Multiple sequence alignment - TraesCS1B01G172300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G172300 chr1B 100.000 3008 0 0 1 3008 307386023 307383016 0.000000e+00 5555.0
1 TraesCS1B01G172300 chr1B 91.055 2795 218 23 234 3008 387430451 387427669 0.000000e+00 3747.0
2 TraesCS1B01G172300 chr1B 89.583 2947 257 39 84 2999 200994725 200997652 0.000000e+00 3696.0
3 TraesCS1B01G172300 chr1B 87.758 2957 294 48 84 3008 287515976 287518896 0.000000e+00 3393.0
4 TraesCS1B01G172300 chr3B 90.965 2933 227 28 87 3000 533671959 533669046 0.000000e+00 3914.0
5 TraesCS1B01G172300 chr3B 91.255 2836 208 26 190 3008 128996071 128993259 0.000000e+00 3827.0
6 TraesCS1B01G172300 chr3B 88.497 2947 286 41 83 3008 81049831 81052745 0.000000e+00 3515.0
7 TraesCS1B01G172300 chr3B 87.567 2984 291 57 66 3008 195664861 195667805 0.000000e+00 3382.0
8 TraesCS1B01G172300 chr3B 80.124 322 43 14 1 316 625455811 625456117 1.400000e-53 220.0
9 TraesCS1B01G172300 chr1D 87.462 2959 311 42 66 2999 246372649 246375572 0.000000e+00 3354.0
10 TraesCS1B01G172300 chr5B 92.308 65 3 2 1 63 252649810 252649746 1.150000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G172300 chr1B 307383016 307386023 3007 True 5555 5555 100.000 1 3008 1 chr1B.!!$R1 3007
1 TraesCS1B01G172300 chr1B 387427669 387430451 2782 True 3747 3747 91.055 234 3008 1 chr1B.!!$R2 2774
2 TraesCS1B01G172300 chr1B 200994725 200997652 2927 False 3696 3696 89.583 84 2999 1 chr1B.!!$F1 2915
3 TraesCS1B01G172300 chr1B 287515976 287518896 2920 False 3393 3393 87.758 84 3008 1 chr1B.!!$F2 2924
4 TraesCS1B01G172300 chr3B 533669046 533671959 2913 True 3914 3914 90.965 87 3000 1 chr3B.!!$R2 2913
5 TraesCS1B01G172300 chr3B 128993259 128996071 2812 True 3827 3827 91.255 190 3008 1 chr3B.!!$R1 2818
6 TraesCS1B01G172300 chr3B 81049831 81052745 2914 False 3515 3515 88.497 83 3008 1 chr3B.!!$F1 2925
7 TraesCS1B01G172300 chr3B 195664861 195667805 2944 False 3382 3382 87.567 66 3008 1 chr3B.!!$F2 2942
8 TraesCS1B01G172300 chr1D 246372649 246375572 2923 False 3354 3354 87.462 66 2999 1 chr1D.!!$F1 2933

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
562 583 0.321564 AGGCTTATGCGAGCAACACA 60.322 50.0 0.57 0.0 44.49 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 2155 0.609131 AGCTCACCGGGTTTTGATGG 60.609 55.0 6.32 0.0 0.0 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 9.886132 ATATTAGTACTTCCTTTTTGTCGATGT 57.114 29.630 0.00 0.0 0.00 3.06
66 67 8.617290 ATTAGTACTTCCTTTTTGTCGATGTT 57.383 30.769 0.00 0.0 0.00 2.71
67 68 6.300354 AGTACTTCCTTTTTGTCGATGTTG 57.700 37.500 0.00 0.0 0.00 3.33
68 69 6.053005 AGTACTTCCTTTTTGTCGATGTTGA 58.947 36.000 0.00 0.0 0.00 3.18
69 70 6.710744 AGTACTTCCTTTTTGTCGATGTTGAT 59.289 34.615 0.00 0.0 0.00 2.57
70 71 5.762045 ACTTCCTTTTTGTCGATGTTGATG 58.238 37.500 0.00 0.0 0.00 3.07
71 72 5.299279 ACTTCCTTTTTGTCGATGTTGATGT 59.701 36.000 0.00 0.0 0.00 3.06
72 73 5.766150 TCCTTTTTGTCGATGTTGATGTT 57.234 34.783 0.00 0.0 0.00 2.71
73 74 5.757886 TCCTTTTTGTCGATGTTGATGTTC 58.242 37.500 0.00 0.0 0.00 3.18
74 75 5.530915 TCCTTTTTGTCGATGTTGATGTTCT 59.469 36.000 0.00 0.0 0.00 3.01
75 76 5.626543 CCTTTTTGTCGATGTTGATGTTCTG 59.373 40.000 0.00 0.0 0.00 3.02
76 77 5.749596 TTTTGTCGATGTTGATGTTCTGT 57.250 34.783 0.00 0.0 0.00 3.41
77 78 4.730600 TTGTCGATGTTGATGTTCTGTG 57.269 40.909 0.00 0.0 0.00 3.66
78 79 3.727726 TGTCGATGTTGATGTTCTGTGT 58.272 40.909 0.00 0.0 0.00 3.72
79 80 3.494251 TGTCGATGTTGATGTTCTGTGTG 59.506 43.478 0.00 0.0 0.00 3.82
80 81 3.494626 GTCGATGTTGATGTTCTGTGTGT 59.505 43.478 0.00 0.0 0.00 3.72
81 82 4.024893 GTCGATGTTGATGTTCTGTGTGTT 60.025 41.667 0.00 0.0 0.00 3.32
152 158 6.765915 ATAATCTGAACCTTCCTTTGCTTC 57.234 37.500 0.00 0.0 0.00 3.86
167 173 8.791327 TCCTTTGCTTCTTTTCATTTTCTTTT 57.209 26.923 0.00 0.0 0.00 2.27
170 176 9.481800 CTTTGCTTCTTTTCATTTTCTTTTGTC 57.518 29.630 0.00 0.0 0.00 3.18
171 177 7.220599 TGCTTCTTTTCATTTTCTTTTGTCG 57.779 32.000 0.00 0.0 0.00 4.35
172 178 7.032580 TGCTTCTTTTCATTTTCTTTTGTCGA 58.967 30.769 0.00 0.0 0.00 4.20
173 179 7.706179 TGCTTCTTTTCATTTTCTTTTGTCGAT 59.294 29.630 0.00 0.0 0.00 3.59
174 180 8.000435 GCTTCTTTTCATTTTCTTTTGTCGATG 59.000 33.333 0.00 0.0 0.00 3.84
175 181 9.236691 CTTCTTTTCATTTTCTTTTGTCGATGA 57.763 29.630 0.00 0.0 0.00 2.92
182 188 8.977505 TCATTTTCTTTTGTCGATGATTTTTCC 58.022 29.630 0.00 0.0 0.00 3.13
183 189 7.707774 TTTTCTTTTGTCGATGATTTTTCCC 57.292 32.000 0.00 0.0 0.00 3.97
184 190 5.041951 TCTTTTGTCGATGATTTTTCCCG 57.958 39.130 0.00 0.0 0.00 5.14
185 191 4.757657 TCTTTTGTCGATGATTTTTCCCGA 59.242 37.500 0.00 0.0 0.00 5.14
187 193 5.637006 TTTGTCGATGATTTTTCCCGAAT 57.363 34.783 0.00 0.0 0.00 3.34
188 194 4.614555 TGTCGATGATTTTTCCCGAATG 57.385 40.909 0.00 0.0 0.00 2.67
189 195 4.257731 TGTCGATGATTTTTCCCGAATGA 58.742 39.130 0.00 0.0 0.00 2.57
191 197 5.007626 TGTCGATGATTTTTCCCGAATGATC 59.992 40.000 0.00 0.0 0.00 2.92
192 198 5.237344 GTCGATGATTTTTCCCGAATGATCT 59.763 40.000 0.00 0.0 28.75 2.75
194 200 6.989759 TCGATGATTTTTCCCGAATGATCTTA 59.010 34.615 0.00 0.0 28.75 2.10
195 201 7.171508 TCGATGATTTTTCCCGAATGATCTTAG 59.828 37.037 0.00 0.0 28.75 2.18
197 203 7.938140 TGATTTTTCCCGAATGATCTTAGTT 57.062 32.000 0.00 0.0 0.00 2.24
198 204 9.627123 ATGATTTTTCCCGAATGATCTTAGTTA 57.373 29.630 0.00 0.0 0.00 2.24
201 207 8.488651 TTTTTCCCGAATGATCTTAGTTAGTC 57.511 34.615 0.00 0.0 0.00 2.59
202 208 7.419711 TTTCCCGAATGATCTTAGTTAGTCT 57.580 36.000 0.00 0.0 0.00 3.24
203 209 8.529424 TTTCCCGAATGATCTTAGTTAGTCTA 57.471 34.615 0.00 0.0 0.00 2.59
204 210 7.747155 TCCCGAATGATCTTAGTTAGTCTAG 57.253 40.000 0.00 0.0 0.00 2.43
205 211 7.515586 TCCCGAATGATCTTAGTTAGTCTAGA 58.484 38.462 0.00 0.0 0.00 2.43
206 212 8.164733 TCCCGAATGATCTTAGTTAGTCTAGAT 58.835 37.037 0.00 0.0 0.00 1.98
232 241 8.537728 TTAATATTCTGCTTTCATCACCCAAT 57.462 30.769 0.00 0.0 0.00 3.16
247 256 6.877668 TCACCCAATATTGTGTTACCTAGA 57.122 37.500 14.25 0.0 34.14 2.43
261 271 5.163343 TGTTACCTAGATTTAGCCGAGCATT 60.163 40.000 0.00 0.0 0.00 3.56
482 502 9.152595 CCCTGTTCTAGTTAGTATCTTTTTGTC 57.847 37.037 0.00 0.0 0.00 3.18
562 583 0.321564 AGGCTTATGCGAGCAACACA 60.322 50.000 0.57 0.0 44.49 3.72
570 591 1.068264 TGCGAGCAACACAACAAACAA 60.068 42.857 0.00 0.0 0.00 2.83
575 596 2.030717 AGCAACACAACAAACAACACGA 60.031 40.909 0.00 0.0 0.00 4.35
645 666 1.587613 CTCGGCAGCGAGAAGTAGC 60.588 63.158 6.54 0.0 38.18 3.58
714 735 3.370953 CCTTATGTTGCTCCTACTTGCCT 60.371 47.826 0.00 0.0 0.00 4.75
715 736 2.119801 ATGTTGCTCCTACTTGCCTG 57.880 50.000 0.00 0.0 0.00 4.85
958 980 2.094675 GCCACAACTATGCTCCACAAT 58.905 47.619 0.00 0.0 0.00 2.71
1233 1261 5.831702 AGATTGAGAAGAACATCAATGCC 57.168 39.130 5.23 0.0 44.18 4.40
1720 1751 2.730934 TCCTCGTGCTAGACCTATGT 57.269 50.000 0.00 0.0 0.00 2.29
2018 2052 0.543277 TGGCGATGAGGAGAAGCAAT 59.457 50.000 0.00 0.0 0.00 3.56
2077 2121 2.304180 TGAGGAAGCAAAGGAGAAGAGG 59.696 50.000 0.00 0.0 0.00 3.69
2078 2122 2.569404 GAGGAAGCAAAGGAGAAGAGGA 59.431 50.000 0.00 0.0 0.00 3.71
2085 2129 1.655372 AAGGAGAAGAGGAGCAGCTT 58.345 50.000 0.00 0.0 0.00 3.74
2142 2192 1.168714 GTGAGCTGTTTCATGACCCC 58.831 55.000 0.00 0.0 0.00 4.95
2143 2193 0.770499 TGAGCTGTTTCATGACCCCA 59.230 50.000 0.00 0.0 0.00 4.96
2144 2194 1.144708 TGAGCTGTTTCATGACCCCAA 59.855 47.619 0.00 0.0 0.00 4.12
2157 2213 4.437682 TGACCCCAATCTGAATACCATC 57.562 45.455 0.00 0.0 0.00 3.51
2159 2215 4.416513 TGACCCCAATCTGAATACCATCAT 59.583 41.667 0.00 0.0 0.00 2.45
2160 2216 5.610557 TGACCCCAATCTGAATACCATCATA 59.389 40.000 0.00 0.0 0.00 2.15
2161 2217 5.880901 ACCCCAATCTGAATACCATCATAC 58.119 41.667 0.00 0.0 0.00 2.39
2162 2218 5.372363 ACCCCAATCTGAATACCATCATACA 59.628 40.000 0.00 0.0 0.00 2.29
2163 2219 6.045931 ACCCCAATCTGAATACCATCATACAT 59.954 38.462 0.00 0.0 0.00 2.29
2164 2220 6.950041 CCCCAATCTGAATACCATCATACATT 59.050 38.462 0.00 0.0 0.00 2.71
2178 2234 9.219603 ACCATCATACATTATACATGCTGTAAC 57.780 33.333 0.00 0.0 36.31 2.50
2182 2238 9.051679 TCATACATTATACATGCTGTAACCAAC 57.948 33.333 0.00 0.0 36.31 3.77
2183 2239 6.693315 ACATTATACATGCTGTAACCAACC 57.307 37.500 0.00 0.0 36.31 3.77
2203 2259 2.556622 CCGTTATTTGGGTTGCTTGAGT 59.443 45.455 0.00 0.0 0.00 3.41
2216 2272 7.450014 TGGGTTGCTTGAGTCATTTCTTAAATA 59.550 33.333 0.00 0.0 0.00 1.40
2217 2273 7.755373 GGGTTGCTTGAGTCATTTCTTAAATAC 59.245 37.037 0.00 0.0 0.00 1.89
2239 2297 3.439129 CCGTCCCACTGAATTTTACCTTC 59.561 47.826 0.00 0.0 0.00 3.46
2246 2304 6.037172 CCCACTGAATTTTACCTTCGACATAG 59.963 42.308 0.00 0.0 0.00 2.23
2249 2307 4.879545 TGAATTTTACCTTCGACATAGGGC 59.120 41.667 6.59 0.0 37.09 5.19
2251 2309 1.766494 TTACCTTCGACATAGGGCGA 58.234 50.000 0.00 0.0 37.09 5.54
2420 2479 3.253677 CCTCGATACACCTAGATCACCAC 59.746 52.174 0.00 0.0 0.00 4.16
2667 2728 4.574674 TGTGAAATCTGGTAGCTTGGAT 57.425 40.909 0.00 0.0 0.00 3.41
2981 3053 7.542025 ACTTGTTGATCCTCTTTTATCATTGC 58.458 34.615 0.00 0.0 32.40 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.886132 ACATCGACAAAAAGGAAGTACTAATAT 57.114 29.630 0.00 0.00 0.00 1.28
40 41 9.715121 AACATCGACAAAAAGGAAGTACTAATA 57.285 29.630 0.00 0.00 0.00 0.98
41 42 8.504005 CAACATCGACAAAAAGGAAGTACTAAT 58.496 33.333 0.00 0.00 0.00 1.73
42 43 7.711772 TCAACATCGACAAAAAGGAAGTACTAA 59.288 33.333 0.00 0.00 0.00 2.24
43 44 7.211573 TCAACATCGACAAAAAGGAAGTACTA 58.788 34.615 0.00 0.00 0.00 1.82
44 45 6.053005 TCAACATCGACAAAAAGGAAGTACT 58.947 36.000 0.00 0.00 0.00 2.73
45 46 6.295039 TCAACATCGACAAAAAGGAAGTAC 57.705 37.500 0.00 0.00 0.00 2.73
46 47 6.485313 ACATCAACATCGACAAAAAGGAAGTA 59.515 34.615 0.00 0.00 0.00 2.24
47 48 5.299279 ACATCAACATCGACAAAAAGGAAGT 59.701 36.000 0.00 0.00 0.00 3.01
48 49 5.762045 ACATCAACATCGACAAAAAGGAAG 58.238 37.500 0.00 0.00 0.00 3.46
49 50 5.766150 ACATCAACATCGACAAAAAGGAA 57.234 34.783 0.00 0.00 0.00 3.36
50 51 5.530915 AGAACATCAACATCGACAAAAAGGA 59.469 36.000 0.00 0.00 0.00 3.36
51 52 5.626543 CAGAACATCAACATCGACAAAAAGG 59.373 40.000 0.00 0.00 0.00 3.11
52 53 6.141211 CACAGAACATCAACATCGACAAAAAG 59.859 38.462 0.00 0.00 0.00 2.27
53 54 5.970612 CACAGAACATCAACATCGACAAAAA 59.029 36.000 0.00 0.00 0.00 1.94
54 55 5.065859 ACACAGAACATCAACATCGACAAAA 59.934 36.000 0.00 0.00 0.00 2.44
55 56 4.574421 ACACAGAACATCAACATCGACAAA 59.426 37.500 0.00 0.00 0.00 2.83
56 57 4.024977 CACACAGAACATCAACATCGACAA 60.025 41.667 0.00 0.00 0.00 3.18
57 58 3.494251 CACACAGAACATCAACATCGACA 59.506 43.478 0.00 0.00 0.00 4.35
58 59 3.494626 ACACACAGAACATCAACATCGAC 59.505 43.478 0.00 0.00 0.00 4.20
59 60 3.727726 ACACACAGAACATCAACATCGA 58.272 40.909 0.00 0.00 0.00 3.59
60 61 4.472691 AACACACAGAACATCAACATCG 57.527 40.909 0.00 0.00 0.00 3.84
61 62 8.801715 AAATAAACACACAGAACATCAACATC 57.198 30.769 0.00 0.00 0.00 3.06
63 64 9.729023 CTAAAATAAACACACAGAACATCAACA 57.271 29.630 0.00 0.00 0.00 3.33
64 65 9.730420 ACTAAAATAAACACACAGAACATCAAC 57.270 29.630 0.00 0.00 0.00 3.18
69 70 9.997482 GAGAAACTAAAATAAACACACAGAACA 57.003 29.630 0.00 0.00 0.00 3.18
70 71 9.997482 TGAGAAACTAAAATAAACACACAGAAC 57.003 29.630 0.00 0.00 0.00 3.01
104 106 9.793259 ATACTCTCTGTCTTTTTGGTATTTTCA 57.207 29.630 0.00 0.00 0.00 2.69
121 123 7.595819 AGGAAGGTTCAGATTATACTCTCTG 57.404 40.000 0.00 0.00 40.20 3.35
125 127 7.051000 AGCAAAGGAAGGTTCAGATTATACTC 58.949 38.462 0.00 0.00 0.00 2.59
167 173 4.257731 TCATTCGGGAAAAATCATCGACA 58.742 39.130 0.00 0.00 0.00 4.35
170 176 5.679734 AGATCATTCGGGAAAAATCATCG 57.320 39.130 0.00 0.00 0.00 3.84
171 177 8.159344 ACTAAGATCATTCGGGAAAAATCATC 57.841 34.615 0.00 0.00 0.00 2.92
172 178 8.525290 AACTAAGATCATTCGGGAAAAATCAT 57.475 30.769 0.00 1.65 0.00 2.45
173 179 7.938140 AACTAAGATCATTCGGGAAAAATCA 57.062 32.000 0.00 0.00 0.00 2.57
174 180 9.110502 ACTAACTAAGATCATTCGGGAAAAATC 57.889 33.333 0.00 0.00 0.00 2.17
175 181 9.110502 GACTAACTAAGATCATTCGGGAAAAAT 57.889 33.333 0.00 0.00 0.00 1.82
180 186 7.515586 TCTAGACTAACTAAGATCATTCGGGA 58.484 38.462 0.00 0.00 0.00 5.14
181 187 7.747155 TCTAGACTAACTAAGATCATTCGGG 57.253 40.000 0.00 0.00 0.00 5.14
203 209 8.854117 GGGTGATGAAAGCAGAATATTAAATCT 58.146 33.333 0.00 0.00 24.12 2.40
204 210 8.632679 TGGGTGATGAAAGCAGAATATTAAATC 58.367 33.333 0.00 0.00 24.12 2.17
205 211 8.537728 TGGGTGATGAAAGCAGAATATTAAAT 57.462 30.769 0.00 0.00 24.12 1.40
206 212 7.953005 TGGGTGATGAAAGCAGAATATTAAA 57.047 32.000 0.00 0.00 24.12 1.52
209 215 8.716674 ATATTGGGTGATGAAAGCAGAATATT 57.283 30.769 0.00 0.00 24.12 1.28
212 220 6.381994 ACAATATTGGGTGATGAAAGCAGAAT 59.618 34.615 19.37 0.00 24.12 2.40
218 226 7.122650 AGGTAACACAATATTGGGTGATGAAAG 59.877 37.037 23.69 1.25 45.74 2.62
220 228 6.489603 AGGTAACACAATATTGGGTGATGAA 58.510 36.000 23.69 5.23 45.74 2.57
227 236 8.784043 GCTAAATCTAGGTAACACAATATTGGG 58.216 37.037 16.31 16.31 41.41 4.12
232 241 7.350744 TCGGCTAAATCTAGGTAACACAATA 57.649 36.000 0.00 0.00 41.41 1.90
247 256 2.095853 CGACAACAATGCTCGGCTAAAT 59.904 45.455 0.00 0.00 31.13 1.40
261 271 1.582968 GGACTAGGCGACGACAACA 59.417 57.895 2.19 0.00 0.00 3.33
337 350 0.179150 GCAACGGCGCCAAAATGATA 60.179 50.000 28.98 0.00 0.00 2.15
482 502 4.571984 CCAACCTGCAAAAAGGAAAAGAAG 59.428 41.667 0.00 0.00 40.02 2.85
562 583 8.024285 TCTTGAATACTTTTCGTGTTGTTTGTT 58.976 29.630 0.00 0.00 0.00 2.83
616 637 0.871057 GCTGCCGAGCTAAATCATCC 59.129 55.000 0.00 0.00 42.52 3.51
645 666 3.645687 AGAGCTAGGCCTATCCTCAAAAG 59.354 47.826 28.57 13.93 43.20 2.27
714 735 1.337118 GGCCCTGAAATCCACAAACA 58.663 50.000 0.00 0.00 0.00 2.83
715 736 1.337118 TGGCCCTGAAATCCACAAAC 58.663 50.000 0.00 0.00 0.00 2.93
1233 1261 2.554893 GAGGGAAGAGATAGTACTGCCG 59.445 54.545 5.39 0.00 32.84 5.69
1694 1725 3.830755 AGGTCTAGCACGAGGAAAGTAAA 59.169 43.478 0.00 0.00 0.00 2.01
2018 2052 1.302431 CTTCATCGTGTGTGCCCCA 60.302 57.895 0.00 0.00 0.00 4.96
2077 2121 3.825308 CTCGATCATCTCTAAGCTGCTC 58.175 50.000 1.00 0.00 0.00 4.26
2078 2122 2.030007 GCTCGATCATCTCTAAGCTGCT 60.030 50.000 0.00 0.00 31.24 4.24
2085 2129 1.533299 GCACTCGCTCGATCATCTCTA 59.467 52.381 0.00 0.00 34.30 2.43
2110 2155 0.609131 AGCTCACCGGGTTTTGATGG 60.609 55.000 6.32 0.00 0.00 3.51
2182 2238 2.556622 ACTCAAGCAACCCAAATAACGG 59.443 45.455 0.00 0.00 0.00 4.44
2183 2239 3.252215 TGACTCAAGCAACCCAAATAACG 59.748 43.478 0.00 0.00 0.00 3.18
2203 2259 5.878116 CAGTGGGACGGTATTTAAGAAATGA 59.122 40.000 0.00 0.00 32.38 2.57
2216 2272 2.374170 AGGTAAAATTCAGTGGGACGGT 59.626 45.455 0.00 0.00 0.00 4.83
2217 2273 3.067684 AGGTAAAATTCAGTGGGACGG 57.932 47.619 0.00 0.00 0.00 4.79
2239 2297 1.794701 CACATCAATCGCCCTATGTCG 59.205 52.381 0.00 0.00 30.32 4.35
2246 2304 3.814842 TCACATATTCACATCAATCGCCC 59.185 43.478 0.00 0.00 0.00 6.13
2249 2307 7.010830 ACTCAGTTCACATATTCACATCAATCG 59.989 37.037 0.00 0.00 0.00 3.34
2251 2309 7.609146 ACACTCAGTTCACATATTCACATCAAT 59.391 33.333 0.00 0.00 0.00 2.57
2420 2479 3.853671 GGCACAAATTCAGCATCTAAACG 59.146 43.478 0.00 0.00 0.00 3.60
2981 3053 9.511144 AGTAAACTCGACCATTTTAAACTTTTG 57.489 29.630 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.