Multiple sequence alignment - TraesCS1B01G171200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G171200 chr1B 100.000 8939 0 0 772 9710 304519754 304510816 0.000000e+00 16508.0
1 TraesCS1B01G171200 chr1B 100.000 402 0 0 1 402 304520525 304520124 0.000000e+00 743.0
2 TraesCS1B01G171200 chr1B 89.362 141 10 5 3324 3462 661509419 661509282 1.300000e-38 172.0
3 TraesCS1B01G171200 chr1B 94.382 89 5 0 89 177 656007384 656007296 4.730000e-28 137.0
4 TraesCS1B01G171200 chr1A 96.500 4257 89 18 5495 9710 267799368 267803605 0.000000e+00 6981.0
5 TraesCS1B01G171200 chr1A 91.726 1547 69 21 2275 3792 267795549 267797065 0.000000e+00 2093.0
6 TraesCS1B01G171200 chr1A 97.115 1144 19 3 3810 4950 267797806 267798938 0.000000e+00 1917.0
7 TraesCS1B01G171200 chr1A 95.726 1053 21 2 862 1912 267794536 267795566 0.000000e+00 1674.0
8 TraesCS1B01G171200 chr1A 96.536 433 14 1 4984 5415 267798939 267799371 0.000000e+00 715.0
9 TraesCS1B01G171200 chr1A 95.631 206 4 1 176 381 267793912 267794112 9.400000e-85 326.0
10 TraesCS1B01G171200 chr1A 100.000 39 0 0 3786 3824 267797769 267797807 1.350000e-08 73.1
11 TraesCS1B01G171200 chr1D 97.021 2249 51 10 5530 7775 211955343 211957578 0.000000e+00 3768.0
12 TraesCS1B01G171200 chr1D 95.171 1926 30 16 7832 9710 211957561 211959470 0.000000e+00 2983.0
13 TraesCS1B01G171200 chr1D 97.489 1633 33 3 3786 5415 211953694 211955321 0.000000e+00 2782.0
14 TraesCS1B01G171200 chr1D 98.163 1143 18 2 772 1912 211950544 211951685 0.000000e+00 1991.0
15 TraesCS1B01G171200 chr1D 94.888 626 25 5 2707 3325 211952012 211952637 0.000000e+00 972.0
16 TraesCS1B01G171200 chr1D 97.159 352 10 0 2275 2626 211951668 211952019 6.490000e-166 595.0
17 TraesCS1B01G171200 chr1D 95.879 364 11 2 3429 3792 211952636 211952995 3.910000e-163 586.0
18 TraesCS1B01G171200 chr1D 98.333 180 3 0 223 402 211950292 211950471 5.660000e-82 316.0
19 TraesCS1B01G171200 chr1D 91.765 85 7 0 5414 5498 212378746 212378662 1.710000e-22 119.0
20 TraesCS1B01G171200 chr1D 90.217 92 8 1 5408 5498 492948136 492948045 1.710000e-22 119.0
21 TraesCS1B01G171200 chr1D 90.698 86 8 0 5414 5499 9228657 9228742 2.220000e-21 115.0
22 TraesCS1B01G171200 chr1D 89.888 89 9 0 5411 5499 124334334 124334422 2.220000e-21 115.0
23 TraesCS1B01G171200 chr1D 87.755 98 11 1 5409 5505 50021597 50021694 7.970000e-21 113.0
24 TraesCS1B01G171200 chr1D 84.536 97 9 2 6619 6713 211956299 211956391 3.730000e-14 91.6
25 TraesCS1B01G171200 chr1D 88.889 54 1 1 175 223 211942808 211942861 2.930000e-05 62.1
26 TraesCS1B01G171200 chr6B 98.374 369 4 2 1912 2280 227273115 227272749 0.000000e+00 647.0
27 TraesCS1B01G171200 chr6B 95.763 118 4 1 3316 3433 30889189 30889073 1.290000e-43 189.0
28 TraesCS1B01G171200 chr6B 90.196 102 9 1 84 185 182592442 182592542 2.200000e-26 132.0
29 TraesCS1B01G171200 chr3B 98.356 365 5 1 1916 2279 820904401 820904037 2.960000e-179 640.0
30 TraesCS1B01G171200 chr3B 98.352 364 4 2 1917 2279 820904217 820903855 1.060000e-178 638.0
31 TraesCS1B01G171200 chr3B 98.319 357 4 2 1918 2273 265849532 265849887 8.280000e-175 625.0
32 TraesCS1B01G171200 chr3B 98.198 111 2 0 3321 3431 178397167 178397277 2.770000e-45 195.0
33 TraesCS1B01G171200 chr3B 96.491 114 4 0 3324 3437 214547621 214547508 1.290000e-43 189.0
34 TraesCS1B01G171200 chr3B 95.690 116 5 0 3317 3432 47354206 47354321 4.630000e-43 187.0
35 TraesCS1B01G171200 chr3B 93.684 95 5 1 89 182 161708726 161708632 3.660000e-29 141.0
36 TraesCS1B01G171200 chr3B 93.182 88 6 0 5411 5498 104711991 104712078 7.910000e-26 130.0
37 TraesCS1B01G171200 chr2B 97.790 362 6 2 1917 2277 69371620 69371980 2.980000e-174 623.0
38 TraesCS1B01G171200 chr2B 94.253 87 5 0 91 177 712786554 712786640 6.120000e-27 134.0
39 TraesCS1B01G171200 chr4A 96.748 369 9 2 1912 2279 450333069 450332703 6.450000e-171 612.0
40 TraesCS1B01G171200 chr4A 96.122 361 11 3 1920 2279 17479317 17479675 3.910000e-163 586.0
41 TraesCS1B01G171200 chr4A 94.253 87 5 0 91 177 81265599 81265513 6.120000e-27 134.0
42 TraesCS1B01G171200 chr4A 90.426 94 7 2 5406 5498 24824451 24824543 1.320000e-23 122.0
43 TraesCS1B01G171200 chr4A 86.667 105 12 2 5414 5518 222555815 222555917 2.220000e-21 115.0
44 TraesCS1B01G171200 chr4B 95.430 372 15 2 1899 2268 462230978 462230607 8.400000e-165 592.0
45 TraesCS1B01G171200 chr4B 94.837 368 16 3 1916 2281 425645335 425644969 1.090000e-158 571.0
46 TraesCS1B01G171200 chr4B 91.045 134 11 1 3299 3431 449123703 449123570 7.750000e-41 180.0
47 TraesCS1B01G171200 chr5B 95.722 187 8 0 9524 9710 20974035 20974221 1.580000e-77 302.0
48 TraesCS1B01G171200 chr2D 95.000 120 4 2 3319 3437 352204157 352204275 4.630000e-43 187.0
49 TraesCS1B01G171200 chr3D 94.215 121 7 0 3310 3430 606889407 606889287 1.670000e-42 185.0
50 TraesCS1B01G171200 chr3D 92.135 89 7 0 5410 5498 545547791 545547879 1.020000e-24 126.0
51 TraesCS1B01G171200 chr3D 91.011 89 8 0 5411 5499 107462722 107462634 4.760000e-23 121.0
52 TraesCS1B01G171200 chr3D 88.542 96 11 0 5414 5509 23941558 23941463 6.160000e-22 117.0
53 TraesCS1B01G171200 chr3D 89.362 94 9 1 5405 5498 562507859 562507951 6.160000e-22 117.0
54 TraesCS1B01G171200 chr5A 87.838 148 13 4 3317 3463 9470794 9470937 1.680000e-37 169.0
55 TraesCS1B01G171200 chr5A 93.407 91 6 0 91 181 126275719 126275629 1.700000e-27 135.0
56 TraesCS1B01G171200 chr5A 89.691 97 8 2 5410 5505 113720176 113720081 1.320000e-23 122.0
57 TraesCS1B01G171200 chr5A 88.889 99 8 3 5405 5502 687692597 687692501 1.710000e-22 119.0
58 TraesCS1B01G171200 chr7A 96.512 86 3 0 92 177 84749835 84749750 1.020000e-29 143.0
59 TraesCS1B01G171200 chr5D 93.478 92 5 1 87 177 391058513 391058422 1.700000e-27 135.0
60 TraesCS1B01G171200 chr5D 89.247 93 10 0 5406 5498 453867958 453867866 6.160000e-22 117.0
61 TraesCS1B01G171200 chr5D 88.421 95 11 0 5414 5508 124913469 124913563 2.220000e-21 115.0
62 TraesCS1B01G171200 chr5D 89.247 93 9 1 5406 5498 539450784 539450693 2.220000e-21 115.0
63 TraesCS1B01G171200 chr5D 87.129 101 12 1 5406 5506 554515000 554514901 7.970000e-21 113.0
64 TraesCS1B01G171200 chrUn 90.816 98 9 0 87 184 94636348 94636251 2.200000e-26 132.0
65 TraesCS1B01G171200 chrUn 91.954 87 7 0 5412 5498 197752393 197752479 1.320000e-23 122.0
66 TraesCS1B01G171200 chrUn 100.000 33 0 0 5467 5499 87200173 87200141 2.930000e-05 62.1
67 TraesCS1B01G171200 chrUn 91.304 46 2 2 5455 5499 184044685 184044641 2.930000e-05 62.1
68 TraesCS1B01G171200 chrUn 91.304 46 2 2 5455 5499 191235096 191235140 2.930000e-05 62.1
69 TraesCS1B01G171200 chrUn 91.304 46 2 2 5455 5499 195498829 195498785 2.930000e-05 62.1
70 TraesCS1B01G171200 chrUn 100.000 32 0 0 5467 5498 94223233 94223202 1.050000e-04 60.2
71 TraesCS1B01G171200 chrUn 92.857 42 2 1 5458 5499 195510794 195510754 1.050000e-04 60.2
72 TraesCS1B01G171200 chrUn 92.857 42 2 1 5458 5499 382946924 382946884 1.050000e-04 60.2
73 TraesCS1B01G171200 chr7D 94.186 86 5 0 5413 5498 171549089 171549004 2.200000e-26 132.0
74 TraesCS1B01G171200 chr7D 91.111 90 6 2 5410 5499 161480231 161480318 4.760000e-23 121.0
75 TraesCS1B01G171200 chr6D 91.489 94 7 1 5410 5503 62245313 62245405 2.850000e-25 128.0
76 TraesCS1B01G171200 chr6D 90.588 85 8 0 5414 5498 85039235 85039151 7.970000e-21 113.0
77 TraesCS1B01G171200 chr6D 89.412 85 9 0 5414 5498 413065931 413065847 3.710000e-19 108.0
78 TraesCS1B01G171200 chr6D 92.647 68 5 0 5431 5498 149897816 149897883 2.230000e-16 99.0
79 TraesCS1B01G171200 chr6D 86.667 90 7 5 5410 5498 301472883 301472798 2.890000e-15 95.3
80 TraesCS1B01G171200 chr6D 87.805 82 9 1 5414 5495 396152473 396152393 2.890000e-15 95.3
81 TraesCS1B01G171200 chr6D 83.168 101 6 6 5409 5498 7460173 7460273 2.250000e-11 82.4
82 TraesCS1B01G171200 chr6D 97.436 39 1 0 5460 5498 91516391 91516429 6.290000e-07 67.6
83 TraesCS1B01G171200 chr6D 95.000 40 2 0 5460 5499 406201209 406201248 8.140000e-06 63.9
84 TraesCS1B01G171200 chr7B 90.426 94 9 0 5411 5504 48190817 48190910 3.680000e-24 124.0
85 TraesCS1B01G171200 chr4D 90.526 95 8 1 5404 5498 455894244 455894151 3.680000e-24 124.0
86 TraesCS1B01G171200 chr4D 88.571 105 7 4 5403 5506 252227600 252227700 1.320000e-23 122.0
87 TraesCS1B01G171200 chr4D 86.408 103 12 2 5397 5498 436953255 436953154 2.870000e-20 111.0
88 TraesCS1B01G171200 chr6A 88.776 98 10 1 5409 5506 520842815 520842719 1.710000e-22 119.0
89 TraesCS1B01G171200 chr2A 88.119 101 11 1 5405 5505 102692166 102692067 1.710000e-22 119.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G171200 chr1B 304510816 304520525 9709 True 8625.500000 16508 100.000000 1 9710 2 chr1B.!!$R3 9709
1 TraesCS1B01G171200 chr1A 267793912 267803605 9693 False 1968.442857 6981 96.176286 176 9710 7 chr1A.!!$F1 9534
2 TraesCS1B01G171200 chr1D 211950292 211959470 9178 False 1564.955556 3768 95.404333 223 9710 9 chr1D.!!$F5 9487
3 TraesCS1B01G171200 chr3B 820903855 820904401 546 True 639.000000 640 98.354000 1916 2279 2 chr3B.!!$R3 363

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
387 388 1.686325 ATCGACGCCCACCATTAGCT 61.686 55.000 0.00 0.00 0.00 3.32 F
883 884 2.202570 CGCCGAGTTCCGATTCGT 60.203 61.111 5.20 0.00 41.76 3.85 F
1389 1394 1.087771 GGATACAAAGCGACGGGGTG 61.088 60.000 0.00 0.00 0.00 4.61 F
2290 2479 0.041535 TCCCCTTCTGCCATGCAATT 59.958 50.000 0.00 0.00 38.41 2.32 F
2939 3136 0.179037 TAGGCCAGCAGATGACATGC 60.179 55.000 5.01 0.00 44.18 4.06 F
3416 3623 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30 F
4891 5837 0.914644 ATGCAGCTACCACATGGACT 59.085 50.000 4.53 0.00 38.94 3.85 F
5427 6373 1.144503 TGATAGTACTCCCTCCGTCCC 59.855 57.143 0.00 0.00 0.00 4.46 F
5429 6375 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00 F
5431 6377 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90 F
5432 6378 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28 F
5540 6486 2.909662 TGGTGTTCCATGGTCTCATGTA 59.090 45.455 12.58 0.00 46.96 2.29 F
7260 8208 1.901833 GGCCAACAGGAATTTCATGGT 59.098 47.619 14.84 5.89 31.56 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1203 1204 0.782384 GACGAACCGCGCCAATATAG 59.218 55.000 0.00 0.00 46.04 1.31 R
1914 1919 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94 R
3103 3300 1.085091 AGCAGCAGAGAAAATCAGCG 58.915 50.000 0.00 0.00 44.70 5.18 R
3413 3620 0.033796 ACATACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55 R
4369 5312 1.197721 CACAGATGCCGTTCTCAAACC 59.802 52.381 0.00 0.00 31.27 3.27 R
5411 6357 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73 R
6252 7199 0.730265 TTGGCATACGCGGCTAAAAG 59.270 50.000 12.47 0.00 39.92 2.27 R
7117 8065 0.389166 TACATGCACACGCGACATCA 60.389 50.000 15.93 5.66 42.97 3.07 R
7118 8066 0.930310 ATACATGCACACGCGACATC 59.070 50.000 15.93 0.00 42.97 3.06 R
7224 8172 2.166829 TGGCCATCACAACCACATAAC 58.833 47.619 0.00 0.00 0.00 1.89 R
7260 8208 6.931281 GCAGCATATAGTAGGATCAACTGAAA 59.069 38.462 9.57 0.00 0.00 2.69 R
7609 8559 4.549458 CTTCGGTCATGCTTGTGAATTTT 58.451 39.130 0.00 0.00 0.00 1.82 R
9186 10162 0.107017 AATTCTCTGCATGACGGGGG 60.107 55.000 0.00 0.00 0.00 5.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.613428 AGATACTTTCAACCAAATATCATTCGA 57.387 29.630 0.00 0.00 0.00 3.71
42 43 8.915871 ACTTTCAACCAAATATCATTCGAATG 57.084 30.769 28.48 28.48 37.75 2.67
97 98 5.767816 AACAAAGACAACAATGTACTCCC 57.232 39.130 0.00 0.00 40.74 4.30
98 99 5.048846 ACAAAGACAACAATGTACTCCCT 57.951 39.130 0.00 0.00 40.74 4.20
99 100 5.063880 ACAAAGACAACAATGTACTCCCTC 58.936 41.667 0.00 0.00 40.74 4.30
100 101 3.983044 AGACAACAATGTACTCCCTCC 57.017 47.619 0.00 0.00 40.74 4.30
101 102 2.233922 AGACAACAATGTACTCCCTCCG 59.766 50.000 0.00 0.00 40.74 4.63
102 103 1.975680 ACAACAATGTACTCCCTCCGT 59.024 47.619 0.00 0.00 38.24 4.69
103 104 2.370849 ACAACAATGTACTCCCTCCGTT 59.629 45.455 0.00 0.00 38.24 4.44
104 105 3.181448 ACAACAATGTACTCCCTCCGTTT 60.181 43.478 0.00 0.00 38.24 3.60
105 106 3.782656 ACAATGTACTCCCTCCGTTTT 57.217 42.857 0.00 0.00 0.00 2.43
106 107 4.895668 ACAATGTACTCCCTCCGTTTTA 57.104 40.909 0.00 0.00 0.00 1.52
107 108 5.231702 ACAATGTACTCCCTCCGTTTTAA 57.768 39.130 0.00 0.00 0.00 1.52
108 109 5.623169 ACAATGTACTCCCTCCGTTTTAAA 58.377 37.500 0.00 0.00 0.00 1.52
109 110 6.063404 ACAATGTACTCCCTCCGTTTTAAAA 58.937 36.000 0.00 0.00 0.00 1.52
110 111 6.717997 ACAATGTACTCCCTCCGTTTTAAAAT 59.282 34.615 3.52 0.00 0.00 1.82
111 112 7.884354 ACAATGTACTCCCTCCGTTTTAAAATA 59.116 33.333 3.52 0.00 0.00 1.40
112 113 8.395633 CAATGTACTCCCTCCGTTTTAAAATAG 58.604 37.037 3.52 1.99 0.00 1.73
113 114 7.243604 TGTACTCCCTCCGTTTTAAAATAGA 57.756 36.000 3.52 3.61 0.00 1.98
114 115 7.854337 TGTACTCCCTCCGTTTTAAAATAGAT 58.146 34.615 3.52 0.00 0.00 1.98
115 116 7.767198 TGTACTCCCTCCGTTTTAAAATAGATG 59.233 37.037 3.52 2.01 0.00 2.90
116 117 6.954232 ACTCCCTCCGTTTTAAAATAGATGA 58.046 36.000 3.52 3.96 0.00 2.92
117 118 7.574607 ACTCCCTCCGTTTTAAAATAGATGAT 58.425 34.615 3.52 0.00 0.00 2.45
118 119 8.053355 ACTCCCTCCGTTTTAAAATAGATGATT 58.947 33.333 3.52 0.00 0.00 2.57
119 120 8.446599 TCCCTCCGTTTTAAAATAGATGATTC 57.553 34.615 3.52 0.00 0.00 2.52
120 121 8.050325 TCCCTCCGTTTTAAAATAGATGATTCA 58.950 33.333 3.52 0.00 0.00 2.57
121 122 8.682710 CCCTCCGTTTTAAAATAGATGATTCAA 58.317 33.333 3.52 0.00 0.00 2.69
122 123 9.503427 CCTCCGTTTTAAAATAGATGATTCAAC 57.497 33.333 3.52 0.00 0.00 3.18
166 167 9.719355 ATAAAGTTGGGTCATTTATTTTGGAAC 57.281 29.630 0.00 0.00 0.00 3.62
167 168 5.778862 AGTTGGGTCATTTATTTTGGAACG 58.221 37.500 0.00 0.00 0.00 3.95
168 169 4.792521 TGGGTCATTTATTTTGGAACGG 57.207 40.909 0.00 0.00 0.00 4.44
169 170 4.408276 TGGGTCATTTATTTTGGAACGGA 58.592 39.130 0.00 0.00 0.00 4.69
170 171 4.461081 TGGGTCATTTATTTTGGAACGGAG 59.539 41.667 0.00 0.00 0.00 4.63
171 172 4.142249 GGGTCATTTATTTTGGAACGGAGG 60.142 45.833 0.00 0.00 0.00 4.30
172 173 4.142249 GGTCATTTATTTTGGAACGGAGGG 60.142 45.833 0.00 0.00 0.00 4.30
173 174 4.703093 GTCATTTATTTTGGAACGGAGGGA 59.297 41.667 0.00 0.00 0.00 4.20
174 175 4.947388 TCATTTATTTTGGAACGGAGGGAG 59.053 41.667 0.00 0.00 0.00 4.30
207 208 2.556534 GCTTTCATTTGCGAGCAGAT 57.443 45.000 0.00 0.00 35.29 2.90
208 209 2.448219 GCTTTCATTTGCGAGCAGATC 58.552 47.619 0.00 0.00 35.29 2.75
209 210 2.159476 GCTTTCATTTGCGAGCAGATCA 60.159 45.455 0.00 0.00 35.29 2.92
210 211 3.488721 GCTTTCATTTGCGAGCAGATCAT 60.489 43.478 0.00 0.00 35.29 2.45
211 212 3.957671 TTCATTTGCGAGCAGATCATC 57.042 42.857 0.00 0.00 0.00 2.92
212 213 2.908916 TCATTTGCGAGCAGATCATCA 58.091 42.857 0.00 0.00 0.00 3.07
213 214 3.272581 TCATTTGCGAGCAGATCATCAA 58.727 40.909 0.00 0.00 0.00 2.57
214 215 3.881089 TCATTTGCGAGCAGATCATCAAT 59.119 39.130 0.00 0.00 0.00 2.57
387 388 1.686325 ATCGACGCCCACCATTAGCT 61.686 55.000 0.00 0.00 0.00 3.32
883 884 2.202570 CGCCGAGTTCCGATTCGT 60.203 61.111 5.20 0.00 41.76 3.85
1203 1204 1.203287 GTGCTCCTTTGGATTTGCTCC 59.797 52.381 0.00 0.00 45.19 4.70
1389 1394 1.087771 GGATACAAAGCGACGGGGTG 61.088 60.000 0.00 0.00 0.00 4.61
1421 1426 2.359967 GCTAAGGTCCTGCGGGAGT 61.360 63.158 16.70 6.02 43.12 3.85
1450 1455 8.372521 GTGATTGTAGTAATTTTTGCGGAAATG 58.627 33.333 1.94 0.00 30.06 2.32
1756 1761 9.891828 CTACAGCAATTTGTGTTATACTTTGAA 57.108 29.630 9.01 0.00 32.56 2.69
1912 1917 6.239714 TGGTATTCCTTTTGCCAAGCAATTAA 60.240 34.615 2.38 0.00 40.36 1.40
1913 1918 7.690301 TGGTATTCCTTTTGCCAAGCAATTAAA 60.690 33.333 2.38 0.00 40.36 1.52
2008 2196 0.804933 GTACGCAGCCTTTCCCTACG 60.805 60.000 0.00 0.00 0.00 3.51
2225 2414 1.235724 GTTTCCAGGACTTGAACCCG 58.764 55.000 0.00 0.00 0.00 5.28
2285 2474 2.123982 GGCTCCCCTTCTGCCATG 60.124 66.667 0.00 0.00 45.46 3.66
2286 2475 2.832201 GCTCCCCTTCTGCCATGC 60.832 66.667 0.00 0.00 0.00 4.06
2287 2476 2.679092 CTCCCCTTCTGCCATGCA 59.321 61.111 0.00 0.00 36.92 3.96
2288 2477 1.000521 CTCCCCTTCTGCCATGCAA 60.001 57.895 0.00 0.00 38.41 4.08
2289 2478 0.396695 CTCCCCTTCTGCCATGCAAT 60.397 55.000 0.00 0.00 38.41 3.56
2290 2479 0.041535 TCCCCTTCTGCCATGCAATT 59.958 50.000 0.00 0.00 38.41 2.32
2291 2480 1.287442 TCCCCTTCTGCCATGCAATTA 59.713 47.619 0.00 0.00 38.41 1.40
2318 2507 6.538945 TGTAAATTTTTAATGGAGGGGCTC 57.461 37.500 0.00 0.00 0.00 4.70
2324 2513 0.839946 TAATGGAGGGGCTCTTCTGC 59.160 55.000 0.00 0.00 0.00 4.26
2349 2538 7.116805 GCCATTTACTTGGACTTTTGAGATTTG 59.883 37.037 0.00 0.00 39.25 2.32
2393 2582 8.032952 TGCATCAGTGTTCTTGATAGTAAAAG 57.967 34.615 0.00 0.00 0.00 2.27
2403 2592 8.443937 GTTCTTGATAGTAAAAGGTGCTAACTG 58.556 37.037 0.00 0.00 0.00 3.16
2654 2843 1.134729 ACTTTGCAGGCCAAACTTGTG 60.135 47.619 5.01 0.00 38.46 3.33
2658 2847 1.885887 TGCAGGCCAAACTTGTGTATC 59.114 47.619 5.01 0.00 0.00 2.24
2743 2932 8.201464 TCATATATGGTGTTACCTGTAGTGTTG 58.799 37.037 12.78 0.00 39.58 3.33
2758 2947 1.116308 TGTTGTCACGGTCTCAAGGA 58.884 50.000 0.00 0.00 0.00 3.36
2769 2958 4.715297 ACGGTCTCAAGGATTTACCACTAT 59.285 41.667 0.00 0.00 42.04 2.12
2770 2959 5.895534 ACGGTCTCAAGGATTTACCACTATA 59.104 40.000 0.00 0.00 42.04 1.31
2844 3039 7.766283 TGTTGAATGTTGTCTTGAATGTTACA 58.234 30.769 0.00 0.00 0.00 2.41
2865 3061 6.763715 ACATAGTGTTATGGGTGGACATAT 57.236 37.500 0.27 0.00 40.83 1.78
2880 3076 6.016527 GGTGGACATATCGTAGTAGTCAATGA 60.017 42.308 0.00 0.00 0.00 2.57
2892 3088 7.220300 CGTAGTAGTCAATGACATGTTACCTTC 59.780 40.741 16.38 2.79 34.60 3.46
2924 3121 6.150140 GGGAGACATGATGTTATCAAATAGGC 59.850 42.308 0.00 0.00 43.50 3.93
2939 3136 0.179037 TAGGCCAGCAGATGACATGC 60.179 55.000 5.01 0.00 44.18 4.06
2952 3149 3.515286 CATGCCTGCTTGCCTCGG 61.515 66.667 0.00 0.00 0.00 4.63
3030 3227 2.190170 TTCGCAACCACCGTGCATT 61.190 52.632 0.00 0.00 42.33 3.56
3078 3275 3.980646 TTGCAAACACACCTATCACAC 57.019 42.857 0.00 0.00 0.00 3.82
3146 3343 2.426522 TGTGCATCTCACTTGTTAGCC 58.573 47.619 0.00 0.00 45.81 3.93
3179 3376 1.823169 CTTGCTGCTTTGGTGCCCAT 61.823 55.000 0.00 0.00 31.53 4.00
3341 3538 2.191981 ATACTCCCTCCGTCCCAAAT 57.808 50.000 0.00 0.00 0.00 2.32
3343 3540 1.961133 ACTCCCTCCGTCCCAAATTA 58.039 50.000 0.00 0.00 0.00 1.40
3350 3547 2.671396 CTCCGTCCCAAATTACTTGTCG 59.329 50.000 0.00 0.00 32.65 4.35
3351 3548 1.129811 CCGTCCCAAATTACTTGTCGC 59.870 52.381 0.00 0.00 32.65 5.19
3352 3549 2.073816 CGTCCCAAATTACTTGTCGCT 58.926 47.619 0.00 0.00 32.65 4.93
3355 3552 3.500680 GTCCCAAATTACTTGTCGCTGAA 59.499 43.478 0.00 0.00 32.65 3.02
3356 3553 4.023536 GTCCCAAATTACTTGTCGCTGAAA 60.024 41.667 0.00 0.00 32.65 2.69
3369 3576 6.101650 TGTCGCTGAAATGGATGTATCTAT 57.898 37.500 0.00 0.00 0.00 1.98
3370 3577 7.227049 TGTCGCTGAAATGGATGTATCTATA 57.773 36.000 0.00 0.00 0.00 1.31
3402 3609 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
3403 3610 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
3404 3611 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
3405 3612 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
3408 3615 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
3409 3616 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
3410 3617 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
3412 3619 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
3413 3620 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
3414 3621 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
3415 3622 3.301579 CCATACGTGCGACAAGTAATTCG 60.302 47.826 0.00 0.00 32.82 3.34
3416 3623 1.065358 ACGTGCGACAAGTAATTCGG 58.935 50.000 0.00 0.00 35.73 4.30
3542 3759 6.521162 TGTGTAGTGCTATACATGTATTGGG 58.479 40.000 22.90 14.18 37.93 4.12
3597 3814 1.492599 GGATTCTTTGCTCCCTAGGCT 59.507 52.381 2.05 0.00 0.00 4.58
3619 3836 5.524971 TGCCGTTATAACTATGTAGTGCT 57.475 39.130 13.56 0.00 36.50 4.40
3620 3837 6.638096 TGCCGTTATAACTATGTAGTGCTA 57.362 37.500 13.56 0.00 36.50 3.49
3742 3959 8.462589 TTGTATTTCAGGCATTGCTCAATATA 57.537 30.769 8.82 2.74 0.00 0.86
3743 3960 8.640063 TGTATTTCAGGCATTGCTCAATATAT 57.360 30.769 8.82 0.00 0.00 0.86
3868 4808 2.158914 TGCTGTTTGACTGCTCTTCTGA 60.159 45.455 10.53 0.00 42.56 3.27
4678 5621 6.127083 TGCACATATCAGAATTCAGACCAGTA 60.127 38.462 8.44 0.00 0.00 2.74
4788 5731 5.447279 GGTGTGCTGTTTATTCAATACCTCG 60.447 44.000 0.00 0.00 0.00 4.63
4790 5733 6.037172 GTGTGCTGTTTATTCAATACCTCGAT 59.963 38.462 0.00 0.00 0.00 3.59
4891 5837 0.914644 ATGCAGCTACCACATGGACT 59.085 50.000 4.53 0.00 38.94 3.85
4970 5916 4.883585 TGTGTCAAGTGCTGAGAAATCTTT 59.116 37.500 0.00 0.00 33.60 2.52
4982 5928 7.498239 TGCTGAGAAATCTTTGAGATATTCAGG 59.502 37.037 17.97 9.26 37.22 3.86
5002 5948 6.291377 TCAGGCTCCATAGTAAAATTAGCAG 58.709 40.000 0.00 0.00 0.00 4.24
5160 6106 2.172717 AGGTTGAACAAGCACAGTACCT 59.827 45.455 16.88 2.81 40.96 3.08
5180 6126 8.499406 AGTACCTTGTCCATTATAATTAGGCAA 58.501 33.333 10.40 10.40 0.00 4.52
5226 6172 3.701532 TCTTGTTTTTGTAACCCTGCG 57.298 42.857 0.00 0.00 0.00 5.18
5330 6276 5.301551 TGCTTCTGGATTGTTTTCTTGCTTA 59.698 36.000 0.00 0.00 0.00 3.09
5368 6314 8.018677 TGAACTTACAGAAGCTTATCTTTTCG 57.981 34.615 0.00 0.00 35.97 3.46
5413 6359 9.797642 TCATTTATCACATTGCCTTATGATAGT 57.202 29.630 0.00 0.00 35.90 2.12
5417 6363 9.929180 TTATCACATTGCCTTATGATAGTACTC 57.071 33.333 0.00 0.00 35.90 2.59
5418 6364 6.759272 TCACATTGCCTTATGATAGTACTCC 58.241 40.000 0.00 0.00 0.00 3.85
5419 6365 5.934625 CACATTGCCTTATGATAGTACTCCC 59.065 44.000 0.00 0.00 0.00 4.30
5420 6366 5.846714 ACATTGCCTTATGATAGTACTCCCT 59.153 40.000 0.00 0.00 0.00 4.20
5421 6367 6.014156 ACATTGCCTTATGATAGTACTCCCTC 60.014 42.308 0.00 0.00 0.00 4.30
5422 6368 4.417437 TGCCTTATGATAGTACTCCCTCC 58.583 47.826 0.00 0.00 0.00 4.30
5423 6369 3.444388 GCCTTATGATAGTACTCCCTCCG 59.556 52.174 0.00 0.00 0.00 4.63
5424 6370 4.664392 CCTTATGATAGTACTCCCTCCGT 58.336 47.826 0.00 0.00 0.00 4.69
5425 6371 4.701171 CCTTATGATAGTACTCCCTCCGTC 59.299 50.000 0.00 0.00 0.00 4.79
5426 6372 2.653234 TGATAGTACTCCCTCCGTCC 57.347 55.000 0.00 0.00 0.00 4.79
5427 6373 1.144503 TGATAGTACTCCCTCCGTCCC 59.855 57.143 0.00 0.00 0.00 4.46
5428 6374 1.144503 GATAGTACTCCCTCCGTCCCA 59.855 57.143 0.00 0.00 0.00 4.37
5429 6375 1.229131 TAGTACTCCCTCCGTCCCAT 58.771 55.000 0.00 0.00 0.00 4.00
5430 6376 1.229131 AGTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
5431 6377 1.572415 AGTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
5432 6378 2.179424 AGTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
5433 6379 3.400322 AGTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
5434 6380 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
5435 6381 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
5436 6382 4.611367 ACTCCCTCCGTCCCATAATATAG 58.389 47.826 0.00 0.00 0.00 1.31
5437 6383 3.961408 CTCCCTCCGTCCCATAATATAGG 59.039 52.174 0.00 0.00 0.00 2.57
5438 6384 3.599240 TCCCTCCGTCCCATAATATAGGA 59.401 47.826 0.00 0.00 0.00 2.94
5439 6385 4.046231 TCCCTCCGTCCCATAATATAGGAA 59.954 45.833 0.00 0.00 0.00 3.36
5440 6386 4.161754 CCCTCCGTCCCATAATATAGGAAC 59.838 50.000 0.00 0.00 0.00 3.62
5441 6387 4.142227 CCTCCGTCCCATAATATAGGAACG 60.142 50.000 0.00 0.00 0.00 3.95
5442 6388 4.410099 TCCGTCCCATAATATAGGAACGT 58.590 43.478 0.00 0.00 0.00 3.99
5443 6389 4.834496 TCCGTCCCATAATATAGGAACGTT 59.166 41.667 0.00 0.00 0.00 3.99
5444 6390 5.305128 TCCGTCCCATAATATAGGAACGTTT 59.695 40.000 0.46 0.00 0.00 3.60
5445 6391 5.993441 CCGTCCCATAATATAGGAACGTTTT 59.007 40.000 0.46 0.00 0.00 2.43
5446 6392 6.484308 CCGTCCCATAATATAGGAACGTTTTT 59.516 38.462 0.46 0.00 0.00 1.94
5447 6393 7.349711 CGTCCCATAATATAGGAACGTTTTTG 58.650 38.462 0.46 0.00 0.00 2.44
5448 6394 7.225145 CGTCCCATAATATAGGAACGTTTTTGA 59.775 37.037 0.46 0.00 0.00 2.69
5449 6395 8.340443 GTCCCATAATATAGGAACGTTTTTGAC 58.660 37.037 0.46 0.00 0.00 3.18
5450 6396 8.047911 TCCCATAATATAGGAACGTTTTTGACA 58.952 33.333 0.46 0.00 0.00 3.58
5451 6397 8.126700 CCCATAATATAGGAACGTTTTTGACAC 58.873 37.037 0.46 0.00 0.00 3.67
5452 6398 8.889717 CCATAATATAGGAACGTTTTTGACACT 58.110 33.333 0.46 0.00 0.00 3.55
5456 6402 4.483476 AGGAACGTTTTTGACACTATGC 57.517 40.909 0.46 0.00 0.00 3.14
5457 6403 4.134563 AGGAACGTTTTTGACACTATGCT 58.865 39.130 0.46 0.00 0.00 3.79
5458 6404 5.302360 AGGAACGTTTTTGACACTATGCTA 58.698 37.500 0.46 0.00 0.00 3.49
5459 6405 5.408604 AGGAACGTTTTTGACACTATGCTAG 59.591 40.000 0.46 0.00 0.00 3.42
5460 6406 5.178809 GGAACGTTTTTGACACTATGCTAGT 59.821 40.000 0.46 0.00 40.28 2.57
5510 6456 8.145122 GGACAGAGGGAGTAACATTTAATCTAG 58.855 40.741 0.00 0.00 0.00 2.43
5540 6486 2.909662 TGGTGTTCCATGGTCTCATGTA 59.090 45.455 12.58 0.00 46.96 2.29
5636 6582 4.261578 TCCAGTTCTTACTTAACACCGG 57.738 45.455 0.00 0.00 30.26 5.28
5735 6681 6.237154 TGACAATAAGATCACAATGGACACA 58.763 36.000 0.00 0.00 0.00 3.72
6012 6959 6.986817 CGAGTTTCAGGACAGATATGGTAATT 59.013 38.462 0.00 0.00 0.00 1.40
6037 6984 5.316327 TGTTATGTGTTGTTCAAGTTGCA 57.684 34.783 0.00 0.00 0.00 4.08
6116 7063 9.472361 CATTTTGAGTCATCTGTTCTTTCAAAT 57.528 29.630 0.00 0.00 34.31 2.32
6252 7199 3.879892 GCATCTTTTGAGACAGATACCCC 59.120 47.826 0.00 0.00 0.00 4.95
6321 7268 7.066525 CGGGGCTAACACTGAAATAAAATAAGA 59.933 37.037 0.00 0.00 0.00 2.10
6617 7565 7.712639 TCATCCTCTGCTATAAATGTTGAAGTC 59.287 37.037 0.00 0.00 0.00 3.01
6825 7773 6.207417 ACAAGCTGTTGTTTGTAGAGCATATT 59.793 34.615 0.00 0.00 45.00 1.28
6953 7901 3.374988 TGTGTTTTTCAGCTGAGACTGTG 59.625 43.478 17.43 0.00 38.84 3.66
7102 8050 6.271585 ACTGAGGTAATTCATGGATGGAAT 57.728 37.500 0.00 0.00 36.57 3.01
7150 8098 6.238731 CGTGTGCATGTATATTTCCCAAGATT 60.239 38.462 0.00 0.00 0.00 2.40
7155 8103 7.041167 TGCATGTATATTTCCCAAGATTTCTCG 60.041 37.037 0.00 0.00 0.00 4.04
7166 8114 6.326583 TCCCAAGATTTCTCGGTAGAATATGT 59.673 38.462 0.00 0.00 41.36 2.29
7196 8144 7.880195 CCATTACACTATGCTTTAGCTCCTTAT 59.120 37.037 3.10 0.00 42.66 1.73
7224 8172 3.393800 TGTTCTTTCAAGAGCTCCTTCG 58.606 45.455 10.93 0.00 37.20 3.79
7260 8208 1.901833 GGCCAACAGGAATTTCATGGT 59.098 47.619 14.84 5.89 31.56 3.55
7581 8531 2.862541 TGCTTACTGTGCACTTCCATT 58.137 42.857 19.41 0.00 35.31 3.16
7582 8532 2.553602 TGCTTACTGTGCACTTCCATTG 59.446 45.455 19.41 3.68 35.31 2.82
7583 8533 2.554032 GCTTACTGTGCACTTCCATTGT 59.446 45.455 19.41 7.78 0.00 2.71
7584 8534 3.004734 GCTTACTGTGCACTTCCATTGTT 59.995 43.478 19.41 0.00 0.00 2.83
7609 8559 4.799715 TTTTCCAACTAAGGTCCCAAGA 57.200 40.909 0.00 0.00 0.00 3.02
7696 8646 5.012975 AGAGGAAGATAAATCATCTGAGCCC 59.987 44.000 0.00 0.00 43.56 5.19
7754 8704 4.156556 TGATATGTCTTCTGTTTTGCCTGC 59.843 41.667 0.00 0.00 0.00 4.85
7801 8751 4.267536 CTTGAGAGCAATTCCATCCTTCA 58.732 43.478 0.00 0.00 32.68 3.02
7835 8785 1.656587 TGTCTAGTCCCCATGCTGTT 58.343 50.000 0.00 0.00 0.00 3.16
8585 9552 1.135575 GCAGGAGCGTGAAAATCCAAG 60.136 52.381 0.00 0.00 35.45 3.61
8838 9813 7.972301 TGATTCCATGGGTTTAGAAAATTTGT 58.028 30.769 13.02 0.00 0.00 2.83
8840 9815 9.936759 GATTCCATGGGTTTAGAAAATTTGTAA 57.063 29.630 13.02 0.00 0.00 2.41
8969 9944 8.491045 TCCATTTTCCAGTTCCTAAAAGAAAT 57.509 30.769 0.00 0.00 0.00 2.17
9077 10052 8.653338 CAAGAGATAAATGTTGGCAATTTCTTG 58.347 33.333 1.92 8.91 35.36 3.02
9154 10129 5.359576 ACTGAATTGTGCTTGAGTGGTTTAA 59.640 36.000 0.00 0.00 0.00 1.52
9186 10162 7.253422 ACTGCTGTCAAGTATATGCAATTTTC 58.747 34.615 0.00 0.00 0.00 2.29
9345 10321 3.665745 TTCAGAGCATTTTTGCTTCCC 57.334 42.857 1.51 0.00 46.36 3.97
9670 10668 7.013559 TGGTAATTTGGCTCTGTTGATATGATG 59.986 37.037 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.613428 TCGAATGATATTTGGTTGAAAGTATCT 57.387 29.630 0.00 0.00 0.00 1.98
17 18 8.739039 TCATTCGAATGATATTTGGTTGAAAGT 58.261 29.630 31.83 0.00 40.32 2.66
18 19 9.571810 TTCATTCGAATGATATTTGGTTGAAAG 57.428 29.630 34.66 7.61 44.27 2.62
20 21 9.734620 GATTCATTCGAATGATATTTGGTTGAA 57.265 29.630 34.66 19.76 44.27 2.69
21 22 9.123902 AGATTCATTCGAATGATATTTGGTTGA 57.876 29.630 34.66 19.63 44.27 3.18
24 25 9.559732 TGTAGATTCATTCGAATGATATTTGGT 57.440 29.630 34.66 19.67 44.27 3.67
71 72 9.174166 GGGAGTACATTGTTGTCTTTGTTATAT 57.826 33.333 0.00 0.00 37.28 0.86
72 73 8.380099 AGGGAGTACATTGTTGTCTTTGTTATA 58.620 33.333 0.00 0.00 37.28 0.98
73 74 7.231467 AGGGAGTACATTGTTGTCTTTGTTAT 58.769 34.615 0.00 0.00 37.28 1.89
74 75 6.597562 AGGGAGTACATTGTTGTCTTTGTTA 58.402 36.000 0.00 0.00 37.28 2.41
75 76 5.445964 AGGGAGTACATTGTTGTCTTTGTT 58.554 37.500 0.00 0.00 37.28 2.83
76 77 5.048846 AGGGAGTACATTGTTGTCTTTGT 57.951 39.130 0.00 0.00 37.28 2.83
77 78 4.455877 GGAGGGAGTACATTGTTGTCTTTG 59.544 45.833 0.00 0.00 37.28 2.77
78 79 4.652822 GGAGGGAGTACATTGTTGTCTTT 58.347 43.478 0.00 0.00 37.28 2.52
79 80 3.306780 CGGAGGGAGTACATTGTTGTCTT 60.307 47.826 0.00 0.00 37.28 3.01
80 81 2.233922 CGGAGGGAGTACATTGTTGTCT 59.766 50.000 0.00 0.00 37.28 3.41
81 82 2.028385 ACGGAGGGAGTACATTGTTGTC 60.028 50.000 0.00 0.00 37.28 3.18
82 83 1.975680 ACGGAGGGAGTACATTGTTGT 59.024 47.619 0.00 0.00 39.98 3.32
83 84 2.762535 ACGGAGGGAGTACATTGTTG 57.237 50.000 0.00 0.00 0.00 3.33
84 85 3.782656 AAACGGAGGGAGTACATTGTT 57.217 42.857 0.00 0.00 0.00 2.83
85 86 3.782656 AAAACGGAGGGAGTACATTGT 57.217 42.857 0.00 0.00 0.00 2.71
86 87 6.563222 TTTTAAAACGGAGGGAGTACATTG 57.437 37.500 0.00 0.00 0.00 2.82
87 88 8.323567 TCTATTTTAAAACGGAGGGAGTACATT 58.676 33.333 1.97 0.00 0.00 2.71
88 89 7.854337 TCTATTTTAAAACGGAGGGAGTACAT 58.146 34.615 1.97 0.00 0.00 2.29
89 90 7.243604 TCTATTTTAAAACGGAGGGAGTACA 57.756 36.000 1.97 0.00 0.00 2.90
90 91 7.983484 TCATCTATTTTAAAACGGAGGGAGTAC 59.017 37.037 1.97 0.00 0.00 2.73
91 92 8.081517 TCATCTATTTTAAAACGGAGGGAGTA 57.918 34.615 1.97 0.00 0.00 2.59
92 93 6.954232 TCATCTATTTTAAAACGGAGGGAGT 58.046 36.000 1.97 0.00 0.00 3.85
93 94 8.451908 AATCATCTATTTTAAAACGGAGGGAG 57.548 34.615 1.97 0.00 0.00 4.30
94 95 8.050325 TGAATCATCTATTTTAAAACGGAGGGA 58.950 33.333 1.97 7.05 0.00 4.20
95 96 8.220755 TGAATCATCTATTTTAAAACGGAGGG 57.779 34.615 1.97 2.46 0.00 4.30
96 97 9.503427 GTTGAATCATCTATTTTAAAACGGAGG 57.497 33.333 1.97 6.55 0.00 4.30
140 141 9.719355 GTTCCAAAATAAATGACCCAACTTTAT 57.281 29.630 0.00 0.00 0.00 1.40
141 142 7.868415 CGTTCCAAAATAAATGACCCAACTTTA 59.132 33.333 0.00 0.00 0.00 1.85
142 143 6.704050 CGTTCCAAAATAAATGACCCAACTTT 59.296 34.615 0.00 0.00 0.00 2.66
143 144 6.220201 CGTTCCAAAATAAATGACCCAACTT 58.780 36.000 0.00 0.00 0.00 2.66
144 145 5.279256 CCGTTCCAAAATAAATGACCCAACT 60.279 40.000 0.00 0.00 0.00 3.16
145 146 4.926832 CCGTTCCAAAATAAATGACCCAAC 59.073 41.667 0.00 0.00 0.00 3.77
146 147 4.833380 TCCGTTCCAAAATAAATGACCCAA 59.167 37.500 0.00 0.00 0.00 4.12
147 148 4.408276 TCCGTTCCAAAATAAATGACCCA 58.592 39.130 0.00 0.00 0.00 4.51
148 149 4.142249 CCTCCGTTCCAAAATAAATGACCC 60.142 45.833 0.00 0.00 0.00 4.46
149 150 4.142249 CCCTCCGTTCCAAAATAAATGACC 60.142 45.833 0.00 0.00 0.00 4.02
150 151 4.703093 TCCCTCCGTTCCAAAATAAATGAC 59.297 41.667 0.00 0.00 0.00 3.06
151 152 4.924625 TCCCTCCGTTCCAAAATAAATGA 58.075 39.130 0.00 0.00 0.00 2.57
152 153 4.705023 ACTCCCTCCGTTCCAAAATAAATG 59.295 41.667 0.00 0.00 0.00 2.32
153 154 4.930696 ACTCCCTCCGTTCCAAAATAAAT 58.069 39.130 0.00 0.00 0.00 1.40
154 155 4.376225 ACTCCCTCCGTTCCAAAATAAA 57.624 40.909 0.00 0.00 0.00 1.40
155 156 5.502089 TTACTCCCTCCGTTCCAAAATAA 57.498 39.130 0.00 0.00 0.00 1.40
156 157 5.703730 ATTACTCCCTCCGTTCCAAAATA 57.296 39.130 0.00 0.00 0.00 1.40
157 158 4.586306 ATTACTCCCTCCGTTCCAAAAT 57.414 40.909 0.00 0.00 0.00 1.82
158 159 5.703730 ATATTACTCCCTCCGTTCCAAAA 57.296 39.130 0.00 0.00 0.00 2.44
159 160 5.190132 TGAATATTACTCCCTCCGTTCCAAA 59.810 40.000 0.00 0.00 0.00 3.28
160 161 4.717778 TGAATATTACTCCCTCCGTTCCAA 59.282 41.667 0.00 0.00 0.00 3.53
161 162 4.291792 TGAATATTACTCCCTCCGTTCCA 58.708 43.478 0.00 0.00 0.00 3.53
162 163 4.950205 TGAATATTACTCCCTCCGTTCC 57.050 45.455 0.00 0.00 0.00 3.62
163 164 6.973474 CGATATGAATATTACTCCCTCCGTTC 59.027 42.308 0.00 0.00 0.00 3.95
164 165 6.627508 GCGATATGAATATTACTCCCTCCGTT 60.628 42.308 0.00 0.00 0.00 4.44
165 166 5.163540 GCGATATGAATATTACTCCCTCCGT 60.164 44.000 0.00 0.00 0.00 4.69
166 167 5.067936 AGCGATATGAATATTACTCCCTCCG 59.932 44.000 0.00 0.00 0.00 4.63
167 168 6.472686 AGCGATATGAATATTACTCCCTCC 57.527 41.667 0.00 0.00 0.00 4.30
168 169 8.035394 TGAAAGCGATATGAATATTACTCCCTC 58.965 37.037 0.00 0.00 0.00 4.30
169 170 7.907389 TGAAAGCGATATGAATATTACTCCCT 58.093 34.615 0.00 0.00 0.00 4.20
170 171 8.723942 ATGAAAGCGATATGAATATTACTCCC 57.276 34.615 0.00 0.00 0.00 4.30
173 174 9.831737 GCAAATGAAAGCGATATGAATATTACT 57.168 29.630 0.00 0.00 0.00 2.24
205 206 8.777865 TCCCGTAATGATAAGAATTGATGATC 57.222 34.615 0.00 0.00 0.00 2.92
206 207 9.573166 TTTCCCGTAATGATAAGAATTGATGAT 57.427 29.630 0.00 0.00 0.00 2.45
207 208 8.972458 TTTCCCGTAATGATAAGAATTGATGA 57.028 30.769 0.00 0.00 0.00 2.92
208 209 9.056005 TCTTTCCCGTAATGATAAGAATTGATG 57.944 33.333 0.00 0.00 0.00 3.07
209 210 9.627123 TTCTTTCCCGTAATGATAAGAATTGAT 57.373 29.630 0.00 0.00 29.48 2.57
210 211 9.456147 TTTCTTTCCCGTAATGATAAGAATTGA 57.544 29.630 0.00 0.00 33.25 2.57
836 837 0.587285 CGGACGACTAAGGAGGATCG 59.413 60.000 0.00 0.00 40.39 3.69
883 884 2.131067 TGTGGCGTGAGGTGAGTGA 61.131 57.895 0.00 0.00 0.00 3.41
1203 1204 0.782384 GACGAACCGCGCCAATATAG 59.218 55.000 0.00 0.00 46.04 1.31
1312 1313 7.661536 ACAATCTAAACTCATAGAGGCACTA 57.338 36.000 0.00 0.00 41.55 2.74
1389 1394 3.939592 GACCTTAGCCTTTGATGTACCAC 59.060 47.826 0.00 0.00 0.00 4.16
1421 1426 7.426410 TCCGCAAAAATTACTACAATCACAAA 58.574 30.769 0.00 0.00 0.00 2.83
1450 1455 2.223377 CGAAGAAACAGGCCAAGTACAC 59.777 50.000 5.01 0.00 0.00 2.90
1536 1541 5.221028 CCACAAGTAAGCACATCAGTTCAAA 60.221 40.000 0.00 0.00 0.00 2.69
1639 1644 4.571984 TCATTCCTCTAATCACATGCAACG 59.428 41.667 0.00 0.00 0.00 4.10
1756 1761 8.823220 AACTATCATTTTAAGTAAGCATGGGT 57.177 30.769 0.00 0.00 0.00 4.51
1914 1919 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
2008 2196 4.134563 TGGAAACAGCCTCTTACAGAAAC 58.865 43.478 0.00 0.00 35.01 2.78
2097 2285 1.904378 GCACCGGGTTGCCCTTTAA 60.904 57.895 6.32 0.00 42.67 1.52
2098 2286 2.282603 GCACCGGGTTGCCCTTTA 60.283 61.111 6.32 0.00 42.67 1.85
2279 2468 9.664332 AAAAATTTACATAGTAATTGCATGGCA 57.336 25.926 0.00 0.00 36.47 4.92
2290 2479 9.138596 GCCCCTCCATTAAAAATTTACATAGTA 57.861 33.333 0.00 0.00 0.00 1.82
2291 2480 7.844269 AGCCCCTCCATTAAAAATTTACATAGT 59.156 33.333 0.00 0.00 0.00 2.12
2306 2495 1.611965 GCAGAAGAGCCCCTCCATT 59.388 57.895 0.00 0.00 0.00 3.16
2318 2507 5.712152 AAAGTCCAAGTAAATGGCAGAAG 57.288 39.130 0.00 0.00 40.46 2.85
2324 2513 8.143835 ACAAATCTCAAAAGTCCAAGTAAATGG 58.856 33.333 0.00 0.00 42.12 3.16
2349 2538 6.372381 TGATGCATACCTGTATCATTGCATAC 59.628 38.462 13.27 9.34 45.79 2.39
2393 2582 4.246458 CACTAAGGAGAACAGTTAGCACC 58.754 47.826 0.00 0.00 0.00 5.01
2403 2592 3.055819 TCCATGAGTGCACTAAGGAGAAC 60.056 47.826 21.73 5.06 0.00 3.01
2625 2814 1.490910 GGCCTGCAAAGTAGGTATCCT 59.509 52.381 0.00 0.00 37.64 3.24
2743 2932 3.259902 GGTAAATCCTTGAGACCGTGAC 58.740 50.000 0.00 0.00 0.00 3.67
2758 2947 7.989947 TTTGGGAGAGACTATAGTGGTAAAT 57.010 36.000 10.90 0.00 0.00 1.40
2769 2958 5.425217 TGTTAGCATCATTTGGGAGAGACTA 59.575 40.000 0.00 0.00 0.00 2.59
2770 2959 4.225942 TGTTAGCATCATTTGGGAGAGACT 59.774 41.667 0.00 0.00 0.00 3.24
2844 3039 5.542635 ACGATATGTCCACCCATAACACTAT 59.457 40.000 0.00 0.00 31.44 2.12
2865 3061 6.376299 AGGTAACATGTCATTGACTACTACGA 59.624 38.462 17.26 0.00 41.41 3.43
2880 3076 2.615493 CCCGCAGAAGAAGGTAACATGT 60.615 50.000 0.00 0.00 41.41 3.21
2892 3088 1.134580 ACATCATGTCTCCCGCAGAAG 60.135 52.381 0.00 0.00 30.72 2.85
2924 3121 2.405143 CAGGCATGTCATCTGCTGG 58.595 57.895 0.00 0.00 39.60 4.85
3030 3227 2.587247 GCTGAGCAGGGAGGTGACA 61.587 63.158 0.00 0.00 0.00 3.58
3062 3259 2.814097 GCCCAGTGTGATAGGTGTGTTT 60.814 50.000 0.00 0.00 0.00 2.83
3094 3291 5.391310 GCAGAGAAAATCAGCGAGATGAAAA 60.391 40.000 0.00 0.00 36.96 2.29
3103 3300 1.085091 AGCAGCAGAGAAAATCAGCG 58.915 50.000 0.00 0.00 44.70 5.18
3341 3538 4.323417 ACATCCATTTCAGCGACAAGTAA 58.677 39.130 0.00 0.00 0.00 2.24
3343 3540 2.783135 ACATCCATTTCAGCGACAAGT 58.217 42.857 0.00 0.00 0.00 3.16
3377 3584 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
3378 3585 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
3380 3587 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
3381 3588 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
3382 3589 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
3395 3602 2.855963 CCGAATTACTTGTCGCACGTAT 59.144 45.455 0.00 0.00 35.93 3.06
3398 3605 1.342555 TCCGAATTACTTGTCGCACG 58.657 50.000 0.00 0.00 35.93 5.34
3401 3608 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
3402 3609 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
3403 3610 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
3404 3611 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
3405 3612 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
3408 3615 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
3409 3616 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
3410 3617 1.856629 TACTCCCTCCGTTCCGAATT 58.143 50.000 0.00 0.00 0.00 2.17
3412 3619 1.108776 CATACTCCCTCCGTTCCGAA 58.891 55.000 0.00 0.00 0.00 4.30
3413 3620 0.033796 ACATACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
3414 3621 0.822164 AACATACTCCCTCCGTTCCG 59.178 55.000 0.00 0.00 0.00 4.30
3415 3622 2.108970 AGAACATACTCCCTCCGTTCC 58.891 52.381 0.00 0.00 37.31 3.62
3416 3623 6.622549 CATATAGAACATACTCCCTCCGTTC 58.377 44.000 0.00 0.00 36.95 3.95
3542 3759 9.590451 AATCACACATGGAAAATCAAACATATC 57.410 29.630 0.00 0.00 0.00 1.63
3597 3814 5.524971 AGCACTACATAGTTATAACGGCA 57.475 39.130 9.91 0.51 33.46 5.69
3701 3918 7.168219 TGAAATACAAGATGTAAGAAGCCAGT 58.832 34.615 0.00 0.00 36.31 4.00
3753 3970 8.276252 GGTTAAACCTTGAAACATCTGCTATA 57.724 34.615 0.00 0.00 34.73 1.31
3952 4892 2.859165 TCCCACTCCACAGAATCAAC 57.141 50.000 0.00 0.00 0.00 3.18
4171 5111 3.805207 ACGGCAAAGAACTACTTGAAGT 58.195 40.909 2.37 2.37 38.98 3.01
4366 5309 2.293122 CAGATGCCGTTCTCAAACCAAA 59.707 45.455 0.00 0.00 31.27 3.28
4367 5310 1.879380 CAGATGCCGTTCTCAAACCAA 59.121 47.619 0.00 0.00 31.27 3.67
4368 5311 1.202758 ACAGATGCCGTTCTCAAACCA 60.203 47.619 0.00 0.00 31.27 3.67
4369 5312 1.197721 CACAGATGCCGTTCTCAAACC 59.802 52.381 0.00 0.00 31.27 3.27
4370 5313 1.400242 GCACAGATGCCGTTCTCAAAC 60.400 52.381 0.00 0.00 46.97 2.93
4850 5796 3.582647 TGAAGTATTTCTCAGTGCCCTCA 59.417 43.478 0.00 0.00 34.31 3.86
4891 5837 9.444600 CTACTAAATTTTGGCTACAGTTAGGAA 57.555 33.333 0.00 0.00 0.00 3.36
4950 5896 5.468072 TCTCAAAGATTTCTCAGCACTTGAC 59.532 40.000 0.00 0.00 0.00 3.18
4970 5916 7.855784 TTTACTATGGAGCCTGAATATCTCA 57.144 36.000 0.00 0.00 0.00 3.27
4982 5928 7.553881 TCAACTGCTAATTTTACTATGGAGC 57.446 36.000 0.00 0.00 0.00 4.70
5002 5948 3.177883 CACCGGTTGTGCAATCAAC 57.822 52.632 2.97 10.85 44.57 3.18
5017 5963 3.243401 GGAACACACAGATTTCCAACACC 60.243 47.826 0.00 0.00 38.98 4.16
5160 6106 7.836685 TCTGGTTTGCCTAATTATAATGGACAA 59.163 33.333 0.00 3.85 35.27 3.18
5163 6109 7.014230 GCTTCTGGTTTGCCTAATTATAATGGA 59.986 37.037 0.00 0.00 35.27 3.41
5180 6126 2.360165 CAGTTTCTGCTTGCTTCTGGTT 59.640 45.455 0.00 0.00 0.00 3.67
5211 6157 5.063691 CGTATATGACGCAGGGTTACAAAAA 59.936 40.000 0.00 0.00 46.27 1.94
5368 6314 2.838202 TGAAACCTGACATCCTAGTCCC 59.162 50.000 0.00 0.00 37.73 4.46
5411 6357 1.229131 TATGGGACGGAGGGAGTACT 58.771 55.000 0.00 0.00 0.00 2.73
5412 6358 2.077687 TTATGGGACGGAGGGAGTAC 57.922 55.000 0.00 0.00 0.00 2.73
5413 6359 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
5414 6360 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
5415 6361 3.961408 CCTATATTATGGGACGGAGGGAG 59.039 52.174 0.00 0.00 31.57 4.30
5416 6362 3.599240 TCCTATATTATGGGACGGAGGGA 59.401 47.826 4.74 0.00 34.71 4.20
5417 6363 3.990369 TCCTATATTATGGGACGGAGGG 58.010 50.000 4.74 0.00 34.71 4.30
5418 6364 4.142227 CGTTCCTATATTATGGGACGGAGG 60.142 50.000 8.19 0.00 39.88 4.30
5419 6365 4.461781 ACGTTCCTATATTATGGGACGGAG 59.538 45.833 22.31 12.65 39.88 4.63
5420 6366 4.410099 ACGTTCCTATATTATGGGACGGA 58.590 43.478 22.31 5.79 39.88 4.69
5421 6367 4.796038 ACGTTCCTATATTATGGGACGG 57.204 45.455 22.31 14.71 39.88 4.79
5422 6368 7.225145 TCAAAAACGTTCCTATATTATGGGACG 59.775 37.037 19.49 19.49 39.88 4.79
5423 6369 8.340443 GTCAAAAACGTTCCTATATTATGGGAC 58.660 37.037 8.19 4.11 39.88 4.46
5424 6370 8.047911 TGTCAAAAACGTTCCTATATTATGGGA 58.952 33.333 0.00 4.74 38.24 4.37
5425 6371 8.126700 GTGTCAAAAACGTTCCTATATTATGGG 58.873 37.037 0.00 0.00 0.00 4.00
5426 6372 8.889717 AGTGTCAAAAACGTTCCTATATTATGG 58.110 33.333 0.00 0.00 0.00 2.74
5430 6376 8.395633 GCATAGTGTCAAAAACGTTCCTATATT 58.604 33.333 0.00 0.00 0.00 1.28
5431 6377 7.769044 AGCATAGTGTCAAAAACGTTCCTATAT 59.231 33.333 0.00 0.00 0.00 0.86
5432 6378 7.101054 AGCATAGTGTCAAAAACGTTCCTATA 58.899 34.615 0.00 0.00 0.00 1.31
5433 6379 5.938125 AGCATAGTGTCAAAAACGTTCCTAT 59.062 36.000 0.00 0.00 0.00 2.57
5434 6380 5.302360 AGCATAGTGTCAAAAACGTTCCTA 58.698 37.500 0.00 0.00 0.00 2.94
5435 6381 4.134563 AGCATAGTGTCAAAAACGTTCCT 58.865 39.130 0.00 0.00 0.00 3.36
5436 6382 4.483476 AGCATAGTGTCAAAAACGTTCC 57.517 40.909 0.00 0.00 0.00 3.62
5466 6412 8.432805 CCTCTGTCCCATAATATAAGAGTGTTT 58.567 37.037 0.00 0.00 0.00 2.83
5467 6413 7.016661 CCCTCTGTCCCATAATATAAGAGTGTT 59.983 40.741 0.00 0.00 0.00 3.32
5468 6414 6.498651 CCCTCTGTCCCATAATATAAGAGTGT 59.501 42.308 0.00 0.00 0.00 3.55
5469 6415 6.726299 TCCCTCTGTCCCATAATATAAGAGTG 59.274 42.308 0.00 0.00 0.00 3.51
5470 6416 6.875469 TCCCTCTGTCCCATAATATAAGAGT 58.125 40.000 0.00 0.00 0.00 3.24
5471 6417 6.957020 ACTCCCTCTGTCCCATAATATAAGAG 59.043 42.308 0.00 0.00 0.00 2.85
5472 6418 6.875469 ACTCCCTCTGTCCCATAATATAAGA 58.125 40.000 0.00 0.00 0.00 2.10
5473 6419 8.532819 GTTACTCCCTCTGTCCCATAATATAAG 58.467 40.741 0.00 0.00 0.00 1.73
5474 6420 8.014263 TGTTACTCCCTCTGTCCCATAATATAA 58.986 37.037 0.00 0.00 0.00 0.98
5475 6421 7.541074 TGTTACTCCCTCTGTCCCATAATATA 58.459 38.462 0.00 0.00 0.00 0.86
5476 6422 6.390504 TGTTACTCCCTCTGTCCCATAATAT 58.609 40.000 0.00 0.00 0.00 1.28
5477 6423 5.784023 TGTTACTCCCTCTGTCCCATAATA 58.216 41.667 0.00 0.00 0.00 0.98
5478 6424 4.631234 TGTTACTCCCTCTGTCCCATAAT 58.369 43.478 0.00 0.00 0.00 1.28
5479 6425 4.069312 TGTTACTCCCTCTGTCCCATAA 57.931 45.455 0.00 0.00 0.00 1.90
5480 6426 3.769189 TGTTACTCCCTCTGTCCCATA 57.231 47.619 0.00 0.00 0.00 2.74
5481 6427 2.642171 TGTTACTCCCTCTGTCCCAT 57.358 50.000 0.00 0.00 0.00 4.00
5482 6428 2.642171 ATGTTACTCCCTCTGTCCCA 57.358 50.000 0.00 0.00 0.00 4.37
5483 6429 5.431179 TTAAATGTTACTCCCTCTGTCCC 57.569 43.478 0.00 0.00 0.00 4.46
5484 6430 6.890293 AGATTAAATGTTACTCCCTCTGTCC 58.110 40.000 0.00 0.00 0.00 4.02
5485 6431 7.654116 GCTAGATTAAATGTTACTCCCTCTGTC 59.346 40.741 0.00 0.00 0.00 3.51
5486 6432 7.125811 TGCTAGATTAAATGTTACTCCCTCTGT 59.874 37.037 0.00 0.00 0.00 3.41
5487 6433 7.439655 GTGCTAGATTAAATGTTACTCCCTCTG 59.560 40.741 0.00 0.00 0.00 3.35
5488 6434 7.125811 TGTGCTAGATTAAATGTTACTCCCTCT 59.874 37.037 0.00 0.00 0.00 3.69
5489 6435 7.272978 TGTGCTAGATTAAATGTTACTCCCTC 58.727 38.462 0.00 0.00 0.00 4.30
5490 6436 7.195374 TGTGCTAGATTAAATGTTACTCCCT 57.805 36.000 0.00 0.00 0.00 4.20
5491 6437 7.934120 AGATGTGCTAGATTAAATGTTACTCCC 59.066 37.037 0.00 0.00 0.00 4.30
5492 6438 8.768955 CAGATGTGCTAGATTAAATGTTACTCC 58.231 37.037 0.00 0.00 0.00 3.85
5493 6439 9.319143 ACAGATGTGCTAGATTAAATGTTACTC 57.681 33.333 0.00 0.00 0.00 2.59
5510 6456 3.019964 TGGAACACCACAGATGTGC 57.980 52.632 7.46 0.00 44.34 4.57
5540 6486 9.382275 GGCATTCCTGAACAATTGTTAAATATT 57.618 29.630 23.33 0.00 38.56 1.28
5684 6630 4.945246 ACCAGTAATCGATAAACGCATCT 58.055 39.130 0.00 0.00 42.26 2.90
6012 6959 5.339177 CAACTTGAACAACACATAACAGCA 58.661 37.500 0.00 0.00 0.00 4.41
6116 7063 8.761689 TCATATAAGCTACTATCATCATTGGCA 58.238 33.333 0.00 0.00 0.00 4.92
6158 7105 4.344679 ACAAATGAAATCACTTTGCCAGGA 59.655 37.500 13.42 0.00 34.08 3.86
6252 7199 0.730265 TTGGCATACGCGGCTAAAAG 59.270 50.000 12.47 0.00 39.92 2.27
6321 7268 5.794894 ACAGAACTATGAAGGAAACGATGT 58.205 37.500 0.00 0.00 0.00 3.06
6728 7676 7.576236 ACTGAACACGAGAAAATAACAGATTG 58.424 34.615 0.00 0.00 0.00 2.67
7050 7998 5.667172 TGTTGATATCCTCTTCCTCATCCAA 59.333 40.000 0.00 0.00 0.00 3.53
7102 8050 5.457140 GCGACATCAAAGGAATTTGTACAA 58.543 37.500 3.59 3.59 33.82 2.41
7117 8065 0.389166 TACATGCACACGCGACATCA 60.389 50.000 15.93 5.66 42.97 3.07
7118 8066 0.930310 ATACATGCACACGCGACATC 59.070 50.000 15.93 0.00 42.97 3.06
7122 8070 2.542178 GGAAATATACATGCACACGCGA 59.458 45.455 15.93 0.00 42.97 5.87
7150 8098 9.321562 GTAATGGAAAACATATTCTACCGAGAA 57.678 33.333 0.00 0.00 41.68 2.87
7166 8114 7.067008 GGAGCTAAAGCATAGTGTAATGGAAAA 59.933 37.037 4.54 0.00 45.16 2.29
7196 8144 5.471456 GGAGCTCTTGAAAGAACAGAATTCA 59.529 40.000 14.64 0.00 34.03 2.57
7224 8172 2.166829 TGGCCATCACAACCACATAAC 58.833 47.619 0.00 0.00 0.00 1.89
7260 8208 6.931281 GCAGCATATAGTAGGATCAACTGAAA 59.069 38.462 9.57 0.00 0.00 2.69
7609 8559 4.549458 CTTCGGTCATGCTTGTGAATTTT 58.451 39.130 0.00 0.00 0.00 1.82
7696 8646 4.393062 CACAATTACCAGTACTCAAGGCTG 59.607 45.833 0.00 0.00 0.00 4.85
7754 8704 7.029563 GCAACCCTCAGATAATAAAACAGTTG 58.970 38.462 0.00 0.00 34.36 3.16
7801 8751 7.502561 GGGGACTAGACATTTAAGCATACATTT 59.497 37.037 0.00 0.00 0.00 2.32
7835 8785 3.450817 TCAATGCCTCGAGACCAAATAGA 59.549 43.478 15.71 5.28 0.00 1.98
7922 8872 9.533253 ACTTCATGTTGGAAATTTGTAGAAAAG 57.467 29.630 0.00 0.00 0.00 2.27
7999 8964 6.687604 AGGAACATATTTTACCACAAACTGC 58.312 36.000 0.00 0.00 0.00 4.40
8585 9552 2.100989 ACCGATCCCACTCAGTTAGAC 58.899 52.381 0.00 0.00 0.00 2.59
8840 9815 7.867403 ACGATTGAAGTGCAAAAATTAAGATGT 59.133 29.630 0.00 0.00 40.48 3.06
8850 9825 6.419413 GGTGAAATAACGATTGAAGTGCAAAA 59.581 34.615 0.00 0.00 40.48 2.44
8872 9847 5.187967 ACCTATTCTTGGAAGTAGTCTGGTG 59.812 44.000 0.00 0.00 0.00 4.17
8969 9944 7.552050 AATAGGTTGGGAATTGAAAACATGA 57.448 32.000 0.00 0.00 0.00 3.07
9102 10077 0.962356 CTGATCAACCCACACTGGCC 60.962 60.000 0.00 0.00 35.79 5.36
9186 10162 0.107017 AATTCTCTGCATGACGGGGG 60.107 55.000 0.00 0.00 0.00 5.40
9628 10626 7.415541 CCAAATTACCAGGTCACATACATCTTG 60.416 40.741 0.00 0.00 0.00 3.02
9631 10629 5.221048 GCCAAATTACCAGGTCACATACATC 60.221 44.000 0.00 0.00 0.00 3.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.