Multiple sequence alignment - TraesCS1B01G172700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G172700 chr1B 100.000 4255 0 0 1 4255 308008424 308012678 0.000000e+00 7858.0
1 TraesCS1B01G172700 chr1D 94.089 1827 62 16 742 2544 214822783 214824587 0.000000e+00 2734.0
2 TraesCS1B01G172700 chr1D 92.824 1087 53 10 2599 3684 214824928 214825990 0.000000e+00 1552.0
3 TraesCS1B01G172700 chr1D 91.892 407 28 2 1 407 214822384 214822785 7.990000e-157 564.0
4 TraesCS1B01G172700 chr1D 90.452 199 17 2 4057 4255 214828736 214828932 1.170000e-65 261.0
5 TraesCS1B01G172700 chr1D 90.751 173 16 0 3668 3840 214826019 214826191 9.200000e-57 231.0
6 TraesCS1B01G172700 chr1D 89.655 145 12 2 3903 4044 214828244 214828388 9.400000e-42 182.0
7 TraesCS1B01G172700 chr1D 86.806 144 18 1 407 549 418300553 418300696 4.400000e-35 159.0
8 TraesCS1B01G172700 chr1D 95.775 71 3 0 3853 3923 214826175 214826245 9.670000e-22 115.0
9 TraesCS1B01G172700 chr1A 93.988 1730 68 17 822 2543 273507775 273509476 0.000000e+00 2586.0
10 TraesCS1B01G172700 chr1A 92.810 1516 63 14 1035 2543 273461590 273463066 0.000000e+00 2154.0
11 TraesCS1B01G172700 chr1A 92.875 1193 66 10 2654 3840 273511166 273512345 0.000000e+00 1714.0
12 TraesCS1B01G172700 chr1A 97.778 225 4 1 822 1046 273460536 273460759 1.860000e-103 387.0
13 TraesCS1B01G172700 chr1A 92.544 228 17 0 101 328 273458841 273459068 1.140000e-85 327.0
14 TraesCS1B01G172700 chr1A 92.105 228 16 1 101 328 273506080 273506305 1.910000e-83 320.0
15 TraesCS1B01G172700 chr1A 92.381 105 8 0 1 105 273450178 273450282 2.650000e-32 150.0
16 TraesCS1B01G172700 chr1A 95.455 88 3 1 321 407 273507546 273507633 5.740000e-29 139.0
17 TraesCS1B01G172700 chr1A 94.915 59 3 0 3860 3918 273512336 273512394 4.530000e-15 93.5
18 TraesCS1B01G172700 chr5A 84.814 349 37 5 404 736 701968850 701968502 1.900000e-88 337.0
19 TraesCS1B01G172700 chr5A 83.239 352 41 7 407 741 297712992 297712642 1.490000e-79 307.0
20 TraesCS1B01G172700 chr5A 82.133 347 45 7 407 737 244358103 244357758 9.010000e-72 281.0
21 TraesCS1B01G172700 chr6A 84.419 353 35 7 407 741 449696150 449695800 3.170000e-86 329.0
22 TraesCS1B01G172700 chr6A 82.521 349 42 7 407 737 64265123 64264776 5.380000e-74 289.0
23 TraesCS1B01G172700 chr3D 83.429 350 42 5 407 740 505421087 505420738 1.150000e-80 311.0
24 TraesCS1B01G172700 chr3D 84.112 107 12 4 3975 4078 607879334 607879438 9.740000e-17 99.0
25 TraesCS1B01G172700 chr2D 82.997 347 42 3 407 737 21060542 21060197 8.940000e-77 298.0
26 TraesCS1B01G172700 chr2D 81.586 353 45 6 407 743 434334108 434334456 1.510000e-69 274.0
27 TraesCS1B01G172700 chr2D 82.803 314 37 4 407 704 10279224 10279536 9.070000e-67 265.0
28 TraesCS1B01G172700 chr6D 82.521 349 43 3 407 737 41159215 41159563 1.500000e-74 291.0
29 TraesCS1B01G172700 chr4A 82.471 348 37 9 406 737 703726517 703726856 2.500000e-72 283.0
30 TraesCS1B01G172700 chr7D 80.422 332 41 11 408 737 112165837 112165528 9.200000e-57 231.0
31 TraesCS1B01G172700 chr7D 82.206 281 32 5 407 670 13654116 13653837 4.280000e-55 226.0
32 TraesCS1B01G172700 chr7D 84.615 104 11 3 3977 4078 363295777 363295677 9.740000e-17 99.0
33 TraesCS1B01G172700 chr7A 78.979 333 48 9 406 737 671526757 671526446 1.550000e-49 207.0
34 TraesCS1B01G172700 chr7A 83.486 109 12 5 3974 4078 696632811 696632917 3.500000e-16 97.1
35 TraesCS1B01G172700 chr3A 87.952 166 19 1 407 571 682002683 682002518 1.210000e-45 195.0
36 TraesCS1B01G172700 chr3B 85.075 134 19 1 600 733 3272822 3272954 7.420000e-28 135.0
37 TraesCS1B01G172700 chr3B 86.000 100 10 4 3982 4079 603869512 603869415 2.090000e-18 104.0
38 TraesCS1B01G172700 chr3B 84.112 107 13 4 3974 4078 288379056 288379160 2.710000e-17 100.0
39 TraesCS1B01G172700 chr5D 86.275 102 6 7 3982 4078 558601289 558601191 2.090000e-18 104.0
40 TraesCS1B01G172700 chr7B 85.714 98 10 3 3983 4078 318905400 318905495 2.710000e-17 100.0
41 TraesCS1B01G172700 chr2B 85.567 97 12 2 3982 4078 178863031 178862937 2.710000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G172700 chr1B 308008424 308012678 4254 False 7858.000000 7858 100.000000 1 4255 1 chr1B.!!$F1 4254
1 TraesCS1B01G172700 chr1D 214822384 214828932 6548 False 805.571429 2734 92.205429 1 4255 7 chr1D.!!$F2 4254
2 TraesCS1B01G172700 chr1A 273506080 273512394 6314 False 970.500000 2586 93.867600 101 3918 5 chr1A.!!$F3 3817
3 TraesCS1B01G172700 chr1A 273458841 273463066 4225 False 956.000000 2154 94.377333 101 2543 3 chr1A.!!$F2 2442

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 2042 0.036010 ACTGTACACCAGCCATCTGC 60.036 55.0 0.0 0.0 45.68 4.26 F
1915 4086 0.105964 TCCTGGCGTGTATGTATGGC 59.894 55.0 0.0 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1921 4092 0.034337 TTACCAACCGACCTGCTGTC 59.966 55.0 0.0 0.0 40.81 3.51 R
3717 7542 0.179073 ATCCACACGTCTGCCATAGC 60.179 55.0 0.0 0.0 40.48 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 8.520351 GGTTTAAATAATGTTGCCTTGTACTCT 58.480 33.333 0.00 0.00 0.00 3.24
45 46 6.927294 ATAATGTTGCCTTGTACTCTAAGC 57.073 37.500 0.00 0.00 0.00 3.09
51 52 2.102757 GCCTTGTACTCTAAGCCTACCC 59.897 54.545 0.00 0.00 0.00 3.69
52 53 2.699321 CCTTGTACTCTAAGCCTACCCC 59.301 54.545 0.00 0.00 0.00 4.95
53 54 3.630311 CCTTGTACTCTAAGCCTACCCCT 60.630 52.174 0.00 0.00 0.00 4.79
59 60 2.175931 CTCTAAGCCTACCCCTCTCTCA 59.824 54.545 0.00 0.00 0.00 3.27
67 68 4.290942 CCTACCCCTCTCTCATGTACTTT 58.709 47.826 0.00 0.00 0.00 2.66
80 81 9.517609 CTCTCATGTACTTTTATATATACCCGC 57.482 37.037 0.00 0.00 0.00 6.13
93 94 9.811995 TTATATATACCCGCATGAGTTCAATAC 57.188 33.333 0.00 0.00 0.00 1.89
186 187 1.202582 AGTAGCAACAGTAGAGCCACG 59.797 52.381 0.00 0.00 0.00 4.94
202 203 2.029666 CGACCTCGATGATGGCCC 59.970 66.667 0.00 0.00 43.02 5.80
212 213 3.092511 GATGGCCCTGCTCCCAGA 61.093 66.667 0.00 0.00 41.77 3.86
287 288 0.751643 CCATAGGGGTTTGCTTCCGG 60.752 60.000 0.00 0.00 0.00 5.14
315 316 1.394917 GCAACACTAACATGGAGCTCG 59.605 52.381 7.83 0.00 0.00 5.03
334 1583 2.970639 CCACCGGAGACACGACAT 59.029 61.111 9.46 0.00 35.47 3.06
404 1654 2.198287 GGCCTCTATACACCGCCGA 61.198 63.158 0.00 0.00 0.00 5.54
405 1655 1.533469 GGCCTCTATACACCGCCGAT 61.533 60.000 0.00 0.00 0.00 4.18
406 1656 0.388649 GCCTCTATACACCGCCGATG 60.389 60.000 0.00 0.00 0.00 3.84
407 1657 0.959553 CCTCTATACACCGCCGATGT 59.040 55.000 0.00 0.00 0.00 3.06
408 1658 1.335964 CCTCTATACACCGCCGATGTG 60.336 57.143 0.00 0.00 39.63 3.21
409 1659 1.607148 CTCTATACACCGCCGATGTGA 59.393 52.381 0.00 0.00 37.18 3.58
410 1660 2.025898 TCTATACACCGCCGATGTGAA 58.974 47.619 0.00 0.00 37.18 3.18
411 1661 2.427812 TCTATACACCGCCGATGTGAAA 59.572 45.455 0.00 0.00 37.18 2.69
412 1662 2.102070 ATACACCGCCGATGTGAAAA 57.898 45.000 0.00 0.00 37.18 2.29
413 1663 2.102070 TACACCGCCGATGTGAAAAT 57.898 45.000 0.00 0.00 37.18 1.82
414 1664 1.243902 ACACCGCCGATGTGAAAATT 58.756 45.000 0.48 0.00 37.18 1.82
415 1665 2.428491 ACACCGCCGATGTGAAAATTA 58.572 42.857 0.48 0.00 37.18 1.40
416 1666 2.814919 ACACCGCCGATGTGAAAATTAA 59.185 40.909 0.48 0.00 37.18 1.40
417 1667 3.168193 CACCGCCGATGTGAAAATTAAC 58.832 45.455 0.00 0.00 35.74 2.01
418 1668 2.814919 ACCGCCGATGTGAAAATTAACA 59.185 40.909 0.00 0.00 0.00 2.41
419 1669 3.253677 ACCGCCGATGTGAAAATTAACAA 59.746 39.130 0.00 0.00 0.00 2.83
420 1670 4.230657 CCGCCGATGTGAAAATTAACAAA 58.769 39.130 0.00 0.00 0.00 2.83
421 1671 4.681942 CCGCCGATGTGAAAATTAACAAAA 59.318 37.500 0.00 0.00 0.00 2.44
422 1672 5.347364 CCGCCGATGTGAAAATTAACAAAAT 59.653 36.000 0.00 0.00 0.00 1.82
423 1673 6.128688 CCGCCGATGTGAAAATTAACAAAATT 60.129 34.615 0.00 0.00 0.00 1.82
424 1674 6.731505 CGCCGATGTGAAAATTAACAAAATTG 59.268 34.615 0.00 0.00 0.00 2.32
425 1675 7.014702 GCCGATGTGAAAATTAACAAAATTGG 58.985 34.615 0.00 0.00 0.00 3.16
426 1676 7.014702 CCGATGTGAAAATTAACAAAATTGGC 58.985 34.615 0.00 0.00 0.00 4.52
427 1677 7.014702 CGATGTGAAAATTAACAAAATTGGCC 58.985 34.615 0.00 0.00 0.00 5.36
428 1678 6.625873 TGTGAAAATTAACAAAATTGGCCC 57.374 33.333 0.00 0.00 0.00 5.80
429 1679 6.360618 TGTGAAAATTAACAAAATTGGCCCT 58.639 32.000 0.00 0.00 0.00 5.19
430 1680 6.830838 TGTGAAAATTAACAAAATTGGCCCTT 59.169 30.769 0.00 0.00 0.00 3.95
431 1681 7.340487 TGTGAAAATTAACAAAATTGGCCCTTT 59.660 29.630 0.00 0.00 0.00 3.11
432 1682 8.194104 GTGAAAATTAACAAAATTGGCCCTTTT 58.806 29.630 0.00 3.55 0.00 2.27
433 1683 8.409371 TGAAAATTAACAAAATTGGCCCTTTTC 58.591 29.630 0.00 13.42 33.42 2.29
434 1684 6.892658 AATTAACAAAATTGGCCCTTTTCC 57.107 33.333 0.00 0.00 0.00 3.13
435 1685 2.949177 ACAAAATTGGCCCTTTTCCC 57.051 45.000 0.00 0.00 0.00 3.97
436 1686 2.131023 ACAAAATTGGCCCTTTTCCCA 58.869 42.857 0.00 0.00 0.00 4.37
437 1687 2.511637 ACAAAATTGGCCCTTTTCCCAA 59.488 40.909 0.00 0.00 44.51 4.12
438 1688 3.053320 ACAAAATTGGCCCTTTTCCCAAA 60.053 39.130 0.00 0.00 43.70 3.28
439 1689 2.949177 AATTGGCCCTTTTCCCAAAC 57.051 45.000 0.00 0.00 43.70 2.93
440 1690 2.116869 ATTGGCCCTTTTCCCAAACT 57.883 45.000 0.00 0.00 43.70 2.66
441 1691 1.886422 TTGGCCCTTTTCCCAAACTT 58.114 45.000 0.00 0.00 38.12 2.66
442 1692 1.419381 TGGCCCTTTTCCCAAACTTC 58.581 50.000 0.00 0.00 0.00 3.01
443 1693 1.343478 TGGCCCTTTTCCCAAACTTCA 60.343 47.619 0.00 0.00 0.00 3.02
444 1694 1.765904 GGCCCTTTTCCCAAACTTCAA 59.234 47.619 0.00 0.00 0.00 2.69
445 1695 2.484770 GGCCCTTTTCCCAAACTTCAAC 60.485 50.000 0.00 0.00 0.00 3.18
446 1696 2.169561 GCCCTTTTCCCAAACTTCAACA 59.830 45.455 0.00 0.00 0.00 3.33
447 1697 3.792401 CCCTTTTCCCAAACTTCAACAC 58.208 45.455 0.00 0.00 0.00 3.32
448 1698 3.443976 CCTTTTCCCAAACTTCAACACG 58.556 45.455 0.00 0.00 0.00 4.49
449 1699 3.129638 CCTTTTCCCAAACTTCAACACGA 59.870 43.478 0.00 0.00 0.00 4.35
450 1700 4.381079 CCTTTTCCCAAACTTCAACACGAA 60.381 41.667 0.00 0.00 0.00 3.85
451 1701 4.785511 TTTCCCAAACTTCAACACGAAA 57.214 36.364 0.00 0.00 31.71 3.46
452 1702 4.993029 TTCCCAAACTTCAACACGAAAT 57.007 36.364 0.00 0.00 31.71 2.17
453 1703 4.300189 TCCCAAACTTCAACACGAAATG 57.700 40.909 0.00 0.00 31.71 2.32
454 1704 3.067461 TCCCAAACTTCAACACGAAATGG 59.933 43.478 0.00 0.00 34.20 3.16
455 1705 3.181480 CCCAAACTTCAACACGAAATGGT 60.181 43.478 0.00 0.00 33.27 3.55
456 1706 4.041723 CCAAACTTCAACACGAAATGGTC 58.958 43.478 0.00 0.00 31.73 4.02
457 1707 3.982576 AACTTCAACACGAAATGGTCC 57.017 42.857 0.00 0.00 31.71 4.46
458 1708 2.227194 ACTTCAACACGAAATGGTCCC 58.773 47.619 0.00 0.00 31.71 4.46
459 1709 2.226330 CTTCAACACGAAATGGTCCCA 58.774 47.619 0.00 0.00 31.71 4.37
460 1710 1.890876 TCAACACGAAATGGTCCCAG 58.109 50.000 0.00 0.00 0.00 4.45
461 1711 1.142060 TCAACACGAAATGGTCCCAGT 59.858 47.619 0.00 0.00 0.00 4.00
462 1712 1.535462 CAACACGAAATGGTCCCAGTC 59.465 52.381 0.00 0.00 0.00 3.51
463 1713 1.056660 ACACGAAATGGTCCCAGTCT 58.943 50.000 0.00 0.00 0.00 3.24
464 1714 2.253610 ACACGAAATGGTCCCAGTCTA 58.746 47.619 0.00 0.00 0.00 2.59
465 1715 2.635915 ACACGAAATGGTCCCAGTCTAA 59.364 45.455 0.00 0.00 0.00 2.10
466 1716 3.071892 ACACGAAATGGTCCCAGTCTAAA 59.928 43.478 0.00 0.00 0.00 1.85
467 1717 4.069304 CACGAAATGGTCCCAGTCTAAAA 58.931 43.478 0.00 0.00 0.00 1.52
468 1718 4.517453 CACGAAATGGTCCCAGTCTAAAAA 59.483 41.667 0.00 0.00 0.00 1.94
469 1719 5.183140 CACGAAATGGTCCCAGTCTAAAAAT 59.817 40.000 0.00 0.00 0.00 1.82
470 1720 6.373216 CACGAAATGGTCCCAGTCTAAAAATA 59.627 38.462 0.00 0.00 0.00 1.40
471 1721 7.067008 CACGAAATGGTCCCAGTCTAAAAATAT 59.933 37.037 0.00 0.00 0.00 1.28
472 1722 7.614192 ACGAAATGGTCCCAGTCTAAAAATATT 59.386 33.333 0.00 0.00 0.00 1.28
473 1723 8.466798 CGAAATGGTCCCAGTCTAAAAATATTT 58.533 33.333 0.00 0.00 0.00 1.40
474 1724 9.803315 GAAATGGTCCCAGTCTAAAAATATTTC 57.197 33.333 0.10 0.00 0.00 2.17
475 1725 8.893563 AATGGTCCCAGTCTAAAAATATTTCA 57.106 30.769 0.10 0.00 0.00 2.69
476 1726 9.492730 AATGGTCCCAGTCTAAAAATATTTCAT 57.507 29.630 0.10 0.00 0.00 2.57
478 1728 9.983024 TGGTCCCAGTCTAAAAATATTTCATAA 57.017 29.630 0.10 0.00 0.00 1.90
492 1742 7.806409 ATATTTCATAAAATGGCCCTTTTGC 57.194 32.000 24.14 0.00 35.84 3.68
493 1743 4.630644 TTCATAAAATGGCCCTTTTGCA 57.369 36.364 24.14 9.52 31.15 4.08
494 1744 4.840716 TCATAAAATGGCCCTTTTGCAT 57.159 36.364 24.14 11.19 31.15 3.96
495 1745 4.515361 TCATAAAATGGCCCTTTTGCATG 58.485 39.130 24.14 20.10 31.15 4.06
496 1746 4.224594 TCATAAAATGGCCCTTTTGCATGA 59.775 37.500 24.14 21.61 31.15 3.07
497 1747 2.477845 AAATGGCCCTTTTGCATGAC 57.522 45.000 0.00 0.00 0.00 3.06
498 1748 0.247185 AATGGCCCTTTTGCATGACG 59.753 50.000 0.00 0.00 0.00 4.35
499 1749 2.125952 GGCCCTTTTGCATGACGC 60.126 61.111 0.00 0.00 42.89 5.19
500 1750 2.125952 GCCCTTTTGCATGACGCC 60.126 61.111 0.00 0.00 41.33 5.68
501 1751 2.573340 CCCTTTTGCATGACGCCC 59.427 61.111 0.00 0.00 41.33 6.13
502 1752 2.179018 CCTTTTGCATGACGCCCG 59.821 61.111 0.00 0.00 41.33 6.13
503 1753 2.179018 CTTTTGCATGACGCCCGG 59.821 61.111 0.00 0.00 41.33 5.73
504 1754 3.340953 CTTTTGCATGACGCCCGGG 62.341 63.158 19.09 19.09 41.33 5.73
523 1773 2.654802 GCTAGGGCGCCATACTAGA 58.345 57.895 30.84 10.87 37.06 2.43
524 1774 1.187087 GCTAGGGCGCCATACTAGAT 58.813 55.000 30.84 10.87 37.06 1.98
525 1775 2.376109 GCTAGGGCGCCATACTAGATA 58.624 52.381 30.84 9.50 37.06 1.98
526 1776 2.359531 GCTAGGGCGCCATACTAGATAG 59.640 54.545 30.84 18.47 37.06 2.08
527 1777 1.187087 AGGGCGCCATACTAGATAGC 58.813 55.000 30.85 5.70 0.00 2.97
528 1778 0.895530 GGGCGCCATACTAGATAGCA 59.104 55.000 30.85 0.00 0.00 3.49
529 1779 1.482593 GGGCGCCATACTAGATAGCAT 59.517 52.381 30.85 0.00 0.00 3.79
530 1780 2.544685 GGCGCCATACTAGATAGCATG 58.455 52.381 24.80 0.00 0.00 4.06
531 1781 2.166459 GGCGCCATACTAGATAGCATGA 59.834 50.000 24.80 0.00 30.30 3.07
532 1782 3.182967 GCGCCATACTAGATAGCATGAC 58.817 50.000 0.00 0.00 30.30 3.06
533 1783 3.430008 CGCCATACTAGATAGCATGACG 58.570 50.000 0.00 0.00 30.30 4.35
534 1784 3.182967 GCCATACTAGATAGCATGACGC 58.817 50.000 0.00 0.00 42.91 5.19
535 1785 3.775202 CCATACTAGATAGCATGACGCC 58.225 50.000 0.00 0.00 44.04 5.68
536 1786 3.429547 CCATACTAGATAGCATGACGCCC 60.430 52.174 0.00 0.00 44.04 6.13
537 1787 0.969894 ACTAGATAGCATGACGCCCC 59.030 55.000 0.00 0.00 44.04 5.80
538 1788 0.109086 CTAGATAGCATGACGCCCCG 60.109 60.000 0.00 0.00 44.04 5.73
539 1789 1.532604 TAGATAGCATGACGCCCCGG 61.533 60.000 0.00 0.00 44.04 5.73
540 1790 3.883744 GATAGCATGACGCCCCGGG 62.884 68.421 15.80 15.80 44.04 5.73
557 1807 4.301027 GCTAGGGCGCCGTGCTAT 62.301 66.667 30.94 9.80 45.43 2.97
558 1808 2.421739 CTAGGGCGCCGTGCTATT 59.578 61.111 30.94 7.67 45.43 1.73
559 1809 1.227556 CTAGGGCGCCGTGCTATTT 60.228 57.895 30.94 6.26 45.43 1.40
560 1810 1.498865 CTAGGGCGCCGTGCTATTTG 61.499 60.000 30.94 6.71 45.43 2.32
561 1811 2.933878 TAGGGCGCCGTGCTATTTGG 62.934 60.000 30.94 0.00 45.43 3.28
562 1812 4.552745 GGCGCCGTGCTATTTGGC 62.553 66.667 12.58 0.00 45.43 4.52
569 1819 1.002468 CCGTGCTATTTGGCATAGTGC 60.002 52.381 0.00 0.00 44.34 4.40
580 1830 2.983402 GCATAGTGCCATGCTACATG 57.017 50.000 7.55 0.48 46.35 3.21
581 1831 2.224606 GCATAGTGCCATGCTACATGT 58.775 47.619 2.69 2.69 46.35 3.21
582 1832 2.225019 GCATAGTGCCATGCTACATGTC 59.775 50.000 0.00 0.00 46.35 3.06
583 1833 2.223537 TAGTGCCATGCTACATGTCG 57.776 50.000 0.00 0.00 0.00 4.35
584 1834 1.091771 AGTGCCATGCTACATGTCGC 61.092 55.000 15.06 15.06 0.00 5.19
585 1835 1.078567 TGCCATGCTACATGTCGCA 60.079 52.632 25.14 25.14 40.87 5.10
586 1836 0.676151 TGCCATGCTACATGTCGCAA 60.676 50.000 26.42 9.49 39.89 4.85
587 1837 0.248215 GCCATGCTACATGTCGCAAC 60.248 55.000 26.42 16.01 39.89 4.17
588 1838 0.378257 CCATGCTACATGTCGCAACC 59.622 55.000 26.42 0.00 39.89 3.77
589 1839 1.085893 CATGCTACATGTCGCAACCA 58.914 50.000 26.42 5.89 39.89 3.67
590 1840 1.672363 CATGCTACATGTCGCAACCAT 59.328 47.619 26.42 9.49 39.89 3.55
591 1841 1.085893 TGCTACATGTCGCAACCATG 58.914 50.000 21.50 5.87 44.17 3.66
592 1842 0.378257 GCTACATGTCGCAACCATGG 59.622 55.000 16.83 11.19 43.15 3.66
593 1843 0.378257 CTACATGTCGCAACCATGGC 59.622 55.000 13.04 0.00 43.15 4.40
600 1850 3.813596 GCAACCATGGCGTCCTAG 58.186 61.111 13.04 0.00 0.00 3.02
601 1851 1.819632 GCAACCATGGCGTCCTAGG 60.820 63.158 13.04 0.82 0.00 3.02
602 1852 1.819632 CAACCATGGCGTCCTAGGC 60.820 63.158 13.04 0.00 37.19 3.93
614 1864 4.609018 CTAGGCCGGGGCGTCATG 62.609 72.222 15.57 1.26 43.06 3.07
619 1869 4.899239 CCGGGGCGTCATGCTCTC 62.899 72.222 0.00 0.00 46.29 3.20
620 1870 3.842923 CGGGGCGTCATGCTCTCT 61.843 66.667 0.00 0.00 46.29 3.10
621 1871 2.490148 CGGGGCGTCATGCTCTCTA 61.490 63.158 0.00 0.00 46.29 2.43
622 1872 1.810606 CGGGGCGTCATGCTCTCTAT 61.811 60.000 0.00 0.00 46.29 1.98
623 1873 0.037790 GGGGCGTCATGCTCTCTATC 60.038 60.000 0.00 0.00 46.29 2.08
624 1874 0.676184 GGGCGTCATGCTCTCTATCA 59.324 55.000 0.00 0.00 42.52 2.15
625 1875 1.274728 GGGCGTCATGCTCTCTATCAT 59.725 52.381 0.00 0.00 42.52 2.45
626 1876 2.335752 GGCGTCATGCTCTCTATCATG 58.664 52.381 0.00 0.00 45.43 3.07
627 1877 2.335752 GCGTCATGCTCTCTATCATGG 58.664 52.381 0.00 0.00 40.20 3.66
628 1878 2.335752 CGTCATGCTCTCTATCATGGC 58.664 52.381 0.00 0.00 40.74 4.40
629 1879 2.335752 GTCATGCTCTCTATCATGGCG 58.664 52.381 0.00 0.00 40.20 5.69
630 1880 1.077123 CATGCTCTCTATCATGGCGC 58.923 55.000 0.00 0.00 37.13 6.53
631 1881 0.036577 ATGCTCTCTATCATGGCGCC 60.037 55.000 22.73 22.73 0.00 6.53
632 1882 1.375268 GCTCTCTATCATGGCGCCC 60.375 63.158 26.77 6.44 0.00 6.13
633 1883 1.294780 CTCTCTATCATGGCGCCCC 59.705 63.158 26.77 0.00 0.00 5.80
635 1885 1.004080 CTCTATCATGGCGCCCCAG 60.004 63.158 26.77 14.06 46.24 4.45
636 1886 2.670934 CTATCATGGCGCCCCAGC 60.671 66.667 26.77 0.00 46.24 4.85
660 1910 2.257353 GCGTCATGCAAAAGAGGGT 58.743 52.632 0.00 0.00 45.45 4.34
661 1911 0.169009 GCGTCATGCAAAAGAGGGTC 59.831 55.000 0.00 0.00 45.45 4.46
662 1912 1.522668 CGTCATGCAAAAGAGGGTCA 58.477 50.000 0.00 0.00 0.00 4.02
663 1913 2.086869 CGTCATGCAAAAGAGGGTCAT 58.913 47.619 0.00 0.00 0.00 3.06
664 1914 2.489329 CGTCATGCAAAAGAGGGTCATT 59.511 45.455 0.00 0.00 0.00 2.57
665 1915 3.057315 CGTCATGCAAAAGAGGGTCATTT 60.057 43.478 0.00 0.00 0.00 2.32
666 1916 4.559300 CGTCATGCAAAAGAGGGTCATTTT 60.559 41.667 0.00 0.00 0.00 1.82
667 1917 4.687483 GTCATGCAAAAGAGGGTCATTTTG 59.313 41.667 0.00 6.13 45.10 2.44
668 1918 4.344679 TCATGCAAAAGAGGGTCATTTTGT 59.655 37.500 10.91 0.00 44.48 2.83
669 1919 4.057406 TGCAAAAGAGGGTCATTTTGTG 57.943 40.909 10.91 0.00 44.48 3.33
670 1920 3.703556 TGCAAAAGAGGGTCATTTTGTGA 59.296 39.130 10.91 0.00 44.48 3.58
671 1921 4.161189 TGCAAAAGAGGGTCATTTTGTGAA 59.839 37.500 10.91 0.00 44.48 3.18
672 1922 5.115480 GCAAAAGAGGGTCATTTTGTGAAA 58.885 37.500 10.91 0.00 44.48 2.69
673 1923 5.759763 GCAAAAGAGGGTCATTTTGTGAAAT 59.240 36.000 10.91 0.00 44.48 2.17
674 1924 6.928492 GCAAAAGAGGGTCATTTTGTGAAATA 59.072 34.615 10.91 0.00 44.48 1.40
675 1925 7.603784 GCAAAAGAGGGTCATTTTGTGAAATAT 59.396 33.333 10.91 0.00 44.48 1.28
676 1926 9.492973 CAAAAGAGGGTCATTTTGTGAAATATT 57.507 29.630 2.95 0.00 40.09 1.28
679 1929 9.710900 AAGAGGGTCATTTTGTGAAATATTTTC 57.289 29.630 1.43 0.32 38.90 2.29
680 1930 8.869109 AGAGGGTCATTTTGTGAAATATTTTCA 58.131 29.630 1.43 2.91 38.90 2.69
681 1931 9.143631 GAGGGTCATTTTGTGAAATATTTTCAG 57.856 33.333 1.43 0.00 38.90 3.02
682 1932 8.869109 AGGGTCATTTTGTGAAATATTTTCAGA 58.131 29.630 1.43 0.00 38.90 3.27
683 1933 8.925700 GGGTCATTTTGTGAAATATTTTCAGAC 58.074 33.333 1.43 8.34 38.90 3.51
684 1934 9.696917 GGTCATTTTGTGAAATATTTTCAGACT 57.303 29.630 1.43 0.00 38.90 3.24
690 1940 7.849804 TGTGAAATATTTTCAGACTAGAGCC 57.150 36.000 1.43 0.00 0.00 4.70
691 1941 7.394016 TGTGAAATATTTTCAGACTAGAGCCA 58.606 34.615 1.43 0.00 0.00 4.75
692 1942 8.049117 TGTGAAATATTTTCAGACTAGAGCCAT 58.951 33.333 1.43 0.00 0.00 4.40
693 1943 8.897752 GTGAAATATTTTCAGACTAGAGCCATT 58.102 33.333 1.43 0.00 0.00 3.16
694 1944 9.466497 TGAAATATTTTCAGACTAGAGCCATTT 57.534 29.630 1.43 0.00 0.00 2.32
695 1945 9.943163 GAAATATTTTCAGACTAGAGCCATTTC 57.057 33.333 1.43 0.00 0.00 2.17
696 1946 7.721286 ATATTTTCAGACTAGAGCCATTTCG 57.279 36.000 0.00 0.00 0.00 3.46
697 1947 4.537135 TTTCAGACTAGAGCCATTTCGT 57.463 40.909 0.00 0.00 0.00 3.85
698 1948 3.510388 TCAGACTAGAGCCATTTCGTG 57.490 47.619 0.00 0.00 0.00 4.35
699 1949 2.826128 TCAGACTAGAGCCATTTCGTGT 59.174 45.455 0.00 0.00 0.00 4.49
700 1950 3.258372 TCAGACTAGAGCCATTTCGTGTT 59.742 43.478 0.00 0.00 0.00 3.32
701 1951 3.369147 CAGACTAGAGCCATTTCGTGTTG 59.631 47.826 0.00 0.00 0.00 3.33
702 1952 3.258372 AGACTAGAGCCATTTCGTGTTGA 59.742 43.478 0.00 0.00 0.00 3.18
703 1953 3.994392 GACTAGAGCCATTTCGTGTTGAA 59.006 43.478 0.00 0.00 33.85 2.69
704 1954 3.997021 ACTAGAGCCATTTCGTGTTGAAG 59.003 43.478 0.00 0.00 37.99 3.02
705 1955 2.851195 AGAGCCATTTCGTGTTGAAGT 58.149 42.857 0.00 0.00 37.99 3.01
706 1956 2.549754 AGAGCCATTTCGTGTTGAAGTG 59.450 45.455 0.00 0.00 42.29 3.16
707 1957 2.290641 GAGCCATTTCGTGTTGAAGTGT 59.709 45.455 0.57 0.00 41.37 3.55
708 1958 2.290641 AGCCATTTCGTGTTGAAGTGTC 59.709 45.455 0.57 0.00 41.37 3.67
709 1959 2.903678 CCATTTCGTGTTGAAGTGTCG 58.096 47.619 0.57 0.00 41.37 4.35
710 1960 2.349438 CCATTTCGTGTTGAAGTGTCGG 60.349 50.000 0.57 0.00 41.37 4.79
711 1961 2.296831 TTTCGTGTTGAAGTGTCGGA 57.703 45.000 0.00 0.00 37.99 4.55
712 1962 2.296831 TTCGTGTTGAAGTGTCGGAA 57.703 45.000 0.00 0.00 31.44 4.30
713 1963 2.296831 TCGTGTTGAAGTGTCGGAAA 57.703 45.000 0.00 0.00 0.00 3.13
714 1964 2.619147 TCGTGTTGAAGTGTCGGAAAA 58.381 42.857 0.00 0.00 0.00 2.29
715 1965 3.199677 TCGTGTTGAAGTGTCGGAAAAT 58.800 40.909 0.00 0.00 0.00 1.82
716 1966 3.001838 TCGTGTTGAAGTGTCGGAAAATG 59.998 43.478 0.00 0.00 0.00 2.32
717 1967 3.628017 GTGTTGAAGTGTCGGAAAATGG 58.372 45.455 0.00 0.00 0.00 3.16
718 1968 2.034053 TGTTGAAGTGTCGGAAAATGGC 59.966 45.455 0.00 0.00 0.00 4.40
719 1969 1.243902 TGAAGTGTCGGAAAATGGCC 58.756 50.000 0.00 0.00 0.00 5.36
720 1970 1.243902 GAAGTGTCGGAAAATGGCCA 58.756 50.000 8.56 8.56 0.00 5.36
721 1971 1.200020 GAAGTGTCGGAAAATGGCCAG 59.800 52.381 13.05 0.00 0.00 4.85
722 1972 0.110486 AGTGTCGGAAAATGGCCAGT 59.890 50.000 13.05 5.37 0.00 4.00
723 1973 0.958822 GTGTCGGAAAATGGCCAGTT 59.041 50.000 13.79 13.79 0.00 3.16
724 1974 1.339929 GTGTCGGAAAATGGCCAGTTT 59.660 47.619 29.87 29.87 0.00 2.66
725 1975 2.035632 TGTCGGAAAATGGCCAGTTTT 58.964 42.857 29.99 23.97 0.00 2.43
726 1976 2.223923 TGTCGGAAAATGGCCAGTTTTG 60.224 45.455 29.99 24.20 0.00 2.44
727 1977 2.035632 TCGGAAAATGGCCAGTTTTGT 58.964 42.857 29.99 10.59 0.00 2.83
728 1978 2.035321 TCGGAAAATGGCCAGTTTTGTC 59.965 45.455 29.99 18.50 0.00 3.18
729 1979 2.766313 GGAAAATGGCCAGTTTTGTCC 58.234 47.619 29.99 23.13 0.00 4.02
730 1980 2.103941 GGAAAATGGCCAGTTTTGTCCA 59.896 45.455 29.99 0.00 0.00 4.02
731 1981 3.244526 GGAAAATGGCCAGTTTTGTCCAT 60.245 43.478 29.99 8.22 40.77 3.41
734 1984 4.436113 AATGGCCAGTTTTGTCCATTTT 57.564 36.364 13.05 0.00 44.37 1.82
735 1985 3.467374 TGGCCAGTTTTGTCCATTTTC 57.533 42.857 0.00 0.00 0.00 2.29
736 1986 2.768527 TGGCCAGTTTTGTCCATTTTCA 59.231 40.909 0.00 0.00 0.00 2.69
737 1987 3.181467 TGGCCAGTTTTGTCCATTTTCAG 60.181 43.478 0.00 0.00 0.00 3.02
738 1988 2.802247 GCCAGTTTTGTCCATTTTCAGC 59.198 45.455 0.00 0.00 0.00 4.26
739 1989 3.493176 GCCAGTTTTGTCCATTTTCAGCT 60.493 43.478 0.00 0.00 0.00 4.24
740 1990 4.053295 CCAGTTTTGTCCATTTTCAGCTG 58.947 43.478 7.63 7.63 0.00 4.24
792 2042 0.036010 ACTGTACACCAGCCATCTGC 60.036 55.000 0.00 0.00 45.68 4.26
810 2060 1.134220 TGCCCTCCTAATAAAGTGCGG 60.134 52.381 0.00 0.00 0.00 5.69
1231 3393 3.245346 TGGTGATGTCCCCGTGCA 61.245 61.111 0.00 0.00 0.00 4.57
1552 3720 1.385409 GCAACCGTTAACCGTACGTAC 59.615 52.381 15.90 15.90 37.30 3.67
1555 3723 3.734776 ACCGTTAACCGTACGTACTAC 57.265 47.619 22.55 11.49 37.30 2.73
1556 3724 3.332034 ACCGTTAACCGTACGTACTACT 58.668 45.455 22.55 9.38 37.30 2.57
1557 3725 4.497300 ACCGTTAACCGTACGTACTACTA 58.503 43.478 22.55 8.46 37.30 1.82
1558 3726 4.565564 ACCGTTAACCGTACGTACTACTAG 59.434 45.833 22.55 7.30 37.30 2.57
1596 3764 1.737793 GGTCATTTTTCTCGCCGATGT 59.262 47.619 0.00 0.00 0.00 3.06
1770 3938 3.838271 GCATGGGAGACGCTCGGA 61.838 66.667 0.00 0.00 0.00 4.55
1794 3962 4.662961 CACTCCGACGCTGTGGCA 62.663 66.667 9.59 0.00 38.60 4.92
1869 4037 1.306642 CCCGAGTACGTGCTGTCTCT 61.307 60.000 12.07 0.00 37.88 3.10
1907 4078 4.339872 TTTTTACTTCTCCTGGCGTGTA 57.660 40.909 0.00 0.00 0.00 2.90
1910 4081 1.267121 ACTTCTCCTGGCGTGTATGT 58.733 50.000 0.00 0.00 0.00 2.29
1911 4082 2.453521 ACTTCTCCTGGCGTGTATGTA 58.546 47.619 0.00 0.00 0.00 2.29
1912 4083 3.031736 ACTTCTCCTGGCGTGTATGTAT 58.968 45.455 0.00 0.00 0.00 2.29
1914 4085 1.686587 TCTCCTGGCGTGTATGTATGG 59.313 52.381 0.00 0.00 0.00 2.74
1915 4086 0.105964 TCCTGGCGTGTATGTATGGC 59.894 55.000 0.00 0.00 0.00 4.40
1916 4087 0.179059 CCTGGCGTGTATGTATGGCA 60.179 55.000 0.00 0.00 39.48 4.92
1918 4089 0.813610 TGGCGTGTATGTATGGCAGC 60.814 55.000 0.00 0.00 37.24 5.25
1919 4090 0.813610 GGCGTGTATGTATGGCAGCA 60.814 55.000 0.00 0.00 32.81 4.41
1920 4091 0.304705 GCGTGTATGTATGGCAGCAC 59.695 55.000 0.00 0.00 35.22 4.40
1921 4092 0.576798 CGTGTATGTATGGCAGCACG 59.423 55.000 0.00 10.94 45.85 5.34
1922 4093 1.934589 GTGTATGTATGGCAGCACGA 58.065 50.000 0.00 0.00 31.11 4.35
1923 4094 1.593006 GTGTATGTATGGCAGCACGAC 59.407 52.381 0.00 0.00 31.11 4.34
1924 4095 1.205893 TGTATGTATGGCAGCACGACA 59.794 47.619 0.00 0.72 36.70 4.35
1925 4096 1.860950 GTATGTATGGCAGCACGACAG 59.139 52.381 0.00 0.00 34.57 3.51
1943 4114 0.763035 AGCAGGTCGGTTGGTAAGTT 59.237 50.000 0.00 0.00 0.00 2.66
1944 4115 1.972795 AGCAGGTCGGTTGGTAAGTTA 59.027 47.619 0.00 0.00 0.00 2.24
2134 4306 1.015868 GGGACGAGTAACCGAGAGAG 58.984 60.000 0.00 0.00 0.00 3.20
2255 4434 1.383664 CAGGAGGAGATGGCAGGGA 60.384 63.158 0.00 0.00 0.00 4.20
2394 4573 1.228124 TCCCACCAGAACAAAGCCG 60.228 57.895 0.00 0.00 0.00 5.52
2395 4574 1.528309 CCCACCAGAACAAAGCCGT 60.528 57.895 0.00 0.00 0.00 5.68
2415 4594 3.061928 CGTGTTTGATCGTTGTTTTGCTG 60.062 43.478 0.00 0.00 0.00 4.41
2518 4697 9.528018 TCATGAACAAATTTCTAAAAGTTGTCC 57.472 29.630 15.78 6.82 32.42 4.02
2537 4716 6.993786 TGTCCTCGCATGATATTTTGTTAA 57.006 33.333 0.00 0.00 0.00 2.01
2570 4792 7.206687 TGTGGTTTTGTTATTTCTCAACCATC 58.793 34.615 4.95 1.10 44.13 3.51
2572 4794 7.872483 GTGGTTTTGTTATTTCTCAACCATCAT 59.128 33.333 4.95 0.00 44.13 2.45
2628 5101 3.697542 CCATGCAAGATTCCATGTTCTGA 59.302 43.478 0.00 0.00 37.67 3.27
2757 6528 7.672983 AATTTATTTTCTCAGTTGAGCGAGA 57.327 32.000 4.25 0.00 41.80 4.04
2856 6627 9.357161 ACACCTTTTATTTGTGGATAGTTGTTA 57.643 29.630 0.00 0.00 34.33 2.41
2877 6649 6.934083 TGTTATGCCTTTTTGGGAGAATTTTC 59.066 34.615 0.00 0.00 39.48 2.29
2886 6661 6.975196 TTTGGGAGAATTTTCTTGATGTGA 57.025 33.333 0.00 0.00 37.73 3.58
2920 6695 1.190833 AGAGTCCAGAGGCAGTGTGG 61.191 60.000 0.00 0.00 41.26 4.17
2938 6713 4.667573 TGTGGAACATAATTGCCACCTTA 58.332 39.130 0.00 0.00 45.67 2.69
2945 6720 5.822204 ACATAATTGCCACCTTAGTTGGTA 58.178 37.500 0.00 0.00 38.45 3.25
2988 6763 8.545420 CCATAAAATTAATGAGTTCATTGCAGC 58.455 33.333 15.72 0.00 45.34 5.25
3003 6778 1.210931 CAGCGAAGGGTGTGCATTG 59.789 57.895 0.00 0.00 36.90 2.82
3165 6940 3.510360 ACACGTATTCCTAGCTCACAACT 59.490 43.478 0.00 0.00 0.00 3.16
3169 6944 5.105310 ACGTATTCCTAGCTCACAACTGAAT 60.105 40.000 0.00 0.00 0.00 2.57
3178 6953 3.686726 GCTCACAACTGAATACTCTTGGG 59.313 47.826 0.00 0.00 0.00 4.12
3184 6959 6.536582 CACAACTGAATACTCTTGGGTCTATG 59.463 42.308 0.00 0.00 0.00 2.23
3197 6972 3.153919 GGGTCTATGTTTGCAGGTTCAA 58.846 45.455 0.00 0.00 0.00 2.69
3272 7047 0.469917 AGTGCTTGATATGACCGGGG 59.530 55.000 6.32 0.00 0.00 5.73
3289 7064 2.493501 GTCCCTACGTCGCCCTTC 59.506 66.667 0.00 0.00 0.00 3.46
3354 7129 0.263765 ATAGGAGTTAGGACCGGCCA 59.736 55.000 15.92 1.38 40.02 5.36
3457 7232 7.820386 TGTTGCTATATTTCGGTTGAGTTAAGA 59.180 33.333 0.00 0.00 0.00 2.10
3551 7327 8.400186 TCATATCGACGAGTTGTATGTAAAAGA 58.600 33.333 13.21 0.00 0.00 2.52
3559 7335 7.660208 ACGAGTTGTATGTAAAAGACCTCAATT 59.340 33.333 0.00 0.00 0.00 2.32
3567 7343 7.873719 TGTAAAAGACCTCAATTTGACTTGA 57.126 32.000 0.00 0.00 34.14 3.02
3572 7348 3.476552 ACCTCAATTTGACTTGAAGCGA 58.523 40.909 0.00 0.00 34.86 4.93
3577 7353 4.996758 TCAATTTGACTTGAAGCGAGATGA 59.003 37.500 0.00 0.00 32.35 2.92
3636 7412 2.279935 AAGGACACATTTAACCCGCA 57.720 45.000 0.00 0.00 0.00 5.69
3637 7413 1.821216 AGGACACATTTAACCCGCAG 58.179 50.000 0.00 0.00 0.00 5.18
3638 7414 1.349688 AGGACACATTTAACCCGCAGA 59.650 47.619 0.00 0.00 0.00 4.26
3717 7542 0.661187 GTTGCCGTCAACTGTGCATG 60.661 55.000 1.31 0.00 46.81 4.06
3806 7631 7.307493 TCATTTTTGACATTGACGGAGATAG 57.693 36.000 0.00 0.00 0.00 2.08
3839 7664 9.982651 ATAGTACACCAACATAGATAATGACAC 57.017 33.333 0.00 0.00 39.07 3.67
3840 7665 6.978659 AGTACACCAACATAGATAATGACACG 59.021 38.462 0.00 0.00 39.07 4.49
3841 7666 5.972935 ACACCAACATAGATAATGACACGA 58.027 37.500 0.00 0.00 39.07 4.35
3842 7667 6.582636 ACACCAACATAGATAATGACACGAT 58.417 36.000 0.00 0.00 39.07 3.73
3843 7668 6.479990 ACACCAACATAGATAATGACACGATG 59.520 38.462 0.00 0.00 39.07 3.84
3844 7669 6.479990 CACCAACATAGATAATGACACGATGT 59.520 38.462 0.00 0.00 39.07 3.06
3915 9759 3.242381 GGAATGCAAAATAAATGGTGCGC 60.242 43.478 0.00 0.00 39.92 6.09
3938 9782 1.971167 GCAGGGGTTCGAACATGCA 60.971 57.895 30.95 0.00 35.67 3.96
3943 9787 1.750778 GGGGTTCGAACATGCATTCAT 59.249 47.619 28.24 0.00 0.00 2.57
3980 9824 6.544620 CGCAAGCTAATTTTTGATGTACTG 57.455 37.500 0.00 0.00 0.00 2.74
4013 9860 1.134580 AGTACAGATGCAAGCGCTCAT 60.135 47.619 12.06 11.47 39.64 2.90
4019 9866 5.668471 ACAGATGCAAGCGCTCATATATAT 58.332 37.500 12.06 0.00 39.64 0.86
4044 9891 8.245195 TGTGCATATACTCACTCCTATAAACA 57.755 34.615 0.00 0.00 34.49 2.83
4046 9893 7.326305 GTGCATATACTCACTCCTATAAACACG 59.674 40.741 0.00 0.00 0.00 4.49
4048 9895 3.146618 ACTCACTCCTATAAACACGCG 57.853 47.619 3.53 3.53 0.00 6.01
4049 9896 2.490903 ACTCACTCCTATAAACACGCGT 59.509 45.455 5.58 5.58 0.00 6.01
4050 9897 2.852413 CTCACTCCTATAAACACGCGTG 59.148 50.000 35.99 35.99 0.00 5.34
4051 9898 1.323534 CACTCCTATAAACACGCGTGC 59.676 52.381 37.35 0.00 0.00 5.34
4052 9899 1.067425 ACTCCTATAAACACGCGTGCA 60.067 47.619 37.35 23.45 0.00 4.57
4053 9900 1.323534 CTCCTATAAACACGCGTGCAC 59.676 52.381 37.35 6.82 0.00 4.57
4055 9902 1.201877 CCTATAAACACGCGTGCACAC 60.202 52.381 37.35 6.15 0.00 3.82
4057 9904 0.041663 ATAAACACGCGTGCACACAC 60.042 50.000 37.35 4.47 43.76 3.82
4058 9905 1.084935 TAAACACGCGTGCACACACT 61.085 50.000 37.35 14.96 45.10 3.55
4059 9906 2.304516 AAACACGCGTGCACACACTC 62.305 55.000 37.35 0.00 45.10 3.51
4060 9907 2.961721 CACGCGTGCACACACTCT 60.962 61.111 28.16 0.00 45.10 3.24
4061 9908 1.660264 CACGCGTGCACACACTCTA 60.660 57.895 28.16 0.00 45.10 2.43
4062 9909 1.008875 CACGCGTGCACACACTCTAT 61.009 55.000 28.16 0.00 45.10 1.98
4065 10247 0.108615 GCGTGCACACACTCTATCCT 60.109 55.000 18.64 0.00 45.10 3.24
4068 10250 3.738281 GCGTGCACACACTCTATCCTTAT 60.738 47.826 18.64 0.00 45.10 1.73
4074 10256 5.741383 GCACACACTCTATCCTTATGAGCAT 60.741 44.000 0.00 0.00 0.00 3.79
4087 10269 9.857656 ATCCTTATGAGCATCTCTAATTTTTGA 57.142 29.630 0.00 0.00 34.92 2.69
4116 10298 6.839124 TTGGTTAGGACAGTCGACTAAATA 57.161 37.500 19.57 6.32 0.00 1.40
4120 10302 6.094603 GGTTAGGACAGTCGACTAAATACAGA 59.905 42.308 19.57 0.00 0.00 3.41
4137 10319 2.422127 ACAGACCACAACTTTGTTTCCG 59.578 45.455 0.00 0.00 39.91 4.30
4142 10324 3.445805 ACCACAACTTTGTTTCCGTCAAT 59.554 39.130 0.00 0.00 39.91 2.57
4149 10331 4.862018 ACTTTGTTTCCGTCAATTTGTGTG 59.138 37.500 0.00 0.00 0.00 3.82
4158 10340 2.095059 GTCAATTTGTGTGCTAGCCAGG 60.095 50.000 13.29 0.00 0.00 4.45
4164 10346 1.270839 TGTGTGCTAGCCAGGTTTCTC 60.271 52.381 13.29 0.00 0.00 2.87
4168 10350 0.179097 GCTAGCCAGGTTTCTCTCGG 60.179 60.000 2.29 0.00 0.00 4.63
4182 10364 1.733041 CTCGGTCGTTGTGTCGCAT 60.733 57.895 0.00 0.00 0.00 4.73
4218 10400 0.553819 TGTGCAAAGGGTAGTTGGGT 59.446 50.000 0.00 0.00 0.00 4.51
4230 10412 4.276926 GGGTAGTTGGGTATACGTACTCTG 59.723 50.000 0.00 0.00 32.25 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 8.184304 AGTACAAGGCAACATTATTTAAACCA 57.816 30.769 0.00 0.00 41.41 3.67
41 42 2.247635 ACATGAGAGAGGGGTAGGCTTA 59.752 50.000 0.00 0.00 0.00 3.09
43 44 0.639392 ACATGAGAGAGGGGTAGGCT 59.361 55.000 0.00 0.00 0.00 4.58
45 46 3.603965 AGTACATGAGAGAGGGGTAGG 57.396 52.381 0.00 0.00 0.00 3.18
59 60 9.817809 CTCATGCGGGTATATATAAAAGTACAT 57.182 33.333 0.00 0.00 0.00 2.29
67 68 9.811995 GTATTGAACTCATGCGGGTATATATAA 57.188 33.333 0.00 0.00 0.00 0.98
79 80 3.000041 TGTCGGTGTATTGAACTCATGC 59.000 45.455 0.00 0.00 0.00 4.06
80 81 5.801350 ATTGTCGGTGTATTGAACTCATG 57.199 39.130 0.00 0.00 0.00 3.07
93 94 8.849490 CAAATATTTCTTGTTGTATTGTCGGTG 58.151 33.333 0.00 0.00 0.00 4.94
135 136 6.089551 CCGAGTTTCAAGAGTTATGTGTGTAG 59.910 42.308 0.00 0.00 0.00 2.74
155 156 5.148651 ACTGTTGCTACTTATTTCCGAGT 57.851 39.130 0.00 0.00 0.00 4.18
186 187 1.070445 CAGGGCCATCATCGAGGTC 59.930 63.158 6.18 0.00 0.00 3.85
287 288 0.958382 TGTTAGTGTTGCGGATGGGC 60.958 55.000 0.00 0.00 0.00 5.36
298 299 0.108138 GCCGAGCTCCATGTTAGTGT 60.108 55.000 8.47 0.00 0.00 3.55
302 303 1.220749 GTGGCCGAGCTCCATGTTA 59.779 57.895 8.47 0.00 35.81 2.41
315 316 4.736896 GTCGTGTCTCCGGTGGCC 62.737 72.222 5.53 0.00 0.00 5.36
330 1579 3.476552 TGGACTCTTGGTTGTTCATGTC 58.523 45.455 0.00 0.00 0.00 3.06
334 1583 3.433598 CCTCTTGGACTCTTGGTTGTTCA 60.434 47.826 0.00 0.00 34.57 3.18
404 1654 7.003482 AGGGCCAATTTTGTTAATTTTCACAT 58.997 30.769 6.18 0.00 0.00 3.21
405 1655 6.360618 AGGGCCAATTTTGTTAATTTTCACA 58.639 32.000 6.18 0.00 0.00 3.58
406 1656 6.875948 AGGGCCAATTTTGTTAATTTTCAC 57.124 33.333 6.18 0.00 0.00 3.18
407 1657 7.888250 AAAGGGCCAATTTTGTTAATTTTCA 57.112 28.000 6.18 0.00 0.00 2.69
408 1658 7.865385 GGAAAAGGGCCAATTTTGTTAATTTTC 59.135 33.333 19.36 8.36 34.04 2.29
409 1659 7.201956 GGGAAAAGGGCCAATTTTGTTAATTTT 60.202 33.333 19.36 0.00 30.22 1.82
410 1660 6.266558 GGGAAAAGGGCCAATTTTGTTAATTT 59.733 34.615 19.36 0.00 30.22 1.82
411 1661 5.772672 GGGAAAAGGGCCAATTTTGTTAATT 59.227 36.000 19.36 0.00 30.22 1.40
412 1662 5.163045 TGGGAAAAGGGCCAATTTTGTTAAT 60.163 36.000 19.36 0.00 30.22 1.40
413 1663 4.166144 TGGGAAAAGGGCCAATTTTGTTAA 59.834 37.500 19.36 3.63 30.22 2.01
414 1664 3.716872 TGGGAAAAGGGCCAATTTTGTTA 59.283 39.130 19.36 5.65 30.22 2.41
415 1665 2.511637 TGGGAAAAGGGCCAATTTTGTT 59.488 40.909 19.36 0.00 30.22 2.83
416 1666 2.131023 TGGGAAAAGGGCCAATTTTGT 58.869 42.857 19.36 0.41 30.22 2.83
417 1667 2.947127 TGGGAAAAGGGCCAATTTTG 57.053 45.000 19.36 0.00 30.22 2.44
418 1668 3.204158 AGTTTGGGAAAAGGGCCAATTTT 59.796 39.130 15.58 15.58 32.68 1.82
419 1669 2.782925 AGTTTGGGAAAAGGGCCAATTT 59.217 40.909 6.18 6.67 0.00 1.82
420 1670 2.417652 AGTTTGGGAAAAGGGCCAATT 58.582 42.857 6.18 0.00 0.00 2.32
421 1671 2.116869 AGTTTGGGAAAAGGGCCAAT 57.883 45.000 6.18 0.00 0.00 3.16
422 1672 1.765904 GAAGTTTGGGAAAAGGGCCAA 59.234 47.619 6.18 0.00 0.00 4.52
423 1673 1.343478 TGAAGTTTGGGAAAAGGGCCA 60.343 47.619 6.18 0.00 0.00 5.36
424 1674 1.419381 TGAAGTTTGGGAAAAGGGCC 58.581 50.000 0.00 0.00 0.00 5.80
425 1675 2.169561 TGTTGAAGTTTGGGAAAAGGGC 59.830 45.455 0.00 0.00 0.00 5.19
426 1676 3.736740 CGTGTTGAAGTTTGGGAAAAGGG 60.737 47.826 0.00 0.00 0.00 3.95
427 1677 3.129638 TCGTGTTGAAGTTTGGGAAAAGG 59.870 43.478 0.00 0.00 0.00 3.11
428 1678 4.364415 TCGTGTTGAAGTTTGGGAAAAG 57.636 40.909 0.00 0.00 0.00 2.27
429 1679 4.785511 TTCGTGTTGAAGTTTGGGAAAA 57.214 36.364 0.00 0.00 31.44 2.29
430 1680 4.785511 TTTCGTGTTGAAGTTTGGGAAA 57.214 36.364 0.00 0.00 37.99 3.13
431 1681 4.440802 CCATTTCGTGTTGAAGTTTGGGAA 60.441 41.667 0.00 0.00 37.99 3.97
432 1682 3.067461 CCATTTCGTGTTGAAGTTTGGGA 59.933 43.478 0.00 0.00 37.99 4.37
433 1683 3.181480 ACCATTTCGTGTTGAAGTTTGGG 60.181 43.478 0.00 0.00 37.30 4.12
434 1684 4.040445 ACCATTTCGTGTTGAAGTTTGG 57.960 40.909 0.00 0.00 37.99 3.28
435 1685 4.041723 GGACCATTTCGTGTTGAAGTTTG 58.958 43.478 0.00 0.00 37.99 2.93
436 1686 3.067601 GGGACCATTTCGTGTTGAAGTTT 59.932 43.478 0.00 0.00 37.99 2.66
437 1687 2.621526 GGGACCATTTCGTGTTGAAGTT 59.378 45.455 0.00 0.00 37.99 2.66
438 1688 2.227194 GGGACCATTTCGTGTTGAAGT 58.773 47.619 0.00 0.00 37.99 3.01
439 1689 2.226330 TGGGACCATTTCGTGTTGAAG 58.774 47.619 0.00 0.00 37.99 3.02
440 1690 2.226330 CTGGGACCATTTCGTGTTGAA 58.774 47.619 0.00 0.00 33.85 2.69
441 1691 1.142060 ACTGGGACCATTTCGTGTTGA 59.858 47.619 0.00 0.00 0.00 3.18
442 1692 1.535462 GACTGGGACCATTTCGTGTTG 59.465 52.381 0.00 0.00 0.00 3.33
443 1693 1.420138 AGACTGGGACCATTTCGTGTT 59.580 47.619 0.00 0.00 0.00 3.32
444 1694 1.056660 AGACTGGGACCATTTCGTGT 58.943 50.000 0.00 0.00 0.00 4.49
445 1695 3.328382 TTAGACTGGGACCATTTCGTG 57.672 47.619 0.00 0.00 0.00 4.35
446 1696 4.360951 TTTTAGACTGGGACCATTTCGT 57.639 40.909 0.00 0.00 0.00 3.85
447 1697 5.897377 ATTTTTAGACTGGGACCATTTCG 57.103 39.130 0.00 0.00 0.00 3.46
448 1698 9.803315 GAAATATTTTTAGACTGGGACCATTTC 57.197 33.333 1.43 0.00 0.00 2.17
449 1699 9.320295 TGAAATATTTTTAGACTGGGACCATTT 57.680 29.630 1.43 0.00 0.00 2.32
450 1700 8.893563 TGAAATATTTTTAGACTGGGACCATT 57.106 30.769 1.43 0.00 0.00 3.16
452 1702 9.983024 TTATGAAATATTTTTAGACTGGGACCA 57.017 29.630 1.43 0.00 0.00 4.02
466 1716 8.685427 GCAAAAGGGCCATTTTATGAAATATTT 58.315 29.630 26.32 0.00 33.78 1.40
467 1717 7.833183 TGCAAAAGGGCCATTTTATGAAATATT 59.167 29.630 26.32 0.00 33.78 1.28
468 1718 7.344913 TGCAAAAGGGCCATTTTATGAAATAT 58.655 30.769 26.32 0.00 33.78 1.28
469 1719 6.715280 TGCAAAAGGGCCATTTTATGAAATA 58.285 32.000 26.32 6.64 33.78 1.40
470 1720 5.568392 TGCAAAAGGGCCATTTTATGAAAT 58.432 33.333 26.32 1.20 35.90 2.17
471 1721 4.978099 TGCAAAAGGGCCATTTTATGAAA 58.022 34.783 26.32 8.88 31.29 2.69
472 1722 4.630644 TGCAAAAGGGCCATTTTATGAA 57.369 36.364 26.32 9.44 31.29 2.57
473 1723 4.224594 TCATGCAAAAGGGCCATTTTATGA 59.775 37.500 26.03 26.03 30.34 2.15
474 1724 4.333372 GTCATGCAAAAGGGCCATTTTATG 59.667 41.667 26.32 24.57 31.29 1.90
475 1725 4.516323 GTCATGCAAAAGGGCCATTTTAT 58.484 39.130 26.32 15.35 31.29 1.40
476 1726 3.616076 CGTCATGCAAAAGGGCCATTTTA 60.616 43.478 26.32 13.70 31.29 1.52
477 1727 2.781923 GTCATGCAAAAGGGCCATTTT 58.218 42.857 21.91 21.91 32.65 1.82
478 1728 1.338011 CGTCATGCAAAAGGGCCATTT 60.338 47.619 10.16 10.16 0.00 2.32
479 1729 0.247185 CGTCATGCAAAAGGGCCATT 59.753 50.000 6.18 0.00 0.00 3.16
480 1730 1.892338 CGTCATGCAAAAGGGCCAT 59.108 52.632 6.18 0.00 0.00 4.40
481 1731 2.929903 GCGTCATGCAAAAGGGCCA 61.930 57.895 6.18 0.00 45.45 5.36
482 1732 2.125952 GCGTCATGCAAAAGGGCC 60.126 61.111 0.00 0.00 45.45 5.80
505 1755 1.187087 ATCTAGTATGGCGCCCTAGC 58.813 55.000 26.77 12.92 0.00 3.42
506 1756 2.359531 GCTATCTAGTATGGCGCCCTAG 59.640 54.545 26.77 25.32 0.00 3.02
507 1757 2.291346 TGCTATCTAGTATGGCGCCCTA 60.291 50.000 26.77 16.85 0.00 3.53
508 1758 1.187087 GCTATCTAGTATGGCGCCCT 58.813 55.000 26.77 18.16 0.00 5.19
509 1759 0.895530 TGCTATCTAGTATGGCGCCC 59.104 55.000 26.77 8.84 0.00 6.13
510 1760 2.166459 TCATGCTATCTAGTATGGCGCC 59.834 50.000 22.73 22.73 43.69 6.53
511 1761 3.182967 GTCATGCTATCTAGTATGGCGC 58.817 50.000 13.21 0.00 43.69 6.53
513 1763 3.182967 GCGTCATGCTATCTAGTATGGC 58.817 50.000 13.21 11.22 44.24 4.40
514 1764 3.429547 GGGCGTCATGCTATCTAGTATGG 60.430 52.174 13.21 2.69 43.69 2.74
515 1765 3.429547 GGGGCGTCATGCTATCTAGTATG 60.430 52.174 8.50 8.50 44.51 2.39
516 1766 2.761208 GGGGCGTCATGCTATCTAGTAT 59.239 50.000 0.00 0.00 45.43 2.12
517 1767 2.168496 GGGGCGTCATGCTATCTAGTA 58.832 52.381 0.00 0.00 45.43 1.82
518 1768 0.969894 GGGGCGTCATGCTATCTAGT 59.030 55.000 0.00 0.00 45.43 2.57
519 1769 0.109086 CGGGGCGTCATGCTATCTAG 60.109 60.000 0.00 0.00 45.43 2.43
520 1770 1.532604 CCGGGGCGTCATGCTATCTA 61.533 60.000 0.00 0.00 45.43 1.98
521 1771 2.737180 CGGGGCGTCATGCTATCT 59.263 61.111 0.00 0.00 45.43 1.98
522 1772 2.357517 CCGGGGCGTCATGCTATC 60.358 66.667 0.00 0.00 45.43 2.08
523 1773 3.941188 CCCGGGGCGTCATGCTAT 61.941 66.667 14.71 0.00 45.43 2.97
540 1790 3.809374 AATAGCACGGCGCCCTAGC 62.809 63.158 23.46 21.95 44.04 3.42
541 1791 1.227556 AAATAGCACGGCGCCCTAG 60.228 57.895 23.46 12.23 44.04 3.02
542 1792 1.522806 CAAATAGCACGGCGCCCTA 60.523 57.895 23.46 17.15 44.04 3.53
543 1793 2.824041 CAAATAGCACGGCGCCCT 60.824 61.111 23.46 15.27 44.04 5.19
544 1794 3.887868 CCAAATAGCACGGCGCCC 61.888 66.667 23.46 7.02 44.04 6.13
545 1795 4.552745 GCCAAATAGCACGGCGCC 62.553 66.667 19.07 19.07 44.04 6.53
562 1812 2.477754 CGACATGTAGCATGGCACTATG 59.522 50.000 14.38 0.00 0.00 2.23
563 1813 2.759191 CGACATGTAGCATGGCACTAT 58.241 47.619 14.38 0.00 0.00 2.12
564 1814 1.806247 GCGACATGTAGCATGGCACTA 60.806 52.381 23.92 0.00 0.00 2.74
565 1815 1.091771 GCGACATGTAGCATGGCACT 61.092 55.000 23.92 0.00 0.00 4.40
566 1816 1.353103 GCGACATGTAGCATGGCAC 59.647 57.895 23.92 1.79 0.00 5.01
567 1817 0.676151 TTGCGACATGTAGCATGGCA 60.676 50.000 30.25 15.48 40.70 4.92
568 1818 0.248215 GTTGCGACATGTAGCATGGC 60.248 55.000 30.25 20.14 40.70 4.40
569 1819 0.378257 GGTTGCGACATGTAGCATGG 59.622 55.000 30.25 3.67 40.70 3.66
570 1820 1.085893 TGGTTGCGACATGTAGCATG 58.914 50.000 30.25 7.48 40.70 4.06
571 1821 1.672363 CATGGTTGCGACATGTAGCAT 59.328 47.619 30.25 17.85 40.70 3.79
572 1822 1.085893 CATGGTTGCGACATGTAGCA 58.914 50.000 27.02 27.02 40.54 3.49
573 1823 0.378257 CCATGGTTGCGACATGTAGC 59.622 55.000 22.40 22.40 43.15 3.58
574 1824 0.378257 GCCATGGTTGCGACATGTAG 59.622 55.000 14.67 0.00 43.15 2.74
575 1825 2.476772 GCCATGGTTGCGACATGTA 58.523 52.632 14.67 0.00 43.15 2.29
576 1826 3.277133 GCCATGGTTGCGACATGT 58.723 55.556 14.67 0.00 43.15 3.21
583 1833 1.819632 CCTAGGACGCCATGGTTGC 60.820 63.158 14.67 6.24 0.00 4.17
584 1834 1.819632 GCCTAGGACGCCATGGTTG 60.820 63.158 14.75 9.14 0.00 3.77
585 1835 2.590092 GCCTAGGACGCCATGGTT 59.410 61.111 14.75 0.00 0.00 3.67
586 1836 3.480133 GGCCTAGGACGCCATGGT 61.480 66.667 14.75 0.00 46.27 3.55
597 1847 4.609018 CATGACGCCCCGGCCTAG 62.609 72.222 0.00 0.00 37.98 3.02
602 1852 4.899239 GAGAGCATGACGCCCCGG 62.899 72.222 0.00 0.00 44.04 5.73
603 1853 1.810606 ATAGAGAGCATGACGCCCCG 61.811 60.000 0.00 0.00 44.04 5.73
604 1854 0.037790 GATAGAGAGCATGACGCCCC 60.038 60.000 0.00 0.00 44.04 5.80
605 1855 0.676184 TGATAGAGAGCATGACGCCC 59.324 55.000 0.00 0.00 44.04 6.13
606 1856 2.739885 ATGATAGAGAGCATGACGCC 57.260 50.000 0.00 0.00 44.04 5.68
611 1861 1.077123 GCGCCATGATAGAGAGCATG 58.923 55.000 0.00 0.00 46.88 4.06
612 1862 0.036577 GGCGCCATGATAGAGAGCAT 60.037 55.000 24.80 0.00 29.59 3.79
613 1863 1.368950 GGCGCCATGATAGAGAGCA 59.631 57.895 24.80 0.00 0.00 4.26
614 1864 1.375268 GGGCGCCATGATAGAGAGC 60.375 63.158 30.85 1.22 0.00 4.09
615 1865 1.294780 GGGGCGCCATGATAGAGAG 59.705 63.158 30.85 0.00 0.00 3.20
616 1866 1.459348 TGGGGCGCCATGATAGAGA 60.459 57.895 30.85 0.00 0.00 3.10
617 1867 1.004080 CTGGGGCGCCATGATAGAG 60.004 63.158 30.85 5.71 0.00 2.43
618 1868 3.150949 CTGGGGCGCCATGATAGA 58.849 61.111 30.85 0.00 0.00 1.98
619 1869 2.670934 GCTGGGGCGCCATGATAG 60.671 66.667 30.85 18.22 0.00 2.08
637 1887 3.340953 CTTTTGCATGACGCCCGGG 62.341 63.158 19.09 19.09 41.33 5.73
638 1888 2.179018 CTTTTGCATGACGCCCGG 59.821 61.111 0.00 0.00 41.33 5.73
639 1889 1.135315 CTCTTTTGCATGACGCCCG 59.865 57.895 0.00 0.00 41.33 6.13
640 1890 1.508088 CCTCTTTTGCATGACGCCC 59.492 57.895 0.00 0.00 41.33 6.13
641 1891 1.244019 ACCCTCTTTTGCATGACGCC 61.244 55.000 0.00 0.00 41.33 5.68
642 1892 0.169009 GACCCTCTTTTGCATGACGC 59.831 55.000 0.00 0.00 42.89 5.19
643 1893 1.522668 TGACCCTCTTTTGCATGACG 58.477 50.000 0.00 0.00 0.00 4.35
644 1894 4.525912 AAATGACCCTCTTTTGCATGAC 57.474 40.909 0.00 0.00 0.00 3.06
645 1895 4.344679 ACAAAATGACCCTCTTTTGCATGA 59.655 37.500 0.00 0.00 43.07 3.07
646 1896 4.449743 CACAAAATGACCCTCTTTTGCATG 59.550 41.667 7.46 0.00 43.07 4.06
647 1897 4.344679 TCACAAAATGACCCTCTTTTGCAT 59.655 37.500 7.46 0.00 43.07 3.96
648 1898 3.703556 TCACAAAATGACCCTCTTTTGCA 59.296 39.130 7.46 0.00 43.07 4.08
649 1899 4.320608 TCACAAAATGACCCTCTTTTGC 57.679 40.909 7.46 0.00 43.07 3.68
650 1900 9.492973 AATATTTCACAAAATGACCCTCTTTTG 57.507 29.630 6.28 6.28 44.22 2.44
653 1903 9.710900 GAAAATATTTCACAAAATGACCCTCTT 57.289 29.630 0.10 0.00 36.92 2.85
654 1904 8.869109 TGAAAATATTTCACAAAATGACCCTCT 58.131 29.630 0.10 0.00 36.92 3.69
655 1905 9.143631 CTGAAAATATTTCACAAAATGACCCTC 57.856 33.333 0.10 0.00 36.92 4.30
656 1906 8.869109 TCTGAAAATATTTCACAAAATGACCCT 58.131 29.630 0.10 0.00 36.92 4.34
657 1907 8.925700 GTCTGAAAATATTTCACAAAATGACCC 58.074 33.333 0.10 0.00 36.92 4.46
658 1908 9.696917 AGTCTGAAAATATTTCACAAAATGACC 57.303 29.630 0.10 2.40 36.92 4.02
664 1914 8.730680 GGCTCTAGTCTGAAAATATTTCACAAA 58.269 33.333 0.10 0.00 0.00 2.83
665 1915 7.882791 TGGCTCTAGTCTGAAAATATTTCACAA 59.117 33.333 0.10 0.00 0.00 3.33
666 1916 7.394016 TGGCTCTAGTCTGAAAATATTTCACA 58.606 34.615 0.10 4.76 0.00 3.58
667 1917 7.849804 TGGCTCTAGTCTGAAAATATTTCAC 57.150 36.000 0.10 0.23 0.00 3.18
668 1918 9.466497 AAATGGCTCTAGTCTGAAAATATTTCA 57.534 29.630 0.10 5.50 0.00 2.69
669 1919 9.943163 GAAATGGCTCTAGTCTGAAAATATTTC 57.057 33.333 0.10 0.00 0.00 2.17
670 1920 8.616076 CGAAATGGCTCTAGTCTGAAAATATTT 58.384 33.333 0.00 0.00 0.00 1.40
671 1921 7.770897 ACGAAATGGCTCTAGTCTGAAAATATT 59.229 33.333 0.00 0.00 0.00 1.28
672 1922 7.225538 CACGAAATGGCTCTAGTCTGAAAATAT 59.774 37.037 0.00 0.00 0.00 1.28
673 1923 6.535150 CACGAAATGGCTCTAGTCTGAAAATA 59.465 38.462 0.00 0.00 0.00 1.40
674 1924 5.352569 CACGAAATGGCTCTAGTCTGAAAAT 59.647 40.000 0.00 0.00 0.00 1.82
675 1925 4.690748 CACGAAATGGCTCTAGTCTGAAAA 59.309 41.667 0.00 0.00 0.00 2.29
676 1926 4.245660 CACGAAATGGCTCTAGTCTGAAA 58.754 43.478 0.00 0.00 0.00 2.69
677 1927 3.258372 ACACGAAATGGCTCTAGTCTGAA 59.742 43.478 0.00 0.00 0.00 3.02
678 1928 2.826128 ACACGAAATGGCTCTAGTCTGA 59.174 45.455 0.00 0.00 0.00 3.27
679 1929 3.238108 ACACGAAATGGCTCTAGTCTG 57.762 47.619 0.00 0.00 0.00 3.51
680 1930 3.258372 TCAACACGAAATGGCTCTAGTCT 59.742 43.478 0.00 0.00 0.00 3.24
681 1931 3.585862 TCAACACGAAATGGCTCTAGTC 58.414 45.455 0.00 0.00 0.00 2.59
682 1932 3.678056 TCAACACGAAATGGCTCTAGT 57.322 42.857 0.00 0.00 0.00 2.57
683 1933 3.997021 ACTTCAACACGAAATGGCTCTAG 59.003 43.478 0.00 0.00 31.71 2.43
684 1934 3.745975 CACTTCAACACGAAATGGCTCTA 59.254 43.478 0.00 0.00 31.71 2.43
685 1935 2.549754 CACTTCAACACGAAATGGCTCT 59.450 45.455 0.00 0.00 31.71 4.09
686 1936 2.290641 ACACTTCAACACGAAATGGCTC 59.709 45.455 0.00 0.00 35.12 4.70
687 1937 2.290641 GACACTTCAACACGAAATGGCT 59.709 45.455 0.00 0.00 35.90 4.75
688 1938 2.650608 GACACTTCAACACGAAATGGC 58.349 47.619 0.00 0.00 35.12 4.40
689 1939 2.349438 CCGACACTTCAACACGAAATGG 60.349 50.000 0.00 0.00 35.12 3.16
690 1940 2.542178 TCCGACACTTCAACACGAAATG 59.458 45.455 0.00 0.00 36.89 2.32
691 1941 2.828877 TCCGACACTTCAACACGAAAT 58.171 42.857 0.00 0.00 31.71 2.17
692 1942 2.296831 TCCGACACTTCAACACGAAA 57.703 45.000 0.00 0.00 31.71 3.46
693 1943 2.296831 TTCCGACACTTCAACACGAA 57.703 45.000 0.00 0.00 0.00 3.85
694 1944 2.296831 TTTCCGACACTTCAACACGA 57.703 45.000 0.00 0.00 0.00 4.35
695 1945 3.288242 CATTTTCCGACACTTCAACACG 58.712 45.455 0.00 0.00 0.00 4.49
696 1946 3.628017 CCATTTTCCGACACTTCAACAC 58.372 45.455 0.00 0.00 0.00 3.32
697 1947 2.034053 GCCATTTTCCGACACTTCAACA 59.966 45.455 0.00 0.00 0.00 3.33
698 1948 2.607038 GGCCATTTTCCGACACTTCAAC 60.607 50.000 0.00 0.00 0.00 3.18
699 1949 1.611491 GGCCATTTTCCGACACTTCAA 59.389 47.619 0.00 0.00 0.00 2.69
700 1950 1.243902 GGCCATTTTCCGACACTTCA 58.756 50.000 0.00 0.00 0.00 3.02
701 1951 1.200020 CTGGCCATTTTCCGACACTTC 59.800 52.381 5.51 0.00 0.00 3.01
702 1952 1.247567 CTGGCCATTTTCCGACACTT 58.752 50.000 5.51 0.00 0.00 3.16
703 1953 0.110486 ACTGGCCATTTTCCGACACT 59.890 50.000 5.51 0.00 0.00 3.55
704 1954 0.958822 AACTGGCCATTTTCCGACAC 59.041 50.000 5.51 0.00 0.00 3.67
705 1955 1.698506 AAACTGGCCATTTTCCGACA 58.301 45.000 14.91 0.00 0.00 4.35
706 1956 2.223947 ACAAAACTGGCCATTTTCCGAC 60.224 45.455 20.17 0.00 0.00 4.79
707 1957 2.035321 GACAAAACTGGCCATTTTCCGA 59.965 45.455 20.17 0.00 0.00 4.55
708 1958 2.403259 GACAAAACTGGCCATTTTCCG 58.597 47.619 20.17 16.28 0.00 4.30
709 1959 2.103941 TGGACAAAACTGGCCATTTTCC 59.896 45.455 20.17 17.32 43.19 3.13
710 1960 3.467374 TGGACAAAACTGGCCATTTTC 57.533 42.857 20.17 9.16 43.19 2.29
716 1966 3.392882 CTGAAAATGGACAAAACTGGCC 58.607 45.455 0.00 0.00 37.53 5.36
717 1967 2.802247 GCTGAAAATGGACAAAACTGGC 59.198 45.455 0.00 0.00 0.00 4.85
718 1968 4.053295 CAGCTGAAAATGGACAAAACTGG 58.947 43.478 8.42 0.00 0.00 4.00
719 1969 4.935702 TCAGCTGAAAATGGACAAAACTG 58.064 39.130 15.67 0.00 0.00 3.16
720 1970 5.535333 CATCAGCTGAAAATGGACAAAACT 58.465 37.500 22.50 0.00 0.00 2.66
721 1971 4.151157 GCATCAGCTGAAAATGGACAAAAC 59.849 41.667 22.50 0.00 37.91 2.43
722 1972 4.309099 GCATCAGCTGAAAATGGACAAAA 58.691 39.130 22.50 0.00 37.91 2.44
723 1973 3.916761 GCATCAGCTGAAAATGGACAAA 58.083 40.909 22.50 0.00 37.91 2.83
724 1974 3.581024 GCATCAGCTGAAAATGGACAA 57.419 42.857 22.50 0.00 37.91 3.18
737 1987 2.086869 TGTTTGGCTTAGAGCATCAGC 58.913 47.619 2.04 0.00 44.75 4.26
738 1988 2.097142 GCTGTTTGGCTTAGAGCATCAG 59.903 50.000 2.04 5.67 44.75 2.90
739 1989 2.086869 GCTGTTTGGCTTAGAGCATCA 58.913 47.619 2.04 0.00 44.75 3.07
740 1990 2.086869 TGCTGTTTGGCTTAGAGCATC 58.913 47.619 7.06 0.00 44.75 3.91
792 2042 2.434702 AGTCCGCACTTTATTAGGAGGG 59.565 50.000 0.00 0.00 0.00 4.30
810 2060 4.276183 TGCATGCTAGCTAGTACAGTAGTC 59.724 45.833 21.62 2.71 34.99 2.59
1443 3605 1.139058 GTCATGGCCTTCTCCATACGT 59.861 52.381 3.32 0.00 44.63 3.57
1446 3608 1.688735 CGAGTCATGGCCTTCTCCATA 59.311 52.381 3.32 0.00 44.63 2.74
1552 3720 6.348622 CCAGGTAATCGCATCACTACTAGTAG 60.349 46.154 25.30 25.30 39.04 2.57
1555 3723 4.278669 ACCAGGTAATCGCATCACTACTAG 59.721 45.833 0.00 0.00 0.00 2.57
1556 3724 4.212716 ACCAGGTAATCGCATCACTACTA 58.787 43.478 0.00 0.00 0.00 1.82
1557 3725 3.031736 ACCAGGTAATCGCATCACTACT 58.968 45.455 0.00 0.00 0.00 2.57
1558 3726 3.181479 TGACCAGGTAATCGCATCACTAC 60.181 47.826 0.00 0.00 0.00 2.73
1744 3912 2.105128 CTCCCATGCGACGAGGAC 59.895 66.667 0.00 0.00 0.00 3.85
1751 3919 4.193334 CGAGCGTCTCCCATGCGA 62.193 66.667 0.00 0.00 42.55 5.10
1770 3938 4.719369 GCGTCGGAGTGCGGTTCT 62.719 66.667 3.57 0.00 0.00 3.01
1782 3950 4.363990 AGGTCTGCCACAGCGTCG 62.364 66.667 0.00 0.00 44.31 5.12
1860 4028 0.386858 GTGCGTTACGAGAGACAGCA 60.387 55.000 9.62 0.00 0.00 4.41
1861 4029 2.350833 GTGCGTTACGAGAGACAGC 58.649 57.895 9.62 0.00 0.00 4.40
1886 4057 3.202829 ACACGCCAGGAGAAGTAAAAA 57.797 42.857 0.00 0.00 0.00 1.94
1890 4061 2.453521 ACATACACGCCAGGAGAAGTA 58.546 47.619 0.00 0.00 0.00 2.24
1895 4066 1.873903 GCCATACATACACGCCAGGAG 60.874 57.143 0.00 0.00 0.00 3.69
1907 4078 1.091771 GCTGTCGTGCTGCCATACAT 61.092 55.000 0.00 0.00 36.24 2.29
1910 4081 1.448365 CTGCTGTCGTGCTGCCATA 60.448 57.895 0.00 0.00 40.74 2.74
1911 4082 2.745100 CTGCTGTCGTGCTGCCAT 60.745 61.111 0.00 0.00 40.74 4.40
1912 4083 4.994471 CCTGCTGTCGTGCTGCCA 62.994 66.667 0.00 0.00 40.74 4.92
1914 4085 3.418068 GACCTGCTGTCGTGCTGC 61.418 66.667 0.00 0.00 41.65 5.25
1921 4092 0.034337 TTACCAACCGACCTGCTGTC 59.966 55.000 0.00 0.00 40.81 3.51
1922 4093 0.034896 CTTACCAACCGACCTGCTGT 59.965 55.000 0.00 0.00 0.00 4.40
1923 4094 0.034896 ACTTACCAACCGACCTGCTG 59.965 55.000 0.00 0.00 0.00 4.41
1924 4095 0.763035 AACTTACCAACCGACCTGCT 59.237 50.000 0.00 0.00 0.00 4.24
1925 4096 2.460757 TAACTTACCAACCGACCTGC 57.539 50.000 0.00 0.00 0.00 4.85
1943 4114 9.542462 CCTGCATTTTTGTAGTAGTAGCTTATA 57.458 33.333 0.00 0.00 0.00 0.98
1944 4115 7.012421 GCCTGCATTTTTGTAGTAGTAGCTTAT 59.988 37.037 0.00 0.00 0.00 1.73
2134 4306 1.525804 GCCGAAACGACACGCAAAAC 61.526 55.000 0.00 0.00 0.00 2.43
2181 4360 0.034337 GACACTACCCTGAACGCCAA 59.966 55.000 0.00 0.00 0.00 4.52
2182 4361 1.116536 TGACACTACCCTGAACGCCA 61.117 55.000 0.00 0.00 0.00 5.69
2183 4362 0.669625 GTGACACTACCCTGAACGCC 60.670 60.000 0.00 0.00 0.00 5.68
2255 4434 3.133014 CCGCATGACCTCCTCGAT 58.867 61.111 0.00 0.00 0.00 3.59
2368 4547 5.417580 GCTTTGTTCTGGTGGGACATAATAA 59.582 40.000 0.00 0.00 44.52 1.40
2369 4548 4.947388 GCTTTGTTCTGGTGGGACATAATA 59.053 41.667 0.00 0.00 44.52 0.98
2370 4549 3.763897 GCTTTGTTCTGGTGGGACATAAT 59.236 43.478 0.00 0.00 44.52 1.28
2394 4573 4.101942 TCAGCAAAACAACGATCAAACAC 58.898 39.130 0.00 0.00 0.00 3.32
2395 4574 4.362932 TCAGCAAAACAACGATCAAACA 57.637 36.364 0.00 0.00 0.00 2.83
2518 4697 6.043327 TCGGTTAACAAAATATCATGCGAG 57.957 37.500 8.10 0.00 0.00 5.03
2537 4716 6.713450 AGAAATAACAAAACCACATACTCGGT 59.287 34.615 0.00 0.00 36.98 4.69
2582 4804 9.729281 TGGGTCTTAACTTCGACTAAAAATAAT 57.271 29.630 0.00 0.00 0.00 1.28
2589 4811 4.020928 TGCATGGGTCTTAACTTCGACTAA 60.021 41.667 0.00 0.00 0.00 2.24
2595 4817 5.163612 GGAATCTTGCATGGGTCTTAACTTC 60.164 44.000 0.00 0.00 0.00 3.01
2649 5122 9.543783 AACCTTTTAGTAGTTTAGTGAGTGAAG 57.456 33.333 0.00 0.00 0.00 3.02
2672 6442 3.665745 AATGTTCACCATCTTGCAACC 57.334 42.857 0.00 0.00 31.75 3.77
2856 6627 5.830799 AGAAAATTCTCCCAAAAAGGCAT 57.169 34.783 0.00 0.00 35.39 4.40
2857 6628 5.130145 TCAAGAAAATTCTCCCAAAAAGGCA 59.870 36.000 0.00 0.00 36.28 4.75
2877 6649 8.777413 TCTAGAAGTTTGTTCATTCACATCAAG 58.223 33.333 0.00 0.00 0.00 3.02
2886 6661 7.067496 TCTGGACTCTAGAAGTTTGTTCATT 57.933 36.000 0.00 0.00 38.74 2.57
2920 6695 5.185056 ACCAACTAAGGTGGCAATTATGTTC 59.815 40.000 0.40 0.00 41.30 3.18
2988 6763 2.093306 TCTACAATGCACACCCTTCG 57.907 50.000 0.00 0.00 0.00 3.79
3165 6940 5.880332 GCAAACATAGACCCAAGAGTATTCA 59.120 40.000 0.00 0.00 0.00 2.57
3169 6944 4.323485 CCTGCAAACATAGACCCAAGAGTA 60.323 45.833 0.00 0.00 0.00 2.59
3178 6953 5.239525 ACTTCTTGAACCTGCAAACATAGAC 59.760 40.000 0.00 0.00 0.00 2.59
3184 6959 4.290969 GCTTACTTCTTGAACCTGCAAAC 58.709 43.478 0.00 0.00 0.00 2.93
3272 7047 0.749454 TAGAAGGGCGACGTAGGGAC 60.749 60.000 0.00 0.00 0.00 4.46
3289 7064 1.009829 GCACTCCGCTTTGGTGATAG 58.990 55.000 0.00 0.00 39.52 2.08
3354 7129 4.771054 ACTTGAATCTTGTAGTACGGGACT 59.229 41.667 0.00 0.00 42.69 3.85
3408 7183 1.342496 GGACCGCATCTCTCATGATCA 59.658 52.381 0.00 0.00 0.00 2.92
3420 7195 0.183492 ATAGCAACATGGGACCGCAT 59.817 50.000 0.00 0.00 0.00 4.73
3469 7244 9.421399 TCCATACATAGATAAGTCACAGAAGAA 57.579 33.333 0.00 0.00 0.00 2.52
3510 7286 3.490249 CGATATGACTAGCCACCGAACAA 60.490 47.826 0.00 0.00 0.00 2.83
3551 7327 3.476552 TCGCTTCAAGTCAAATTGAGGT 58.523 40.909 0.00 0.00 40.16 3.85
3559 7335 7.334171 TGATTTTATCATCTCGCTTCAAGTCAA 59.666 33.333 0.00 0.00 33.59 3.18
3567 7343 9.764363 TTAGTGTATGATTTTATCATCTCGCTT 57.236 29.630 17.38 8.82 46.62 4.68
3591 7367 7.706100 ACTTGGTTTACAACTTTTCCAGTTA 57.294 32.000 0.00 0.00 44.60 2.24
3649 7425 5.786311 ACGCTGTAGTAAAATGTGTCCTTA 58.214 37.500 0.00 0.00 0.00 2.69
3669 7449 2.935651 CGGTAGAACTAACGGACGC 58.064 57.895 10.88 0.00 42.13 5.19
3717 7542 0.179073 ATCCACACGTCTGCCATAGC 60.179 55.000 0.00 0.00 40.48 2.97
3745 7570 5.247792 GGACGGAGGGAGTGGTTTATATTAT 59.752 44.000 0.00 0.00 0.00 1.28
3748 7573 2.970640 GGACGGAGGGAGTGGTTTATAT 59.029 50.000 0.00 0.00 0.00 0.86
3781 7606 6.573664 ATCTCCGTCAATGTCAAAAATGAA 57.426 33.333 0.00 0.00 0.00 2.57
3891 7716 4.630940 CGCACCATTTATTTTGCATTCCTT 59.369 37.500 0.00 0.00 34.49 3.36
3893 7718 3.242381 GCGCACCATTTATTTTGCATTCC 60.242 43.478 0.30 0.00 34.49 3.01
3915 9759 0.817634 TGTTCGAACCCCTGCAACAG 60.818 55.000 24.78 0.00 0.00 3.16
3938 9782 2.053865 CGCTGGGTTGGGCATGAAT 61.054 57.895 0.00 0.00 0.00 2.57
3992 9839 0.649475 GAGCGCTTGCATCTGTACTG 59.351 55.000 13.26 0.00 42.66 2.74
3994 9841 1.293924 ATGAGCGCTTGCATCTGTAC 58.706 50.000 13.26 0.00 42.66 2.90
4019 9866 8.141909 GTGTTTATAGGAGTGAGTATATGCACA 58.858 37.037 9.64 0.00 37.48 4.57
4027 9874 3.691118 ACGCGTGTTTATAGGAGTGAGTA 59.309 43.478 12.93 0.00 0.00 2.59
4034 9881 1.336980 TGTGCACGCGTGTTTATAGGA 60.337 47.619 36.80 10.95 0.00 2.94
4040 9887 2.099446 GTGTGTGCACGCGTGTTT 59.901 55.556 36.80 0.00 35.75 2.83
4048 9895 5.011090 TCATAAGGATAGAGTGTGTGCAC 57.989 43.478 10.75 10.75 45.57 4.57
4049 9896 4.442052 GCTCATAAGGATAGAGTGTGTGCA 60.442 45.833 0.00 0.00 0.00 4.57
4050 9897 4.054671 GCTCATAAGGATAGAGTGTGTGC 58.945 47.826 0.00 0.00 0.00 4.57
4051 9898 5.268118 TGCTCATAAGGATAGAGTGTGTG 57.732 43.478 0.00 0.00 0.00 3.82
4052 9899 5.837979 AGATGCTCATAAGGATAGAGTGTGT 59.162 40.000 0.00 0.00 33.08 3.72
4053 9900 6.209192 AGAGATGCTCATAAGGATAGAGTGTG 59.791 42.308 0.00 0.00 33.08 3.82
4055 9902 6.839124 AGAGATGCTCATAAGGATAGAGTG 57.161 41.667 0.00 0.00 33.08 3.51
4061 9908 9.857656 TCAAAAATTAGAGATGCTCATAAGGAT 57.142 29.630 0.00 0.00 36.08 3.24
4062 9909 9.857656 ATCAAAAATTAGAGATGCTCATAAGGA 57.142 29.630 0.00 0.00 32.06 3.36
4068 10250 9.857656 AATCCTATCAAAAATTAGAGATGCTCA 57.142 29.630 0.00 0.00 32.06 4.26
4087 10269 4.341520 GTCGACTGTCCTAACCAATCCTAT 59.658 45.833 8.70 0.00 0.00 2.57
4089 10271 2.496470 GTCGACTGTCCTAACCAATCCT 59.504 50.000 8.70 0.00 0.00 3.24
4093 10275 5.733620 ATTTAGTCGACTGTCCTAACCAA 57.266 39.130 28.12 7.92 0.00 3.67
4116 10298 2.422127 CGGAAACAAAGTTGTGGTCTGT 59.578 45.455 0.00 0.00 41.31 3.41
4120 10302 2.438411 TGACGGAAACAAAGTTGTGGT 58.562 42.857 0.00 0.00 41.31 4.16
4137 10319 2.095059 CCTGGCTAGCACACAAATTGAC 60.095 50.000 18.24 0.00 0.00 3.18
4142 10324 1.953686 GAAACCTGGCTAGCACACAAA 59.046 47.619 18.24 0.00 0.00 2.83
4149 10331 0.179097 CCGAGAGAAACCTGGCTAGC 60.179 60.000 6.04 6.04 0.00 3.42
4158 10340 1.785430 GACACAACGACCGAGAGAAAC 59.215 52.381 0.00 0.00 0.00 2.78
4164 10346 0.455464 TATGCGACACAACGACCGAG 60.455 55.000 0.00 0.00 35.09 4.63
4168 10350 1.425412 AGGTTATGCGACACAACGAC 58.575 50.000 0.00 0.00 35.09 4.34
4182 10364 2.745281 GCACAAAGCCAACGATAGGTTA 59.255 45.455 0.00 0.00 36.49 2.85
4218 10400 5.363562 TTCAGAGACCCAGAGTACGTATA 57.636 43.478 0.00 0.00 0.00 1.47
4230 10412 0.108567 GACGCCTCTTTCAGAGACCC 60.109 60.000 2.13 0.00 45.07 4.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.