCAACTTGGTAGTATAT 57.626 39.130 0.00 0.00 33.17 0.86
30 31 4.837093 AGGCTTGCAACTTGGTAGTATA 57.163 40.909 0.00 0.00 33.17 1.47
31 32 3.721087 AGGCTTGCAACTTGGTAGTAT 57.279 42.857 0.00 0.00 33.17 2.12
32 33 4.837093 ATAGGCTTGCAACTTGGTAGTA 57.163 40.909 0.00 0.00 33.17 1.82
33 34 3.721087 ATAGGCTTGCAACTTGGTAGT 57.279 42.857 0.00 0.00 35.68 2.73
34 35 3.129287 CCAATAGGCTTGCAACTTGGTAG 59.871 47.826 0.00 0.00 0.00 3.18
35 36 3.088532 CCAATAGGCTTGCAACTTGGTA 58.911 45.455 0.00 0.00 0.00 3.25
36 37 1.895131 CCAATAGGCTTGCAACTTGGT 59.105 47.619 0.00 0.00 0.00 3.67
37 38 1.205417 CCCAATAGGCTTGCAACTTGG 59.795 52.381 0.00 4.24 34.31 3.61
38 39 1.895131 ACCCAATAGGCTTGCAACTTG 59.105 47.619 0.00 0.00 40.58 3.16
39 40 2.309136 ACCCAATAGGCTTGCAACTT 57.691 45.000 0.00 0.00 40.58 2.66
40 41 2.309136 AACCCAATAGGCTTGCAACT 57.691 45.000 0.00 0.00 40.58 3.16
41 42 2.298729 TGAAACCCAATAGGCTTGCAAC 59.701 45.455 0.00 0.00 40.58 4.17
42 43 2.603021 TGAAACCCAATAGGCTTGCAA 58.397 42.857 0.00 0.00 40.58 4.08
43 44 2.300956 TGAAACCCAATAGGCTTGCA 57.699 45.000 0.00 0.00 40.58 4.08
44 45 2.562738 ACTTGAAACCCAATAGGCTTGC 59.437 45.455 0.00 0.00 40.58 4.01
45 46 3.573967 ACACTTGAAACCCAATAGGCTTG 59.426 43.478 0.00 0.00 40.58 4.01
46 47 3.844640 ACACTTGAAACCCAATAGGCTT 58.155 40.909 0.00 0.00 40.58 4.35
47 48 3.525800 ACACTTGAAACCCAATAGGCT 57.474 42.857 0.00 0.00 40.58 4.58
48 49 5.715434 TTTACACTTGAAACCCAATAGGC 57.285 39.130 0.00 0.00 40.58 3.93
74 75 2.232208 GCATGGCTTCCTGCTACTTTTT 59.768 45.455 0.00 0.00 42.39 1.94
75 76 1.821136 GCATGGCTTCCTGCTACTTTT 59.179 47.619 0.00 0.00 42.39 2.27
76 77 1.272092 TGCATGGCTTCCTGCTACTTT 60.272 47.619 0.00 0.00 42.39 2.66
77 78 0.329261 TGCATGGCTTCCTGCTACTT 59.671 50.000 0.00 0.00 42.39 2.24
78 79 0.107312 CTGCATGGCTTCCTGCTACT 60.107 55.000 0.00 0.00 42.39 2.57
79 80 0.107508 TCTGCATGGCTTCCTGCTAC 60.108 55.000 0.00 0.00 42.39 3.58
80 81 0.841961 ATCTGCATGGCTTCCTGCTA 59.158 50.000 0.00 0.00 42.39 3.49
81 82 0.752009 CATCTGCATGGCTTCCTGCT 60.752 55.000 0.00 0.00 42.39 4.24
82 83 1.734137 CATCTGCATGGCTTCCTGC 59.266 57.895 0.00 0.00 41.94 4.85
83 84 1.734137 GCATCTGCATGGCTTCCTG 59.266 57.895 0.00 0.00 41.59 3.86
84 85 4.254721 GCATCTGCATGGCTTCCT 57.745 55.556 0.00 0.00 41.59 3.36
141 142 2.496817 CGGCTGCTCTCCCTGTAC 59.503 66.667 0.00 0.00 0.00 2.90
142 143 3.461773 GCGGCTGCTCTCCCTGTA 61.462 66.667 11.21 0.00 38.39 2.74
163 164 2.823829 GATTGGGACATGTCGCGGC 61.824 63.158 30.56 20.79 44.39 6.53
164 165 2.525248 CGATTGGGACATGTCGCGG 61.525 63.158 30.56 18.94 44.39 6.46
165 166 2.525248 CCGATTGGGACATGTCGCG 61.525 63.158 30.56 21.27 42.63 5.87
355 356 1.687996 GGGAGAGAGGAGAGGACAAGG 60.688 61.905 0.00 0.00 0.00 3.61
431 432 0.252881 ATCTGCTGTGAGGGAAGGGA 60.253 55.000 0.00 0.00 0.00 4.20
434 435 1.829849 TCTCATCTGCTGTGAGGGAAG 59.170 52.381 16.91 0.00 42.58 3.46
484 500 1.083015 GTTTTGTCACGCGTGCGAT 60.083 52.632 33.63 0.00 42.83 4.58
576 593 0.804544 TTATTTGGTCTCGCCGCTCG 60.805 55.000 0.00 0.00 41.21 5.03
577 594 1.365699 TTTATTTGGTCTCGCCGCTC 58.634 50.000 0.00 0.00 41.21 5.03
633 651 8.514330 AAAAGAGGGGGAAATGTTTTTAAAAC 57.486 30.769 13.06 13.06 0.00 2.43
819 838 1.144057 CGTAGATGACTGGTGGGGC 59.856 63.158 0.00 0.00 0.00 5.80
1202 1253 2.771943 AGGGAAATCTACATCAGGCGAA 59.228 45.455 0.00 0.00 0.00 4.70
1450 1505 2.922950 CGCACAGCAAACCTGGCAT 61.923 57.895 0.00 0.00 46.14 4.40
1453 1508 3.673484 CCCGCACAGCAAACCTGG 61.673 66.667 0.00 0.00 46.14 4.45
1503 1558 1.577736 CACCTCCTTCATCTCCACCT 58.422 55.000 0.00 0.00 0.00 4.00
2608 2759 6.279123 CAACTATGGATATCATCAGATCGGG 58.721 44.000 4.83 0.00 37.30 5.14
2755 3011 7.843490 TTTTGCATGCTAGTAGTACCTTAAG 57.157 36.000 20.33 0.00 0.00 1.85
2822 3078 9.020731 GGTTCGGGATCATTATTATTACCAATT 57.979 33.333 0.00 0.00 0.00 2.32
3176 3444 6.879993 TGGTGGCGTACTAATTCAAGAAATTA 59.120 34.615 0.00 0.00 38.53 1.40
3189 3457 1.404986 GCAACTGATGGTGGCGTACTA 60.405 52.381 0.00 0.00 34.91 1.82
3204 3472 4.098349 TCAAGCTGTGAAATTTGAGCAACT 59.902 37.500 13.28 1.54 33.67 3.16
3216 3484 2.143122 GACCGAACATCAAGCTGTGAA 58.857 47.619 0.00 0.00 40.50 3.18
3232 3500 1.468520 CACATTGGGTGCTAAAGACCG 59.531 52.381 0.00 0.00 41.36 4.79
3249 3517 0.106268 TGCCCTTTGGAAGCTTCACA 60.106 50.000 27.02 18.92 0.00 3.58
3289 3557 6.752351 TGCTAAACGATTCTGCTTCTAGTTAG 59.248 38.462 0.00 0.00 0.00 2.34
3358 3626 2.174639 TGCCCTATCCCAGGTTAATGTG 59.825 50.000 0.00 0.00 43.80 3.21
3415 3684 4.259451 GCACGTAAACGATTCTGCTTCTAG 60.259 45.833 9.86 0.00 43.02 2.43
3422 3691 4.383774 TTCTTGCACGTAAACGATTCTG 57.616 40.909 9.86 0.00 43.02 3.02
3423 3692 4.929808 AGATTCTTGCACGTAAACGATTCT 59.070 37.500 9.86 0.00 43.02 2.40
3424 3693 5.204673 AGATTCTTGCACGTAAACGATTC 57.795 39.130 9.86 0.00 43.02 2.52
3425 3694 5.636121 TGTAGATTCTTGCACGTAAACGATT 59.364 36.000 9.86 0.00 43.02 3.34
3427 3696 4.548494 TGTAGATTCTTGCACGTAAACGA 58.452 39.130 9.86 0.00 43.02 3.85
3428 3697 4.896562 TGTAGATTCTTGCACGTAAACG 57.103 40.909 0.04 0.04 46.33 3.60
3433 3702 3.045601 AGCTTGTAGATTCTTGCACGT 57.954 42.857 0.00 0.00 0.00 4.49
3434 3703 3.926527 TGTAGCTTGTAGATTCTTGCACG 59.073 43.478 0.00 0.00 0.00 5.34
3517 3787 4.202441 TCCTATTTCAATTCTCTGCTGCC 58.798 43.478 0.00 0.00 0.00 4.85
3533 3803 4.922206 TGTTGGCAATGAAGACTCCTATT 58.078 39.130 1.92 0.00 0.00 1.73
3536 3806 2.787994 CTGTTGGCAATGAAGACTCCT 58.212 47.619 1.92 0.00 0.00 3.69
3567 3837 3.242518 GCTTTGAAACTAACGAATGCCC 58.757 45.455 0.00 0.00 0.00 5.36
3886 4163 1.605710 CAAGGTGCAGACAGAAACCTG 59.394 52.381 0.00 0.00 42.25 4.00
3900 4177 2.086869 CAGCATCTGTTACCCAAGGTG 58.913 52.381 0.00 0.00 36.19 4.00
3950 4227 8.994429 ATACATAGAGCTAGCATGTTATGTTC 57.006 34.615 24.93 11.05 34.58 3.18
4036 4313 5.343249 ACGTAGGTGGATAACATAAACGTC 58.657 41.667 0.00 0.00 38.21 4.34
4529 4812 2.590007 GCTCCCTGTATGCCTGCG 60.590 66.667 0.00 0.00 0.00 5.18
4796 5079 3.636764 TCATCTGCTGCTCCGTAAGAATA 59.363 43.478 0.00 0.00 43.02 1.75
4805 5088 2.008329 CTTGAAGTCATCTGCTGCTCC 58.992 52.381 0.00 0.00 0.00 4.70
4838 5121 0.413832 TAGCCCCAGAGGAGAGTGTT 59.586 55.000 0.00 0.00 38.24 3.32
4902 5185 1.691976 TGAACCAGAACCATCAGACGT 59.308 47.619 0.00 0.00 0.00 4.34
4946 5229 1.372087 CGGAAGCCTCATGACCTTGC 61.372 60.000 8.25 9.69 0.00 4.01
4949 5232 1.617947 GGTCGGAAGCCTCATGACCT 61.618 60.000 15.27 0.00 41.79 3.85
4964 5247 2.182030 GCTTCCAGTCCGAGGTCG 59.818 66.667 0.00 0.00 39.44 4.79
4970 5253 4.020617 TGCCCAGCTTCCAGTCCG 62.021 66.667 0.00 0.00 0.00 4.79
5048 5331 4.377021 GGCCATACAACTCGTCATATGAA 58.623 43.478 7.07 0.00 0.00 2.57
5191 5474 7.521509 ACGAGTTAAAGAATACTGTGCATAC 57.478 36.000 0.00 0.00 0.00 2.39
5218 5501 7.517614 AGATGAAGAAGAAGATACTATCGCA 57.482 36.000 0.00 0.00 0.00 5.10
5302 5585 1.872952 CGTGCCACTTTCATGAAGTCA 59.127 47.619 8.41 2.62 45.40 3.41
5341 5624 4.410400 AGCCCTCCCTTTTCGCCG 62.410 66.667 0.00 0.00 0.00 6.46
5487 5814 1.002142 GACAGCACGGGTAAACAAACC 60.002 52.381 0.00 0.00 38.94 3.27
5523 5850 7.400599 TCCACAAGATTGTAGTACTAACGAT 57.599 36.000 3.61 4.77 39.91 3.73
5589 5921 1.463034 CGATCAACAGCGCTGAACAAG 60.463 52.381 42.03 24.38 0.00 3.16
5653 5986 2.476997 GTCCAAGAGTTCGTTGAGAAGC 59.523 50.000 0.00 0.00 39.95 3.86
5654 5987 2.726760 CGTCCAAGAGTTCGTTGAGAAG 59.273 50.000 0.00 0.00 39.95 2.85
5655 5988 2.545113 CCGTCCAAGAGTTCGTTGAGAA 60.545 50.000 0.00 0.00 36.31 2.87
5656 5989 1.000607 CCGTCCAAGAGTTCGTTGAGA 60.001 52.381 0.00 0.00 0.00 3.27
5657 5990 1.269621 ACCGTCCAAGAGTTCGTTGAG 60.270 52.381 0.00 0.00 0.00 3.02
5677 6016 8.723942 TTAACTTTATTCCAAGCAAAGCAAAA 57.276 26.923 0.00 0.00 33.50 2.44
5699 6038 5.952947 TCCAAAGACCCAACTGAAAACTTAA 59.047 36.000 0.00 0.00 0.00 1.85
5700 6039 5.511363 TCCAAAGACCCAACTGAAAACTTA 58.489 37.500 0.00 0.00 0.00 2.24
5701 6040 4.349365 TCCAAAGACCCAACTGAAAACTT 58.651 39.130 0.00 0.00 0.00 2.66
5702 6041 3.976015 TCCAAAGACCCAACTGAAAACT 58.024 40.909 0.00 0.00 0.00 2.66
5703 6042 4.729227 TTCCAAAGACCCAACTGAAAAC 57.271 40.909 0.00 0.00 0.00 2.43
5704 6043 5.948742 ATTTCCAAAGACCCAACTGAAAA 57.051 34.783 0.00 0.00 0.00 2.29
5763 6102 6.349944 CCAAGAAATTCTCATCAAACCCTCAG 60.350 42.308 0.00 0.00 0.00 3.35
5824 6182 6.096705 ACAATCCAGAAAAGACACAACAATGA 59.903 34.615 0.00 0.00 0.00 2.57
5834 6192 6.136541 AGAACACAACAATCCAGAAAAGAC 57.863 37.500 0.00 0.00 0.00 3.01
5835 6193 6.773976 AAGAACACAACAATCCAGAAAAGA 57.226 33.333 0.00 0.00 0.00 2.52
5838 6196 6.154363 AGGAAAAGAACACAACAATCCAGAAA 59.846 34.615 0.00 0.00 0.00 2.52
5841 6199 5.284079 CAGGAAAAGAACACAACAATCCAG 58.716 41.667 0.00 0.00 0.00 3.86
5844 6202 5.514274 TCCAGGAAAAGAACACAACAATC 57.486 39.130 0.00 0.00 0.00 2.67
5845 6203 5.930837 TTCCAGGAAAAGAACACAACAAT 57.069 34.783 0.00 0.00 0.00 2.71
5868 6226 1.003718 CCGGGAAGACCTTTTCGCT 60.004 57.895 0.00 0.00 37.73 4.93
5885 6243 1.666888 CGCAAGTTGTTCATCAAGCCC 60.667 52.381 4.48 0.00 36.66 5.19
5923 6281 0.250989 CCCTAGCCTCCCTCTCGTAG 60.251 65.000 0.00 0.00 0.00 3.51
5924 6282 0.992431 ACCCTAGCCTCCCTCTCGTA 60.992 60.000 0.00 0.00 0.00 3.43
5925 6283 2.318172 ACCCTAGCCTCCCTCTCGT 61.318 63.158 0.00 0.00 0.00 4.18
5926 6284 1.830408 CACCCTAGCCTCCCTCTCG 60.830 68.421 0.00 0.00 0.00 4.04
5928 6286 2.699496 CCACCCTAGCCTCCCTCT 59.301 66.667 0.00 0.00 0.00 3.69
6008 6378 3.630312 GTCTCTCTCACGGAAAGATAGCT 59.370 47.826 0.00 0.00 0.00 3.32
6011 6381 4.966965 GTGTCTCTCTCACGGAAAGATA 57.033 45.455 0.00 0.00 0.00 1.98
6039 6415 8.110612 CCCAAAACAAAACAAAACAAAACAAAC 58.889 29.630 0.00 0.00 0.00 2.93
6040 6416 7.201522 GCCCAAAACAAAACAAAACAAAACAAA 60.202 29.630 0.00 0.00 0.00 2.83
6041 6417 6.255670 GCCCAAAACAAAACAAAACAAAACAA 59.744 30.769 0.00 0.00 0.00 2.83
6042 6418 5.748630 GCCCAAAACAAAACAAAACAAAACA 59.251 32.000 0.00 0.00 0.00 2.83
6043 6419 5.108217 CGCCCAAAACAAAACAAAACAAAAC 60.108 36.000 0.00 0.00 0.00 2.43
6135 6514 4.373116 TCGAGTGTGGCCGCCTTC 62.373 66.667 15.15 10.36 0.00 3.46
6140 6519 3.733960 TCGAGTCGAGTGTGGCCG 61.734 66.667 12.09 0.00 0.00 6.13
6147 6526 0.745128 CCAGCCTAGTCGAGTCGAGT 60.745 60.000 25.11 25.11 42.43 4.18
6170 6549 2.422235 CCAATTAATCACCCGGTAGGCA 60.422 50.000 0.00 0.00 40.58 4.75
6180 6559 3.731867 CGTTGCAGCCTCCAATTAATCAC 60.732 47.826 0.00 0.00 0.00 3.06
6183 6562 2.423538 GACGTTGCAGCCTCCAATTAAT 59.576 45.455 0.00 0.00 0.00 1.40
6255 6670 0.033208 TCATAACCGGTACCGTCCCT 60.033 55.000 31.24 15.32 37.81 4.20
6256 6671 1.000171 GATCATAACCGGTACCGTCCC 60.000 57.143 31.24 8.85 37.81 4.46
6257 6672 1.335324 CGATCATAACCGGTACCGTCC 60.335 57.143 31.24 10.60 37.81 4.79
6258 6673 1.603802 TCGATCATAACCGGTACCGTC 59.396 52.381 31.24 19.19 37.81 4.79
6259 6674 1.605710 CTCGATCATAACCGGTACCGT 59.394 52.381 31.24 17.52 37.81 4.83
6260 6675 1.068748 CCTCGATCATAACCGGTACCG 60.069 57.143 27.68 27.68 39.44 4.02
6261 6676 1.336609 GCCTCGATCATAACCGGTACC 60.337 57.143 8.00 0.16 0.00 3.34
6262 6677 1.336609 GGCCTCGATCATAACCGGTAC 60.337 57.143 8.00 0.00 0.00 3.34
6263 6678 0.963962 GGCCTCGATCATAACCGGTA 59.036 55.000 8.00 0.00 0.00 4.02
6378 6794 6.159988 CCTAGGAATTTATGGAACGCTAGAG 58.840 44.000 1.05 0.00 0.00 2.43
6383 6799 2.552743 GCCCTAGGAATTTATGGAACGC 59.447 50.000 11.48 0.00 0.00 4.84
6384 6800 3.146847 GGCCCTAGGAATTTATGGAACG 58.853 50.000 11.48 0.00 0.00 3.95
6385 6801 4.455070 AGGCCCTAGGAATTTATGGAAC 57.545 45.455 11.48 0.00 0.00 3.62
6386 6802 5.615261 ACATAGGCCCTAGGAATTTATGGAA 59.385 40.000 11.48 0.00 0.00 3.53
6387 6803 5.170198 ACATAGGCCCTAGGAATTTATGGA 58.830 41.667 11.48 0.00 0.00 3.41
6388 6804 5.520748 ACATAGGCCCTAGGAATTTATGG 57.479 43.478 11.48 0.00 0.00 2.74
6389 6805 6.443849 TCCTACATAGGCCCTAGGAATTTATG 59.556 42.308 11.48 14.06 43.31 1.90
6390 6806 6.581122 TCCTACATAGGCCCTAGGAATTTAT 58.419 40.000 11.48 0.00 43.31 1.40
6391 6807 5.984827 TCCTACATAGGCCCTAGGAATTTA 58.015 41.667 11.48 0.00 43.31 1.40
6392 6808 4.839589 TCCTACATAGGCCCTAGGAATTT 58.160 43.478 11.48 0.00 43.31 1.82
6393 6809 4.503685 TCCTACATAGGCCCTAGGAATT 57.496 45.455 11.48 0.00 43.31 2.17
6394 6810 4.202945 ACATCCTACATAGGCCCTAGGAAT 60.203 45.833 11.48 8.20 43.31 3.01
6395 6811 3.144125 ACATCCTACATAGGCCCTAGGAA 59.856 47.826 11.48 0.00 43.31 3.36
6398 6814 5.336531 CGTTTACATCCTACATAGGCCCTAG 60.337 48.000 0.00 0.00 43.31 3.02
6402 6818 3.660865 CCGTTTACATCCTACATAGGCC 58.339 50.000 0.00 0.00 43.31 5.19
6405 6821 3.973657 ACGCCGTTTACATCCTACATAG 58.026 45.455 0.00 0.00 0.00 2.23
6409 6825 3.000623 GCTAAACGCCGTTTACATCCTAC 59.999 47.826 17.76 0.00 37.01 3.18
6412 6828 2.447089 GCTAAACGCCGTTTACATCC 57.553 50.000 17.76 4.23 37.01 3.51
6465 6881 9.667107 CCTTCCTTGAACTGTTAGACAATAATA 57.333 33.333 0.00 0.00 0.00 0.98
6466 6882 8.164070 ACCTTCCTTGAACTGTTAGACAATAAT 58.836 33.333 0.00 0.00 0.00 1.28
6467 6883 7.514721 ACCTTCCTTGAACTGTTAGACAATAA 58.485 34.615 0.00 0.00 0.00 1.40
6468 6884 7.074653 ACCTTCCTTGAACTGTTAGACAATA 57.925 36.000 0.00 0.00 0.00 1.90
6469 6885 5.941788 ACCTTCCTTGAACTGTTAGACAAT 58.058 37.500 0.00 0.00 0.00 2.71
6470 6886 5.367945 ACCTTCCTTGAACTGTTAGACAA 57.632 39.130 0.00 0.00 0.00 3.18
6471 6887 5.367945 AACCTTCCTTGAACTGTTAGACA 57.632 39.130 0.00 0.00 0.00 3.41
6472 6888 6.542735 AGAAAACCTTCCTTGAACTGTTAGAC 59.457 38.462 0.00 0.00 31.28 2.59
6473 6889 6.659824 AGAAAACCTTCCTTGAACTGTTAGA 58.340 36.000 0.00 0.00 31.28 2.10
6474 6890 6.944234 AGAAAACCTTCCTTGAACTGTTAG 57.056 37.500 0.00 0.00 31.28 2.34
6475 6891 7.329588 GAAGAAAACCTTCCTTGAACTGTTA 57.670 36.000 0.00 0.00 44.27 2.41
6476 6892 6.208988 GAAGAAAACCTTCCTTGAACTGTT 57.791 37.500 0.00 0.00 44.27 3.16
6477 6893 5.836821 GAAGAAAACCTTCCTTGAACTGT 57.163 39.130 0.00 0.00 44.27 3.55
6488 6904 6.367374 TTGTTTTTCCAGGAAGAAAACCTT 57.633 33.333 20.15 0.00 43.53 3.50
6489 6905 6.013725 AGTTTGTTTTTCCAGGAAGAAAACCT 60.014 34.615 20.15 11.44 43.53 3.50
6490 6906 6.170506 AGTTTGTTTTTCCAGGAAGAAAACC 58.829 36.000 20.15 9.91 43.53 3.27
6491 6907 8.248253 TCTAGTTTGTTTTTCCAGGAAGAAAAC 58.752 33.333 17.63 17.63 43.53 2.43
6492 6908 8.356000 TCTAGTTTGTTTTTCCAGGAAGAAAA 57.644 30.769 6.73 0.00 42.48 2.29
6493 6909 7.614192 ACTCTAGTTTGTTTTTCCAGGAAGAAA 59.386 33.333 6.73 6.18 33.98 2.52
6494 6910 7.116736 ACTCTAGTTTGTTTTTCCAGGAAGAA 58.883 34.615 1.07 0.93 0.00 2.52
6495 6911 6.659824 ACTCTAGTTTGTTTTTCCAGGAAGA 58.340 36.000 1.07 0.00 0.00 2.87
6496 6912 6.944234 ACTCTAGTTTGTTTTTCCAGGAAG 57.056 37.500 1.07 0.00 0.00 3.46
6497 6913 7.386848 CGATACTCTAGTTTGTTTTTCCAGGAA 59.613 37.037 0.00 0.00 0.00 3.36
6498 6914 6.872020 CGATACTCTAGTTTGTTTTTCCAGGA 59.128 38.462 0.00 0.00 0.00 3.86
6499 6915 6.872020 TCGATACTCTAGTTTGTTTTTCCAGG 59.128 38.462 0.00 0.00 0.00 4.45
6500 6916 7.884816 TCGATACTCTAGTTTGTTTTTCCAG 57.115 36.000 0.00 0.00 0.00 3.86
6501 6917 7.274904 CGATCGATACTCTAGTTTGTTTTTCCA 59.725 37.037 10.26 0.00 0.00 3.53
6502 6918 7.487189 TCGATCGATACTCTAGTTTGTTTTTCC 59.513 37.037 15.15 0.00 0.00 3.13
6503 6919 8.390854 TCGATCGATACTCTAGTTTGTTTTTC 57.609 34.615 15.15 0.00 0.00 2.29
6504 6920 8.027771 ACTCGATCGATACTCTAGTTTGTTTTT 58.972 33.333 19.78 0.00 0.00 1.94
6505 6921 7.536855 ACTCGATCGATACTCTAGTTTGTTTT 58.463 34.615 19.78 0.00 0.00 2.43
6506 6922 7.086230 ACTCGATCGATACTCTAGTTTGTTT 57.914 36.000 19.78 0.00 0.00 2.83
6507 6923 6.680874 ACTCGATCGATACTCTAGTTTGTT 57.319 37.500 19.78 0.00 0.00 2.83
6508 6924 6.680874 AACTCGATCGATACTCTAGTTTGT 57.319 37.500 19.78 5.33 27.65 2.83
6509 6925 8.336806 AGTTAACTCGATCGATACTCTAGTTTG 58.663 37.037 19.78 4.64 32.72 2.93
6510 6926 8.436046 AGTTAACTCGATCGATACTCTAGTTT 57.564 34.615 19.78 0.05 32.72 2.66
6511 6927 9.539825 TTAGTTAACTCGATCGATACTCTAGTT 57.460 33.333 19.78 18.20 34.30 2.24
6512 6928 9.539825 TTTAGTTAACTCGATCGATACTCTAGT 57.460 33.333 19.78 8.21 0.00 2.57
6514 6930 9.755804 TCTTTAGTTAACTCGATCGATACTCTA 57.244 33.333 19.78 13.96 0.00 2.43
6515 6931 8.659925 TCTTTAGTTAACTCGATCGATACTCT 57.340 34.615 19.78 14.88 0.00 3.24
6516 6932 7.531534 GCTCTTTAGTTAACTCGATCGATACTC 59.468 40.741 19.78 8.57 0.00 2.59
6517 6933 7.354257 GCTCTTTAGTTAACTCGATCGATACT 58.646 38.462 19.78 19.48 0.00 2.12
6518 6934 6.578172 GGCTCTTTAGTTAACTCGATCGATAC 59.422 42.308 19.78 13.82 0.00 2.24
6519 6935 6.485984 AGGCTCTTTAGTTAACTCGATCGATA 59.514 38.462 19.78 6.28 0.00 2.92
6520 6936 5.299782 AGGCTCTTTAGTTAACTCGATCGAT 59.700 40.000 19.78 7.42 0.00 3.59
6521 6937 4.639310 AGGCTCTTTAGTTAACTCGATCGA 59.361 41.667 18.32 18.32 0.00 3.59
6522 6938 4.922719 AGGCTCTTTAGTTAACTCGATCG 58.077 43.478 12.39 9.36 0.00 3.69
6523 6939 5.005875 GCAAGGCTCTTTAGTTAACTCGATC 59.994 44.000 12.39 3.45 0.00 3.69
6524 6940 4.870991 GCAAGGCTCTTTAGTTAACTCGAT 59.129 41.667 12.39 0.00 0.00 3.59
6525 6941 4.243270 GCAAGGCTCTTTAGTTAACTCGA 58.757 43.478 12.39 6.69 0.00 4.04
6526 6942 3.371285 GGCAAGGCTCTTTAGTTAACTCG 59.629 47.826 12.39 2.33 0.00 4.18
6527 6943 3.371285 CGGCAAGGCTCTTTAGTTAACTC 59.629 47.826 12.39 0.00 0.00 3.01
6528 6944 3.335579 CGGCAAGGCTCTTTAGTTAACT 58.664 45.455 13.68 13.68 0.00 2.24
6529 6945 2.159558 GCGGCAAGGCTCTTTAGTTAAC 60.160 50.000 0.00 0.00 0.00 2.01
6530 6946 2.081462 GCGGCAAGGCTCTTTAGTTAA 58.919 47.619 0.00 0.00 0.00 2.01
6531 6947 1.278127 AGCGGCAAGGCTCTTTAGTTA 59.722 47.619 1.45 0.00 39.61 2.24
6532 6948 0.036875 AGCGGCAAGGCTCTTTAGTT 59.963 50.000 1.45 0.00 39.61 2.24
6533 6949 0.674895 CAGCGGCAAGGCTCTTTAGT 60.675 55.000 1.45 0.00 42.53 2.24
6534 6950 0.674895 ACAGCGGCAAGGCTCTTTAG 60.675 55.000 1.45 0.00 42.53 1.85
6535 6951 0.250727 AACAGCGGCAAGGCTCTTTA 60.251 50.000 1.45 0.00 42.53 1.85
6536 6952 1.109323 AAACAGCGGCAAGGCTCTTT 61.109 50.000 1.45 0.00 42.53 2.52
6537 6953 0.250727 TAAACAGCGGCAAGGCTCTT 60.251 50.000 1.45 0.00 42.53 2.85
6538 6954 0.035056 ATAAACAGCGGCAAGGCTCT 60.035 50.000 1.45 0.00 42.53 4.09
6539 6955 0.378610 GATAAACAGCGGCAAGGCTC 59.621 55.000 1.45 0.00 42.53 4.70
6540 6956 1.369091 CGATAAACAGCGGCAAGGCT 61.369 55.000 1.45 0.00 46.13 4.58
6541 6957 1.062525 CGATAAACAGCGGCAAGGC 59.937 57.895 1.45 0.00 0.00 4.35
6542 6958 1.062525 GCGATAAACAGCGGCAAGG 59.937 57.895 1.45 0.00 0.00 3.61
6543 6959 4.670606 GCGATAAACAGCGGCAAG 57.329 55.556 1.45 0.00 0.00 4.01
6549 6965 2.223157 TGTAAATGGCGCGATAAACAGC 60.223 45.455 12.10 0.00 0.00 4.40
6550 6966 3.666883 TGTAAATGGCGCGATAAACAG 57.333 42.857 12.10 0.00 0.00 3.16
6551 6967 3.002862 GGATGTAAATGGCGCGATAAACA 59.997 43.478 12.10 17.73 0.00 2.83
6552 6968 3.250040 AGGATGTAAATGGCGCGATAAAC 59.750 43.478 12.10 7.66 0.00 2.01
6553 6969 3.249799 CAGGATGTAAATGGCGCGATAAA 59.750 43.478 12.10 0.00 0.00 1.40
6554 6970 2.805671 CAGGATGTAAATGGCGCGATAA 59.194 45.455 12.10 0.00 0.00 1.75
6555 6971 2.412870 CAGGATGTAAATGGCGCGATA 58.587 47.619 12.10 0.00 0.00 2.92
6556 6972 1.229428 CAGGATGTAAATGGCGCGAT 58.771 50.000 12.10 0.00 0.00 4.58
6557 6973 0.813610 CCAGGATGTAAATGGCGCGA 60.814 55.000 12.10 0.00 0.00 5.87
6558 6974 1.648720 CCAGGATGTAAATGGCGCG 59.351 57.895 0.00 0.00 0.00 6.86
6559 6975 0.751643 ACCCAGGATGTAAATGGCGC 60.752 55.000 0.00 0.00 32.46 6.53
6560 6976 1.676006 GAACCCAGGATGTAAATGGCG 59.324 52.381 0.00 0.00 32.46 5.69
6561 6977 2.733956 TGAACCCAGGATGTAAATGGC 58.266 47.619 0.00 0.00 32.46 4.40
6562 6978 3.638160 CCATGAACCCAGGATGTAAATGG 59.362 47.826 0.00 0.00 0.00 3.16
6563 6979 4.280819 ACCATGAACCCAGGATGTAAATG 58.719 43.478 0.00 0.00 0.00 2.32
6564 6980 4.608170 ACCATGAACCCAGGATGTAAAT 57.392 40.909 0.00 0.00 0.00 1.40
6565 6981 4.396357 AACCATGAACCCAGGATGTAAA 57.604 40.909 0.00 0.00 0.00 2.01
6566 6982 4.538490 AGTAACCATGAACCCAGGATGTAA 59.462 41.667 0.00 0.00 0.00 2.41
6567 6983 4.108570 AGTAACCATGAACCCAGGATGTA 58.891 43.478 0.00 0.00 0.00 2.29
6568 6984 2.919602 AGTAACCATGAACCCAGGATGT 59.080 45.455 0.00 0.00 0.00 3.06
6569 6985 3.652057 AGTAACCATGAACCCAGGATG 57.348 47.619 0.00 0.00 0.00 3.51
6570 6986 4.675063 AAAGTAACCATGAACCCAGGAT 57.325 40.909 0.00 0.00 0.00 3.24
6571 6987 4.105697 AGAAAAGTAACCATGAACCCAGGA 59.894 41.667 0.00 0.00 0.00 3.86
6572 6988 4.218417 CAGAAAAGTAACCATGAACCCAGG 59.782 45.833 0.00 0.00 0.00 4.45
6573 6989 4.321230 GCAGAAAAGTAACCATGAACCCAG 60.321 45.833 0.00 0.00 0.00 4.45
6574 6990 3.572255 GCAGAAAAGTAACCATGAACCCA 59.428 43.478 0.00 0.00 0.00 4.51
6575 6991 3.056821 GGCAGAAAAGTAACCATGAACCC 60.057 47.826 0.00 0.00 0.00 4.11
6576 6992 3.826729 AGGCAGAAAAGTAACCATGAACC 59.173 43.478 0.00 0.00 0.00 3.62
6577 6993 4.762251 AGAGGCAGAAAAGTAACCATGAAC 59.238 41.667 0.00 0.00 0.00 3.18
6578 6994 4.985538 AGAGGCAGAAAAGTAACCATGAA 58.014 39.130 0.00 0.00 0.00 2.57
6579 6995 4.640771 AGAGGCAGAAAAGTAACCATGA 57.359 40.909 0.00 0.00 0.00 3.07
6580 6996 5.712152 AAAGAGGCAGAAAAGTAACCATG 57.288 39.130 0.00 0.00 0.00 3.66
6581 6997 6.731292 AAAAAGAGGCAGAAAAGTAACCAT 57.269 33.333 0.00 0.00 0.00 3.55
6601 7017 3.243704 CCCTGCGTCATGAAAAGGAAAAA 60.244 43.478 17.26 0.00 0.00 1.94
6602 7018 2.295909 CCCTGCGTCATGAAAAGGAAAA 59.704 45.455 17.26 0.00 0.00 2.29
6603 7019 1.885887 CCCTGCGTCATGAAAAGGAAA 59.114 47.619 17.26 0.00 0.00 3.13
6604 7020 1.202879 ACCCTGCGTCATGAAAAGGAA 60.203 47.619 17.26 0.00 0.00 3.36
6605 7021 0.400213 ACCCTGCGTCATGAAAAGGA 59.600 50.000 17.26 5.02 0.00 3.36
6606 7022 1.247567 AACCCTGCGTCATGAAAAGG 58.752 50.000 0.00 4.77 0.00 3.11
6607 7023 2.811431 TGTAACCCTGCGTCATGAAAAG 59.189 45.455 0.00 0.00 0.00 2.27
6608 7024 2.852449 TGTAACCCTGCGTCATGAAAA 58.148 42.857 0.00 0.00 0.00 2.29
6609 7025 2.552599 TGTAACCCTGCGTCATGAAA 57.447 45.000 0.00 0.00 0.00 2.69
6610 7026 2.552599 TTGTAACCCTGCGTCATGAA 57.447 45.000 0.00 0.00 0.00 2.57
6611 7027 2.779755 ATTGTAACCCTGCGTCATGA 57.220 45.000 0.00 0.00 0.00 3.07
6612 7028 3.009723 AGAATTGTAACCCTGCGTCATG 58.990 45.455 0.00 0.00 0.00 3.07
6613 7029 3.009723 CAGAATTGTAACCCTGCGTCAT 58.990 45.455 0.00 0.00 0.00 3.06
6614 7030 2.037902 TCAGAATTGTAACCCTGCGTCA 59.962 45.455 0.00 0.00 0.00 4.35
6615 7031 2.695359 TCAGAATTGTAACCCTGCGTC 58.305 47.619 0.00 0.00 0.00 5.19
6616 7032 2.851263 TCAGAATTGTAACCCTGCGT 57.149 45.000 0.00 0.00 0.00 5.24
6617 7033 4.701956 AAATCAGAATTGTAACCCTGCG 57.298 40.909 0.00 0.00 0.00 5.18
6639 7055 6.653320 AGACACTATCCATGCTAAACGAAAAA 59.347 34.615 0.00 0.00 0.00 1.94
6640 7056 6.170506 AGACACTATCCATGCTAAACGAAAA 58.829 36.000 0.00 0.00 0.00 2.29
6641 7057 5.730550 AGACACTATCCATGCTAAACGAAA 58.269 37.500 0.00 0.00 0.00 3.46
6642 7058 5.339008 AGACACTATCCATGCTAAACGAA 57.661 39.130 0.00 0.00 0.00 3.85
6643 7059 4.202121 GGAGACACTATCCATGCTAAACGA 60.202 45.833 0.00 0.00 36.79 3.85
6644 7060 4.051922 GGAGACACTATCCATGCTAAACG 58.948 47.826 0.00 0.00 36.79 3.60
6645 7061 4.381411 GGGAGACACTATCCATGCTAAAC 58.619 47.826 0.00 0.00 38.70 2.01
6646 7062 3.069586 CGGGAGACACTATCCATGCTAAA 59.930 47.826 0.00 0.00 38.70 1.85
6647 7063 2.628178 CGGGAGACACTATCCATGCTAA 59.372 50.000 0.00 0.00 38.70 3.09
6648 7064 2.158519 TCGGGAGACACTATCCATGCTA 60.159 50.000 0.00 0.00 38.70 3.49
6649 7065 1.043816 CGGGAGACACTATCCATGCT 58.956 55.000 0.00 0.00 38.70 3.79
6650 7066 1.000283 CTCGGGAGACACTATCCATGC 60.000 57.143 0.00 0.00 38.70 4.06
6651 7067 2.311463 ACTCGGGAGACACTATCCATG 58.689 52.381 2.08 0.00 38.70 3.66
6652 7068 2.757894 ACTCGGGAGACACTATCCAT 57.242 50.000 2.08 0.00 38.70 3.41
6653 7069 3.878237 ATACTCGGGAGACACTATCCA 57.122 47.619 2.08 0.00 38.70 3.41
6654 7070 3.256136 CCAATACTCGGGAGACACTATCC 59.744 52.174 2.08 0.00 35.99 2.59
6655 7071 4.506886 CCAATACTCGGGAGACACTATC 57.493 50.000 2.08 0.00 33.60 2.08
6666 7082 3.469008 TGAGCAATACCCAATACTCGG 57.531 47.619 0.00 0.00 0.00 4.63
6667 7083 4.449068 GTCATGAGCAATACCCAATACTCG 59.551 45.833 0.00 0.00 0.00 4.18
6668 7084 4.449068 CGTCATGAGCAATACCCAATACTC 59.551 45.833 0.00 0.00 0.00 2.59
6669 7085 4.100963 TCGTCATGAGCAATACCCAATACT 59.899 41.667 0.00 0.00 0.00 2.12
6670 7086 4.377021 TCGTCATGAGCAATACCCAATAC 58.623 43.478 0.00 0.00 0.00 1.89
6671 7087 4.681074 TCGTCATGAGCAATACCCAATA 57.319 40.909 0.00 0.00 0.00 1.90
6672 7088 3.558931 TCGTCATGAGCAATACCCAAT 57.441 42.857 0.00 0.00 0.00 3.16
6673 7089 3.118445 TGATCGTCATGAGCAATACCCAA 60.118 43.478 0.00 0.00 40.73 4.12
6674 7090 2.433970 TGATCGTCATGAGCAATACCCA 59.566 45.455 0.00 0.00 40.73 4.51
6675 7091 3.062763 CTGATCGTCATGAGCAATACCC 58.937 50.000 0.00 0.00 43.57 3.69
6676 7092 3.722147 ACTGATCGTCATGAGCAATACC 58.278 45.455 0.00 0.00 43.57 2.73
6677 7093 6.209361 TCTTACTGATCGTCATGAGCAATAC 58.791 40.000 0.00 0.00 43.57 1.89
6678 7094 6.391227 TCTTACTGATCGTCATGAGCAATA 57.609 37.500 0.00 0.00 43.57 1.90
6679 7095 5.268118 TCTTACTGATCGTCATGAGCAAT 57.732 39.130 0.00 0.00 43.57 3.56
6680 7096 4.718940 TCTTACTGATCGTCATGAGCAA 57.281 40.909 0.00 0.00 43.57 3.91
6681 7097 4.864633 GATCTTACTGATCGTCATGAGCA 58.135 43.478 0.00 0.00 41.68 4.26
6692 7108 2.672098 AGCGAGTGGGATCTTACTGAT 58.328 47.619 7.06 0.00 38.27 2.90
6693 7109 2.145397 AGCGAGTGGGATCTTACTGA 57.855 50.000 7.06 0.00 0.00 3.41
6694 7110 3.130516 TGTTAGCGAGTGGGATCTTACTG 59.869 47.826 7.06 2.63 0.00 2.74
6695 7111 3.362706 TGTTAGCGAGTGGGATCTTACT 58.637 45.455 2.68 2.68 0.00 2.24
6696 7112 3.707793 CTGTTAGCGAGTGGGATCTTAC 58.292 50.000 0.00 0.00 0.00 2.34
6697 7113 2.100916 GCTGTTAGCGAGTGGGATCTTA 59.899 50.000 0.00 0.00 0.00 2.10
6698 7114 1.134670 GCTGTTAGCGAGTGGGATCTT 60.135 52.381 0.00 0.00 0.00 2.40
6699 7115 0.461961 GCTGTTAGCGAGTGGGATCT 59.538 55.000 0.00 0.00 0.00 2.75
6700 7116 0.175760 TGCTGTTAGCGAGTGGGATC 59.824 55.000 0.00 0.00 46.26 3.36
6701 7117 0.613260 TTGCTGTTAGCGAGTGGGAT 59.387 50.000 0.00 0.00 46.26 3.85
6702 7118 0.613260 ATTGCTGTTAGCGAGTGGGA 59.387 50.000 0.00 0.00 46.26 4.37
6703 7119 1.009829 GATTGCTGTTAGCGAGTGGG 58.990 55.000 0.00 0.00 46.26 4.61
6704 7120 1.009829 GGATTGCTGTTAGCGAGTGG 58.990 55.000 0.00 0.00 46.26 4.00
6705 7121 1.009829 GGGATTGCTGTTAGCGAGTG 58.990 55.000 0.00 0.00 46.26 3.51
6706 7122 0.613260 TGGGATTGCTGTTAGCGAGT 59.387 50.000 0.00 0.00 46.26 4.18
6707 7123 1.600957 CATGGGATTGCTGTTAGCGAG 59.399 52.381 0.00 0.00 46.26 5.03
6708 7124 1.667236 CATGGGATTGCTGTTAGCGA 58.333 50.000 0.00 0.00 46.26 4.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.