Multiple sequence alignment - TraesCS1B01G173200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G173200 chr1B 100.000 5015 0 0 1 5015 309164996 309170010 0.000000e+00 9262.0
1 TraesCS1B01G173200 chr1D 90.306 2352 69 47 625 2902 216130981 216133247 0.000000e+00 2933.0
2 TraesCS1B01G173200 chr1D 92.317 1705 77 19 2919 4580 216133331 216135024 0.000000e+00 2374.0
3 TraesCS1B01G173200 chr1D 90.308 1104 36 22 595 1675 216125172 216126227 0.000000e+00 1380.0
4 TraesCS1B01G173200 chr1D 90.432 648 24 14 1673 2298 216130352 216130983 0.000000e+00 819.0
5 TraesCS1B01G173200 chr1D 92.809 445 26 6 4573 5015 216138310 216138750 1.520000e-179 640.0
6 TraesCS1B01G173200 chr1D 84.483 464 66 5 85 545 58544104 58543644 2.130000e-123 453.0
7 TraesCS1B01G173200 chr1A 87.726 1491 68 47 1188 2624 276802663 276804092 0.000000e+00 1633.0
8 TraesCS1B01G173200 chr1A 92.179 1138 62 10 3464 4577 276804976 276806110 0.000000e+00 1583.0
9 TraesCS1B01G173200 chr1A 91.710 579 22 13 577 1147 276802103 276802663 0.000000e+00 780.0
10 TraesCS1B01G173200 chr1A 90.380 447 29 10 4576 5012 276806203 276806645 4.350000e-160 575.0
11 TraesCS1B01G173200 chr1A 91.101 427 20 10 3053 3465 276804515 276804937 3.390000e-156 562.0
12 TraesCS1B01G173200 chr7B 95.833 480 18 2 67 544 631064521 631065000 0.000000e+00 774.0
13 TraesCS1B01G173200 chr7B 94.561 478 23 3 67 543 611973572 611974047 0.000000e+00 736.0
14 TraesCS1B01G173200 chr5B 95.417 480 16 3 67 544 10517307 10516832 0.000000e+00 760.0
15 TraesCS1B01G173200 chr5A 88.309 479 54 2 67 544 702630440 702630917 1.570000e-159 573.0
16 TraesCS1B01G173200 chr4D 86.458 480 62 3 67 544 503178631 503179109 1.600000e-144 523.0
17 TraesCS1B01G173200 chr3B 85.714 483 66 3 67 547 673136024 673136505 1.610000e-139 507.0
18 TraesCS1B01G173200 chr3D 84.255 470 65 9 82 546 592243538 592244003 2.750000e-122 449.0
19 TraesCS1B01G173200 chr3D 83.476 466 72 5 82 545 592356920 592357382 3.590000e-116 429.0
20 TraesCS1B01G173200 chr7D 85.542 83 7 4 4717 4794 523489159 523489077 1.160000e-11 82.4
21 TraesCS1B01G173200 chr2B 79.808 104 15 3 4719 4816 632907787 632907684 2.500000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G173200 chr1B 309164996 309170010 5014 False 9262.0 9262 100.0000 1 5015 1 chr1B.!!$F1 5014
1 TraesCS1B01G173200 chr1D 216130352 216138750 8398 False 1691.5 2933 91.4660 625 5015 4 chr1D.!!$F2 4390
2 TraesCS1B01G173200 chr1D 216125172 216126227 1055 False 1380.0 1380 90.3080 595 1675 1 chr1D.!!$F1 1080
3 TraesCS1B01G173200 chr1A 276802103 276806645 4542 False 1026.6 1633 90.6192 577 5012 5 chr1A.!!$F1 4435

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
321 322 0.032678 CGCTCCGCTTATGGACATCT 59.967 55.000 0.00 0.00 33.48 2.90 F
358 359 0.039618 GCCTCATGGGTGAAAGGGAA 59.960 55.000 0.00 0.00 37.43 3.97 F
573 574 0.116541 AGGATAATCCCCGTCCCGAT 59.883 55.000 0.00 0.00 37.19 4.18 F
1548 1589 0.322098 TTACTGGGTGGTGATTGGCG 60.322 55.000 0.00 0.00 0.00 5.69 F
2719 2870 0.036858 GTGGTTCAGAGGGCTCTCAC 60.037 60.000 17.82 5.06 42.34 3.51 F
2921 3154 1.274167 TGTCTCCGCAAAATACCGAGT 59.726 47.619 0.00 0.00 0.00 4.18 F
3744 4075 0.962489 ACTACAACTCGCTGCTGACT 59.038 50.000 0.00 0.00 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2207 2298 0.036671 ACGCCCTAACACTAACAGCC 60.037 55.000 0.00 0.0 0.00 4.85 R
2356 2453 5.949952 TGCTAGTACCTCTTGATCACAACTA 59.050 40.000 0.00 0.0 32.27 2.24 R
2530 2628 4.387598 CAGGCAGATTAGAAAGGAGATGG 58.612 47.826 0.00 0.0 0.00 3.51 R
2994 3234 0.099436 GCTATGCTGCAAAGGGAACG 59.901 55.000 6.36 0.0 0.00 3.95 R
3744 4075 0.953471 CCACGGCCTTGTCGATGAAA 60.953 55.000 8.63 0.0 33.65 2.69 R
3981 4320 1.035932 GCCCTATCTCCGCCGCTATA 61.036 60.000 0.00 0.0 0.00 1.31 R
4629 8284 1.684248 GCCTCCATGGTGCTCATCTTT 60.684 52.381 12.58 0.0 38.35 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.534085 TCTGTGAATTGGTCATATACGTTTC 57.466 36.000 0.00 0.00 38.90 2.78
28 29 8.471609 TCTGTGAATTGGTCATATACGTTTCTA 58.528 33.333 0.00 0.00 38.90 2.10
38 39 9.623350 GGTCATATACGTTTCTATTTCTACTCC 57.377 37.037 0.00 0.00 0.00 3.85
39 40 9.623350 GTCATATACGTTTCTATTTCTACTCCC 57.377 37.037 0.00 0.00 0.00 4.30
42 43 7.672122 ATACGTTTCTATTTCTACTCCCCTT 57.328 36.000 0.00 0.00 0.00 3.95
44 45 5.247792 ACGTTTCTATTTCTACTCCCCTTGT 59.752 40.000 0.00 0.00 0.00 3.16
45 46 6.438425 ACGTTTCTATTTCTACTCCCCTTGTA 59.562 38.462 0.00 0.00 0.00 2.41
46 47 7.125356 ACGTTTCTATTTCTACTCCCCTTGTAT 59.875 37.037 0.00 0.00 0.00 2.29
49 50 3.536956 TTTCTACTCCCCTTGTATGCG 57.463 47.619 0.00 0.00 0.00 4.73
50 51 2.447408 TCTACTCCCCTTGTATGCGA 57.553 50.000 0.00 0.00 0.00 5.10
55 56 0.397957 TCCCCTTGTATGCGAGCCTA 60.398 55.000 0.00 0.00 0.00 3.93
56 57 0.468226 CCCCTTGTATGCGAGCCTAA 59.532 55.000 0.00 0.00 0.00 2.69
57 58 1.134220 CCCCTTGTATGCGAGCCTAAA 60.134 52.381 0.00 0.00 0.00 1.85
58 59 1.940613 CCCTTGTATGCGAGCCTAAAC 59.059 52.381 0.00 0.00 0.00 2.01
61 62 1.917273 TGTATGCGAGCCTAAACGAC 58.083 50.000 0.00 0.00 0.00 4.34
62 63 1.206523 GTATGCGAGCCTAAACGACC 58.793 55.000 0.00 0.00 0.00 4.79
65 66 1.375013 GCGAGCCTAAACGACCCAA 60.375 57.895 0.00 0.00 0.00 4.12
67 68 0.739813 CGAGCCTAAACGACCCAAGG 60.740 60.000 0.00 0.00 0.00 3.61
68 69 0.611714 GAGCCTAAACGACCCAAGGA 59.388 55.000 0.00 0.00 0.00 3.36
69 70 0.613777 AGCCTAAACGACCCAAGGAG 59.386 55.000 0.00 0.00 0.00 3.69
70 71 1.025113 GCCTAAACGACCCAAGGAGC 61.025 60.000 0.00 0.00 0.00 4.70
72 73 0.037605 CTAAACGACCCAAGGAGCGT 60.038 55.000 0.00 0.00 38.36 5.07
74 75 0.464916 AAACGACCCAAGGAGCGTTT 60.465 50.000 18.88 18.88 44.60 3.60
75 76 0.883370 AACGACCCAAGGAGCGTTTC 60.883 55.000 11.35 0.00 41.30 2.78
76 77 1.301401 CGACCCAAGGAGCGTTTCA 60.301 57.895 0.00 0.00 0.00 2.69
78 79 1.087501 GACCCAAGGAGCGTTTCATC 58.912 55.000 0.00 0.00 0.00 2.92
80 81 0.391130 CCCAAGGAGCGTTTCATCGA 60.391 55.000 0.00 0.00 0.00 3.59
82 83 1.594862 CCAAGGAGCGTTTCATCGATC 59.405 52.381 0.00 0.00 43.95 3.69
85 86 1.751351 AGGAGCGTTTCATCGATCTGA 59.249 47.619 0.00 0.00 44.10 3.27
87 88 1.514811 GAGCGTTTCATCGATCTGACG 59.485 52.381 15.64 15.64 41.92 4.35
88 89 0.572590 GCGTTTCATCGATCTGACGG 59.427 55.000 19.32 0.06 0.00 4.79
89 90 1.200483 CGTTTCATCGATCTGACGGG 58.800 55.000 13.30 0.00 0.00 5.28
91 92 2.194271 GTTTCATCGATCTGACGGGTC 58.806 52.381 0.00 0.00 0.00 4.46
92 93 0.380733 TTCATCGATCTGACGGGTCG 59.619 55.000 10.83 10.83 36.75 4.79
93 94 1.008424 CATCGATCTGACGGGTCGG 60.008 63.158 16.69 1.11 36.14 4.79
94 95 2.846652 ATCGATCTGACGGGTCGGC 61.847 63.158 16.69 0.00 35.96 5.54
96 97 3.515286 GATCTGACGGGTCGGCGA 61.515 66.667 4.99 4.99 37.93 5.54
118 119 1.781429 CGCAGGAATGATTCTACGACG 59.219 52.381 5.03 0.00 0.00 5.12
119 120 2.794981 CGCAGGAATGATTCTACGACGT 60.795 50.000 5.52 5.52 0.00 4.34
120 121 3.187700 GCAGGAATGATTCTACGACGTT 58.812 45.455 5.50 0.00 0.00 3.99
121 122 3.617263 GCAGGAATGATTCTACGACGTTT 59.383 43.478 5.50 0.00 0.00 3.60
133 134 3.509388 GACGTTTCGATGGGAGTGT 57.491 52.632 0.00 0.00 0.00 3.55
134 135 1.792006 GACGTTTCGATGGGAGTGTT 58.208 50.000 0.00 0.00 0.00 3.32
135 136 2.950433 GACGTTTCGATGGGAGTGTTA 58.050 47.619 0.00 0.00 0.00 2.41
136 137 3.518590 GACGTTTCGATGGGAGTGTTAT 58.481 45.455 0.00 0.00 0.00 1.89
137 138 3.930848 GACGTTTCGATGGGAGTGTTATT 59.069 43.478 0.00 0.00 0.00 1.40
138 139 4.320870 ACGTTTCGATGGGAGTGTTATTT 58.679 39.130 0.00 0.00 0.00 1.40
140 141 5.239963 ACGTTTCGATGGGAGTGTTATTTTT 59.760 36.000 0.00 0.00 0.00 1.94
141 142 5.567534 CGTTTCGATGGGAGTGTTATTTTTG 59.432 40.000 0.00 0.00 0.00 2.44
142 143 4.695217 TCGATGGGAGTGTTATTTTTGC 57.305 40.909 0.00 0.00 0.00 3.68
143 144 4.075682 TCGATGGGAGTGTTATTTTTGCA 58.924 39.130 0.00 0.00 0.00 4.08
144 145 4.155826 TCGATGGGAGTGTTATTTTTGCAG 59.844 41.667 0.00 0.00 0.00 4.41
146 147 3.230134 TGGGAGTGTTATTTTTGCAGCT 58.770 40.909 0.00 0.00 0.00 4.24
147 148 3.640967 TGGGAGTGTTATTTTTGCAGCTT 59.359 39.130 0.00 0.00 0.00 3.74
148 149 4.830046 TGGGAGTGTTATTTTTGCAGCTTA 59.170 37.500 0.00 0.00 0.00 3.09
149 150 5.161358 GGGAGTGTTATTTTTGCAGCTTAC 58.839 41.667 0.00 0.00 0.00 2.34
150 151 5.278758 GGGAGTGTTATTTTTGCAGCTTACA 60.279 40.000 0.00 0.00 0.00 2.41
151 152 5.858581 GGAGTGTTATTTTTGCAGCTTACAG 59.141 40.000 0.00 0.00 0.00 2.74
152 153 6.293955 GGAGTGTTATTTTTGCAGCTTACAGA 60.294 38.462 0.00 0.00 0.00 3.41
153 154 7.219484 AGTGTTATTTTTGCAGCTTACAGAT 57.781 32.000 0.00 0.00 0.00 2.90
154 155 7.086376 AGTGTTATTTTTGCAGCTTACAGATG 58.914 34.615 0.00 0.00 34.14 2.90
164 165 5.752892 CAGCTTACAGATGCATCTTCAAT 57.247 39.130 26.70 14.38 34.22 2.57
165 166 6.132791 CAGCTTACAGATGCATCTTCAATT 57.867 37.500 26.70 10.93 34.22 2.32
166 167 5.971792 CAGCTTACAGATGCATCTTCAATTG 59.028 40.000 26.70 16.97 34.22 2.32
173 174 2.932498 TGCATCTTCAATTGCAACGAC 58.068 42.857 0.00 0.00 45.30 4.34
175 176 1.906966 CATCTTCAATTGCAACGACGC 59.093 47.619 0.00 0.00 0.00 5.19
176 177 1.225855 TCTTCAATTGCAACGACGCT 58.774 45.000 0.00 0.00 0.00 5.07
177 178 1.194547 TCTTCAATTGCAACGACGCTC 59.805 47.619 0.00 0.00 0.00 5.03
178 179 1.195448 CTTCAATTGCAACGACGCTCT 59.805 47.619 0.00 0.00 0.00 4.09
179 180 0.512518 TCAATTGCAACGACGCTCTG 59.487 50.000 0.00 0.00 0.00 3.35
180 181 0.453282 CAATTGCAACGACGCTCTGG 60.453 55.000 0.00 0.00 0.00 3.86
181 182 0.602638 AATTGCAACGACGCTCTGGA 60.603 50.000 0.00 0.00 0.00 3.86
182 183 1.016130 ATTGCAACGACGCTCTGGAG 61.016 55.000 0.00 0.00 0.00 3.86
183 184 2.811317 GCAACGACGCTCTGGAGG 60.811 66.667 0.00 0.00 0.00 4.30
185 186 2.992114 AACGACGCTCTGGAGGCT 60.992 61.111 0.00 0.00 0.00 4.58
186 187 3.288308 AACGACGCTCTGGAGGCTG 62.288 63.158 0.00 0.00 0.00 4.85
187 188 3.443925 CGACGCTCTGGAGGCTGA 61.444 66.667 0.00 0.00 0.00 4.26
188 189 2.493973 GACGCTCTGGAGGCTGAG 59.506 66.667 0.00 0.00 0.00 3.35
189 190 2.036414 ACGCTCTGGAGGCTGAGA 59.964 61.111 4.64 0.00 32.44 3.27
191 192 0.975040 ACGCTCTGGAGGCTGAGATT 60.975 55.000 4.64 0.00 32.44 2.40
192 193 0.249405 CGCTCTGGAGGCTGAGATTC 60.249 60.000 4.64 0.00 32.44 2.52
199 200 2.092049 TGGAGGCTGAGATTCATGCATT 60.092 45.455 0.00 0.00 0.00 3.56
200 201 3.136992 TGGAGGCTGAGATTCATGCATTA 59.863 43.478 0.00 0.00 0.00 1.90
201 202 4.139786 GGAGGCTGAGATTCATGCATTAA 58.860 43.478 0.00 0.00 0.00 1.40
203 204 5.335740 GGAGGCTGAGATTCATGCATTAATG 60.336 44.000 10.79 11.27 0.00 1.90
225 226 1.152694 GGCATGGCCTTGGCTATCA 60.153 57.895 30.94 1.65 46.69 2.15
226 227 0.756442 GGCATGGCCTTGGCTATCAA 60.756 55.000 30.94 0.00 46.69 2.57
227 228 0.386838 GCATGGCCTTGGCTATCAAC 59.613 55.000 19.47 0.00 0.00 3.18
229 230 1.406539 CATGGCCTTGGCTATCAACAC 59.593 52.381 10.81 0.00 0.00 3.32
230 231 0.698238 TGGCCTTGGCTATCAACACT 59.302 50.000 11.71 0.00 0.00 3.55
231 232 1.340017 TGGCCTTGGCTATCAACACTC 60.340 52.381 11.71 0.00 0.00 3.51
232 233 1.009829 GCCTTGGCTATCAACACTCG 58.990 55.000 4.11 0.00 0.00 4.18
233 234 1.656652 CCTTGGCTATCAACACTCGG 58.343 55.000 0.00 0.00 0.00 4.63
234 235 1.207089 CCTTGGCTATCAACACTCGGA 59.793 52.381 0.00 0.00 0.00 4.55
235 236 2.354704 CCTTGGCTATCAACACTCGGAA 60.355 50.000 0.00 0.00 0.00 4.30
236 237 2.672961 TGGCTATCAACACTCGGAAG 57.327 50.000 0.00 0.00 0.00 3.46
239 240 2.930682 GGCTATCAACACTCGGAAGAAC 59.069 50.000 0.00 0.00 41.32 3.01
240 241 2.930682 GCTATCAACACTCGGAAGAACC 59.069 50.000 0.00 0.00 41.32 3.62
250 251 3.527434 GGAAGAACCGGTGATCGTT 57.473 52.632 8.52 0.00 37.11 3.85
251 252 1.356938 GGAAGAACCGGTGATCGTTC 58.643 55.000 8.52 8.64 37.11 3.95
254 255 2.762535 AGAACCGGTGATCGTTCAAT 57.237 45.000 8.52 0.00 37.11 2.57
255 256 2.618053 AGAACCGGTGATCGTTCAATC 58.382 47.619 8.52 0.00 37.11 2.67
256 257 1.664151 GAACCGGTGATCGTTCAATCC 59.336 52.381 8.52 0.00 37.11 3.01
257 258 0.459585 ACCGGTGATCGTTCAATCCG 60.460 55.000 6.12 15.15 39.81 4.18
258 259 0.179121 CCGGTGATCGTTCAATCCGA 60.179 55.000 20.92 0.00 41.60 4.55
260 261 2.201732 CGGTGATCGTTCAATCCGATT 58.798 47.619 16.48 0.00 44.48 3.34
261 262 2.218759 CGGTGATCGTTCAATCCGATTC 59.781 50.000 16.48 0.00 44.48 2.52
262 263 2.544267 GGTGATCGTTCAATCCGATTCC 59.456 50.000 0.00 0.00 44.48 3.01
263 264 3.458189 GTGATCGTTCAATCCGATTCCT 58.542 45.455 0.00 0.00 44.48 3.36
264 265 3.491267 GTGATCGTTCAATCCGATTCCTC 59.509 47.826 0.00 0.00 44.48 3.71
265 266 3.384789 TGATCGTTCAATCCGATTCCTCT 59.615 43.478 0.00 0.00 44.48 3.69
266 267 3.165058 TCGTTCAATCCGATTCCTCTG 57.835 47.619 0.00 0.00 0.00 3.35
267 268 2.758423 TCGTTCAATCCGATTCCTCTGA 59.242 45.455 0.00 0.00 0.00 3.27
268 269 3.194755 TCGTTCAATCCGATTCCTCTGAA 59.805 43.478 0.00 0.00 34.33 3.02
269 270 3.553511 CGTTCAATCCGATTCCTCTGAAG 59.446 47.826 0.00 0.00 33.05 3.02
271 272 2.768527 TCAATCCGATTCCTCTGAAGCT 59.231 45.455 0.00 0.00 34.73 3.74
272 273 3.129871 CAATCCGATTCCTCTGAAGCTC 58.870 50.000 0.00 0.00 34.73 4.09
274 275 3.298686 TCCGATTCCTCTGAAGCTCTA 57.701 47.619 0.00 0.00 34.73 2.43
275 276 2.952978 TCCGATTCCTCTGAAGCTCTAC 59.047 50.000 0.00 0.00 34.73 2.59
276 277 2.287308 CCGATTCCTCTGAAGCTCTACG 60.287 54.545 0.00 0.00 34.73 3.51
277 278 2.356382 CGATTCCTCTGAAGCTCTACGT 59.644 50.000 0.00 0.00 34.73 3.57
278 279 3.181495 CGATTCCTCTGAAGCTCTACGTT 60.181 47.826 0.00 0.00 34.73 3.99
279 280 3.851976 TTCCTCTGAAGCTCTACGTTC 57.148 47.619 0.00 0.00 0.00 3.95
280 281 2.791655 TCCTCTGAAGCTCTACGTTCA 58.208 47.619 0.00 0.00 0.00 3.18
281 282 3.357203 TCCTCTGAAGCTCTACGTTCAT 58.643 45.455 0.00 0.00 32.33 2.57
285 286 4.486090 TCTGAAGCTCTACGTTCATTGAC 58.514 43.478 0.00 0.00 32.33 3.18
287 288 4.237724 TGAAGCTCTACGTTCATTGACAG 58.762 43.478 0.00 0.00 0.00 3.51
288 289 3.238108 AGCTCTACGTTCATTGACAGG 57.762 47.619 0.00 0.00 0.00 4.00
289 290 2.093973 AGCTCTACGTTCATTGACAGGG 60.094 50.000 0.00 0.00 0.00 4.45
292 293 2.232941 TCTACGTTCATTGACAGGGGAC 59.767 50.000 0.00 0.00 0.00 4.46
293 294 0.762418 ACGTTCATTGACAGGGGACA 59.238 50.000 0.00 0.00 0.00 4.02
294 295 1.270839 ACGTTCATTGACAGGGGACAG 60.271 52.381 0.00 0.00 0.00 3.51
295 296 1.270839 CGTTCATTGACAGGGGACAGT 60.271 52.381 0.00 0.00 0.00 3.55
300 301 2.930826 TTGACAGGGGACAGTCTTTC 57.069 50.000 0.00 0.00 46.17 2.62
305 306 3.069778 GGGACAGTCTTTCCCGCT 58.930 61.111 8.36 0.00 43.62 5.52
306 307 1.079057 GGGACAGTCTTTCCCGCTC 60.079 63.158 8.36 0.00 43.62 5.03
307 308 1.079057 GGACAGTCTTTCCCGCTCC 60.079 63.158 0.00 0.00 0.00 4.70
308 309 1.446272 GACAGTCTTTCCCGCTCCG 60.446 63.158 0.00 0.00 0.00 4.63
309 310 2.815647 CAGTCTTTCCCGCTCCGC 60.816 66.667 0.00 0.00 0.00 5.54
310 311 2.997897 AGTCTTTCCCGCTCCGCT 60.998 61.111 0.00 0.00 0.00 5.52
311 312 2.047179 GTCTTTCCCGCTCCGCTT 60.047 61.111 0.00 0.00 0.00 4.68
312 313 1.217244 GTCTTTCCCGCTCCGCTTA 59.783 57.895 0.00 0.00 0.00 3.09
313 314 0.179081 GTCTTTCCCGCTCCGCTTAT 60.179 55.000 0.00 0.00 0.00 1.73
314 315 0.179084 TCTTTCCCGCTCCGCTTATG 60.179 55.000 0.00 0.00 0.00 1.90
315 316 1.153249 TTTCCCGCTCCGCTTATGG 60.153 57.895 0.00 0.00 0.00 2.74
317 318 2.280186 CCCGCTCCGCTTATGGAC 60.280 66.667 0.00 0.00 33.48 4.02
320 321 0.946221 CCGCTCCGCTTATGGACATC 60.946 60.000 0.00 0.00 33.48 3.06
321 322 0.032678 CGCTCCGCTTATGGACATCT 59.967 55.000 0.00 0.00 33.48 2.90
322 323 1.269723 CGCTCCGCTTATGGACATCTA 59.730 52.381 0.00 0.00 33.48 1.98
323 324 2.669670 CGCTCCGCTTATGGACATCTAG 60.670 54.545 0.00 0.00 33.48 2.43
324 325 2.297597 GCTCCGCTTATGGACATCTAGT 59.702 50.000 0.00 0.00 33.48 2.57
325 326 3.243907 GCTCCGCTTATGGACATCTAGTT 60.244 47.826 0.00 0.00 33.48 2.24
327 328 2.802816 CCGCTTATGGACATCTAGTTGC 59.197 50.000 0.51 0.00 0.00 4.17
328 329 3.493350 CCGCTTATGGACATCTAGTTGCT 60.493 47.826 0.51 0.00 0.00 3.91
329 330 3.492383 CGCTTATGGACATCTAGTTGCTG 59.508 47.826 0.51 0.00 0.00 4.41
330 331 4.697514 GCTTATGGACATCTAGTTGCTGA 58.302 43.478 0.51 0.00 0.00 4.26
333 334 6.737720 TTATGGACATCTAGTTGCTGAGAT 57.262 37.500 0.51 0.00 32.48 2.75
334 335 4.662468 TGGACATCTAGTTGCTGAGATC 57.338 45.455 0.51 0.00 29.73 2.75
336 337 3.386078 GGACATCTAGTTGCTGAGATCCA 59.614 47.826 0.51 0.00 29.73 3.41
337 338 4.040217 GGACATCTAGTTGCTGAGATCCAT 59.960 45.833 0.51 0.00 29.73 3.41
338 339 5.212532 ACATCTAGTTGCTGAGATCCATC 57.787 43.478 0.51 0.00 29.73 3.51
339 340 3.998099 TCTAGTTGCTGAGATCCATCG 57.002 47.619 0.00 0.00 0.00 3.84
340 341 2.035193 TCTAGTTGCTGAGATCCATCGC 59.965 50.000 0.00 0.00 0.00 4.58
341 342 0.179062 AGTTGCTGAGATCCATCGCC 60.179 55.000 0.00 0.00 0.00 5.54
342 343 0.179062 GTTGCTGAGATCCATCGCCT 60.179 55.000 0.00 0.00 0.00 5.52
343 344 0.105593 TTGCTGAGATCCATCGCCTC 59.894 55.000 0.00 0.00 0.00 4.70
344 345 1.044790 TGCTGAGATCCATCGCCTCA 61.045 55.000 0.00 0.00 35.81 3.86
345 346 0.321021 GCTGAGATCCATCGCCTCAT 59.679 55.000 0.00 0.00 36.48 2.90
346 347 1.940294 GCTGAGATCCATCGCCTCATG 60.940 57.143 0.00 0.00 36.48 3.07
347 348 0.683412 TGAGATCCATCGCCTCATGG 59.317 55.000 0.00 0.00 44.45 3.66
350 351 0.604780 GATCCATCGCCTCATGGGTG 60.605 60.000 7.29 7.29 43.40 4.61
356 357 4.344237 GCCTCATGGGTGAAAGGG 57.656 61.111 0.00 0.00 37.43 3.95
357 358 1.691219 GCCTCATGGGTGAAAGGGA 59.309 57.895 0.00 0.00 37.43 4.20
358 359 0.039618 GCCTCATGGGTGAAAGGGAA 59.960 55.000 0.00 0.00 37.43 3.97
359 360 1.342374 GCCTCATGGGTGAAAGGGAAT 60.342 52.381 0.00 0.00 37.43 3.01
360 361 2.889756 GCCTCATGGGTGAAAGGGAATT 60.890 50.000 0.00 0.00 37.43 2.17
361 362 3.444029 CCTCATGGGTGAAAGGGAATTT 58.556 45.455 0.00 0.00 33.05 1.82
362 363 4.609301 CCTCATGGGTGAAAGGGAATTTA 58.391 43.478 0.00 0.00 33.05 1.40
364 365 5.662657 CCTCATGGGTGAAAGGGAATTTATT 59.337 40.000 0.00 0.00 33.05 1.40
367 368 9.289203 CTCATGGGTGAAAGGGAATTTATTCCG 62.289 44.444 13.80 0.00 44.35 4.30
382 383 7.941795 ATTTATTCCGTCGAAGATTAATCGT 57.058 32.000 9.78 6.71 40.67 3.73
383 384 6.742999 TTATTCCGTCGAAGATTAATCGTG 57.257 37.500 8.71 3.77 40.67 4.35
384 385 3.770263 TCCGTCGAAGATTAATCGTGT 57.230 42.857 8.71 0.00 40.67 4.49
385 386 4.100707 TCCGTCGAAGATTAATCGTGTT 57.899 40.909 8.71 0.00 40.67 3.32
386 387 4.100529 TCCGTCGAAGATTAATCGTGTTC 58.899 43.478 8.71 7.15 40.67 3.18
387 388 3.855379 CCGTCGAAGATTAATCGTGTTCA 59.145 43.478 8.71 0.00 40.67 3.18
388 389 4.027621 CCGTCGAAGATTAATCGTGTTCAG 60.028 45.833 8.71 5.42 40.67 3.02
389 390 4.791676 CGTCGAAGATTAATCGTGTTCAGA 59.208 41.667 8.71 7.27 40.67 3.27
390 391 5.285370 CGTCGAAGATTAATCGTGTTCAGAA 59.715 40.000 8.71 0.00 40.67 3.02
391 392 6.020599 CGTCGAAGATTAATCGTGTTCAGAAT 60.021 38.462 8.71 0.00 40.67 2.40
392 393 7.165318 CGTCGAAGATTAATCGTGTTCAGAATA 59.835 37.037 8.71 0.00 40.67 1.75
393 394 8.473016 GTCGAAGATTAATCGTGTTCAGAATAG 58.527 37.037 8.71 0.00 40.67 1.73
394 395 7.648112 TCGAAGATTAATCGTGTTCAGAATAGG 59.352 37.037 8.71 0.00 40.99 2.57
396 397 7.125792 AGATTAATCGTGTTCAGAATAGGGT 57.874 36.000 9.78 0.00 0.00 4.34
397 398 7.565680 AGATTAATCGTGTTCAGAATAGGGTT 58.434 34.615 9.78 3.89 0.00 4.11
399 400 2.695359 TCGTGTTCAGAATAGGGTTGC 58.305 47.619 0.36 0.00 0.00 4.17
400 401 2.037902 TCGTGTTCAGAATAGGGTTGCA 59.962 45.455 0.36 0.00 0.00 4.08
401 402 2.416547 CGTGTTCAGAATAGGGTTGCAG 59.583 50.000 0.00 0.00 0.00 4.41
404 405 4.333926 GTGTTCAGAATAGGGTTGCAGATC 59.666 45.833 0.00 0.00 0.00 2.75
406 407 2.103094 TCAGAATAGGGTTGCAGATCGG 59.897 50.000 0.00 0.00 0.00 4.18
410 411 1.971505 TAGGGTTGCAGATCGGCTGG 61.972 60.000 18.74 0.00 45.03 4.85
414 415 3.012859 TTGCAGATCGGCTGGCGTA 62.013 57.895 23.07 10.55 45.03 4.42
415 416 2.029666 GCAGATCGGCTGGCGTAT 59.970 61.111 23.07 14.72 45.03 3.06
416 417 1.595382 GCAGATCGGCTGGCGTATT 60.595 57.895 23.07 9.61 45.03 1.89
417 418 0.319555 GCAGATCGGCTGGCGTATTA 60.320 55.000 23.07 4.22 45.03 0.98
418 419 1.673033 GCAGATCGGCTGGCGTATTAT 60.673 52.381 23.07 9.35 45.03 1.28
419 420 2.416836 GCAGATCGGCTGGCGTATTATA 60.417 50.000 23.07 3.02 45.03 0.98
420 421 3.439293 CAGATCGGCTGGCGTATTATAG 58.561 50.000 23.07 4.88 41.07 1.31
421 422 3.090037 AGATCGGCTGGCGTATTATAGT 58.910 45.455 23.07 0.00 0.00 2.12
424 425 1.068748 CGGCTGGCGTATTATAGTCGT 60.069 52.381 16.07 0.00 33.94 4.34
426 427 3.496155 GGCTGGCGTATTATAGTCGTAC 58.504 50.000 0.00 0.00 0.00 3.67
428 429 3.740590 CTGGCGTATTATAGTCGTACGG 58.259 50.000 16.52 0.00 40.94 4.02
429 430 3.398406 TGGCGTATTATAGTCGTACGGA 58.602 45.455 16.52 1.38 40.94 4.69
430 431 3.433274 TGGCGTATTATAGTCGTACGGAG 59.567 47.826 16.52 0.00 40.94 4.63
431 432 3.679980 GGCGTATTATAGTCGTACGGAGA 59.320 47.826 16.52 0.59 40.94 3.71
432 433 4.152402 GGCGTATTATAGTCGTACGGAGAA 59.848 45.833 16.52 5.41 40.94 2.87
433 434 5.163814 GGCGTATTATAGTCGTACGGAGAAT 60.164 44.000 16.52 12.07 40.94 2.40
434 435 6.036083 GGCGTATTATAGTCGTACGGAGAATA 59.964 42.308 16.52 11.15 40.94 1.75
435 436 6.897138 GCGTATTATAGTCGTACGGAGAATAC 59.103 42.308 16.52 19.43 40.94 1.89
436 437 7.411912 GCGTATTATAGTCGTACGGAGAATACA 60.412 40.741 25.24 5.05 40.94 2.29
438 439 9.535270 GTATTATAGTCGTACGGAGAATACAAC 57.465 37.037 23.25 11.69 30.47 3.32
439 440 7.792374 TTATAGTCGTACGGAGAATACAACT 57.208 36.000 16.52 10.31 0.00 3.16
440 441 4.352600 AGTCGTACGGAGAATACAACTG 57.647 45.455 16.52 0.00 0.00 3.16
441 442 3.755378 AGTCGTACGGAGAATACAACTGT 59.245 43.478 16.52 0.00 0.00 3.55
442 443 4.217118 AGTCGTACGGAGAATACAACTGTT 59.783 41.667 16.52 0.00 0.00 3.16
443 444 4.322804 GTCGTACGGAGAATACAACTGTTG 59.677 45.833 18.44 18.44 0.00 3.33
456 457 5.086104 ACAACTGTTGTATGGCTAGGTAG 57.914 43.478 23.62 0.00 43.27 3.18
457 458 4.081087 ACAACTGTTGTATGGCTAGGTAGG 60.081 45.833 23.62 0.00 43.27 3.18
458 459 3.990369 ACTGTTGTATGGCTAGGTAGGA 58.010 45.455 0.00 0.00 0.00 2.94
460 461 3.961408 CTGTTGTATGGCTAGGTAGGAGT 59.039 47.826 0.00 0.00 0.00 3.85
463 464 2.516702 TGTATGGCTAGGTAGGAGTCCA 59.483 50.000 12.86 0.00 0.00 4.02
464 465 2.089600 ATGGCTAGGTAGGAGTCCAC 57.910 55.000 12.86 7.54 0.00 4.02
466 467 0.262285 GGCTAGGTAGGAGTCCACCT 59.738 60.000 26.56 26.56 46.88 4.00
467 468 1.343176 GGCTAGGTAGGAGTCCACCTT 60.343 57.143 27.78 16.97 42.68 3.50
468 469 1.757699 GCTAGGTAGGAGTCCACCTTG 59.242 57.143 27.78 25.95 42.68 3.61
470 471 1.645710 AGGTAGGAGTCCACCTTGTG 58.354 55.000 21.20 0.00 42.68 3.33
471 472 1.132817 AGGTAGGAGTCCACCTTGTGT 60.133 52.381 21.20 5.85 42.68 3.72
472 473 1.002087 GGTAGGAGTCCACCTTGTGTG 59.998 57.143 12.86 0.00 45.01 3.82
482 483 3.648339 CACCTTGTGTGGAGGAATTTG 57.352 47.619 0.00 0.00 41.52 2.32
484 485 2.958355 ACCTTGTGTGGAGGAATTTGTG 59.042 45.455 0.00 0.00 37.72 3.33
486 487 1.327303 TGTGTGGAGGAATTTGTGCC 58.673 50.000 0.00 0.00 0.00 5.01
487 488 1.327303 GTGTGGAGGAATTTGTGCCA 58.673 50.000 0.00 0.00 0.00 4.92
488 489 1.000274 GTGTGGAGGAATTTGTGCCAC 60.000 52.381 0.00 0.00 46.97 5.01
490 491 1.963515 GTGGAGGAATTTGTGCCACTT 59.036 47.619 0.00 0.00 44.23 3.16
493 494 2.827921 GGAGGAATTTGTGCCACTTGAT 59.172 45.455 0.00 0.00 0.00 2.57
494 495 3.259123 GGAGGAATTTGTGCCACTTGATT 59.741 43.478 0.00 0.00 0.00 2.57
495 496 4.462483 GGAGGAATTTGTGCCACTTGATTA 59.538 41.667 0.00 0.00 0.00 1.75
496 497 5.127682 GGAGGAATTTGTGCCACTTGATTAT 59.872 40.000 0.00 0.00 0.00 1.28
500 501 7.014615 AGGAATTTGTGCCACTTGATTATATCC 59.985 37.037 0.00 0.00 0.00 2.59
501 502 6.655078 ATTTGTGCCACTTGATTATATCCC 57.345 37.500 0.00 0.00 0.00 3.85
502 503 5.387113 TTGTGCCACTTGATTATATCCCT 57.613 39.130 0.00 0.00 0.00 4.20
503 504 6.508030 TTGTGCCACTTGATTATATCCCTA 57.492 37.500 0.00 0.00 0.00 3.53
504 505 6.702449 TGTGCCACTTGATTATATCCCTAT 57.298 37.500 0.00 0.00 0.00 2.57
505 506 6.711277 TGTGCCACTTGATTATATCCCTATC 58.289 40.000 0.00 0.00 0.00 2.08
508 509 6.501805 TGCCACTTGATTATATCCCTATCACT 59.498 38.462 0.00 0.00 0.00 3.41
509 510 7.044798 GCCACTTGATTATATCCCTATCACTC 58.955 42.308 0.00 0.00 0.00 3.51
510 511 7.093112 GCCACTTGATTATATCCCTATCACTCT 60.093 40.741 0.00 0.00 0.00 3.24
511 512 8.256605 CCACTTGATTATATCCCTATCACTCTG 58.743 40.741 0.00 0.00 0.00 3.35
512 513 9.029368 CACTTGATTATATCCCTATCACTCTGA 57.971 37.037 0.00 0.00 0.00 3.27
513 514 9.607333 ACTTGATTATATCCCTATCACTCTGAA 57.393 33.333 0.00 0.00 0.00 3.02
523 524 8.980481 TCCCTATCACTCTGAAATAAAAATCC 57.020 34.615 0.00 0.00 0.00 3.01
524 525 7.998964 TCCCTATCACTCTGAAATAAAAATCCC 59.001 37.037 0.00 0.00 0.00 3.85
530 531 9.020731 TCACTCTGAAATAAAAATCCCTTTACC 57.979 33.333 0.00 0.00 0.00 2.85
531 532 8.251026 CACTCTGAAATAAAAATCCCTTTACCC 58.749 37.037 0.00 0.00 0.00 3.69
533 534 8.589701 TCTGAAATAAAAATCCCTTTACCCTC 57.410 34.615 0.00 0.00 0.00 4.30
534 535 7.338449 TCTGAAATAAAAATCCCTTTACCCTCG 59.662 37.037 0.00 0.00 0.00 4.63
535 536 7.176490 TGAAATAAAAATCCCTTTACCCTCGA 58.824 34.615 0.00 0.00 0.00 4.04
536 537 7.670559 TGAAATAAAAATCCCTTTACCCTCGAA 59.329 33.333 0.00 0.00 0.00 3.71
537 538 8.425237 AAATAAAAATCCCTTTACCCTCGAAA 57.575 30.769 0.00 0.00 0.00 3.46
538 539 8.425237 AATAAAAATCCCTTTACCCTCGAAAA 57.575 30.769 0.00 0.00 0.00 2.29
539 540 6.734502 AAAAATCCCTTTACCCTCGAAAAA 57.265 33.333 0.00 0.00 0.00 1.94
558 559 2.971901 AAAAACGACCCAAGGAGGAT 57.028 45.000 0.00 0.00 41.22 3.24
561 562 4.586306 AAAACGACCCAAGGAGGATAAT 57.414 40.909 0.00 0.00 41.22 1.28
564 565 1.348036 CGACCCAAGGAGGATAATCCC 59.652 57.143 0.00 0.00 40.53 3.85
566 567 0.693049 CCCAAGGAGGATAATCCCCG 59.307 60.000 0.00 0.00 40.53 5.73
567 568 1.435256 CCAAGGAGGATAATCCCCGT 58.565 55.000 0.00 0.00 40.53 5.28
568 569 1.348036 CCAAGGAGGATAATCCCCGTC 59.652 57.143 0.00 0.00 40.53 4.79
569 570 1.348036 CAAGGAGGATAATCCCCGTCC 59.652 57.143 0.00 0.00 40.53 4.79
570 571 0.178900 AGGAGGATAATCCCCGTCCC 60.179 60.000 0.00 0.00 40.53 4.46
571 572 1.542187 GGAGGATAATCCCCGTCCCG 61.542 65.000 0.00 0.00 37.19 5.14
572 573 0.541296 GAGGATAATCCCCGTCCCGA 60.541 60.000 0.00 0.00 37.19 5.14
573 574 0.116541 AGGATAATCCCCGTCCCGAT 59.883 55.000 0.00 0.00 37.19 4.18
574 575 0.981943 GGATAATCCCCGTCCCGATT 59.018 55.000 0.00 0.00 33.39 3.34
587 588 2.872858 GTCCCGATTTGATAAGGTGAGC 59.127 50.000 0.00 0.00 0.00 4.26
600 601 4.408821 TGAGCCACCCGTGCATCC 62.409 66.667 0.00 0.00 0.00 3.51
656 662 3.592814 CCCTCGCCATCGTCGCTA 61.593 66.667 0.00 0.00 36.96 4.26
657 663 2.353607 CCTCGCCATCGTCGCTAC 60.354 66.667 0.00 0.00 36.96 3.58
750 757 1.392710 CCTTCCGTAGCATCCGTCCT 61.393 60.000 0.00 0.00 0.00 3.85
832 841 1.695597 CTGCCTCCCTCCCTCCATT 60.696 63.158 0.00 0.00 0.00 3.16
927 936 4.749310 CCAAGCGCGACTCCTGCT 62.749 66.667 12.10 0.00 41.60 4.24
929 938 2.031163 AAGCGCGACTCCTGCTTT 59.969 55.556 12.10 0.00 46.12 3.51
1131 1140 3.861840 GCTTTACTAGCCACAGTCATCA 58.138 45.455 0.00 0.00 44.48 3.07
1132 1141 3.619038 GCTTTACTAGCCACAGTCATCAC 59.381 47.826 0.00 0.00 44.48 3.06
1133 1142 4.621747 GCTTTACTAGCCACAGTCATCACT 60.622 45.833 0.00 0.00 44.48 3.41
1134 1143 4.720649 TTACTAGCCACAGTCATCACTC 57.279 45.455 0.00 0.00 0.00 3.51
1135 1144 2.813907 ACTAGCCACAGTCATCACTCT 58.186 47.619 0.00 0.00 0.00 3.24
1136 1145 2.757868 ACTAGCCACAGTCATCACTCTC 59.242 50.000 0.00 0.00 0.00 3.20
1137 1146 0.901124 AGCCACAGTCATCACTCTCC 59.099 55.000 0.00 0.00 0.00 3.71
1138 1147 0.459237 GCCACAGTCATCACTCTCCG 60.459 60.000 0.00 0.00 0.00 4.63
1139 1148 0.891373 CCACAGTCATCACTCTCCGT 59.109 55.000 0.00 0.00 0.00 4.69
1140 1149 2.092323 CCACAGTCATCACTCTCCGTA 58.908 52.381 0.00 0.00 0.00 4.02
1141 1150 2.159366 CCACAGTCATCACTCTCCGTAC 60.159 54.545 0.00 0.00 0.00 3.67
1167 1176 6.500336 TCTACCTACCTTGGTTATTCTGTCT 58.500 40.000 0.00 0.00 41.22 3.41
1168 1177 7.645942 TCTACCTACCTTGGTTATTCTGTCTA 58.354 38.462 0.00 0.00 41.22 2.59
1211 1220 1.265568 CGTGCGTAGTCACACCATAC 58.734 55.000 0.00 0.00 35.02 2.39
1251 1264 3.675228 CGGGTAGTCACTCACACCAATAC 60.675 52.174 0.00 0.00 31.29 1.89
1252 1265 3.514309 GGGTAGTCACTCACACCAATACT 59.486 47.826 0.00 0.00 31.29 2.12
1253 1266 4.708421 GGGTAGTCACTCACACCAATACTA 59.292 45.833 0.00 0.00 31.29 1.82
1254 1267 5.163540 GGGTAGTCACTCACACCAATACTAG 60.164 48.000 0.00 0.00 31.29 2.57
1255 1268 5.418209 GGTAGTCACTCACACCAATACTAGT 59.582 44.000 0.00 0.00 0.00 2.57
1256 1269 6.600822 GGTAGTCACTCACACCAATACTAGTA 59.399 42.308 4.77 4.77 0.00 1.82
1257 1270 6.512342 AGTCACTCACACCAATACTAGTAC 57.488 41.667 4.31 0.00 0.00 2.73
1258 1271 5.123502 AGTCACTCACACCAATACTAGTACG 59.876 44.000 4.31 0.00 0.00 3.67
1259 1272 5.005740 TCACTCACACCAATACTAGTACGT 58.994 41.667 4.31 0.00 0.00 3.57
1260 1273 6.092670 GTCACTCACACCAATACTAGTACGTA 59.907 42.308 4.31 0.00 0.00 3.57
1286 1299 6.202570 TGAATTTGCAATTTACTTTGAGCCAC 59.797 34.615 0.00 0.00 0.00 5.01
1349 1373 1.139163 CACCGCAATTCCACAAAAGC 58.861 50.000 0.00 0.00 0.00 3.51
1418 1443 5.818336 TCACGGCTCCATTAAATCGAAATTA 59.182 36.000 0.00 0.00 0.00 1.40
1434 1459 8.773404 ATCGAAATTAAATTATACTCCCTCCG 57.227 34.615 0.00 0.00 0.00 4.63
1435 1460 7.729116 TCGAAATTAAATTATACTCCCTCCGT 58.271 34.615 0.00 0.00 0.00 4.69
1437 1462 7.117379 CGAAATTAAATTATACTCCCTCCGTCC 59.883 40.741 0.00 0.00 0.00 4.79
1459 1499 1.008424 TCCTCTTGATCGATCGCGC 60.008 57.895 20.03 0.00 37.46 6.86
1543 1584 8.429237 TTTGAATTTATTTACTGGGTGGTGAT 57.571 30.769 0.00 0.00 0.00 3.06
1544 1585 8.429237 TTGAATTTATTTACTGGGTGGTGATT 57.571 30.769 0.00 0.00 0.00 2.57
1545 1586 7.835822 TGAATTTATTTACTGGGTGGTGATTG 58.164 34.615 0.00 0.00 0.00 2.67
1546 1587 6.790232 ATTTATTTACTGGGTGGTGATTGG 57.210 37.500 0.00 0.00 0.00 3.16
1547 1588 1.917872 TTTACTGGGTGGTGATTGGC 58.082 50.000 0.00 0.00 0.00 4.52
1548 1589 0.322098 TTACTGGGTGGTGATTGGCG 60.322 55.000 0.00 0.00 0.00 5.69
1690 1747 3.605634 ACGTAACAATATCAGCTTGGCA 58.394 40.909 0.00 0.00 0.00 4.92
1696 1753 3.944015 ACAATATCAGCTTGGCACTTCTC 59.056 43.478 0.00 0.00 0.00 2.87
1706 1763 2.494059 TGGCACTTCTCCTTTTTCTCG 58.506 47.619 0.00 0.00 0.00 4.04
1843 1905 5.405935 ACTCATGCATGTCTACAACTACA 57.594 39.130 25.43 1.46 0.00 2.74
1844 1906 5.793817 ACTCATGCATGTCTACAACTACAA 58.206 37.500 25.43 1.25 0.00 2.41
1845 1907 5.639506 ACTCATGCATGTCTACAACTACAAC 59.360 40.000 25.43 0.00 0.00 3.32
1846 1908 5.793817 TCATGCATGTCTACAACTACAACT 58.206 37.500 25.43 0.00 0.00 3.16
1887 1952 7.555914 TCCTGTGTAGATGCATGCTTTTAAATA 59.444 33.333 20.33 5.04 0.00 1.40
1913 1986 8.868522 AATTAATGAACTGGAGATTCTCAACA 57.131 30.769 15.36 4.50 31.08 3.33
1914 1987 8.868522 ATTAATGAACTGGAGATTCTCAACAA 57.131 30.769 15.36 0.00 31.08 2.83
1917 1990 6.624352 TGAACTGGAGATTCTCAACAAAAG 57.376 37.500 15.36 5.42 31.08 2.27
1932 2005 6.630071 TCAACAAAAGAAAACCCTGAAAGAG 58.370 36.000 0.00 0.00 34.07 2.85
1950 2023 1.126479 GAGCGTAGTAGTATCTCGCCG 59.874 57.143 7.28 0.00 46.49 6.46
2012 2085 3.242706 GGACAAAATTTGCCAGCAACAAC 60.243 43.478 4.18 0.00 35.46 3.32
2014 2087 3.946558 ACAAAATTTGCCAGCAACAACAT 59.053 34.783 4.18 0.00 35.46 2.71
2039 2127 1.005867 GGAACTTCCCACGCGTACA 60.006 57.895 13.44 0.00 0.00 2.90
2122 2210 1.000896 CCATGACAGTTGGGTCCCC 60.001 63.158 5.13 0.00 36.97 4.81
2124 2212 1.846124 ATGACAGTTGGGTCCCCGT 60.846 57.895 5.13 0.00 39.42 5.28
2162 2253 0.663153 AACGCTTGCTTCTGTTGGAC 59.337 50.000 0.00 0.00 0.00 4.02
2207 2298 2.679450 TCGGGAGTTGTTTATGTCGTG 58.321 47.619 0.00 0.00 0.00 4.35
2356 2453 3.138994 TCCTACCTGGAGGAGGAGT 57.861 57.895 0.00 0.00 46.33 3.85
2375 2472 5.419471 AGGAGTAGTTGTGATCAAGAGGTAC 59.581 44.000 0.00 0.00 33.97 3.34
2377 2474 6.602406 GGAGTAGTTGTGATCAAGAGGTACTA 59.398 42.308 0.00 0.00 41.55 1.82
2422 2519 2.034685 CAGATCTCGGCGTGAGGATAAA 59.965 50.000 17.06 0.00 45.32 1.40
2423 2520 2.034812 AGATCTCGGCGTGAGGATAAAC 59.965 50.000 17.06 3.35 45.32 2.01
2424 2521 1.471119 TCTCGGCGTGAGGATAAACT 58.529 50.000 6.85 0.00 45.32 2.66
2530 2628 3.799917 GCAGCATATTGGGTTATTGGCAC 60.800 47.826 0.00 0.00 0.00 5.01
2569 2667 2.747799 GCCTGCTAGGGGAAAAGAGATG 60.748 54.545 4.65 0.00 35.37 2.90
2616 2714 7.363268 GCCCTCATGTTTTCTTCAGAATAATGT 60.363 37.037 0.00 0.00 33.54 2.71
2661 2788 3.537580 TGCCGTATTGTGGTTTATCCTC 58.462 45.455 0.00 0.00 37.07 3.71
2712 2863 4.700213 ACAATTAAATCGTGGTTCAGAGGG 59.300 41.667 0.00 0.00 0.00 4.30
2719 2870 0.036858 GTGGTTCAGAGGGCTCTCAC 60.037 60.000 17.82 5.06 42.34 3.51
2743 2894 3.682696 TCATGCATATCCAGAGGCATTC 58.317 45.455 0.00 0.00 43.97 2.67
2911 3080 2.902705 AGTAGTGTTTGTCTCCGCAA 57.097 45.000 0.00 0.00 0.00 4.85
2914 3083 4.134563 AGTAGTGTTTGTCTCCGCAAAAT 58.865 39.130 0.00 0.00 39.65 1.82
2917 3150 3.252458 AGTGTTTGTCTCCGCAAAATACC 59.748 43.478 0.00 0.00 39.65 2.73
2921 3154 1.274167 TGTCTCCGCAAAATACCGAGT 59.726 47.619 0.00 0.00 0.00 4.18
2922 3155 2.492881 TGTCTCCGCAAAATACCGAGTA 59.507 45.455 0.00 0.00 0.00 2.59
2923 3156 2.856557 GTCTCCGCAAAATACCGAGTAC 59.143 50.000 0.00 0.00 0.00 2.73
2994 3234 1.285578 GACAGAGCCTCATTTCTCGC 58.714 55.000 0.00 0.00 34.66 5.03
3030 3270 1.453379 GCATGGCTGCTGAGGTCAT 60.453 57.895 0.00 0.00 45.32 3.06
3050 3290 1.405105 TGAGGTGAGCTGCAAAACAAC 59.595 47.619 1.02 0.00 0.00 3.32
3216 3460 2.135139 ACTCAGCACACACATGTAACG 58.865 47.619 0.00 0.00 36.72 3.18
3249 3514 3.965379 CTGGATCAGGATCAGGATCAG 57.035 52.381 20.75 14.43 41.30 2.90
3250 3515 2.568062 CTGGATCAGGATCAGGATCAGG 59.432 54.545 20.75 12.26 41.30 3.86
3251 3516 2.180751 TGGATCAGGATCAGGATCAGGA 59.819 50.000 20.75 7.82 41.30 3.86
3252 3517 3.181398 TGGATCAGGATCAGGATCAGGAT 60.181 47.826 20.75 11.66 41.30 3.24
3253 3518 3.451902 GGATCAGGATCAGGATCAGGATC 59.548 52.174 21.74 21.74 42.19 3.36
3254 3519 3.625252 TCAGGATCAGGATCAGGATCA 57.375 47.619 20.75 4.90 41.30 2.92
3255 3520 3.508426 TCAGGATCAGGATCAGGATCAG 58.492 50.000 20.75 14.82 41.30 2.90
3256 3521 3.116823 TCAGGATCAGGATCAGGATCAGT 60.117 47.826 20.75 9.68 41.30 3.41
3318 3583 3.864921 GCAGGTTACAGTCAAGTGGTAGG 60.865 52.174 0.00 0.00 0.00 3.18
3340 3606 1.474077 CAGGCTGTAACTTGGGCATTC 59.526 52.381 6.28 0.00 0.00 2.67
3359 3625 6.261118 GCATTCTTCACATGTCTATCCAAAC 58.739 40.000 0.00 0.00 0.00 2.93
3520 3849 5.371526 ACCAGTAGCAGATTATTCATGTGG 58.628 41.667 0.00 0.00 0.00 4.17
3521 3850 5.130975 ACCAGTAGCAGATTATTCATGTGGA 59.869 40.000 0.00 0.00 0.00 4.02
3661 3991 7.071071 TCCTTCCTTGAGGTTGAAATTGAAAAT 59.929 33.333 0.00 0.00 38.04 1.82
3668 3998 7.780064 TGAGGTTGAAATTGAAAATTGTCTGA 58.220 30.769 0.00 0.00 0.00 3.27
3669 3999 8.256605 TGAGGTTGAAATTGAAAATTGTCTGAA 58.743 29.630 0.00 0.00 0.00 3.02
3679 4009 2.681152 ATTGTCTGAAAACGAACGCC 57.319 45.000 0.00 0.00 0.00 5.68
3744 4075 0.962489 ACTACAACTCGCTGCTGACT 59.038 50.000 0.00 0.00 0.00 3.41
3774 4105 2.434774 GCCGTGGAGGAAGGGTTT 59.565 61.111 0.00 0.00 45.00 3.27
3848 4179 1.067821 CATGGAGAAGCTCGAGGTACC 59.932 57.143 18.94 20.08 0.00 3.34
3889 4228 1.443194 GAACCTGAACTCGCGCGTA 60.443 57.895 30.98 15.53 0.00 4.42
3905 4244 3.773442 CGCGTATAAAATTCTGCGTCTC 58.227 45.455 0.00 0.00 40.61 3.36
3929 4268 3.809832 CCGATGAGACTGTTTGTTTCTGT 59.190 43.478 0.00 0.00 31.76 3.41
3981 4320 0.108615 CGTCGAAGCTCAACTGGGAT 60.109 55.000 0.00 0.00 0.00 3.85
4110 4457 0.810648 GATGCGGATTTGGAGTGCAA 59.189 50.000 0.00 0.00 39.26 4.08
4322 4682 6.013898 ACAGCTGCTGGTATCAGTCAATATAT 60.014 38.462 31.00 3.25 42.78 0.86
4394 4754 1.472480 GTGTGCACAACTTTGGTCAGT 59.528 47.619 23.59 0.00 0.00 3.41
4422 4782 5.222007 ACTGAGAATTGAATCCAGAGGTGTT 60.222 40.000 8.48 0.00 0.00 3.32
4476 4837 7.865385 GCTATGGTTTGTTTTGTGTCTTTCATA 59.135 33.333 0.00 0.00 0.00 2.15
4478 4839 8.816640 ATGGTTTGTTTTGTGTCTTTCATATC 57.183 30.769 0.00 0.00 0.00 1.63
4479 4840 7.776107 TGGTTTGTTTTGTGTCTTTCATATCA 58.224 30.769 0.00 0.00 0.00 2.15
4481 4842 7.096065 GGTTTGTTTTGTGTCTTTCATATCAGC 60.096 37.037 0.00 0.00 0.00 4.26
4484 4845 7.307694 TGTTTTGTGTCTTTCATATCAGCATC 58.692 34.615 0.00 0.00 0.00 3.91
4539 4901 0.706433 ATGCATGACTTTGGGGTCCT 59.294 50.000 0.00 0.00 35.54 3.85
4567 4929 2.884012 TCTTGTTTCCATTGCATGTCGT 59.116 40.909 0.00 0.00 0.00 4.34
4580 4942 7.308169 CCATTGCATGTCGTTGTCTGATATATT 60.308 37.037 0.00 0.00 0.00 1.28
4581 4943 8.711457 CATTGCATGTCGTTGTCTGATATATTA 58.289 33.333 0.00 0.00 0.00 0.98
4582 4944 7.873739 TGCATGTCGTTGTCTGATATATTAG 57.126 36.000 0.00 0.00 0.00 1.73
4629 8284 0.817013 GGCCGAAAATGCTGAATGGA 59.183 50.000 0.00 0.00 0.00 3.41
4651 8306 2.972892 GATGAGCACCATGGAGGCCC 62.973 65.000 21.47 13.08 43.14 5.80
5001 8667 3.089874 CCAGGGCCGAGGGATCAA 61.090 66.667 9.90 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 7.327975 AGAAACGTATATGACCAATTCACAGA 58.672 34.615 0.00 0.00 36.92 3.41
4 5 9.607988 AATAGAAACGTATATGACCAATTCACA 57.392 29.630 0.00 0.00 36.92 3.58
12 13 9.623350 GGAGTAGAAATAGAAACGTATATGACC 57.377 37.037 0.00 0.00 0.00 4.02
13 14 9.623350 GGGAGTAGAAATAGAAACGTATATGAC 57.377 37.037 0.00 0.00 0.00 3.06
15 16 8.804204 AGGGGAGTAGAAATAGAAACGTATATG 58.196 37.037 0.00 0.00 0.00 1.78
16 17 8.953223 AGGGGAGTAGAAATAGAAACGTATAT 57.047 34.615 0.00 0.00 0.00 0.86
17 18 8.636213 CAAGGGGAGTAGAAATAGAAACGTATA 58.364 37.037 0.00 0.00 0.00 1.47
18 19 7.125356 ACAAGGGGAGTAGAAATAGAAACGTAT 59.875 37.037 0.00 0.00 0.00 3.06
19 20 6.438425 ACAAGGGGAGTAGAAATAGAAACGTA 59.562 38.462 0.00 0.00 0.00 3.57
20 21 5.247792 ACAAGGGGAGTAGAAATAGAAACGT 59.752 40.000 0.00 0.00 0.00 3.99
21 22 5.731591 ACAAGGGGAGTAGAAATAGAAACG 58.268 41.667 0.00 0.00 0.00 3.60
22 23 7.226918 GCATACAAGGGGAGTAGAAATAGAAAC 59.773 40.741 0.00 0.00 0.00 2.78
25 26 5.010719 CGCATACAAGGGGAGTAGAAATAGA 59.989 44.000 0.00 0.00 0.00 1.98
26 27 5.010719 TCGCATACAAGGGGAGTAGAAATAG 59.989 44.000 0.00 0.00 0.00 1.73
28 29 3.709653 TCGCATACAAGGGGAGTAGAAAT 59.290 43.478 0.00 0.00 0.00 2.17
31 32 2.307768 CTCGCATACAAGGGGAGTAGA 58.692 52.381 0.00 0.00 39.64 2.59
32 33 1.269831 GCTCGCATACAAGGGGAGTAG 60.270 57.143 7.35 0.00 44.50 2.57
33 34 0.750850 GCTCGCATACAAGGGGAGTA 59.249 55.000 7.35 0.00 44.50 2.59
35 36 1.227674 GGCTCGCATACAAGGGGAG 60.228 63.158 0.00 0.00 45.19 4.30
37 38 0.468226 TTAGGCTCGCATACAAGGGG 59.532 55.000 0.00 0.00 0.00 4.79
38 39 1.940613 GTTTAGGCTCGCATACAAGGG 59.059 52.381 0.00 0.00 0.00 3.95
39 40 1.593006 CGTTTAGGCTCGCATACAAGG 59.407 52.381 0.00 0.00 0.00 3.61
42 43 1.470285 GGTCGTTTAGGCTCGCATACA 60.470 52.381 0.00 0.00 0.00 2.29
44 45 0.103572 GGGTCGTTTAGGCTCGCATA 59.896 55.000 0.00 0.00 0.00 3.14
45 46 1.153429 GGGTCGTTTAGGCTCGCAT 60.153 57.895 0.00 0.00 0.00 4.73
46 47 2.102109 TTGGGTCGTTTAGGCTCGCA 62.102 55.000 0.00 0.00 0.00 5.10
49 50 0.611714 TCCTTGGGTCGTTTAGGCTC 59.388 55.000 0.00 0.00 0.00 4.70
50 51 0.613777 CTCCTTGGGTCGTTTAGGCT 59.386 55.000 0.00 0.00 0.00 4.58
55 56 0.464916 AAACGCTCCTTGGGTCGTTT 60.465 50.000 18.75 18.75 42.51 3.60
56 57 0.883370 GAAACGCTCCTTGGGTCGTT 60.883 55.000 11.67 11.67 41.41 3.85
57 58 1.301479 GAAACGCTCCTTGGGTCGT 60.301 57.895 2.43 2.43 41.18 4.34
58 59 0.673644 ATGAAACGCTCCTTGGGTCG 60.674 55.000 0.00 0.00 41.18 4.79
61 62 0.391130 TCGATGAAACGCTCCTTGGG 60.391 55.000 0.00 0.00 0.00 4.12
62 63 1.594862 GATCGATGAAACGCTCCTTGG 59.405 52.381 0.54 0.00 0.00 3.61
65 66 1.751351 TCAGATCGATGAAACGCTCCT 59.249 47.619 0.54 0.00 0.00 3.69
67 68 1.514811 CGTCAGATCGATGAAACGCTC 59.485 52.381 0.54 0.00 31.67 5.03
68 69 1.550065 CGTCAGATCGATGAAACGCT 58.450 50.000 0.54 0.00 31.67 5.07
69 70 0.572590 CCGTCAGATCGATGAAACGC 59.427 55.000 0.54 0.00 31.67 4.84
70 71 1.200483 CCCGTCAGATCGATGAAACG 58.800 55.000 0.54 9.26 31.67 3.60
72 73 1.202256 CGACCCGTCAGATCGATGAAA 60.202 52.381 0.54 0.00 38.10 2.69
74 75 1.444917 CCGACCCGTCAGATCGATGA 61.445 60.000 0.54 0.00 38.10 2.92
75 76 1.008424 CCGACCCGTCAGATCGATG 60.008 63.158 0.54 0.00 38.10 3.84
76 77 2.846652 GCCGACCCGTCAGATCGAT 61.847 63.158 0.00 0.00 38.10 3.59
78 79 4.907034 CGCCGACCCGTCAGATCG 62.907 72.222 0.00 0.00 35.62 3.69
80 81 3.823330 GTCGCCGACCCGTCAGAT 61.823 66.667 5.81 0.00 0.00 2.90
92 93 1.776034 GAATCATTCCTGCGGTCGCC 61.776 60.000 12.94 0.00 41.09 5.54
93 94 0.811616 AGAATCATTCCTGCGGTCGC 60.812 55.000 8.54 8.54 42.35 5.19
94 95 2.128035 GTAGAATCATTCCTGCGGTCG 58.872 52.381 0.00 0.00 0.00 4.79
96 97 1.754803 TCGTAGAATCATTCCTGCGGT 59.245 47.619 0.00 0.00 38.66 5.68
99 100 2.810650 ACGTCGTAGAATCATTCCTGC 58.189 47.619 0.00 0.00 39.69 4.85
100 101 4.027621 CGAAACGTCGTAGAATCATTCCTG 60.028 45.833 0.00 0.00 42.53 3.86
101 102 4.103357 CGAAACGTCGTAGAATCATTCCT 58.897 43.478 0.00 0.00 42.53 3.36
102 103 4.418572 CGAAACGTCGTAGAATCATTCC 57.581 45.455 0.00 0.00 42.53 3.01
115 116 1.792006 AACACTCCCATCGAAACGTC 58.208 50.000 0.00 0.00 0.00 4.34
116 117 3.604875 ATAACACTCCCATCGAAACGT 57.395 42.857 0.00 0.00 0.00 3.99
117 118 4.939509 AAATAACACTCCCATCGAAACG 57.060 40.909 0.00 0.00 0.00 3.60
118 119 5.344933 GCAAAAATAACACTCCCATCGAAAC 59.655 40.000 0.00 0.00 0.00 2.78
119 120 5.010112 TGCAAAAATAACACTCCCATCGAAA 59.990 36.000 0.00 0.00 0.00 3.46
120 121 4.520874 TGCAAAAATAACACTCCCATCGAA 59.479 37.500 0.00 0.00 0.00 3.71
121 122 4.075682 TGCAAAAATAACACTCCCATCGA 58.924 39.130 0.00 0.00 0.00 3.59
123 124 4.082026 AGCTGCAAAAATAACACTCCCATC 60.082 41.667 1.02 0.00 0.00 3.51
124 125 3.834231 AGCTGCAAAAATAACACTCCCAT 59.166 39.130 1.02 0.00 0.00 4.00
125 126 3.230134 AGCTGCAAAAATAACACTCCCA 58.770 40.909 1.02 0.00 0.00 4.37
126 127 3.942130 AGCTGCAAAAATAACACTCCC 57.058 42.857 1.02 0.00 0.00 4.30
127 128 5.768317 TGTAAGCTGCAAAAATAACACTCC 58.232 37.500 1.02 0.00 0.00 3.85
130 131 7.269435 CATCTGTAAGCTGCAAAAATAACAC 57.731 36.000 1.02 0.00 0.00 3.32
142 143 5.752892 ATTGAAGATGCATCTGTAAGCTG 57.247 39.130 29.34 0.00 37.19 4.24
143 144 5.450137 GCAATTGAAGATGCATCTGTAAGCT 60.450 40.000 29.34 12.99 42.12 3.74
144 145 4.738740 GCAATTGAAGATGCATCTGTAAGC 59.261 41.667 29.34 22.20 42.12 3.09
146 147 5.900865 TGCAATTGAAGATGCATCTGTAA 57.099 34.783 29.34 24.60 46.87 2.41
154 155 1.906966 CGTCGTTGCAATTGAAGATGC 59.093 47.619 10.34 0.00 42.86 3.91
155 156 1.906966 GCGTCGTTGCAATTGAAGATG 59.093 47.619 10.34 8.39 34.15 2.90
156 157 1.806542 AGCGTCGTTGCAATTGAAGAT 59.193 42.857 10.34 10.78 37.31 2.40
157 158 1.194547 GAGCGTCGTTGCAATTGAAGA 59.805 47.619 10.34 0.00 37.31 2.87
158 159 1.195448 AGAGCGTCGTTGCAATTGAAG 59.805 47.619 10.34 7.77 37.31 3.02
159 160 1.069973 CAGAGCGTCGTTGCAATTGAA 60.070 47.619 10.34 0.00 37.31 2.69
162 163 0.602638 TCCAGAGCGTCGTTGCAATT 60.603 50.000 0.59 0.00 37.31 2.32
164 165 1.664649 CTCCAGAGCGTCGTTGCAA 60.665 57.895 0.00 0.00 37.31 4.08
165 166 2.049156 CTCCAGAGCGTCGTTGCA 60.049 61.111 4.59 0.00 37.31 4.08
166 167 2.811317 CCTCCAGAGCGTCGTTGC 60.811 66.667 0.00 0.00 0.00 4.17
168 169 2.992114 AGCCTCCAGAGCGTCGTT 60.992 61.111 0.00 0.00 34.64 3.85
171 172 1.391157 ATCTCAGCCTCCAGAGCGTC 61.391 60.000 0.00 0.00 34.64 5.19
173 174 0.249405 GAATCTCAGCCTCCAGAGCG 60.249 60.000 0.00 0.00 34.64 5.03
175 176 2.807472 GCATGAATCTCAGCCTCCAGAG 60.807 54.545 0.00 0.00 0.00 3.35
176 177 1.140452 GCATGAATCTCAGCCTCCAGA 59.860 52.381 0.00 0.00 0.00 3.86
177 178 1.134189 TGCATGAATCTCAGCCTCCAG 60.134 52.381 0.00 0.00 0.00 3.86
178 179 0.913924 TGCATGAATCTCAGCCTCCA 59.086 50.000 0.00 0.00 0.00 3.86
179 180 2.273538 ATGCATGAATCTCAGCCTCC 57.726 50.000 0.00 0.00 0.00 4.30
180 181 5.700846 CATTAATGCATGAATCTCAGCCTC 58.299 41.667 6.28 0.00 0.00 4.70
181 182 5.707242 CATTAATGCATGAATCTCAGCCT 57.293 39.130 6.28 0.00 0.00 4.58
208 209 0.386838 GTTGATAGCCAAGGCCATGC 59.613 55.000 5.01 3.91 43.17 4.06
209 210 1.406539 GTGTTGATAGCCAAGGCCATG 59.593 52.381 5.01 2.05 43.17 3.66
211 212 0.698238 AGTGTTGATAGCCAAGGCCA 59.302 50.000 5.01 0.00 43.17 5.36
212 213 1.383523 GAGTGTTGATAGCCAAGGCC 58.616 55.000 7.62 0.00 43.17 5.19
213 214 1.009829 CGAGTGTTGATAGCCAAGGC 58.990 55.000 2.02 2.02 42.33 4.35
214 215 1.207089 TCCGAGTGTTGATAGCCAAGG 59.793 52.381 0.00 0.00 35.03 3.61
215 216 2.672961 TCCGAGTGTTGATAGCCAAG 57.327 50.000 0.00 0.00 35.03 3.61
218 219 2.930682 GTTCTTCCGAGTGTTGATAGCC 59.069 50.000 0.00 0.00 0.00 3.93
219 220 2.930682 GGTTCTTCCGAGTGTTGATAGC 59.069 50.000 0.00 0.00 0.00 2.97
232 233 1.337447 TGAACGATCACCGGTTCTTCC 60.337 52.381 2.97 0.00 39.01 3.46
233 234 2.074547 TGAACGATCACCGGTTCTTC 57.925 50.000 2.97 7.80 39.01 2.87
234 235 2.536761 TTGAACGATCACCGGTTCTT 57.463 45.000 2.97 0.00 39.01 2.52
235 236 2.618053 GATTGAACGATCACCGGTTCT 58.382 47.619 2.97 0.00 39.01 3.01
236 237 1.664151 GGATTGAACGATCACCGGTTC 59.336 52.381 2.97 0.00 39.01 3.62
239 240 0.179121 TCGGATTGAACGATCACCGG 60.179 55.000 19.80 0.00 42.46 5.28
240 241 3.339061 TCGGATTGAACGATCACCG 57.661 52.632 15.74 15.74 43.15 4.94
247 248 3.165058 TCAGAGGAATCGGATTGAACG 57.835 47.619 8.18 0.00 0.00 3.95
248 249 3.311048 GCTTCAGAGGAATCGGATTGAAC 59.689 47.826 8.18 0.00 31.34 3.18
249 250 3.198635 AGCTTCAGAGGAATCGGATTGAA 59.801 43.478 8.18 5.04 31.34 2.69
250 251 2.768527 AGCTTCAGAGGAATCGGATTGA 59.231 45.455 8.18 0.00 31.34 2.57
251 252 3.129871 GAGCTTCAGAGGAATCGGATTG 58.870 50.000 8.18 0.00 31.34 2.67
254 255 2.151502 AGAGCTTCAGAGGAATCGGA 57.848 50.000 0.00 0.00 31.34 4.55
255 256 2.287308 CGTAGAGCTTCAGAGGAATCGG 60.287 54.545 0.00 0.00 31.34 4.18
256 257 2.356382 ACGTAGAGCTTCAGAGGAATCG 59.644 50.000 0.00 0.00 31.34 3.34
257 258 4.142359 TGAACGTAGAGCTTCAGAGGAATC 60.142 45.833 0.00 0.00 31.34 2.52
258 259 3.764434 TGAACGTAGAGCTTCAGAGGAAT 59.236 43.478 0.00 0.00 31.34 3.01
260 261 2.791655 TGAACGTAGAGCTTCAGAGGA 58.208 47.619 0.00 0.00 0.00 3.71
261 262 3.791973 ATGAACGTAGAGCTTCAGAGG 57.208 47.619 0.00 0.00 30.04 3.69
262 263 4.560819 GTCAATGAACGTAGAGCTTCAGAG 59.439 45.833 0.00 0.00 30.04 3.35
263 264 4.022329 TGTCAATGAACGTAGAGCTTCAGA 60.022 41.667 0.00 0.00 30.04 3.27
264 265 4.237724 TGTCAATGAACGTAGAGCTTCAG 58.762 43.478 0.00 0.00 30.04 3.02
265 266 4.237724 CTGTCAATGAACGTAGAGCTTCA 58.762 43.478 0.00 0.00 0.00 3.02
266 267 3.614616 CCTGTCAATGAACGTAGAGCTTC 59.385 47.826 0.00 0.00 0.00 3.86
267 268 3.589988 CCTGTCAATGAACGTAGAGCTT 58.410 45.455 0.00 0.00 0.00 3.74
268 269 2.093973 CCCTGTCAATGAACGTAGAGCT 60.094 50.000 0.00 0.00 0.00 4.09
269 270 2.271800 CCCTGTCAATGAACGTAGAGC 58.728 52.381 0.00 0.00 0.00 4.09
271 272 2.232941 GTCCCCTGTCAATGAACGTAGA 59.767 50.000 0.00 0.00 0.00 2.59
272 273 2.028476 TGTCCCCTGTCAATGAACGTAG 60.028 50.000 0.00 0.00 0.00 3.51
274 275 0.762418 TGTCCCCTGTCAATGAACGT 59.238 50.000 0.00 0.00 0.00 3.99
275 276 1.270839 ACTGTCCCCTGTCAATGAACG 60.271 52.381 0.00 0.00 0.00 3.95
276 277 2.039084 AGACTGTCCCCTGTCAATGAAC 59.961 50.000 3.76 0.00 40.81 3.18
277 278 2.338809 AGACTGTCCCCTGTCAATGAA 58.661 47.619 3.76 0.00 40.81 2.57
278 279 2.030027 AGACTGTCCCCTGTCAATGA 57.970 50.000 3.76 0.00 40.81 2.57
279 280 2.867109 AAGACTGTCCCCTGTCAATG 57.133 50.000 3.76 0.00 40.81 2.82
280 281 2.040412 GGAAAGACTGTCCCCTGTCAAT 59.960 50.000 0.00 0.00 40.81 2.57
281 282 1.420138 GGAAAGACTGTCCCCTGTCAA 59.580 52.381 0.00 0.00 40.81 3.18
289 290 1.079057 GGAGCGGGAAAGACTGTCC 60.079 63.158 2.61 2.61 0.00 4.02
304 305 4.302455 CAACTAGATGTCCATAAGCGGAG 58.698 47.826 0.00 0.00 35.10 4.63
305 306 3.492656 GCAACTAGATGTCCATAAGCGGA 60.493 47.826 0.00 0.00 0.00 5.54
306 307 2.802816 GCAACTAGATGTCCATAAGCGG 59.197 50.000 0.00 0.00 0.00 5.52
307 308 3.492383 CAGCAACTAGATGTCCATAAGCG 59.508 47.826 0.00 0.00 0.00 4.68
308 309 4.697514 TCAGCAACTAGATGTCCATAAGC 58.302 43.478 0.00 0.00 34.56 3.09
309 310 6.154203 TCTCAGCAACTAGATGTCCATAAG 57.846 41.667 0.00 0.00 34.56 1.73
310 311 6.239430 GGATCTCAGCAACTAGATGTCCATAA 60.239 42.308 0.00 0.00 34.56 1.90
311 312 5.244851 GGATCTCAGCAACTAGATGTCCATA 59.755 44.000 0.00 0.00 34.56 2.74
312 313 4.040217 GGATCTCAGCAACTAGATGTCCAT 59.960 45.833 0.00 0.00 34.56 3.41
313 314 3.386078 GGATCTCAGCAACTAGATGTCCA 59.614 47.826 0.00 0.00 34.56 4.02
314 315 3.386078 TGGATCTCAGCAACTAGATGTCC 59.614 47.826 0.00 0.00 34.56 4.02
315 316 4.662468 TGGATCTCAGCAACTAGATGTC 57.338 45.455 0.00 0.00 34.56 3.06
317 318 4.236147 CGATGGATCTCAGCAACTAGATG 58.764 47.826 0.00 0.00 32.60 2.90
320 321 2.402305 GCGATGGATCTCAGCAACTAG 58.598 52.381 0.00 0.00 0.00 2.57
321 322 1.069204 GGCGATGGATCTCAGCAACTA 59.931 52.381 0.00 0.00 0.00 2.24
322 323 0.179062 GGCGATGGATCTCAGCAACT 60.179 55.000 0.00 0.00 0.00 3.16
323 324 0.179062 AGGCGATGGATCTCAGCAAC 60.179 55.000 0.00 0.00 0.00 4.17
324 325 0.105593 GAGGCGATGGATCTCAGCAA 59.894 55.000 0.00 0.00 0.00 3.91
325 326 1.044790 TGAGGCGATGGATCTCAGCA 61.045 55.000 0.00 0.00 33.21 4.41
327 328 1.337917 CCATGAGGCGATGGATCTCAG 60.338 57.143 11.93 1.76 45.24 3.35
328 329 0.683412 CCATGAGGCGATGGATCTCA 59.317 55.000 11.93 0.00 45.24 3.27
329 330 0.036577 CCCATGAGGCGATGGATCTC 60.037 60.000 17.36 0.00 45.24 2.75
330 331 0.765903 ACCCATGAGGCGATGGATCT 60.766 55.000 17.36 0.56 45.24 2.75
333 334 1.271127 TTCACCCATGAGGCGATGGA 61.271 55.000 17.36 0.00 45.24 3.41
334 335 0.394216 TTTCACCCATGAGGCGATGG 60.394 55.000 10.68 10.68 42.45 3.51
336 337 0.107017 CCTTTCACCCATGAGGCGAT 60.107 55.000 0.00 0.00 40.58 4.58
337 338 1.299648 CCTTTCACCCATGAGGCGA 59.700 57.895 0.00 0.00 40.58 5.54
338 339 1.750399 CCCTTTCACCCATGAGGCG 60.750 63.158 0.00 0.00 40.58 5.52
339 340 0.039618 TTCCCTTTCACCCATGAGGC 59.960 55.000 0.00 0.00 40.58 4.70
340 341 2.834638 ATTCCCTTTCACCCATGAGG 57.165 50.000 0.00 0.00 43.78 3.86
341 342 6.796785 AATAAATTCCCTTTCACCCATGAG 57.203 37.500 0.00 0.00 35.83 2.90
342 343 6.790232 GAATAAATTCCCTTTCACCCATGA 57.210 37.500 0.00 0.00 0.00 3.07
355 356 7.950496 CGATTAATCTTCGACGGAATAAATTCC 59.050 37.037 13.45 11.11 44.15 3.01
356 357 8.485591 ACGATTAATCTTCGACGGAATAAATTC 58.514 33.333 13.45 0.00 39.81 2.17
357 358 8.273557 CACGATTAATCTTCGACGGAATAAATT 58.726 33.333 13.45 0.00 39.81 1.82
358 359 7.437267 ACACGATTAATCTTCGACGGAATAAAT 59.563 33.333 13.45 0.00 39.81 1.40
359 360 6.753279 ACACGATTAATCTTCGACGGAATAAA 59.247 34.615 13.45 0.00 39.81 1.40
360 361 6.267817 ACACGATTAATCTTCGACGGAATAA 58.732 36.000 13.45 0.00 39.81 1.40
361 362 5.824429 ACACGATTAATCTTCGACGGAATA 58.176 37.500 13.45 0.00 39.81 1.75
362 363 4.679662 ACACGATTAATCTTCGACGGAAT 58.320 39.130 13.45 0.00 39.81 3.01
364 365 3.770263 ACACGATTAATCTTCGACGGA 57.230 42.857 13.45 0.00 39.81 4.69
367 368 6.627690 TTCTGAACACGATTAATCTTCGAC 57.372 37.500 13.45 3.55 39.81 4.20
368 369 7.648112 CCTATTCTGAACACGATTAATCTTCGA 59.352 37.037 13.45 9.12 39.81 3.71
369 370 7.096023 CCCTATTCTGAACACGATTAATCTTCG 60.096 40.741 13.45 4.72 42.20 3.79
370 371 7.711339 ACCCTATTCTGAACACGATTAATCTTC 59.289 37.037 13.45 10.57 0.00 2.87
371 372 7.565680 ACCCTATTCTGAACACGATTAATCTT 58.434 34.615 13.45 0.97 0.00 2.40
372 373 7.125792 ACCCTATTCTGAACACGATTAATCT 57.874 36.000 13.45 0.00 0.00 2.40
373 374 7.630924 CAACCCTATTCTGAACACGATTAATC 58.369 38.462 5.30 5.30 0.00 1.75
374 375 6.038271 GCAACCCTATTCTGAACACGATTAAT 59.962 38.462 0.00 0.00 0.00 1.40
375 376 5.353123 GCAACCCTATTCTGAACACGATTAA 59.647 40.000 0.00 0.00 0.00 1.40
376 377 4.873827 GCAACCCTATTCTGAACACGATTA 59.126 41.667 0.00 0.00 0.00 1.75
379 380 2.037902 TGCAACCCTATTCTGAACACGA 59.962 45.455 0.00 0.00 0.00 4.35
380 381 2.416547 CTGCAACCCTATTCTGAACACG 59.583 50.000 0.00 0.00 0.00 4.49
382 383 4.517285 GATCTGCAACCCTATTCTGAACA 58.483 43.478 0.00 0.00 0.00 3.18
383 384 3.557595 CGATCTGCAACCCTATTCTGAAC 59.442 47.826 0.00 0.00 0.00 3.18
384 385 3.432186 CCGATCTGCAACCCTATTCTGAA 60.432 47.826 0.00 0.00 0.00 3.02
385 386 2.103094 CCGATCTGCAACCCTATTCTGA 59.897 50.000 0.00 0.00 0.00 3.27
386 387 2.487934 CCGATCTGCAACCCTATTCTG 58.512 52.381 0.00 0.00 0.00 3.02
387 388 1.202698 GCCGATCTGCAACCCTATTCT 60.203 52.381 4.00 0.00 0.00 2.40
388 389 1.202698 AGCCGATCTGCAACCCTATTC 60.203 52.381 11.93 0.00 0.00 1.75
389 390 0.839946 AGCCGATCTGCAACCCTATT 59.160 50.000 11.93 0.00 0.00 1.73
390 391 0.107456 CAGCCGATCTGCAACCCTAT 59.893 55.000 11.93 0.00 35.78 2.57
391 392 1.522092 CAGCCGATCTGCAACCCTA 59.478 57.895 11.93 0.00 35.78 3.53
392 393 2.270205 CAGCCGATCTGCAACCCT 59.730 61.111 11.93 0.00 35.78 4.34
393 394 2.825836 CCAGCCGATCTGCAACCC 60.826 66.667 11.93 0.00 41.50 4.11
394 395 3.512516 GCCAGCCGATCTGCAACC 61.513 66.667 11.93 0.00 41.50 3.77
396 397 2.310327 ATACGCCAGCCGATCTGCAA 62.310 55.000 11.93 0.00 41.50 4.08
397 398 2.310327 AATACGCCAGCCGATCTGCA 62.310 55.000 11.93 0.00 41.50 4.41
399 400 2.370281 ATAATACGCCAGCCGATCTG 57.630 50.000 0.00 0.00 42.49 2.90
400 401 3.090037 ACTATAATACGCCAGCCGATCT 58.910 45.455 0.00 0.00 41.02 2.75
401 402 3.436496 GACTATAATACGCCAGCCGATC 58.564 50.000 0.00 0.00 41.02 3.69
404 405 1.068748 ACGACTATAATACGCCAGCCG 60.069 52.381 0.00 0.00 44.21 5.52
406 407 3.159026 CGTACGACTATAATACGCCAGC 58.841 50.000 10.44 0.00 35.73 4.85
410 411 4.910746 TCTCCGTACGACTATAATACGC 57.089 45.455 18.76 0.00 40.22 4.42
414 415 8.288208 CAGTTGTATTCTCCGTACGACTATAAT 58.712 37.037 18.76 10.92 42.24 1.28
415 416 7.280876 ACAGTTGTATTCTCCGTACGACTATAA 59.719 37.037 18.76 3.98 42.24 0.98
416 417 6.763135 ACAGTTGTATTCTCCGTACGACTATA 59.237 38.462 18.76 6.09 42.24 1.31
417 418 5.587844 ACAGTTGTATTCTCCGTACGACTAT 59.412 40.000 18.76 7.06 42.24 2.12
418 419 4.937620 ACAGTTGTATTCTCCGTACGACTA 59.062 41.667 18.76 0.00 42.24 2.59
419 420 3.755378 ACAGTTGTATTCTCCGTACGACT 59.245 43.478 18.76 5.71 44.00 4.18
420 421 4.088823 ACAGTTGTATTCTCCGTACGAC 57.911 45.455 18.76 6.19 36.92 4.34
421 422 4.022935 ACAACAGTTGTATTCTCCGTACGA 60.023 41.667 17.74 1.79 43.27 3.43
435 436 4.161565 TCCTACCTAGCCATACAACAGTTG 59.838 45.833 12.03 12.03 0.00 3.16
436 437 4.359105 TCCTACCTAGCCATACAACAGTT 58.641 43.478 0.00 0.00 0.00 3.16
438 439 3.961408 ACTCCTACCTAGCCATACAACAG 59.039 47.826 0.00 0.00 0.00 3.16
439 440 3.958798 GACTCCTACCTAGCCATACAACA 59.041 47.826 0.00 0.00 0.00 3.33
440 441 3.321396 GGACTCCTACCTAGCCATACAAC 59.679 52.174 0.00 0.00 0.00 3.32
441 442 3.052414 TGGACTCCTACCTAGCCATACAA 60.052 47.826 0.00 0.00 0.00 2.41
442 443 2.516702 TGGACTCCTACCTAGCCATACA 59.483 50.000 0.00 0.00 0.00 2.29
443 444 2.892215 GTGGACTCCTACCTAGCCATAC 59.108 54.545 0.00 0.00 0.00 2.39
444 445 2.158355 GGTGGACTCCTACCTAGCCATA 60.158 54.545 8.65 0.00 34.11 2.74
446 447 0.032416 GGTGGACTCCTACCTAGCCA 60.032 60.000 8.65 0.00 34.11 4.75
447 448 0.262285 AGGTGGACTCCTACCTAGCC 59.738 60.000 14.37 0.00 45.20 3.93
449 450 2.761208 CACAAGGTGGACTCCTACCTAG 59.239 54.545 15.65 8.43 46.28 3.02
463 464 2.958355 CACAAATTCCTCCACACAAGGT 59.042 45.455 0.00 0.00 35.29 3.50
464 465 2.288395 GCACAAATTCCTCCACACAAGG 60.288 50.000 0.00 0.00 35.05 3.61
466 467 1.686052 GGCACAAATTCCTCCACACAA 59.314 47.619 0.00 0.00 0.00 3.33
467 468 1.327303 GGCACAAATTCCTCCACACA 58.673 50.000 0.00 0.00 0.00 3.72
468 469 1.000274 GTGGCACAAATTCCTCCACAC 60.000 52.381 13.86 0.00 44.16 3.82
470 471 1.620822 AGTGGCACAAATTCCTCCAC 58.379 50.000 21.41 9.70 44.16 4.02
471 472 1.962807 CAAGTGGCACAAATTCCTCCA 59.037 47.619 21.41 0.00 44.16 3.86
472 473 2.238521 TCAAGTGGCACAAATTCCTCC 58.761 47.619 21.41 0.00 44.16 4.30
473 474 4.525912 AATCAAGTGGCACAAATTCCTC 57.474 40.909 21.41 0.00 44.16 3.71
475 476 7.147976 GGATATAATCAAGTGGCACAAATTCC 58.852 38.462 21.41 9.40 44.16 3.01
476 477 7.014615 AGGGATATAATCAAGTGGCACAAATTC 59.985 37.037 21.41 4.47 44.16 2.17
477 478 6.840705 AGGGATATAATCAAGTGGCACAAATT 59.159 34.615 21.41 16.86 44.16 1.82
478 479 6.376248 AGGGATATAATCAAGTGGCACAAAT 58.624 36.000 21.41 6.99 44.16 2.32
481 482 6.272090 TGATAGGGATATAATCAAGTGGCACA 59.728 38.462 21.41 0.00 0.00 4.57
482 483 6.595716 GTGATAGGGATATAATCAAGTGGCAC 59.404 42.308 10.29 10.29 31.77 5.01
484 485 6.951971 AGTGATAGGGATATAATCAAGTGGC 58.048 40.000 0.00 0.00 31.77 5.01
486 487 9.029368 TCAGAGTGATAGGGATATAATCAAGTG 57.971 37.037 0.00 0.00 31.77 3.16
487 488 9.607333 TTCAGAGTGATAGGGATATAATCAAGT 57.393 33.333 0.00 0.00 31.77 3.16
500 501 8.986929 AGGGATTTTTATTTCAGAGTGATAGG 57.013 34.615 0.00 0.00 0.00 2.57
504 505 9.020731 GGTAAAGGGATTTTTATTTCAGAGTGA 57.979 33.333 0.00 0.00 0.00 3.41
505 506 8.251026 GGGTAAAGGGATTTTTATTTCAGAGTG 58.749 37.037 0.00 0.00 0.00 3.51
508 509 7.338449 CGAGGGTAAAGGGATTTTTATTTCAGA 59.662 37.037 0.00 0.00 0.00 3.27
509 510 7.338449 TCGAGGGTAAAGGGATTTTTATTTCAG 59.662 37.037 0.00 0.00 0.00 3.02
510 511 7.176490 TCGAGGGTAAAGGGATTTTTATTTCA 58.824 34.615 0.00 0.00 0.00 2.69
511 512 7.634671 TCGAGGGTAAAGGGATTTTTATTTC 57.365 36.000 0.00 0.00 0.00 2.17
512 513 8.425237 TTTCGAGGGTAAAGGGATTTTTATTT 57.575 30.769 0.00 0.00 0.00 1.40
513 514 8.425237 TTTTCGAGGGTAAAGGGATTTTTATT 57.575 30.769 0.00 0.00 0.00 1.40
515 516 7.836479 TTTTTCGAGGGTAAAGGGATTTTTA 57.164 32.000 0.00 0.00 0.00 1.52
516 517 6.734502 TTTTTCGAGGGTAAAGGGATTTTT 57.265 33.333 0.00 0.00 0.00 1.94
539 540 2.971901 ATCCTCCTTGGGTCGTTTTT 57.028 45.000 0.00 0.00 36.20 1.94
540 541 4.524053 GATTATCCTCCTTGGGTCGTTTT 58.476 43.478 0.00 0.00 36.20 2.43
541 542 3.118000 GGATTATCCTCCTTGGGTCGTTT 60.118 47.826 3.59 0.00 36.20 3.60
542 543 2.438392 GGATTATCCTCCTTGGGTCGTT 59.562 50.000 3.59 0.00 36.20 3.85
543 544 2.047830 GGATTATCCTCCTTGGGTCGT 58.952 52.381 3.59 0.00 36.20 4.34
544 545 1.348036 GGGATTATCCTCCTTGGGTCG 59.652 57.143 11.40 0.00 36.57 4.79
545 546 1.705745 GGGGATTATCCTCCTTGGGTC 59.294 57.143 11.40 0.00 36.57 4.46
546 547 1.834540 GGGGATTATCCTCCTTGGGT 58.165 55.000 11.40 0.00 36.57 4.51
547 548 0.693049 CGGGGATTATCCTCCTTGGG 59.307 60.000 11.40 0.00 31.67 4.12
548 549 1.348036 GACGGGGATTATCCTCCTTGG 59.652 57.143 11.40 0.00 31.67 3.61
549 550 1.348036 GGACGGGGATTATCCTCCTTG 59.652 57.143 11.40 0.00 31.67 3.61
550 551 1.730851 GGACGGGGATTATCCTCCTT 58.269 55.000 11.40 4.51 31.67 3.36
566 567 2.872858 GCTCACCTTATCAAATCGGGAC 59.127 50.000 0.00 0.00 0.00 4.46
567 568 2.158813 GGCTCACCTTATCAAATCGGGA 60.159 50.000 0.00 0.00 0.00 5.14
568 569 2.222027 GGCTCACCTTATCAAATCGGG 58.778 52.381 0.00 0.00 0.00 5.14
569 570 2.614057 GTGGCTCACCTTATCAAATCGG 59.386 50.000 0.00 0.00 36.63 4.18
570 571 3.951979 GTGGCTCACCTTATCAAATCG 57.048 47.619 0.00 0.00 36.63 3.34
587 588 0.532862 GTCTATGGATGCACGGGTGG 60.533 60.000 0.43 0.00 0.00 4.61
600 601 2.045524 AGGATGGGCTGTCTGTCTATG 58.954 52.381 0.00 0.00 0.00 2.23
654 660 2.104331 CACCCAGCGTAGGCGTAG 59.896 66.667 1.05 0.00 46.35 3.51
655 661 3.454573 CCACCCAGCGTAGGCGTA 61.455 66.667 1.05 0.00 46.35 4.42
657 663 3.792053 GATCCACCCAGCGTAGGCG 62.792 68.421 1.05 0.00 46.35 5.52
658 664 2.109181 GATCCACCCAGCGTAGGC 59.891 66.667 0.00 0.00 40.37 3.93
659 665 2.822399 GGATCCACCCAGCGTAGG 59.178 66.667 6.95 0.00 0.00 3.18
750 757 5.192522 AGAAGATAGAATGGGGAGCTGAAAA 59.807 40.000 0.00 0.00 0.00 2.29
898 907 1.926511 GCGCTTGGAGGGTGATTGTG 61.927 60.000 0.00 0.00 0.00 3.33
927 936 3.213506 TGACTCTAGCAAGCAAGCAAAA 58.786 40.909 3.19 0.00 36.85 2.44
928 937 2.849942 TGACTCTAGCAAGCAAGCAAA 58.150 42.857 3.19 0.00 36.85 3.68
929 938 2.549064 TGACTCTAGCAAGCAAGCAA 57.451 45.000 3.19 0.00 36.85 3.91
970 979 2.131854 TCTCCTCTCACTAGCTAGCCT 58.868 52.381 20.91 0.00 0.00 4.58
971 980 2.649531 TCTCCTCTCACTAGCTAGCC 57.350 55.000 20.91 0.00 0.00 3.93
972 981 5.046591 TCTCTATCTCCTCTCACTAGCTAGC 60.047 48.000 20.91 6.62 0.00 3.42
1129 1138 2.194859 AGGTAGAGGTACGGAGAGTGA 58.805 52.381 0.00 0.00 0.00 3.41
1130 1139 2.713863 AGGTAGAGGTACGGAGAGTG 57.286 55.000 0.00 0.00 0.00 3.51
1131 1140 2.437651 GGTAGGTAGAGGTACGGAGAGT 59.562 54.545 0.00 0.00 0.00 3.24
1132 1141 2.705127 AGGTAGGTAGAGGTACGGAGAG 59.295 54.545 0.00 0.00 0.00 3.20
1133 1142 2.769209 AGGTAGGTAGAGGTACGGAGA 58.231 52.381 0.00 0.00 0.00 3.71
1134 1143 3.212685 CAAGGTAGGTAGAGGTACGGAG 58.787 54.545 0.00 0.00 0.00 4.63
1135 1144 2.092212 CCAAGGTAGGTAGAGGTACGGA 60.092 54.545 0.00 0.00 0.00 4.69
1136 1145 2.305009 CCAAGGTAGGTAGAGGTACGG 58.695 57.143 0.00 0.00 0.00 4.02
1137 1146 3.010200 ACCAAGGTAGGTAGAGGTACG 57.990 52.381 0.00 0.00 40.98 3.67
1138 1147 6.838090 AGAATAACCAAGGTAGGTAGAGGTAC 59.162 42.308 0.00 0.00 42.25 3.34
1139 1148 6.837568 CAGAATAACCAAGGTAGGTAGAGGTA 59.162 42.308 0.00 0.00 42.25 3.08
1140 1149 5.661759 CAGAATAACCAAGGTAGGTAGAGGT 59.338 44.000 0.00 0.00 42.25 3.85
1141 1150 5.661759 ACAGAATAACCAAGGTAGGTAGAGG 59.338 44.000 0.00 0.00 42.25 3.69
1180 1189 4.907262 CGCACGCGCATGATGTCG 62.907 66.667 8.08 0.00 38.40 4.35
1181 1190 2.402830 CTACGCACGCGCATGATGTC 62.403 60.000 8.08 0.00 44.19 3.06
1256 1269 9.128107 CTCAAAGTAAATTGCAAATTCATACGT 57.872 29.630 1.71 0.00 0.00 3.57
1257 1270 8.103924 GCTCAAAGTAAATTGCAAATTCATACG 58.896 33.333 1.71 0.00 0.00 3.06
1258 1271 8.382875 GGCTCAAAGTAAATTGCAAATTCATAC 58.617 33.333 1.71 3.01 0.00 2.39
1259 1272 8.093307 TGGCTCAAAGTAAATTGCAAATTCATA 58.907 29.630 1.71 0.00 0.00 2.15
1260 1273 6.935771 TGGCTCAAAGTAAATTGCAAATTCAT 59.064 30.769 1.71 0.00 0.00 2.57
1286 1299 2.878580 TGACAAAAGTTGTGCAGCAAG 58.121 42.857 0.00 0.00 45.52 4.01
1349 1373 1.225704 GAGCACAGGGGAGGAATGG 59.774 63.158 0.00 0.00 0.00 3.16
1418 1443 2.977580 GGGGACGGAGGGAGTATAATTT 59.022 50.000 0.00 0.00 0.00 1.82
1434 1459 1.035932 TCGATCAAGAGGACGGGGAC 61.036 60.000 0.00 0.00 0.00 4.46
1435 1460 0.106167 ATCGATCAAGAGGACGGGGA 60.106 55.000 0.00 0.00 0.00 4.81
1437 1462 0.039978 CGATCGATCAAGAGGACGGG 60.040 60.000 24.40 0.96 0.00 5.28
1459 1499 5.624344 ACAGATGAAACATGCTTCTTGAG 57.376 39.130 10.07 2.14 0.00 3.02
1548 1589 1.937362 GCGACAACAACGTGCCAAC 60.937 57.895 0.00 0.00 0.00 3.77
1679 1731 0.990374 AGGAGAAGTGCCAAGCTGAT 59.010 50.000 0.00 0.00 0.00 2.90
1690 1747 4.640647 AGCAAAACGAGAAAAAGGAGAAGT 59.359 37.500 0.00 0.00 0.00 3.01
1696 1753 4.489679 AGCTAGCAAAACGAGAAAAAGG 57.510 40.909 18.83 0.00 0.00 3.11
1729 1791 0.306840 GTGATCAGCACATGCATCGG 59.693 55.000 6.64 0.00 46.91 4.18
1730 1792 3.819919 GTGATCAGCACATGCATCG 57.180 52.632 6.64 0.00 46.91 3.84
1843 1905 6.078664 CACAGGATATTCCCTCCTAGTAGTT 58.921 44.000 0.00 0.00 41.29 2.24
1844 1906 5.136392 ACACAGGATATTCCCTCCTAGTAGT 59.864 44.000 0.00 0.00 41.29 2.73
1845 1907 5.646215 ACACAGGATATTCCCTCCTAGTAG 58.354 45.833 0.00 0.00 41.29 2.57
1846 1908 5.681494 ACACAGGATATTCCCTCCTAGTA 57.319 43.478 0.00 0.00 41.29 1.82
1887 1952 9.300681 TGTTGAGAATCTCCAGTTCATTAATTT 57.699 29.630 7.91 0.00 34.92 1.82
1895 1960 6.867662 TCTTTTGTTGAGAATCTCCAGTTC 57.132 37.500 7.91 0.00 34.92 3.01
1908 1981 6.597832 TCTTTCAGGGTTTTCTTTTGTTGA 57.402 33.333 0.00 0.00 0.00 3.18
1909 1982 5.291858 GCTCTTTCAGGGTTTTCTTTTGTTG 59.708 40.000 0.00 0.00 0.00 3.33
1910 1983 5.419542 GCTCTTTCAGGGTTTTCTTTTGTT 58.580 37.500 0.00 0.00 0.00 2.83
1911 1984 4.440112 CGCTCTTTCAGGGTTTTCTTTTGT 60.440 41.667 0.00 0.00 0.00 2.83
1912 1985 4.044426 CGCTCTTTCAGGGTTTTCTTTTG 58.956 43.478 0.00 0.00 0.00 2.44
1913 1986 3.699538 ACGCTCTTTCAGGGTTTTCTTTT 59.300 39.130 0.00 0.00 45.95 2.27
1914 1987 3.288092 ACGCTCTTTCAGGGTTTTCTTT 58.712 40.909 0.00 0.00 45.95 2.52
1917 1990 3.400255 ACTACGCTCTTTCAGGGTTTTC 58.600 45.455 0.00 0.00 45.95 2.29
1932 2005 1.143305 TCGGCGAGATACTACTACGC 58.857 55.000 4.99 0.00 46.79 4.42
1950 2023 6.399354 GCAAATCGAGTTTCAGCTTCAAAATC 60.399 38.462 0.00 5.60 0.00 2.17
1990 2063 2.559440 TGTTGCTGGCAAATTTTGTCC 58.441 42.857 11.02 12.03 37.70 4.02
2000 2073 1.979855 AGTACATGTTGTTGCTGGCA 58.020 45.000 2.30 0.00 0.00 4.92
2012 2085 3.782046 CGTGGGAAGTTCCTAGTACATG 58.218 50.000 21.25 11.57 36.57 3.21
2014 2087 1.547372 GCGTGGGAAGTTCCTAGTACA 59.453 52.381 21.25 7.73 36.57 2.90
2039 2127 2.413837 CGGAGAATGTCGGTCTGTTTT 58.586 47.619 0.00 0.00 0.00 2.43
2074 2162 3.479269 CTTTCGGACGAGCCACGC 61.479 66.667 0.00 0.00 46.94 5.34
2122 2210 1.781555 CAAGCTGCAGGTACGAACG 59.218 57.895 20.51 0.04 0.00 3.95
2124 2212 3.966215 GCAAGCTGCAGGTACGAA 58.034 55.556 20.51 0.00 44.26 3.85
2162 2253 1.153784 GCACGTTGCCATGATTGGG 60.154 57.895 0.00 0.00 43.84 4.12
2207 2298 0.036671 ACGCCCTAACACTAACAGCC 60.037 55.000 0.00 0.00 0.00 4.85
2356 2453 5.949952 TGCTAGTACCTCTTGATCACAACTA 59.050 40.000 0.00 0.00 32.27 2.24
2423 2520 6.035112 GCTTTTTGCACTGCTAGTAGTAGTAG 59.965 42.308 19.04 18.15 39.17 2.57
2424 2521 5.867716 GCTTTTTGCACTGCTAGTAGTAGTA 59.132 40.000 19.04 3.91 39.17 1.82
2530 2628 4.387598 CAGGCAGATTAGAAAGGAGATGG 58.612 47.826 0.00 0.00 0.00 3.51
2661 2788 7.715686 TCCAGTGATGTGACATAGTAGTAGTAG 59.284 40.741 0.00 0.00 0.00 2.57
2712 2863 2.478134 GGATATGCATGAACGTGAGAGC 59.522 50.000 10.16 0.00 0.00 4.09
2719 2870 1.802960 GCCTCTGGATATGCATGAACG 59.197 52.381 10.16 0.00 0.00 3.95
2743 2894 1.269413 CCACAGCCAGCACAAAAGAAG 60.269 52.381 0.00 0.00 0.00 2.85
2921 3154 5.977725 GGTGATACACTCTAGTACGTACGTA 59.022 44.000 23.60 23.60 34.40 3.57
2922 3155 4.806247 GGTGATACACTCTAGTACGTACGT 59.194 45.833 25.98 25.98 34.40 3.57
2923 3156 4.805719 TGGTGATACACTCTAGTACGTACG 59.194 45.833 19.49 15.01 34.40 3.67
2931 3164 6.929049 TCTTTGTGTTTGGTGATACACTCTAG 59.071 38.462 0.00 0.00 43.82 2.43
2934 3167 5.758296 TCTCTTTGTGTTTGGTGATACACTC 59.242 40.000 0.00 0.00 43.82 3.51
2994 3234 0.099436 GCTATGCTGCAAAGGGAACG 59.901 55.000 6.36 0.00 0.00 3.95
3021 3261 1.134759 CAGCTCACCTCATGACCTCAG 60.135 57.143 0.00 0.00 32.37 3.35
3023 3263 0.461693 GCAGCTCACCTCATGACCTC 60.462 60.000 0.00 0.00 32.37 3.85
3030 3270 1.405105 GTTGTTTTGCAGCTCACCTCA 59.595 47.619 0.00 0.00 0.00 3.86
3050 3290 7.736447 AACAGAGACAGAGAAAACATTAAGG 57.264 36.000 0.00 0.00 0.00 2.69
3190 3434 1.819928 TGTGTGTGCTGAGTTTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
3191 3435 2.097954 ACATGTGTGTGCTGAGTTTGTG 59.902 45.455 0.00 0.00 37.14 3.33
3192 3436 2.368439 ACATGTGTGTGCTGAGTTTGT 58.632 42.857 0.00 0.00 37.14 2.83
3216 3460 3.118956 CCTGATCCAGGCGAGGTAATATC 60.119 52.174 0.00 0.00 45.13 1.63
3281 3546 5.414454 TGTAACCTGCCATTGATTTCTGTAC 59.586 40.000 0.00 0.00 0.00 2.90
3283 3548 4.406456 TGTAACCTGCCATTGATTTCTGT 58.594 39.130 0.00 0.00 0.00 3.41
3318 3583 0.250727 TGCCCAAGTTACAGCCTGAC 60.251 55.000 0.00 0.00 0.00 3.51
3340 3606 7.381766 TCATTGTTTGGATAGACATGTGAAG 57.618 36.000 1.15 0.00 0.00 3.02
3359 3625 3.814283 GGATCTGGAGCTAGCTTTCATTG 59.186 47.826 20.42 9.75 0.00 2.82
3520 3849 2.715046 TCCTCCTGCATTGACACAATC 58.285 47.619 0.00 0.00 0.00 2.67
3521 3850 2.885135 TCCTCCTGCATTGACACAAT 57.115 45.000 0.00 0.00 0.00 2.71
3549 3878 1.603236 CTTCGAGCAGCTCCTCCAGT 61.603 60.000 17.16 0.00 0.00 4.00
3588 3917 1.750018 CGGCTTGTGATGGATGCCA 60.750 57.895 0.00 0.00 43.38 4.92
3661 3991 1.370609 TGGCGTTCGTTTTCAGACAA 58.629 45.000 0.00 0.00 0.00 3.18
3679 4009 2.352421 CCTGAAGCAAGCAAGGAACATG 60.352 50.000 0.00 0.00 0.00 3.21
3744 4075 0.953471 CCACGGCCTTGTCGATGAAA 60.953 55.000 8.63 0.00 33.65 2.69
3774 4105 3.185365 CGCGCGCTGGTGTTGATA 61.185 61.111 30.48 0.00 0.00 2.15
3848 4179 5.363868 TCAGGTTCAGGGTCAGAATATGTAG 59.636 44.000 0.00 0.00 0.00 2.74
3889 4228 3.857052 TCGGTGAGACGCAGAATTTTAT 58.143 40.909 0.00 0.00 0.00 1.40
3905 4244 3.809832 AGAAACAAACAGTCTCATCGGTG 59.190 43.478 0.00 0.00 0.00 4.94
3919 4258 4.569162 CACGTAGTCCTGAACAGAAACAAA 59.431 41.667 3.19 0.00 41.61 2.83
3929 4268 1.547372 GGTAAGGCACGTAGTCCTGAA 59.453 52.381 4.25 0.00 41.61 3.02
3981 4320 1.035932 GCCCTATCTCCGCCGCTATA 61.036 60.000 0.00 0.00 0.00 1.31
4018 4357 2.974698 GCTGCAGCCACAACGTCT 60.975 61.111 28.76 0.00 34.31 4.18
4110 4457 2.308866 ACGGAAACCCCTTCATCAATCT 59.691 45.455 0.00 0.00 35.55 2.40
4209 4560 7.769044 GTCAGGTTTTACAATATCCTTGAGCTA 59.231 37.037 0.00 0.00 0.00 3.32
4245 4596 1.205893 GGCGATGCTCTAATAGGGAGG 59.794 57.143 0.00 0.00 0.00 4.30
4299 4656 4.970860 ATATTGACTGATACCAGCAGCT 57.029 40.909 0.00 0.00 44.16 4.24
4322 4682 7.762159 GGATTCACAACCTTGAAAAACTAACAA 59.238 33.333 0.00 0.00 38.95 2.83
4345 4705 9.330063 CTATAGTACATGTTGTTGTCAATGGAT 57.670 33.333 2.30 0.00 35.92 3.41
4394 4754 5.105023 CCTCTGGATTCAATTCTCAGTCTGA 60.105 44.000 1.78 1.78 0.00 3.27
4404 4764 4.895297 ACACAAACACCTCTGGATTCAATT 59.105 37.500 0.00 0.00 0.00 2.32
4413 4773 6.458342 GGTTTAGAGAAACACAAACACCTCTG 60.458 42.308 0.00 0.00 45.78 3.35
4422 4782 5.771165 GGGGTAATGGTTTAGAGAAACACAA 59.229 40.000 3.23 0.00 45.78 3.33
4476 4837 3.508793 CCAAGTGAAAACCAGATGCTGAT 59.491 43.478 0.00 0.00 32.44 2.90
4478 4839 2.624838 ACCAAGTGAAAACCAGATGCTG 59.375 45.455 0.00 0.00 0.00 4.41
4479 4840 2.949447 ACCAAGTGAAAACCAGATGCT 58.051 42.857 0.00 0.00 0.00 3.79
4481 4842 6.340522 AGAAAAACCAAGTGAAAACCAGATG 58.659 36.000 0.00 0.00 0.00 2.90
4484 4845 9.981114 ATATAAGAAAAACCAAGTGAAAACCAG 57.019 29.630 0.00 0.00 0.00 4.00
4580 4942 4.789012 ACCGTTCGGTTACAATCTTCTA 57.211 40.909 11.27 0.00 34.35 2.10
4581 4943 3.672767 ACCGTTCGGTTACAATCTTCT 57.327 42.857 11.27 0.00 34.35 2.85
4582 4944 4.236935 TGTACCGTTCGGTTACAATCTTC 58.763 43.478 21.64 3.66 39.52 2.87
4629 8284 1.684248 GCCTCCATGGTGCTCATCTTT 60.684 52.381 12.58 0.00 38.35 2.52
4679 8334 9.719355 GTATTGGGAAAAGGTTTCAAAATGTAT 57.281 29.630 3.35 0.00 0.00 2.29
4688 8343 7.088272 GTGTATGTGTATTGGGAAAAGGTTTC 58.912 38.462 0.00 0.00 0.00 2.78
4692 8347 4.401202 GGGTGTATGTGTATTGGGAAAAGG 59.599 45.833 0.00 0.00 0.00 3.11
4698 8354 5.690865 ACATTAGGGTGTATGTGTATTGGG 58.309 41.667 0.00 0.00 33.90 4.12
4780 8436 6.751514 TGAACAGTGTATGTGTTGAAAAGT 57.248 33.333 0.00 0.00 43.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.