Multiple sequence alignment - TraesCS1B01G169700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G169700 chr1B 100.000 4909 0 0 1 4909 301248029 301252937 0.000000e+00 9066
1 TraesCS1B01G169700 chr1D 95.781 4124 157 7 786 4909 205474888 205478994 0.000000e+00 6636
2 TraesCS1B01G169700 chr1A 95.253 4129 173 10 786 4909 262008614 262012724 0.000000e+00 6517
3 TraesCS1B01G169700 chr1A 95.000 140 5 2 649 786 18784069 18784208 8.270000e-53 219
4 TraesCS1B01G169700 chr1A 95.000 140 5 2 649 786 18866012 18866151 8.270000e-53 219
5 TraesCS1B01G169700 chr3D 91.558 616 51 1 1 615 602646198 602645583 0.000000e+00 848
6 TraesCS1B01G169700 chr2D 90.000 490 45 4 129 616 73093235 73093722 8.970000e-177 630
7 TraesCS1B01G169700 chr4B 85.714 560 74 5 46 603 428481851 428482406 1.970000e-163 586
8 TraesCS1B01G169700 chrUn 91.909 309 24 1 301 608 295925129 295925437 9.760000e-117 431
9 TraesCS1B01G169700 chrUn 90.909 308 27 1 302 608 353536324 353536017 3.540000e-111 412
10 TraesCS1B01G169700 chrUn 90.909 308 27 1 302 608 385499960 385499653 3.540000e-111 412
11 TraesCS1B01G169700 chr4A 91.909 309 24 1 301 608 669028913 669029221 9.760000e-117 431
12 TraesCS1B01G169700 chr4A 90.909 308 27 1 302 608 712633709 712634016 3.540000e-111 412
13 TraesCS1B01G169700 chr4A 90.909 308 27 1 302 608 712814141 712814448 3.540000e-111 412
14 TraesCS1B01G169700 chr2A 98.529 136 2 0 651 786 755071986 755071851 1.770000e-59 241
15 TraesCS1B01G169700 chr2A 96.350 137 3 2 652 786 778611099 778611235 1.780000e-54 224
16 TraesCS1B01G169700 chr2A 95.000 140 7 0 647 786 471818879 471819018 2.300000e-53 220
17 TraesCS1B01G169700 chr6A 96.528 144 3 2 645 786 57147055 57147198 2.280000e-58 237
18 TraesCS1B01G169700 chr2B 97.059 136 3 1 652 786 225229222 225229357 1.370000e-55 228
19 TraesCS1B01G169700 chr5A 95.683 139 5 1 649 786 236009844 236009982 6.400000e-54 222
20 TraesCS1B01G169700 chr3A 96.324 136 4 1 652 786 196180461 196180596 6.400000e-54 222


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G169700 chr1B 301248029 301252937 4908 False 9066 9066 100.000 1 4909 1 chr1B.!!$F1 4908
1 TraesCS1B01G169700 chr1D 205474888 205478994 4106 False 6636 6636 95.781 786 4909 1 chr1D.!!$F1 4123
2 TraesCS1B01G169700 chr1A 262008614 262012724 4110 False 6517 6517 95.253 786 4909 1 chr1A.!!$F3 4123
3 TraesCS1B01G169700 chr3D 602645583 602646198 615 True 848 848 91.558 1 615 1 chr3D.!!$R1 614
4 TraesCS1B01G169700 chr4B 428481851 428482406 555 False 586 586 85.714 46 603 1 chr4B.!!$F1 557

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
315 316 0.036952 GCACTAGCAGCAGACCTCAA 60.037 55.0 0.00 0.0 41.58 3.02 F
655 656 0.105039 GGCCCTCATCTTAGTGGACG 59.895 60.0 0.00 0.0 0.00 4.79 F
670 671 0.109039 GGACGAGACTTGACTGCTCC 60.109 60.0 0.00 0.0 0.00 4.70 F
1623 1628 0.179100 AACTGATCCAGACATCGCCG 60.179 55.0 0.45 0.0 35.18 6.46 F
2516 2521 0.179045 TAGCCGAGGGGTACTACGAC 60.179 60.0 0.00 0.0 34.28 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1986 1991 1.303888 CCAGTGGGTTCTGCAGCAT 60.304 57.895 9.47 0.00 34.47 3.79 R
2387 2392 1.153549 GGGGAACAGCGAGCAGTAG 60.154 63.158 0.00 0.00 0.00 2.57 R
2487 2492 1.228306 CCTCGGCTACCTCCTCGAT 60.228 63.158 0.00 0.00 0.00 3.59 R
2690 2695 0.811281 CCATGTTTCTTCCCGGAAGC 59.189 55.000 20.86 8.97 39.29 3.86 R
4460 4538 0.312102 GAGCAGGAAACAGCACAACC 59.688 55.000 0.00 0.00 46.80 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.687941 TCCTCTTTGTCCAAAAGTTCATATC 57.312 36.000 0.00 0.00 0.00 1.63
41 42 7.939039 TCTTTGTCCAAAAGTTCATATCAGAGT 59.061 33.333 0.00 0.00 0.00 3.24
47 48 8.260818 TCCAAAAGTTCATATCAGAGTTAGAGG 58.739 37.037 0.00 0.00 0.00 3.69
49 50 9.442047 CAAAAGTTCATATCAGAGTTAGAGGTT 57.558 33.333 0.00 0.00 0.00 3.50
105 106 1.343069 GCTCCTCCTATACACCCTGG 58.657 60.000 0.00 0.00 0.00 4.45
112 113 2.971428 CTATACACCCTGGCCGTGCG 62.971 65.000 8.96 0.00 34.45 5.34
116 117 4.572571 ACCCTGGCCGTGCGAAAA 62.573 61.111 0.00 0.00 0.00 2.29
143 144 2.289010 CCCTTTGGCTTCGCAAAAATCT 60.289 45.455 0.00 0.00 30.56 2.40
168 169 4.980805 TGCGGGTGTGAGAACGGC 62.981 66.667 0.00 0.00 0.00 5.68
172 173 2.426023 GGTGTGAGAACGGCCAGT 59.574 61.111 2.24 0.00 0.00 4.00
190 191 1.890041 TCGGGGTTCTGTTGTTGCG 60.890 57.895 0.00 0.00 0.00 4.85
196 197 1.135228 GGTTCTGTTGTTGCGGTTTGT 60.135 47.619 0.00 0.00 0.00 2.83
211 212 1.607148 GTTTGTAGGGACACACAAGGC 59.393 52.381 0.00 0.00 36.45 4.35
233 234 1.689233 TACCTGGGAAGCTCGGCAT 60.689 57.895 0.00 0.00 0.00 4.40
298 299 0.609957 CATGCAGAGAAGGGTTGGCA 60.610 55.000 0.00 0.00 35.54 4.92
306 307 1.303643 AAGGGTTGGCACTAGCAGC 60.304 57.895 0.00 0.00 44.61 5.25
307 308 2.034066 GGGTTGGCACTAGCAGCA 59.966 61.111 9.64 0.00 44.61 4.41
308 309 2.042831 GGGTTGGCACTAGCAGCAG 61.043 63.158 9.64 0.00 44.61 4.24
309 310 1.003355 GGTTGGCACTAGCAGCAGA 60.003 57.895 9.64 0.00 44.61 4.26
310 311 1.301677 GGTTGGCACTAGCAGCAGAC 61.302 60.000 9.64 7.02 44.61 3.51
311 312 1.003355 TTGGCACTAGCAGCAGACC 60.003 57.895 9.64 0.00 44.61 3.85
312 313 1.483595 TTGGCACTAGCAGCAGACCT 61.484 55.000 9.64 0.00 44.61 3.85
313 314 1.153469 GGCACTAGCAGCAGACCTC 60.153 63.158 9.64 0.00 44.61 3.85
314 315 1.593787 GCACTAGCAGCAGACCTCA 59.406 57.895 0.00 0.00 41.58 3.86
315 316 0.036952 GCACTAGCAGCAGACCTCAA 60.037 55.000 0.00 0.00 41.58 3.02
316 317 1.719600 CACTAGCAGCAGACCTCAAC 58.280 55.000 0.00 0.00 0.00 3.18
317 318 1.274728 CACTAGCAGCAGACCTCAACT 59.725 52.381 0.00 0.00 0.00 3.16
318 319 1.974236 ACTAGCAGCAGACCTCAACTT 59.026 47.619 0.00 0.00 0.00 2.66
319 320 2.289320 ACTAGCAGCAGACCTCAACTTG 60.289 50.000 0.00 0.00 0.00 3.16
320 321 0.888285 AGCAGCAGACCTCAACTTGC 60.888 55.000 0.00 0.00 0.00 4.01
321 322 1.168407 GCAGCAGACCTCAACTTGCA 61.168 55.000 0.00 0.00 0.00 4.08
322 323 0.873054 CAGCAGACCTCAACTTGCAG 59.127 55.000 0.00 0.00 0.00 4.41
323 324 0.761187 AGCAGACCTCAACTTGCAGA 59.239 50.000 0.00 0.00 0.00 4.26
324 325 1.141657 AGCAGACCTCAACTTGCAGAA 59.858 47.619 0.00 0.00 0.00 3.02
325 326 1.265365 GCAGACCTCAACTTGCAGAAC 59.735 52.381 0.00 0.00 0.00 3.01
326 327 2.843701 CAGACCTCAACTTGCAGAACT 58.156 47.619 0.00 0.00 0.00 3.01
327 328 3.209410 CAGACCTCAACTTGCAGAACTT 58.791 45.455 0.00 0.00 0.00 2.66
328 329 3.629398 CAGACCTCAACTTGCAGAACTTT 59.371 43.478 0.00 0.00 0.00 2.66
329 330 3.629398 AGACCTCAACTTGCAGAACTTTG 59.371 43.478 0.00 0.00 0.00 2.77
330 331 3.356290 ACCTCAACTTGCAGAACTTTGT 58.644 40.909 0.00 0.00 0.00 2.83
331 332 3.378427 ACCTCAACTTGCAGAACTTTGTC 59.622 43.478 0.00 0.00 0.00 3.18
332 333 3.378112 CCTCAACTTGCAGAACTTTGTCA 59.622 43.478 0.00 0.00 0.00 3.58
333 334 4.037208 CCTCAACTTGCAGAACTTTGTCAT 59.963 41.667 0.00 0.00 0.00 3.06
334 335 5.450965 CCTCAACTTGCAGAACTTTGTCATT 60.451 40.000 0.00 0.00 0.00 2.57
335 336 5.342433 TCAACTTGCAGAACTTTGTCATTG 58.658 37.500 0.00 0.00 0.00 2.82
336 337 3.709987 ACTTGCAGAACTTTGTCATTGC 58.290 40.909 0.00 0.00 0.00 3.56
337 338 3.382546 ACTTGCAGAACTTTGTCATTGCT 59.617 39.130 0.00 0.00 33.00 3.91
338 339 4.142093 ACTTGCAGAACTTTGTCATTGCTT 60.142 37.500 0.00 0.00 33.00 3.91
339 340 3.968649 TGCAGAACTTTGTCATTGCTTC 58.031 40.909 0.00 0.00 33.00 3.86
340 341 3.380954 TGCAGAACTTTGTCATTGCTTCA 59.619 39.130 0.00 0.00 33.00 3.02
341 342 4.038282 TGCAGAACTTTGTCATTGCTTCAT 59.962 37.500 0.00 0.00 33.00 2.57
342 343 5.241285 TGCAGAACTTTGTCATTGCTTCATA 59.759 36.000 0.00 0.00 33.00 2.15
343 344 5.570589 GCAGAACTTTGTCATTGCTTCATAC 59.429 40.000 0.00 0.00 0.00 2.39
344 345 6.569226 GCAGAACTTTGTCATTGCTTCATACT 60.569 38.462 0.00 0.00 0.00 2.12
345 346 7.020010 CAGAACTTTGTCATTGCTTCATACTC 58.980 38.462 0.00 0.00 0.00 2.59
346 347 5.886960 ACTTTGTCATTGCTTCATACTCC 57.113 39.130 0.00 0.00 0.00 3.85
347 348 5.316167 ACTTTGTCATTGCTTCATACTCCA 58.684 37.500 0.00 0.00 0.00 3.86
348 349 5.769662 ACTTTGTCATTGCTTCATACTCCAA 59.230 36.000 0.00 0.00 0.00 3.53
349 350 5.885230 TTGTCATTGCTTCATACTCCAAG 57.115 39.130 0.00 0.00 0.00 3.61
350 351 3.691118 TGTCATTGCTTCATACTCCAAGC 59.309 43.478 0.00 0.00 44.55 4.01
356 357 4.088823 GCTTCATACTCCAAGCAAACAG 57.911 45.455 0.00 0.00 43.87 3.16
357 358 3.503748 GCTTCATACTCCAAGCAAACAGT 59.496 43.478 0.00 0.00 43.87 3.55
358 359 4.022849 GCTTCATACTCCAAGCAAACAGTT 60.023 41.667 0.00 0.00 43.87 3.16
359 360 5.437289 TTCATACTCCAAGCAAACAGTTG 57.563 39.130 0.00 0.00 37.83 3.16
373 374 6.448053 CAAACAGTTGCTGAATCAATCAAG 57.552 37.500 2.91 0.00 37.67 3.02
374 375 4.778534 ACAGTTGCTGAATCAATCAAGG 57.221 40.909 2.91 0.00 37.67 3.61
375 376 3.057033 ACAGTTGCTGAATCAATCAAGGC 60.057 43.478 2.91 0.00 37.67 4.35
376 377 3.057104 CAGTTGCTGAATCAATCAAGGCA 60.057 43.478 0.00 0.00 37.42 4.75
377 378 3.057033 AGTTGCTGAATCAATCAAGGCAC 60.057 43.478 0.00 0.00 38.51 5.01
378 379 2.516906 TGCTGAATCAATCAAGGCACA 58.483 42.857 0.00 0.00 35.12 4.57
379 380 2.892215 TGCTGAATCAATCAAGGCACAA 59.108 40.909 0.00 0.00 35.12 3.33
380 381 3.057104 TGCTGAATCAATCAAGGCACAAG 60.057 43.478 0.00 0.00 35.12 3.16
381 382 3.192001 GCTGAATCAATCAAGGCACAAGA 59.808 43.478 0.00 0.00 37.67 3.02
382 383 4.674623 GCTGAATCAATCAAGGCACAAGAG 60.675 45.833 0.00 0.00 37.67 2.85
383 384 3.760151 TGAATCAATCAAGGCACAAGAGG 59.240 43.478 0.00 0.00 34.30 3.69
384 385 2.205022 TCAATCAAGGCACAAGAGGG 57.795 50.000 0.00 0.00 0.00 4.30
385 386 1.704628 TCAATCAAGGCACAAGAGGGA 59.295 47.619 0.00 0.00 0.00 4.20
386 387 2.089980 CAATCAAGGCACAAGAGGGAG 58.910 52.381 0.00 0.00 0.00 4.30
387 388 0.622665 ATCAAGGCACAAGAGGGAGG 59.377 55.000 0.00 0.00 0.00 4.30
388 389 0.473694 TCAAGGCACAAGAGGGAGGA 60.474 55.000 0.00 0.00 0.00 3.71
389 390 0.401738 CAAGGCACAAGAGGGAGGAA 59.598 55.000 0.00 0.00 0.00 3.36
390 391 1.005215 CAAGGCACAAGAGGGAGGAAT 59.995 52.381 0.00 0.00 0.00 3.01
391 392 0.622665 AGGCACAAGAGGGAGGAATG 59.377 55.000 0.00 0.00 0.00 2.67
392 393 0.394899 GGCACAAGAGGGAGGAATGG 60.395 60.000 0.00 0.00 0.00 3.16
393 394 0.620556 GCACAAGAGGGAGGAATGGA 59.379 55.000 0.00 0.00 0.00 3.41
394 395 1.213926 GCACAAGAGGGAGGAATGGAT 59.786 52.381 0.00 0.00 0.00 3.41
395 396 2.747799 GCACAAGAGGGAGGAATGGATC 60.748 54.545 0.00 0.00 0.00 3.36
396 397 2.776536 CACAAGAGGGAGGAATGGATCT 59.223 50.000 0.00 0.00 0.00 2.75
397 398 3.969976 CACAAGAGGGAGGAATGGATCTA 59.030 47.826 0.00 0.00 0.00 1.98
398 399 4.596643 CACAAGAGGGAGGAATGGATCTAT 59.403 45.833 0.00 0.00 0.00 1.98
399 400 5.782331 CACAAGAGGGAGGAATGGATCTATA 59.218 44.000 0.00 0.00 0.00 1.31
400 401 6.022315 ACAAGAGGGAGGAATGGATCTATAG 58.978 44.000 0.00 0.00 0.00 1.31
401 402 5.894715 AGAGGGAGGAATGGATCTATAGT 57.105 43.478 0.00 0.00 0.00 2.12
402 403 6.239856 AGAGGGAGGAATGGATCTATAGTT 57.760 41.667 0.00 0.00 0.00 2.24
403 404 6.260663 AGAGGGAGGAATGGATCTATAGTTC 58.739 44.000 0.00 0.75 0.00 3.01
404 405 5.982391 AGGGAGGAATGGATCTATAGTTCA 58.018 41.667 11.92 4.54 0.00 3.18
405 406 6.579214 AGGGAGGAATGGATCTATAGTTCAT 58.421 40.000 11.92 6.35 0.00 2.57
406 407 6.443206 AGGGAGGAATGGATCTATAGTTCATG 59.557 42.308 11.92 0.00 0.00 3.07
407 408 6.441924 GGGAGGAATGGATCTATAGTTCATGA 59.558 42.308 11.92 0.00 0.00 3.07
408 409 7.038017 GGGAGGAATGGATCTATAGTTCATGAA 60.038 40.741 3.38 3.38 0.00 2.57
409 410 8.378565 GGAGGAATGGATCTATAGTTCATGAAA 58.621 37.037 10.35 0.00 0.00 2.69
410 411 9.956640 GAGGAATGGATCTATAGTTCATGAAAT 57.043 33.333 13.58 13.58 0.00 2.17
411 412 9.956640 AGGAATGGATCTATAGTTCATGAAATC 57.043 33.333 12.35 9.11 0.00 2.17
412 413 9.956640 GGAATGGATCTATAGTTCATGAAATCT 57.043 33.333 12.35 7.71 0.00 2.40
415 416 8.613060 TGGATCTATAGTTCATGAAATCTTGC 57.387 34.615 12.35 0.00 0.00 4.01
416 417 8.435187 TGGATCTATAGTTCATGAAATCTTGCT 58.565 33.333 12.35 5.49 0.00 3.91
417 418 9.282569 GGATCTATAGTTCATGAAATCTTGCTT 57.717 33.333 12.35 0.00 0.00 3.91
423 424 7.275888 AGTTCATGAAATCTTGCTTACAACA 57.724 32.000 10.35 0.00 0.00 3.33
424 425 7.889469 AGTTCATGAAATCTTGCTTACAACAT 58.111 30.769 10.35 0.00 0.00 2.71
425 426 8.025445 AGTTCATGAAATCTTGCTTACAACATC 58.975 33.333 10.35 0.00 0.00 3.06
426 427 7.692460 TCATGAAATCTTGCTTACAACATCT 57.308 32.000 0.00 0.00 0.00 2.90
427 428 8.114331 TCATGAAATCTTGCTTACAACATCTT 57.886 30.769 0.00 0.00 0.00 2.40
428 429 8.579006 TCATGAAATCTTGCTTACAACATCTTT 58.421 29.630 0.00 0.00 0.00 2.52
429 430 9.844790 CATGAAATCTTGCTTACAACATCTTTA 57.155 29.630 0.00 0.00 0.00 1.85
468 469 6.699575 ACTTTTGAAAGTAGTGCAGTCAAT 57.300 33.333 7.32 0.00 46.75 2.57
469 470 6.498304 ACTTTTGAAAGTAGTGCAGTCAATG 58.502 36.000 7.32 0.00 46.75 2.82
470 471 6.095440 ACTTTTGAAAGTAGTGCAGTCAATGT 59.905 34.615 7.32 0.00 46.75 2.71
471 472 6.449635 TTTGAAAGTAGTGCAGTCAATGTT 57.550 33.333 0.00 0.00 0.00 2.71
472 473 5.422666 TGAAAGTAGTGCAGTCAATGTTG 57.577 39.130 0.00 0.00 0.00 3.33
473 474 5.122519 TGAAAGTAGTGCAGTCAATGTTGA 58.877 37.500 0.00 0.00 34.20 3.18
474 475 5.764686 TGAAAGTAGTGCAGTCAATGTTGAT 59.235 36.000 0.00 0.00 39.73 2.57
475 476 5.618056 AAGTAGTGCAGTCAATGTTGATG 57.382 39.130 0.00 0.94 39.73 3.07
476 477 3.438087 AGTAGTGCAGTCAATGTTGATGC 59.562 43.478 16.32 16.32 39.73 3.91
477 478 2.232399 AGTGCAGTCAATGTTGATGCA 58.768 42.857 19.39 19.39 43.05 3.96
478 479 2.710220 TGCAGTCAATGTTGATGCAC 57.290 45.000 19.39 2.87 41.81 4.57
479 480 1.955080 TGCAGTCAATGTTGATGCACA 59.045 42.857 19.39 7.32 41.81 4.57
480 481 2.559231 TGCAGTCAATGTTGATGCACAT 59.441 40.909 19.39 0.00 41.81 3.21
481 482 3.757493 TGCAGTCAATGTTGATGCACATA 59.243 39.130 19.39 6.41 41.81 2.29
482 483 4.142556 TGCAGTCAATGTTGATGCACATAG 60.143 41.667 19.39 1.74 41.81 2.23
483 484 4.732647 GCAGTCAATGTTGATGCACATAGG 60.733 45.833 17.39 0.00 39.39 2.57
484 485 4.397103 CAGTCAATGTTGATGCACATAGGT 59.603 41.667 0.00 0.00 39.73 3.08
485 486 5.012239 AGTCAATGTTGATGCACATAGGTT 58.988 37.500 0.00 0.00 39.73 3.50
486 487 6.093909 CAGTCAATGTTGATGCACATAGGTTA 59.906 38.462 0.00 0.00 39.73 2.85
487 488 6.317140 AGTCAATGTTGATGCACATAGGTTAG 59.683 38.462 0.00 0.00 39.73 2.34
488 489 5.066375 TCAATGTTGATGCACATAGGTTAGC 59.934 40.000 0.00 0.00 36.30 3.09
489 490 3.278574 TGTTGATGCACATAGGTTAGCC 58.721 45.455 0.00 0.00 0.00 3.93
490 491 3.278574 GTTGATGCACATAGGTTAGCCA 58.721 45.455 0.00 0.00 37.19 4.75
491 492 3.643199 TGATGCACATAGGTTAGCCAA 57.357 42.857 0.00 0.00 37.19 4.52
492 493 3.544684 TGATGCACATAGGTTAGCCAAG 58.455 45.455 0.00 0.00 37.19 3.61
493 494 3.054434 TGATGCACATAGGTTAGCCAAGT 60.054 43.478 0.00 0.00 37.19 3.16
494 495 4.163268 TGATGCACATAGGTTAGCCAAGTA 59.837 41.667 0.00 0.00 37.19 2.24
495 496 4.771114 TGCACATAGGTTAGCCAAGTAT 57.229 40.909 0.00 0.00 37.19 2.12
496 497 5.110814 TGCACATAGGTTAGCCAAGTATT 57.889 39.130 0.00 0.00 37.19 1.89
497 498 5.123227 TGCACATAGGTTAGCCAAGTATTC 58.877 41.667 0.00 0.00 37.19 1.75
498 499 5.123227 GCACATAGGTTAGCCAAGTATTCA 58.877 41.667 0.00 0.00 37.19 2.57
499 500 5.007724 GCACATAGGTTAGCCAAGTATTCAC 59.992 44.000 0.00 0.00 37.19 3.18
500 501 6.349300 CACATAGGTTAGCCAAGTATTCACT 58.651 40.000 0.00 0.00 37.19 3.41
501 502 6.823689 CACATAGGTTAGCCAAGTATTCACTT 59.176 38.462 0.00 0.00 46.15 3.16
502 503 7.985184 CACATAGGTTAGCCAAGTATTCACTTA 59.015 37.037 0.00 0.00 43.30 2.24
503 504 7.985752 ACATAGGTTAGCCAAGTATTCACTTAC 59.014 37.037 0.00 0.00 43.30 2.34
504 505 6.622427 AGGTTAGCCAAGTATTCACTTACT 57.378 37.500 0.00 0.00 43.30 2.24
505 506 6.641474 AGGTTAGCCAAGTATTCACTTACTC 58.359 40.000 0.00 0.00 43.30 2.59
506 507 6.440965 AGGTTAGCCAAGTATTCACTTACTCT 59.559 38.462 0.00 0.00 43.30 3.24
507 508 6.757478 GGTTAGCCAAGTATTCACTTACTCTC 59.243 42.308 0.00 0.00 43.30 3.20
508 509 7.321153 GTTAGCCAAGTATTCACTTACTCTCA 58.679 38.462 0.00 0.00 43.30 3.27
509 510 5.971763 AGCCAAGTATTCACTTACTCTCAG 58.028 41.667 0.00 0.00 43.30 3.35
510 511 5.482175 AGCCAAGTATTCACTTACTCTCAGT 59.518 40.000 0.00 0.00 43.30 3.41
511 512 5.808030 GCCAAGTATTCACTTACTCTCAGTC 59.192 44.000 0.00 0.00 43.30 3.51
512 513 6.572509 GCCAAGTATTCACTTACTCTCAGTCA 60.573 42.308 0.00 0.00 43.30 3.41
513 514 7.032580 CCAAGTATTCACTTACTCTCAGTCAG 58.967 42.308 0.00 0.00 43.30 3.51
514 515 6.767524 AGTATTCACTTACTCTCAGTCAGG 57.232 41.667 0.00 0.00 0.00 3.86
515 516 5.654650 AGTATTCACTTACTCTCAGTCAGGG 59.345 44.000 0.00 0.00 0.00 4.45
516 517 3.527507 TCACTTACTCTCAGTCAGGGT 57.472 47.619 0.00 0.00 40.04 4.34
517 518 3.422796 TCACTTACTCTCAGTCAGGGTC 58.577 50.000 0.00 0.00 36.98 4.46
518 519 2.162608 CACTTACTCTCAGTCAGGGTCG 59.837 54.545 0.00 0.00 36.98 4.79
519 520 2.040012 ACTTACTCTCAGTCAGGGTCGA 59.960 50.000 0.00 0.00 36.98 4.20
520 521 2.110901 TACTCTCAGTCAGGGTCGAC 57.889 55.000 7.13 7.13 36.98 4.20
521 522 0.110678 ACTCTCAGTCAGGGTCGACA 59.889 55.000 18.91 0.00 38.43 4.35
522 523 0.523966 CTCTCAGTCAGGGTCGACAC 59.476 60.000 18.91 15.14 38.43 3.67
523 524 0.179001 TCTCAGTCAGGGTCGACACA 60.179 55.000 22.01 0.00 38.43 3.72
524 525 0.891373 CTCAGTCAGGGTCGACACAT 59.109 55.000 22.01 2.71 38.43 3.21
525 526 1.273606 CTCAGTCAGGGTCGACACATT 59.726 52.381 22.01 0.00 38.43 2.71
526 527 1.691976 TCAGTCAGGGTCGACACATTT 59.308 47.619 22.01 0.00 38.43 2.32
527 528 1.800586 CAGTCAGGGTCGACACATTTG 59.199 52.381 22.01 10.04 38.43 2.32
528 529 1.156736 GTCAGGGTCGACACATTTGG 58.843 55.000 22.01 3.86 35.88 3.28
529 530 0.762418 TCAGGGTCGACACATTTGGT 59.238 50.000 22.01 0.00 0.00 3.67
530 531 1.142060 TCAGGGTCGACACATTTGGTT 59.858 47.619 22.01 0.00 0.00 3.67
531 532 1.266718 CAGGGTCGACACATTTGGTTG 59.733 52.381 22.01 3.30 0.00 3.77
532 533 0.596082 GGGTCGACACATTTGGTTGG 59.404 55.000 18.91 0.00 0.00 3.77
533 534 0.596082 GGTCGACACATTTGGTTGGG 59.404 55.000 18.91 0.00 0.00 4.12
534 535 1.314730 GTCGACACATTTGGTTGGGT 58.685 50.000 11.55 0.00 35.46 4.51
535 536 1.265905 GTCGACACATTTGGTTGGGTC 59.734 52.381 11.55 0.00 44.85 4.46
538 539 3.092334 GACACATTTGGTTGGGTCAAC 57.908 47.619 2.10 2.46 46.99 3.18
551 552 2.721425 GGTCAACCCCATAATCCGAA 57.279 50.000 0.00 0.00 0.00 4.30
552 553 3.223674 GGTCAACCCCATAATCCGAAT 57.776 47.619 0.00 0.00 0.00 3.34
553 554 3.562182 GGTCAACCCCATAATCCGAATT 58.438 45.455 0.00 0.00 0.00 2.17
554 555 3.317993 GGTCAACCCCATAATCCGAATTG 59.682 47.826 0.00 0.00 0.00 2.32
555 556 3.951680 GTCAACCCCATAATCCGAATTGT 59.048 43.478 0.00 0.00 0.00 2.71
556 557 5.127491 GTCAACCCCATAATCCGAATTGTA 58.873 41.667 0.00 0.00 0.00 2.41
557 558 5.768164 GTCAACCCCATAATCCGAATTGTAT 59.232 40.000 0.00 0.00 0.00 2.29
558 559 6.001460 TCAACCCCATAATCCGAATTGTATC 58.999 40.000 0.00 0.00 0.00 2.24
559 560 4.918588 ACCCCATAATCCGAATTGTATCC 58.081 43.478 0.00 0.00 0.00 2.59
560 561 4.263771 ACCCCATAATCCGAATTGTATCCC 60.264 45.833 0.00 0.00 0.00 3.85
561 562 4.263727 CCCCATAATCCGAATTGTATCCCA 60.264 45.833 0.00 0.00 0.00 4.37
562 563 4.700213 CCCATAATCCGAATTGTATCCCAC 59.300 45.833 0.00 0.00 0.00 4.61
563 564 4.391830 CCATAATCCGAATTGTATCCCACG 59.608 45.833 0.00 0.00 0.00 4.94
564 565 3.553828 AATCCGAATTGTATCCCACGT 57.446 42.857 0.00 0.00 0.00 4.49
565 566 3.553828 ATCCGAATTGTATCCCACGTT 57.446 42.857 0.00 0.00 0.00 3.99
566 567 3.337694 TCCGAATTGTATCCCACGTTT 57.662 42.857 0.00 0.00 0.00 3.60
567 568 3.677190 TCCGAATTGTATCCCACGTTTT 58.323 40.909 0.00 0.00 0.00 2.43
568 569 3.437395 TCCGAATTGTATCCCACGTTTTG 59.563 43.478 0.00 0.00 0.00 2.44
569 570 3.189702 CCGAATTGTATCCCACGTTTTGT 59.810 43.478 0.00 0.00 0.00 2.83
580 581 3.839823 CACGTTTTGTGGCTTTTGATG 57.160 42.857 0.00 0.00 45.21 3.07
581 582 3.443037 CACGTTTTGTGGCTTTTGATGA 58.557 40.909 0.00 0.00 45.21 2.92
582 583 3.862267 CACGTTTTGTGGCTTTTGATGAA 59.138 39.130 0.00 0.00 45.21 2.57
583 584 4.507388 CACGTTTTGTGGCTTTTGATGAAT 59.493 37.500 0.00 0.00 45.21 2.57
584 585 5.689514 CACGTTTTGTGGCTTTTGATGAATA 59.310 36.000 0.00 0.00 45.21 1.75
585 586 6.199908 CACGTTTTGTGGCTTTTGATGAATAA 59.800 34.615 0.00 0.00 45.21 1.40
586 587 6.758886 ACGTTTTGTGGCTTTTGATGAATAAA 59.241 30.769 0.00 0.00 0.00 1.40
587 588 7.062848 CGTTTTGTGGCTTTTGATGAATAAAC 58.937 34.615 0.00 0.00 0.00 2.01
588 589 7.042791 CGTTTTGTGGCTTTTGATGAATAAACT 60.043 33.333 0.00 0.00 0.00 2.66
589 590 8.611757 GTTTTGTGGCTTTTGATGAATAAACTT 58.388 29.630 0.00 0.00 0.00 2.66
590 591 7.712264 TTGTGGCTTTTGATGAATAAACTTG 57.288 32.000 0.00 0.00 0.00 3.16
591 592 6.222389 TGTGGCTTTTGATGAATAAACTTGG 58.778 36.000 0.00 0.00 0.00 3.61
592 593 5.120674 GTGGCTTTTGATGAATAAACTTGGC 59.879 40.000 0.00 0.00 0.00 4.52
593 594 5.011943 TGGCTTTTGATGAATAAACTTGGCT 59.988 36.000 0.00 0.00 0.00 4.75
594 595 6.210385 TGGCTTTTGATGAATAAACTTGGCTA 59.790 34.615 0.00 0.00 0.00 3.93
595 596 7.093377 TGGCTTTTGATGAATAAACTTGGCTAT 60.093 33.333 0.00 0.00 0.00 2.97
596 597 7.765819 GGCTTTTGATGAATAAACTTGGCTATT 59.234 33.333 0.00 0.00 0.00 1.73
597 598 9.154847 GCTTTTGATGAATAAACTTGGCTATTT 57.845 29.630 0.00 0.00 0.00 1.40
599 600 9.651913 TTTTGATGAATAAACTTGGCTATTTCC 57.348 29.630 0.00 0.00 0.00 3.13
600 601 7.346751 TGATGAATAAACTTGGCTATTTCCC 57.653 36.000 0.00 0.00 0.00 3.97
601 602 7.125391 TGATGAATAAACTTGGCTATTTCCCT 58.875 34.615 0.00 0.00 0.00 4.20
602 603 7.285401 TGATGAATAAACTTGGCTATTTCCCTC 59.715 37.037 0.00 0.00 0.00 4.30
603 604 6.489603 TGAATAAACTTGGCTATTTCCCTCA 58.510 36.000 0.00 0.00 0.00 3.86
604 605 6.951198 TGAATAAACTTGGCTATTTCCCTCAA 59.049 34.615 0.00 0.00 0.00 3.02
605 606 7.453126 TGAATAAACTTGGCTATTTCCCTCAAA 59.547 33.333 0.00 0.00 0.00 2.69
606 607 7.790782 ATAAACTTGGCTATTTCCCTCAAAA 57.209 32.000 0.00 0.00 0.00 2.44
607 608 6.493189 AAACTTGGCTATTTCCCTCAAAAA 57.507 33.333 0.00 0.00 0.00 1.94
608 609 5.728637 ACTTGGCTATTTCCCTCAAAAAG 57.271 39.130 0.00 0.00 0.00 2.27
609 610 5.393866 ACTTGGCTATTTCCCTCAAAAAGA 58.606 37.500 0.00 0.00 0.00 2.52
610 611 5.838521 ACTTGGCTATTTCCCTCAAAAAGAA 59.161 36.000 0.00 0.00 0.00 2.52
611 612 6.326323 ACTTGGCTATTTCCCTCAAAAAGAAA 59.674 34.615 0.00 0.00 34.26 2.52
612 613 6.739331 TGGCTATTTCCCTCAAAAAGAAAA 57.261 33.333 0.00 0.00 33.53 2.29
613 614 6.758254 TGGCTATTTCCCTCAAAAAGAAAAG 58.242 36.000 0.00 0.00 33.53 2.27
614 615 6.326323 TGGCTATTTCCCTCAAAAAGAAAAGT 59.674 34.615 0.00 0.00 33.53 2.66
615 616 7.147567 TGGCTATTTCCCTCAAAAAGAAAAGTT 60.148 33.333 0.00 0.00 33.53 2.66
616 617 7.171508 GGCTATTTCCCTCAAAAAGAAAAGTTG 59.828 37.037 0.00 0.00 33.53 3.16
617 618 7.926018 GCTATTTCCCTCAAAAAGAAAAGTTGA 59.074 33.333 0.00 0.00 33.53 3.18
618 619 9.249457 CTATTTCCCTCAAAAAGAAAAGTTGAC 57.751 33.333 0.00 0.00 33.53 3.18
619 620 6.597832 TTCCCTCAAAAAGAAAAGTTGACA 57.402 33.333 0.00 0.00 0.00 3.58
620 621 6.790232 TCCCTCAAAAAGAAAAGTTGACAT 57.210 33.333 0.00 0.00 0.00 3.06
621 622 6.805713 TCCCTCAAAAAGAAAAGTTGACATC 58.194 36.000 0.00 0.00 0.00 3.06
622 623 5.985530 CCCTCAAAAAGAAAAGTTGACATCC 59.014 40.000 0.00 0.00 0.00 3.51
623 624 6.406849 CCCTCAAAAAGAAAAGTTGACATCCA 60.407 38.462 0.00 0.00 0.00 3.41
624 625 6.476706 CCTCAAAAAGAAAAGTTGACATCCAC 59.523 38.462 0.00 0.00 0.00 4.02
625 626 6.337356 TCAAAAAGAAAAGTTGACATCCACC 58.663 36.000 0.00 0.00 0.00 4.61
626 627 5.930837 AAAAGAAAAGTTGACATCCACCA 57.069 34.783 0.00 0.00 0.00 4.17
627 628 5.520376 AAAGAAAAGTTGACATCCACCAG 57.480 39.130 0.00 0.00 0.00 4.00
628 629 3.490348 AGAAAAGTTGACATCCACCAGG 58.510 45.455 0.00 0.00 0.00 4.45
629 630 2.292828 AAAGTTGACATCCACCAGGG 57.707 50.000 0.00 0.00 34.83 4.45
630 631 0.251341 AAGTTGACATCCACCAGGGC 60.251 55.000 0.00 0.00 36.21 5.19
631 632 1.074775 GTTGACATCCACCAGGGCA 59.925 57.895 0.00 0.00 36.21 5.36
632 633 0.962356 GTTGACATCCACCAGGGCAG 60.962 60.000 0.00 0.00 36.21 4.85
633 634 2.141011 TTGACATCCACCAGGGCAGG 62.141 60.000 0.00 0.00 36.21 4.85
634 635 2.204136 ACATCCACCAGGGCAGGA 60.204 61.111 1.94 2.97 36.21 3.86
635 636 1.852157 ACATCCACCAGGGCAGGAA 60.852 57.895 1.94 0.00 34.62 3.36
636 637 1.077212 CATCCACCAGGGCAGGAAG 60.077 63.158 1.94 0.00 34.62 3.46
637 638 2.311854 ATCCACCAGGGCAGGAAGG 61.312 63.158 1.94 4.11 34.62 3.46
638 639 4.748144 CCACCAGGGCAGGAAGGC 62.748 72.222 1.94 0.00 43.27 4.35
646 647 3.329093 GCAGGAAGGCCCTCATCT 58.671 61.111 3.19 0.00 45.60 2.90
647 648 1.611965 GCAGGAAGGCCCTCATCTT 59.388 57.895 3.19 0.00 45.60 2.40
648 649 0.839946 GCAGGAAGGCCCTCATCTTA 59.160 55.000 3.19 0.00 45.60 2.10
649 650 1.202746 GCAGGAAGGCCCTCATCTTAG 60.203 57.143 3.19 0.00 45.60 2.18
650 651 2.122768 CAGGAAGGCCCTCATCTTAGT 58.877 52.381 3.19 0.00 45.60 2.24
651 652 2.122768 AGGAAGGCCCTCATCTTAGTG 58.877 52.381 3.19 0.00 43.31 2.74
652 653 1.141858 GGAAGGCCCTCATCTTAGTGG 59.858 57.143 3.19 0.00 0.00 4.00
653 654 2.119495 GAAGGCCCTCATCTTAGTGGA 58.881 52.381 0.00 0.00 0.00 4.02
654 655 1.501582 AGGCCCTCATCTTAGTGGAC 58.498 55.000 0.00 0.00 0.00 4.02
655 656 0.105039 GGCCCTCATCTTAGTGGACG 59.895 60.000 0.00 0.00 0.00 4.79
656 657 1.112113 GCCCTCATCTTAGTGGACGA 58.888 55.000 0.00 0.00 0.00 4.20
657 658 1.067821 GCCCTCATCTTAGTGGACGAG 59.932 57.143 0.00 0.00 0.00 4.18
658 659 2.656002 CCCTCATCTTAGTGGACGAGA 58.344 52.381 0.00 0.00 0.00 4.04
659 660 2.359531 CCCTCATCTTAGTGGACGAGAC 59.640 54.545 0.00 0.00 0.00 3.36
660 661 3.283751 CCTCATCTTAGTGGACGAGACT 58.716 50.000 0.00 0.00 0.00 3.24
661 662 3.697045 CCTCATCTTAGTGGACGAGACTT 59.303 47.826 0.00 0.00 0.00 3.01
662 663 4.439426 CCTCATCTTAGTGGACGAGACTTG 60.439 50.000 0.00 0.00 0.00 3.16
663 664 4.332828 TCATCTTAGTGGACGAGACTTGA 58.667 43.478 0.00 0.00 0.00 3.02
664 665 4.156190 TCATCTTAGTGGACGAGACTTGAC 59.844 45.833 0.00 0.00 0.00 3.18
665 666 3.752665 TCTTAGTGGACGAGACTTGACT 58.247 45.455 0.00 0.00 0.00 3.41
666 667 3.502595 TCTTAGTGGACGAGACTTGACTG 59.497 47.826 0.00 0.00 0.00 3.51
667 668 0.315568 AGTGGACGAGACTTGACTGC 59.684 55.000 0.00 0.00 0.00 4.40
668 669 0.315568 GTGGACGAGACTTGACTGCT 59.684 55.000 0.00 0.00 0.00 4.24
669 670 0.598562 TGGACGAGACTTGACTGCTC 59.401 55.000 0.00 0.00 0.00 4.26
670 671 0.109039 GGACGAGACTTGACTGCTCC 60.109 60.000 0.00 0.00 0.00 4.70
671 672 0.109039 GACGAGACTTGACTGCTCCC 60.109 60.000 0.00 0.00 0.00 4.30
672 673 1.216710 CGAGACTTGACTGCTCCCC 59.783 63.158 0.00 0.00 0.00 4.81
673 674 1.254284 CGAGACTTGACTGCTCCCCT 61.254 60.000 0.00 0.00 0.00 4.79
674 675 0.534873 GAGACTTGACTGCTCCCCTC 59.465 60.000 0.00 0.00 0.00 4.30
675 676 0.907230 AGACTTGACTGCTCCCCTCC 60.907 60.000 0.00 0.00 0.00 4.30
676 677 1.904990 GACTTGACTGCTCCCCTCCC 61.905 65.000 0.00 0.00 0.00 4.30
677 678 3.003173 TTGACTGCTCCCCTCCCG 61.003 66.667 0.00 0.00 0.00 5.14
678 679 3.846405 TTGACTGCTCCCCTCCCGT 62.846 63.158 0.00 0.00 0.00 5.28
679 680 3.775654 GACTGCTCCCCTCCCGTG 61.776 72.222 0.00 0.00 0.00 4.94
680 681 4.640690 ACTGCTCCCCTCCCGTGT 62.641 66.667 0.00 0.00 0.00 4.49
681 682 4.087892 CTGCTCCCCTCCCGTGTG 62.088 72.222 0.00 0.00 0.00 3.82
687 688 4.489771 CCCTCCCGTGTGCCCATC 62.490 72.222 0.00 0.00 0.00 3.51
688 689 4.489771 CCTCCCGTGTGCCCATCC 62.490 72.222 0.00 0.00 0.00 3.51
689 690 4.838152 CTCCCGTGTGCCCATCCG 62.838 72.222 0.00 0.00 0.00 4.18
694 695 3.127533 GTGTGCCCATCCGTGCTC 61.128 66.667 0.00 0.00 0.00 4.26
695 696 4.408821 TGTGCCCATCCGTGCTCC 62.409 66.667 0.00 0.00 0.00 4.70
707 708 4.830765 TGCTCCCGCATACGTGGC 62.831 66.667 0.00 0.21 42.25 5.01
708 709 4.530857 GCTCCCGCATACGTGGCT 62.531 66.667 11.48 0.00 41.87 4.75
709 710 2.186903 CTCCCGCATACGTGGCTT 59.813 61.111 11.48 0.00 41.87 4.35
710 711 2.125310 TCCCGCATACGTGGCTTG 60.125 61.111 11.48 3.68 41.87 4.01
711 712 2.125310 CCCGCATACGTGGCTTGA 60.125 61.111 11.48 0.00 41.87 3.02
712 713 1.523711 CCCGCATACGTGGCTTGAT 60.524 57.895 11.48 0.00 41.87 2.57
713 714 1.095228 CCCGCATACGTGGCTTGATT 61.095 55.000 11.48 0.00 41.87 2.57
714 715 0.732571 CCGCATACGTGGCTTGATTT 59.267 50.000 11.48 0.00 35.59 2.17
715 716 1.531677 CCGCATACGTGGCTTGATTTG 60.532 52.381 11.48 0.00 35.59 2.32
716 717 1.396648 CGCATACGTGGCTTGATTTGA 59.603 47.619 11.48 0.00 33.53 2.69
717 718 2.032054 CGCATACGTGGCTTGATTTGAT 59.968 45.455 11.48 0.00 33.53 2.57
718 719 3.487376 CGCATACGTGGCTTGATTTGATT 60.487 43.478 11.48 0.00 33.53 2.57
719 720 3.792956 GCATACGTGGCTTGATTTGATTG 59.207 43.478 0.00 0.00 0.00 2.67
720 721 4.353737 CATACGTGGCTTGATTTGATTGG 58.646 43.478 0.00 0.00 0.00 3.16
721 722 2.513753 ACGTGGCTTGATTTGATTGGA 58.486 42.857 0.00 0.00 0.00 3.53
722 723 2.890311 ACGTGGCTTGATTTGATTGGAA 59.110 40.909 0.00 0.00 0.00 3.53
723 724 3.244976 CGTGGCTTGATTTGATTGGAAC 58.755 45.455 0.00 0.00 0.00 3.62
724 725 3.305267 CGTGGCTTGATTTGATTGGAACA 60.305 43.478 0.00 0.00 0.00 3.18
737 738 1.551452 TGGAACAAAATAAGGCCCGG 58.449 50.000 0.00 0.00 31.92 5.73
738 739 1.203075 TGGAACAAAATAAGGCCCGGT 60.203 47.619 0.00 0.00 31.92 5.28
739 740 1.475280 GGAACAAAATAAGGCCCGGTC 59.525 52.381 0.00 0.00 0.00 4.79
740 741 1.475280 GAACAAAATAAGGCCCGGTCC 59.525 52.381 0.00 0.00 0.00 4.46
741 742 0.323999 ACAAAATAAGGCCCGGTCCC 60.324 55.000 0.00 0.00 0.00 4.46
742 743 0.323908 CAAAATAAGGCCCGGTCCCA 60.324 55.000 0.00 0.00 0.00 4.37
743 744 0.323999 AAAATAAGGCCCGGTCCCAC 60.324 55.000 0.00 0.00 0.00 4.61
744 745 2.219449 AAATAAGGCCCGGTCCCACC 62.219 60.000 0.00 0.00 34.05 4.61
750 751 2.611486 CCCGGTCCCACCCCTTAA 60.611 66.667 0.00 0.00 33.75 1.85
751 752 2.232836 CCCGGTCCCACCCCTTAAA 61.233 63.158 0.00 0.00 33.75 1.52
752 753 1.769006 CCGGTCCCACCCCTTAAAA 59.231 57.895 0.00 0.00 33.75 1.52
753 754 0.333652 CCGGTCCCACCCCTTAAAAT 59.666 55.000 0.00 0.00 33.75 1.82
754 755 1.683938 CCGGTCCCACCCCTTAAAATC 60.684 57.143 0.00 0.00 33.75 2.17
755 756 1.004979 CGGTCCCACCCCTTAAAATCA 59.995 52.381 0.00 0.00 33.75 2.57
756 757 2.735151 GGTCCCACCCCTTAAAATCAG 58.265 52.381 0.00 0.00 30.04 2.90
757 758 2.623239 GGTCCCACCCCTTAAAATCAGG 60.623 54.545 0.00 0.00 30.04 3.86
781 782 7.560796 GGGGGAGATGATTAGATTAGAAAGA 57.439 40.000 0.00 0.00 0.00 2.52
782 783 7.978925 GGGGGAGATGATTAGATTAGAAAGAA 58.021 38.462 0.00 0.00 0.00 2.52
783 784 8.440771 GGGGGAGATGATTAGATTAGAAAGAAA 58.559 37.037 0.00 0.00 0.00 2.52
784 785 9.853177 GGGGAGATGATTAGATTAGAAAGAAAA 57.147 33.333 0.00 0.00 0.00 2.29
822 823 3.808466 AGTGTATGCTCATCATGACGT 57.192 42.857 0.00 0.00 36.63 4.34
832 833 1.048724 ATCATGACGTGATCCCCGGT 61.049 55.000 4.22 0.00 44.23 5.28
956 958 2.853963 ACACAAACGAACGAAACAACC 58.146 42.857 0.14 0.00 0.00 3.77
1319 1324 4.521075 GCAGCAGGCGAGATTACA 57.479 55.556 0.00 0.00 0.00 2.41
1356 1361 4.881273 ACAAACTAAGATCACACTGTTGCA 59.119 37.500 0.00 0.00 0.00 4.08
1357 1362 5.532406 ACAAACTAAGATCACACTGTTGCAT 59.468 36.000 0.00 0.00 0.00 3.96
1358 1363 6.039717 ACAAACTAAGATCACACTGTTGCATT 59.960 34.615 0.00 0.00 0.00 3.56
1359 1364 5.618056 ACTAAGATCACACTGTTGCATTG 57.382 39.130 0.00 0.00 0.00 2.82
1360 1365 3.293311 AAGATCACACTGTTGCATTGC 57.707 42.857 0.46 0.46 0.00 3.56
1380 1385 2.350007 GCATTGCATTGCAGGTTTTGTG 60.350 45.455 24.71 5.10 40.61 3.33
1501 1506 2.664851 CCTCAAGCGCGTCAACCA 60.665 61.111 8.43 0.00 0.00 3.67
1505 1510 1.205064 CAAGCGCGTCAACCAGAAG 59.795 57.895 8.43 0.00 0.00 2.85
1621 1626 1.293924 CCAACTGATCCAGACATCGC 58.706 55.000 0.45 0.00 35.18 4.58
1622 1627 1.293924 CAACTGATCCAGACATCGCC 58.706 55.000 0.45 0.00 35.18 5.54
1623 1628 0.179100 AACTGATCCAGACATCGCCG 60.179 55.000 0.45 0.00 35.18 6.46
1661 1666 4.719369 GACGCCCGACTGCTCGTT 62.719 66.667 0.00 0.00 38.32 3.85
1748 1753 2.359230 GGCAAGACCAAGCTCGCT 60.359 61.111 0.00 0.00 38.86 4.93
1865 1870 2.750888 GGTCATCGACGCCTTTGGC 61.751 63.158 0.00 0.00 46.75 4.52
2005 2010 1.782201 ATGCTGCAGAACCCACTGGA 61.782 55.000 20.43 0.00 38.22 3.86
2006 2011 4.709840 CTGCAGAACCCACTGGAG 57.290 61.111 8.42 0.00 46.22 3.86
2010 2015 4.379243 AGAACCCACTGGAGCGCG 62.379 66.667 0.00 0.00 34.81 6.86
2126 2131 1.446792 CGACGATGTCTGGCTGCTT 60.447 57.895 0.00 0.00 0.00 3.91
2201 2206 0.674534 AAAGGCTCGTCGAGAAGTGT 59.325 50.000 26.11 3.41 0.00 3.55
2315 2320 3.650950 TGGCTGGTGAAGGGGCTC 61.651 66.667 0.00 0.00 0.00 4.70
2332 2337 4.873129 CCCGGACGACGCCATGAG 62.873 72.222 0.73 0.00 42.52 2.90
2423 2428 3.702048 CCGGGCTTCCCTGTCGAA 61.702 66.667 0.00 0.00 42.67 3.71
2436 2441 4.388499 TCGAAAGGCGGGTGCTCC 62.388 66.667 0.00 0.00 42.25 4.70
2470 2475 3.485431 CGAGCGCTTGGTGCAGAG 61.485 66.667 17.45 0.00 42.00 3.35
2471 2476 2.358003 GAGCGCTTGGTGCAGAGT 60.358 61.111 13.26 0.00 42.00 3.24
2516 2521 0.179045 TAGCCGAGGGGTACTACGAC 60.179 60.000 0.00 0.00 34.28 4.34
2555 2560 2.487428 CTCCAGACGACGCAGGAG 59.513 66.667 14.03 14.03 41.43 3.69
2712 2717 0.322456 TCCGGGAAGAAACATGGCTG 60.322 55.000 0.00 0.00 0.00 4.85
2715 2720 1.508088 GGAAGAAACATGGCTGCGG 59.492 57.895 0.00 0.00 0.00 5.69
2724 2729 1.990060 ATGGCTGCGGTACCAGAGT 60.990 57.895 13.54 0.00 39.88 3.24
2726 2731 2.125512 GCTGCGGTACCAGAGTGG 60.126 66.667 13.54 0.00 45.02 4.00
2745 2750 1.346068 GGATCCTGAATTCGGAGAGGG 59.654 57.143 16.17 3.85 38.43 4.30
2813 2818 2.806856 CTTCGCGAGGCTGCATCAC 61.807 63.158 15.07 3.49 34.15 3.06
3039 3044 1.575788 TGAGGGGGCTCAGAGATCTTA 59.424 52.381 0.00 0.00 0.00 2.10
3046 3051 3.452627 GGGCTCAGAGATCTTAACCTTGA 59.547 47.826 0.00 0.00 0.00 3.02
3060 3065 1.548719 ACCTTGATGGAACGACGATCA 59.451 47.619 0.00 0.00 40.84 2.92
3101 3106 1.078567 CCAGCTGAGAAGCCTCACC 60.079 63.158 17.39 0.00 44.01 4.02
3104 3109 1.220477 GCTGAGAAGCCTCACCTCC 59.780 63.158 0.00 0.00 44.01 4.30
3109 3114 2.685380 AAGCCTCACCTCCCTCCG 60.685 66.667 0.00 0.00 0.00 4.63
3556 3561 4.462508 TTGTCGATTCTTCAGCTCTCAT 57.537 40.909 0.00 0.00 0.00 2.90
3753 3795 4.007644 CTGGCGGCCTCAGACACA 62.008 66.667 21.46 0.00 34.36 3.72
3817 3859 1.001641 AGGCTGTGGAGGACATTGC 60.002 57.895 0.00 0.00 32.74 3.56
3864 3942 1.066573 ACGCACCTGATCTGAAGAAGG 60.067 52.381 0.38 0.00 35.82 3.46
3873 3951 3.068732 TGATCTGAAGAAGGTATCAGGCG 59.931 47.826 3.23 0.00 42.62 5.52
3908 3986 2.972713 GGACCTTAGCATATCCCACTGA 59.027 50.000 0.00 0.00 0.00 3.41
3971 4049 4.731483 GCAGTGCGCTTATTTGATCATCAA 60.731 41.667 9.73 0.00 37.77 2.57
3983 4061 9.577222 TTATTTGATCATCAATTGCAGGAGATA 57.423 29.630 0.00 0.00 36.11 1.98
4222 4300 3.692257 AACTGCTGCTTCTGATAGTGT 57.308 42.857 0.00 0.00 0.00 3.55
4254 4332 1.701704 GGCAGAAAACAGAAATGCCG 58.298 50.000 0.00 0.00 46.19 5.69
4270 4348 1.728490 GCCGATCAAGATGTTGGGGC 61.728 60.000 14.18 14.18 37.58 5.80
4460 4538 1.865970 GCTGAGGAAGATGCAGATTCG 59.134 52.381 7.39 0.00 0.00 3.34
4483 4561 1.202794 TGTGCTGTTTCCTGCTCATCA 60.203 47.619 0.00 0.00 35.15 3.07
4609 4687 0.464554 GGTCCTGATGCAACTAGGCC 60.465 60.000 0.00 0.00 0.00 5.19
4722 4800 0.320771 CTTGGTCCGTGAAGGGTCTG 60.321 60.000 0.00 0.00 41.52 3.51
4745 4823 6.228258 TGGAGTAATCAACAGTACTGAAACC 58.772 40.000 29.30 16.39 33.50 3.27
4868 4946 0.238289 CTGCAAGTAAGGTGCCAACG 59.762 55.000 0.00 0.00 41.49 4.10
4898 4976 5.351740 GGTTGGCAGTGACTCTAAAGTATTC 59.648 44.000 0.00 0.00 35.28 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 7.342026 ACTTTTGGACAAAGAGGATTGTAACTT 59.658 33.333 1.36 0.00 43.31 2.66
12 13 7.230747 TGATATGAACTTTTGGACAAAGAGGA 58.769 34.615 1.36 0.00 0.00 3.71
36 37 7.492994 GCTTGTCCTTAATAACCTCTAACTCTG 59.507 40.741 0.00 0.00 0.00 3.35
41 42 6.882678 GGTTGCTTGTCCTTAATAACCTCTAA 59.117 38.462 0.00 0.00 34.69 2.10
47 48 5.959618 ACTGGTTGCTTGTCCTTAATAAC 57.040 39.130 0.00 0.00 0.00 1.89
49 50 5.007682 GGAACTGGTTGCTTGTCCTTAATA 58.992 41.667 0.00 0.00 0.00 0.98
88 89 0.105142 GGCCAGGGTGTATAGGAGGA 60.105 60.000 0.00 0.00 0.00 3.71
95 96 4.467084 CGCACGGCCAGGGTGTAT 62.467 66.667 2.24 0.00 37.70 2.29
105 106 2.677979 GGAGGAGTTTTCGCACGGC 61.678 63.158 0.00 0.00 0.00 5.68
112 113 2.294449 AGCCAAAGGGAGGAGTTTTC 57.706 50.000 0.00 0.00 35.59 2.29
116 117 1.679898 CGAAGCCAAAGGGAGGAGT 59.320 57.895 0.00 0.00 35.59 3.85
143 144 1.552792 TCTCACACCCGCATCAACATA 59.447 47.619 0.00 0.00 0.00 2.29
168 169 0.179029 AACAACAGAACCCCGACTGG 60.179 55.000 0.00 0.00 38.30 4.00
172 173 1.890041 CGCAACAACAGAACCCCGA 60.890 57.895 0.00 0.00 0.00 5.14
190 191 2.227194 CCTTGTGTGTCCCTACAAACC 58.773 52.381 0.00 0.00 42.37 3.27
196 197 1.136828 AGTTGCCTTGTGTGTCCCTA 58.863 50.000 0.00 0.00 0.00 3.53
211 212 0.108138 CCGAGCTTCCCAGGTAGTTG 60.108 60.000 0.00 0.00 0.00 3.16
233 234 3.072330 TCATCAAGACCTGCAACCACTAA 59.928 43.478 0.00 0.00 0.00 2.24
298 299 1.638529 AGTTGAGGTCTGCTGCTAGT 58.361 50.000 0.00 0.00 0.00 2.57
306 307 2.843701 AGTTCTGCAAGTTGAGGTCTG 58.156 47.619 7.16 0.00 33.76 3.51
307 308 3.567478 AAGTTCTGCAAGTTGAGGTCT 57.433 42.857 7.16 1.86 33.76 3.85
308 309 3.378427 ACAAAGTTCTGCAAGTTGAGGTC 59.622 43.478 7.16 0.00 33.76 3.85
309 310 3.356290 ACAAAGTTCTGCAAGTTGAGGT 58.644 40.909 7.16 0.00 33.76 3.85
310 311 3.378112 TGACAAAGTTCTGCAAGTTGAGG 59.622 43.478 7.16 0.00 33.76 3.86
311 312 4.621068 TGACAAAGTTCTGCAAGTTGAG 57.379 40.909 7.16 1.61 33.76 3.02
312 313 5.342433 CAATGACAAAGTTCTGCAAGTTGA 58.658 37.500 7.16 0.00 33.76 3.18
313 314 4.026310 GCAATGACAAAGTTCTGCAAGTTG 60.026 41.667 0.00 0.00 33.76 3.16
314 315 4.114794 GCAATGACAAAGTTCTGCAAGTT 58.885 39.130 0.00 0.00 33.76 2.66
315 316 3.382546 AGCAATGACAAAGTTCTGCAAGT 59.617 39.130 0.00 0.00 33.76 3.16
316 317 3.973657 AGCAATGACAAAGTTCTGCAAG 58.026 40.909 0.00 0.00 32.21 4.01
317 318 4.142204 TGAAGCAATGACAAAGTTCTGCAA 60.142 37.500 0.00 0.00 32.21 4.08
318 319 3.380954 TGAAGCAATGACAAAGTTCTGCA 59.619 39.130 0.00 0.00 32.21 4.41
319 320 3.968649 TGAAGCAATGACAAAGTTCTGC 58.031 40.909 0.00 0.00 0.00 4.26
320 321 6.906659 AGTATGAAGCAATGACAAAGTTCTG 58.093 36.000 0.00 0.00 0.00 3.02
321 322 6.150140 GGAGTATGAAGCAATGACAAAGTTCT 59.850 38.462 0.00 0.00 0.00 3.01
322 323 6.072508 TGGAGTATGAAGCAATGACAAAGTTC 60.073 38.462 0.00 0.00 0.00 3.01
323 324 5.769662 TGGAGTATGAAGCAATGACAAAGTT 59.230 36.000 0.00 0.00 0.00 2.66
324 325 5.316167 TGGAGTATGAAGCAATGACAAAGT 58.684 37.500 0.00 0.00 0.00 2.66
325 326 5.885230 TGGAGTATGAAGCAATGACAAAG 57.115 39.130 0.00 0.00 0.00 2.77
326 327 5.335897 GCTTGGAGTATGAAGCAATGACAAA 60.336 40.000 0.00 0.00 43.44 2.83
327 328 4.156556 GCTTGGAGTATGAAGCAATGACAA 59.843 41.667 0.00 0.00 43.44 3.18
328 329 3.691118 GCTTGGAGTATGAAGCAATGACA 59.309 43.478 0.00 0.00 43.44 3.58
329 330 4.284378 GCTTGGAGTATGAAGCAATGAC 57.716 45.455 0.00 0.00 43.44 3.06
335 336 3.503748 ACTGTTTGCTTGGAGTATGAAGC 59.496 43.478 0.00 0.00 44.10 3.86
336 337 5.455392 CAACTGTTTGCTTGGAGTATGAAG 58.545 41.667 0.00 0.00 0.00 3.02
337 338 5.437289 CAACTGTTTGCTTGGAGTATGAA 57.563 39.130 0.00 0.00 0.00 2.57
350 351 5.404366 CCTTGATTGATTCAGCAACTGTTTG 59.596 40.000 0.00 0.00 35.27 2.93
351 352 5.535333 CCTTGATTGATTCAGCAACTGTTT 58.465 37.500 0.00 0.00 35.27 2.83
352 353 4.560108 GCCTTGATTGATTCAGCAACTGTT 60.560 41.667 0.00 0.00 35.27 3.16
353 354 3.057033 GCCTTGATTGATTCAGCAACTGT 60.057 43.478 0.00 0.00 35.27 3.55
354 355 3.057104 TGCCTTGATTGATTCAGCAACTG 60.057 43.478 0.00 0.00 33.86 3.16
355 356 3.057033 GTGCCTTGATTGATTCAGCAACT 60.057 43.478 0.00 0.00 37.30 3.16
356 357 3.248266 GTGCCTTGATTGATTCAGCAAC 58.752 45.455 0.00 0.00 37.30 4.17
357 358 2.892215 TGTGCCTTGATTGATTCAGCAA 59.108 40.909 0.00 1.85 37.30 3.91
358 359 2.516906 TGTGCCTTGATTGATTCAGCA 58.483 42.857 0.00 0.00 34.25 4.41
359 360 3.192001 TCTTGTGCCTTGATTGATTCAGC 59.808 43.478 0.00 0.00 35.27 4.26
360 361 4.142447 CCTCTTGTGCCTTGATTGATTCAG 60.142 45.833 0.00 0.00 35.27 3.02
361 362 3.760151 CCTCTTGTGCCTTGATTGATTCA 59.240 43.478 0.00 0.00 0.00 2.57
362 363 3.129988 CCCTCTTGTGCCTTGATTGATTC 59.870 47.826 0.00 0.00 0.00 2.52
363 364 3.094572 CCCTCTTGTGCCTTGATTGATT 58.905 45.455 0.00 0.00 0.00 2.57
364 365 2.309755 TCCCTCTTGTGCCTTGATTGAT 59.690 45.455 0.00 0.00 0.00 2.57
365 366 1.704628 TCCCTCTTGTGCCTTGATTGA 59.295 47.619 0.00 0.00 0.00 2.57
366 367 2.089980 CTCCCTCTTGTGCCTTGATTG 58.910 52.381 0.00 0.00 0.00 2.67
367 368 1.005215 CCTCCCTCTTGTGCCTTGATT 59.995 52.381 0.00 0.00 0.00 2.57
368 369 0.622665 CCTCCCTCTTGTGCCTTGAT 59.377 55.000 0.00 0.00 0.00 2.57
369 370 0.473694 TCCTCCCTCTTGTGCCTTGA 60.474 55.000 0.00 0.00 0.00 3.02
370 371 0.401738 TTCCTCCCTCTTGTGCCTTG 59.598 55.000 0.00 0.00 0.00 3.61
371 372 1.005215 CATTCCTCCCTCTTGTGCCTT 59.995 52.381 0.00 0.00 0.00 4.35
372 373 0.622665 CATTCCTCCCTCTTGTGCCT 59.377 55.000 0.00 0.00 0.00 4.75
373 374 0.394899 CCATTCCTCCCTCTTGTGCC 60.395 60.000 0.00 0.00 0.00 5.01
374 375 0.620556 TCCATTCCTCCCTCTTGTGC 59.379 55.000 0.00 0.00 0.00 4.57
375 376 2.776536 AGATCCATTCCTCCCTCTTGTG 59.223 50.000 0.00 0.00 0.00 3.33
376 377 3.142579 AGATCCATTCCTCCCTCTTGT 57.857 47.619 0.00 0.00 0.00 3.16
377 378 6.022315 ACTATAGATCCATTCCTCCCTCTTG 58.978 44.000 6.78 0.00 0.00 3.02
378 379 6.239856 ACTATAGATCCATTCCTCCCTCTT 57.760 41.667 6.78 0.00 0.00 2.85
379 380 5.894715 ACTATAGATCCATTCCTCCCTCT 57.105 43.478 6.78 0.00 0.00 3.69
380 381 6.019748 TGAACTATAGATCCATTCCTCCCTC 58.980 44.000 6.78 0.00 0.00 4.30
381 382 5.982391 TGAACTATAGATCCATTCCTCCCT 58.018 41.667 6.78 0.00 0.00 4.20
382 383 6.441924 TCATGAACTATAGATCCATTCCTCCC 59.558 42.308 6.78 0.00 0.00 4.30
383 384 7.487822 TCATGAACTATAGATCCATTCCTCC 57.512 40.000 6.78 0.00 0.00 4.30
384 385 9.956640 ATTTCATGAACTATAGATCCATTCCTC 57.043 33.333 7.89 0.00 0.00 3.71
385 386 9.956640 GATTTCATGAACTATAGATCCATTCCT 57.043 33.333 7.89 0.00 0.00 3.36
386 387 9.956640 AGATTTCATGAACTATAGATCCATTCC 57.043 33.333 7.89 0.00 0.00 3.01
389 390 9.228949 GCAAGATTTCATGAACTATAGATCCAT 57.771 33.333 7.89 3.87 0.00 3.41
390 391 8.435187 AGCAAGATTTCATGAACTATAGATCCA 58.565 33.333 7.89 1.56 0.00 3.41
391 392 8.845413 AGCAAGATTTCATGAACTATAGATCC 57.155 34.615 7.89 0.00 0.00 3.36
397 398 9.013229 TGTTGTAAGCAAGATTTCATGAACTAT 57.987 29.630 7.89 0.00 34.94 2.12
398 399 8.389779 TGTTGTAAGCAAGATTTCATGAACTA 57.610 30.769 7.89 0.00 34.94 2.24
399 400 7.275888 TGTTGTAAGCAAGATTTCATGAACT 57.724 32.000 7.89 2.08 34.94 3.01
400 401 8.025445 AGATGTTGTAAGCAAGATTTCATGAAC 58.975 33.333 7.89 0.00 38.49 3.18
401 402 8.114331 AGATGTTGTAAGCAAGATTTCATGAA 57.886 30.769 3.38 3.38 38.49 2.57
402 403 7.692460 AGATGTTGTAAGCAAGATTTCATGA 57.308 32.000 0.00 0.00 38.49 3.07
403 404 8.752766 AAAGATGTTGTAAGCAAGATTTCATG 57.247 30.769 0.00 0.00 38.49 3.07
444 445 7.282224 ACATTGACTGCACTACTTTCAAAAGTA 59.718 33.333 13.23 13.23 46.75 2.24
446 447 6.498304 ACATTGACTGCACTACTTTCAAAAG 58.502 36.000 0.97 0.97 41.73 2.27
447 448 6.449635 ACATTGACTGCACTACTTTCAAAA 57.550 33.333 0.00 0.00 30.34 2.44
448 449 6.094742 TCAACATTGACTGCACTACTTTCAAA 59.905 34.615 0.00 0.00 30.34 2.69
449 450 5.588246 TCAACATTGACTGCACTACTTTCAA 59.412 36.000 0.00 0.00 31.01 2.69
450 451 5.122519 TCAACATTGACTGCACTACTTTCA 58.877 37.500 0.00 0.00 31.01 2.69
451 452 5.673337 TCAACATTGACTGCACTACTTTC 57.327 39.130 0.00 0.00 31.01 2.62
452 453 5.563475 GCATCAACATTGACTGCACTACTTT 60.563 40.000 17.02 0.00 40.49 2.66
453 454 4.083110 GCATCAACATTGACTGCACTACTT 60.083 41.667 17.02 0.00 40.49 2.24
454 455 3.438087 GCATCAACATTGACTGCACTACT 59.562 43.478 17.02 0.00 40.49 2.57
455 456 3.189080 TGCATCAACATTGACTGCACTAC 59.811 43.478 19.08 2.29 41.81 2.73
456 457 3.410508 TGCATCAACATTGACTGCACTA 58.589 40.909 19.08 5.94 41.81 2.74
457 458 2.232399 TGCATCAACATTGACTGCACT 58.768 42.857 19.08 0.00 41.81 4.40
458 459 2.710220 TGCATCAACATTGACTGCAC 57.290 45.000 19.08 2.68 41.81 4.57
459 460 1.955080 TGTGCATCAACATTGACTGCA 59.045 42.857 19.08 19.08 43.05 4.41
460 461 2.710220 TGTGCATCAACATTGACTGC 57.290 45.000 15.92 15.92 40.49 4.40
461 462 4.397103 ACCTATGTGCATCAACATTGACTG 59.603 41.667 0.00 0.00 41.09 3.51
462 463 4.592942 ACCTATGTGCATCAACATTGACT 58.407 39.130 0.00 0.00 41.09 3.41
463 464 4.970662 ACCTATGTGCATCAACATTGAC 57.029 40.909 0.00 0.00 41.09 3.18
464 465 5.066375 GCTAACCTATGTGCATCAACATTGA 59.934 40.000 0.00 0.00 41.09 2.57
465 466 5.276270 GCTAACCTATGTGCATCAACATTG 58.724 41.667 0.00 0.00 41.09 2.82
466 467 4.339247 GGCTAACCTATGTGCATCAACATT 59.661 41.667 0.00 0.00 41.09 2.71
467 468 3.885297 GGCTAACCTATGTGCATCAACAT 59.115 43.478 0.00 0.00 43.21 2.71
468 469 3.278574 GGCTAACCTATGTGCATCAACA 58.721 45.455 0.00 0.00 0.00 3.33
469 470 3.278574 TGGCTAACCTATGTGCATCAAC 58.721 45.455 0.00 0.00 36.63 3.18
470 471 3.643199 TGGCTAACCTATGTGCATCAA 57.357 42.857 0.00 0.00 36.63 2.57
471 472 3.054434 ACTTGGCTAACCTATGTGCATCA 60.054 43.478 0.00 0.00 36.63 3.07
472 473 3.545703 ACTTGGCTAACCTATGTGCATC 58.454 45.455 0.00 0.00 36.63 3.91
473 474 3.652057 ACTTGGCTAACCTATGTGCAT 57.348 42.857 0.00 0.00 36.63 3.96
474 475 4.771114 ATACTTGGCTAACCTATGTGCA 57.229 40.909 0.00 0.00 36.63 4.57
475 476 5.007724 GTGAATACTTGGCTAACCTATGTGC 59.992 44.000 0.00 0.00 36.63 4.57
476 477 6.349300 AGTGAATACTTGGCTAACCTATGTG 58.651 40.000 0.00 0.00 36.63 3.21
477 478 6.561519 AGTGAATACTTGGCTAACCTATGT 57.438 37.500 0.00 0.00 36.63 2.29
478 479 8.204836 AGTAAGTGAATACTTGGCTAACCTATG 58.795 37.037 3.11 0.00 46.28 2.23
479 480 8.320338 AGTAAGTGAATACTTGGCTAACCTAT 57.680 34.615 3.11 0.00 46.28 2.57
480 481 7.618512 AGAGTAAGTGAATACTTGGCTAACCTA 59.381 37.037 3.11 0.00 46.28 3.08
481 482 6.440965 AGAGTAAGTGAATACTTGGCTAACCT 59.559 38.462 3.11 0.00 46.28 3.50
482 483 6.641474 AGAGTAAGTGAATACTTGGCTAACC 58.359 40.000 3.11 0.00 46.28 2.85
483 484 7.321153 TGAGAGTAAGTGAATACTTGGCTAAC 58.679 38.462 3.11 0.00 46.28 2.34
484 485 7.178628 ACTGAGAGTAAGTGAATACTTGGCTAA 59.821 37.037 3.11 0.00 46.28 3.09
485 486 6.663953 ACTGAGAGTAAGTGAATACTTGGCTA 59.336 38.462 3.11 0.00 46.28 3.93
486 487 5.482175 ACTGAGAGTAAGTGAATACTTGGCT 59.518 40.000 3.11 1.87 46.28 4.75
487 488 5.725362 ACTGAGAGTAAGTGAATACTTGGC 58.275 41.667 3.11 0.00 46.28 4.52
488 489 6.925211 TGACTGAGAGTAAGTGAATACTTGG 58.075 40.000 3.11 0.00 46.28 3.61
489 490 7.032580 CCTGACTGAGAGTAAGTGAATACTTG 58.967 42.308 3.11 0.00 46.28 3.16
491 492 5.654650 CCCTGACTGAGAGTAAGTGAATACT 59.345 44.000 0.00 0.00 38.81 2.12
492 493 5.419471 ACCCTGACTGAGAGTAAGTGAATAC 59.581 44.000 0.00 0.00 0.00 1.89
493 494 5.580998 ACCCTGACTGAGAGTAAGTGAATA 58.419 41.667 0.00 0.00 0.00 1.75
494 495 4.421131 ACCCTGACTGAGAGTAAGTGAAT 58.579 43.478 0.00 0.00 0.00 2.57
495 496 3.827302 GACCCTGACTGAGAGTAAGTGAA 59.173 47.826 0.00 0.00 0.00 3.18
496 497 3.422796 GACCCTGACTGAGAGTAAGTGA 58.577 50.000 0.00 0.00 0.00 3.41
497 498 2.162608 CGACCCTGACTGAGAGTAAGTG 59.837 54.545 0.00 0.00 0.00 3.16
498 499 2.040012 TCGACCCTGACTGAGAGTAAGT 59.960 50.000 0.00 0.00 0.00 2.24
499 500 2.420722 GTCGACCCTGACTGAGAGTAAG 59.579 54.545 3.51 0.00 35.95 2.34
500 501 2.224695 TGTCGACCCTGACTGAGAGTAA 60.225 50.000 14.12 0.00 39.64 2.24
501 502 1.350019 TGTCGACCCTGACTGAGAGTA 59.650 52.381 14.12 0.00 39.64 2.59
502 503 0.110678 TGTCGACCCTGACTGAGAGT 59.889 55.000 14.12 0.00 39.64 3.24
503 504 0.523966 GTGTCGACCCTGACTGAGAG 59.476 60.000 14.12 0.00 39.64 3.20
504 505 0.179001 TGTGTCGACCCTGACTGAGA 60.179 55.000 14.12 0.00 39.64 3.27
505 506 0.891373 ATGTGTCGACCCTGACTGAG 59.109 55.000 14.12 0.00 39.64 3.35
506 507 1.338107 AATGTGTCGACCCTGACTGA 58.662 50.000 14.12 0.00 39.64 3.41
507 508 1.800586 CAAATGTGTCGACCCTGACTG 59.199 52.381 14.12 0.00 39.64 3.51
508 509 1.270839 CCAAATGTGTCGACCCTGACT 60.271 52.381 14.12 0.00 39.64 3.41
509 510 1.156736 CCAAATGTGTCGACCCTGAC 58.843 55.000 14.12 4.86 39.37 3.51
510 511 0.762418 ACCAAATGTGTCGACCCTGA 59.238 50.000 14.12 0.00 0.00 3.86
511 512 1.266718 CAACCAAATGTGTCGACCCTG 59.733 52.381 14.12 2.98 0.00 4.45
512 513 1.604604 CAACCAAATGTGTCGACCCT 58.395 50.000 14.12 0.00 0.00 4.34
513 514 0.596082 CCAACCAAATGTGTCGACCC 59.404 55.000 14.12 0.94 0.00 4.46
514 515 0.596082 CCCAACCAAATGTGTCGACC 59.404 55.000 14.12 5.06 0.00 4.79
515 516 1.265905 GACCCAACCAAATGTGTCGAC 59.734 52.381 9.11 9.11 0.00 4.20
516 517 1.134068 TGACCCAACCAAATGTGTCGA 60.134 47.619 0.00 0.00 0.00 4.20
517 518 1.313772 TGACCCAACCAAATGTGTCG 58.686 50.000 0.00 0.00 0.00 4.35
518 519 3.092334 GTTGACCCAACCAAATGTGTC 57.908 47.619 0.00 0.00 38.30 3.67
532 533 2.721425 TTCGGATTATGGGGTTGACC 57.279 50.000 0.00 0.00 39.11 4.02
533 534 3.951680 ACAATTCGGATTATGGGGTTGAC 59.048 43.478 0.00 0.00 0.00 3.18
534 535 4.243793 ACAATTCGGATTATGGGGTTGA 57.756 40.909 0.00 0.00 0.00 3.18
535 536 5.183140 GGATACAATTCGGATTATGGGGTTG 59.817 44.000 0.00 0.00 0.00 3.77
536 537 5.321927 GGATACAATTCGGATTATGGGGTT 58.678 41.667 0.00 0.00 0.00 4.11
537 538 4.263771 GGGATACAATTCGGATTATGGGGT 60.264 45.833 0.00 0.00 39.74 4.95
538 539 4.263727 TGGGATACAATTCGGATTATGGGG 60.264 45.833 0.00 0.00 39.74 4.96
539 540 4.700213 GTGGGATACAATTCGGATTATGGG 59.300 45.833 0.00 0.00 39.74 4.00
540 541 4.391830 CGTGGGATACAATTCGGATTATGG 59.608 45.833 0.00 0.00 39.74 2.74
541 542 4.994852 ACGTGGGATACAATTCGGATTATG 59.005 41.667 0.00 0.00 39.74 1.90
542 543 5.223449 ACGTGGGATACAATTCGGATTAT 57.777 39.130 0.00 0.00 39.74 1.28
543 544 4.675976 ACGTGGGATACAATTCGGATTA 57.324 40.909 0.00 0.00 39.74 1.75
544 545 3.553828 ACGTGGGATACAATTCGGATT 57.446 42.857 0.00 0.00 39.74 3.01
545 546 3.553828 AACGTGGGATACAATTCGGAT 57.446 42.857 0.00 0.00 39.74 4.18
546 547 3.337694 AAACGTGGGATACAATTCGGA 57.662 42.857 0.00 0.00 39.74 4.55
547 548 3.189702 ACAAAACGTGGGATACAATTCGG 59.810 43.478 0.00 0.00 39.74 4.30
548 549 4.155449 CACAAAACGTGGGATACAATTCG 58.845 43.478 0.00 0.00 42.34 3.34
560 561 3.443037 TCATCAAAAGCCACAAAACGTG 58.557 40.909 0.00 0.00 45.92 4.49
561 562 3.791973 TCATCAAAAGCCACAAAACGT 57.208 38.095 0.00 0.00 0.00 3.99
562 563 6.761731 TTATTCATCAAAAGCCACAAAACG 57.238 33.333 0.00 0.00 0.00 3.60
563 564 8.141835 AGTTTATTCATCAAAAGCCACAAAAC 57.858 30.769 0.00 0.00 0.00 2.43
564 565 8.610896 CAAGTTTATTCATCAAAAGCCACAAAA 58.389 29.630 0.00 0.00 0.00 2.44
565 566 7.226325 CCAAGTTTATTCATCAAAAGCCACAAA 59.774 33.333 0.00 0.00 0.00 2.83
566 567 6.705381 CCAAGTTTATTCATCAAAAGCCACAA 59.295 34.615 0.00 0.00 0.00 3.33
567 568 6.222389 CCAAGTTTATTCATCAAAAGCCACA 58.778 36.000 0.00 0.00 0.00 4.17
568 569 5.120674 GCCAAGTTTATTCATCAAAAGCCAC 59.879 40.000 0.00 0.00 0.00 5.01
569 570 5.011943 AGCCAAGTTTATTCATCAAAAGCCA 59.988 36.000 0.00 0.00 0.00 4.75
570 571 5.482006 AGCCAAGTTTATTCATCAAAAGCC 58.518 37.500 0.00 0.00 0.00 4.35
571 572 8.707938 AATAGCCAAGTTTATTCATCAAAAGC 57.292 30.769 0.00 0.00 0.00 3.51
573 574 9.651913 GGAAATAGCCAAGTTTATTCATCAAAA 57.348 29.630 0.00 0.00 0.00 2.44
574 575 8.257306 GGGAAATAGCCAAGTTTATTCATCAAA 58.743 33.333 0.00 0.00 0.00 2.69
575 576 7.619302 AGGGAAATAGCCAAGTTTATTCATCAA 59.381 33.333 0.00 0.00 0.00 2.57
576 577 7.125391 AGGGAAATAGCCAAGTTTATTCATCA 58.875 34.615 0.00 0.00 0.00 3.07
577 578 7.285401 TGAGGGAAATAGCCAAGTTTATTCATC 59.715 37.037 0.00 0.00 0.00 2.92
578 579 7.125391 TGAGGGAAATAGCCAAGTTTATTCAT 58.875 34.615 0.00 0.00 0.00 2.57
579 580 6.489603 TGAGGGAAATAGCCAAGTTTATTCA 58.510 36.000 0.00 0.00 0.00 2.57
580 581 7.404671 TTGAGGGAAATAGCCAAGTTTATTC 57.595 36.000 0.00 0.00 0.00 1.75
581 582 7.790782 TTTGAGGGAAATAGCCAAGTTTATT 57.209 32.000 0.00 0.00 0.00 1.40
582 583 7.790782 TTTTGAGGGAAATAGCCAAGTTTAT 57.209 32.000 0.00 0.00 0.00 1.40
583 584 7.507616 TCTTTTTGAGGGAAATAGCCAAGTTTA 59.492 33.333 0.00 0.00 0.00 2.01
584 585 6.326323 TCTTTTTGAGGGAAATAGCCAAGTTT 59.674 34.615 0.00 0.00 0.00 2.66
585 586 5.838521 TCTTTTTGAGGGAAATAGCCAAGTT 59.161 36.000 0.00 0.00 0.00 2.66
586 587 5.393866 TCTTTTTGAGGGAAATAGCCAAGT 58.606 37.500 0.00 0.00 0.00 3.16
587 588 5.982890 TCTTTTTGAGGGAAATAGCCAAG 57.017 39.130 0.00 0.00 0.00 3.61
588 589 6.739331 TTTCTTTTTGAGGGAAATAGCCAA 57.261 33.333 0.00 0.00 0.00 4.52
589 590 6.326323 ACTTTTCTTTTTGAGGGAAATAGCCA 59.674 34.615 0.00 0.00 0.00 4.75
590 591 6.759272 ACTTTTCTTTTTGAGGGAAATAGCC 58.241 36.000 0.00 0.00 0.00 3.93
591 592 7.926018 TCAACTTTTCTTTTTGAGGGAAATAGC 59.074 33.333 0.00 0.00 0.00 2.97
592 593 9.249457 GTCAACTTTTCTTTTTGAGGGAAATAG 57.751 33.333 0.00 0.00 29.97 1.73
593 594 8.754080 TGTCAACTTTTCTTTTTGAGGGAAATA 58.246 29.630 0.00 0.00 29.97 1.40
594 595 7.619965 TGTCAACTTTTCTTTTTGAGGGAAAT 58.380 30.769 0.00 0.00 29.97 2.17
595 596 6.998802 TGTCAACTTTTCTTTTTGAGGGAAA 58.001 32.000 0.00 0.00 29.97 3.13
596 597 6.597832 TGTCAACTTTTCTTTTTGAGGGAA 57.402 33.333 0.00 0.00 29.97 3.97
597 598 6.183360 GGATGTCAACTTTTCTTTTTGAGGGA 60.183 38.462 0.00 0.00 29.97 4.20
598 599 5.985530 GGATGTCAACTTTTCTTTTTGAGGG 59.014 40.000 0.00 0.00 29.97 4.30
599 600 6.476706 GTGGATGTCAACTTTTCTTTTTGAGG 59.523 38.462 0.00 0.00 29.97 3.86
600 601 6.476706 GGTGGATGTCAACTTTTCTTTTTGAG 59.523 38.462 0.00 0.00 29.97 3.02
601 602 6.071108 TGGTGGATGTCAACTTTTCTTTTTGA 60.071 34.615 0.00 0.00 33.29 2.69
602 603 6.105333 TGGTGGATGTCAACTTTTCTTTTTG 58.895 36.000 0.00 0.00 33.29 2.44
603 604 6.293004 TGGTGGATGTCAACTTTTCTTTTT 57.707 33.333 0.00 0.00 33.29 1.94
604 605 5.163416 CCTGGTGGATGTCAACTTTTCTTTT 60.163 40.000 0.00 0.00 33.29 2.27
605 606 4.342092 CCTGGTGGATGTCAACTTTTCTTT 59.658 41.667 0.00 0.00 33.29 2.52
606 607 3.891366 CCTGGTGGATGTCAACTTTTCTT 59.109 43.478 0.00 0.00 33.29 2.52
607 608 3.490348 CCTGGTGGATGTCAACTTTTCT 58.510 45.455 0.00 0.00 33.29 2.52
608 609 2.558359 CCCTGGTGGATGTCAACTTTTC 59.442 50.000 0.00 0.00 35.39 2.29
609 610 2.597455 CCCTGGTGGATGTCAACTTTT 58.403 47.619 0.00 0.00 35.39 2.27
610 611 1.823250 GCCCTGGTGGATGTCAACTTT 60.823 52.381 0.00 0.00 35.39 2.66
611 612 0.251341 GCCCTGGTGGATGTCAACTT 60.251 55.000 0.00 0.00 35.39 2.66
612 613 1.380302 GCCCTGGTGGATGTCAACT 59.620 57.895 0.00 0.00 35.39 3.16
613 614 0.962356 CTGCCCTGGTGGATGTCAAC 60.962 60.000 0.00 0.00 35.39 3.18
614 615 1.379916 CTGCCCTGGTGGATGTCAA 59.620 57.895 0.00 0.00 35.39 3.18
615 616 2.605607 CCTGCCCTGGTGGATGTCA 61.606 63.158 0.00 0.00 35.39 3.58
616 617 1.852157 TTCCTGCCCTGGTGGATGTC 61.852 60.000 0.00 0.00 35.39 3.06
617 618 1.852157 TTCCTGCCCTGGTGGATGT 60.852 57.895 0.00 0.00 35.39 3.06
618 619 1.077212 CTTCCTGCCCTGGTGGATG 60.077 63.158 0.00 0.00 35.39 3.51
619 620 2.311854 CCTTCCTGCCCTGGTGGAT 61.312 63.158 0.00 0.00 35.39 3.41
620 621 2.935481 CCTTCCTGCCCTGGTGGA 60.935 66.667 0.00 0.00 35.39 4.02
621 622 4.748144 GCCTTCCTGCCCTGGTGG 62.748 72.222 0.00 0.00 37.09 4.61
622 623 4.748144 GGCCTTCCTGCCCTGGTG 62.748 72.222 0.00 0.00 46.11 4.17
632 633 1.141858 CCACTAAGATGAGGGCCTTCC 59.858 57.143 13.07 0.00 0.00 3.46
633 634 2.119495 TCCACTAAGATGAGGGCCTTC 58.881 52.381 7.89 8.18 0.00 3.46
634 635 1.840635 GTCCACTAAGATGAGGGCCTT 59.159 52.381 7.89 0.00 0.00 4.35
635 636 1.501582 GTCCACTAAGATGAGGGCCT 58.498 55.000 5.25 5.25 0.00 5.19
636 637 0.105039 CGTCCACTAAGATGAGGGCC 59.895 60.000 0.00 0.00 0.00 5.80
637 638 1.067821 CTCGTCCACTAAGATGAGGGC 59.932 57.143 3.34 0.00 43.39 5.19
638 639 2.359531 GTCTCGTCCACTAAGATGAGGG 59.640 54.545 10.10 0.00 45.93 4.30
639 640 3.283751 AGTCTCGTCCACTAAGATGAGG 58.716 50.000 10.10 0.00 45.93 3.86
640 641 4.396478 TCAAGTCTCGTCCACTAAGATGAG 59.604 45.833 4.70 4.70 46.85 2.90
641 642 4.156190 GTCAAGTCTCGTCCACTAAGATGA 59.844 45.833 0.00 0.00 0.00 2.92
642 643 4.156922 AGTCAAGTCTCGTCCACTAAGATG 59.843 45.833 0.00 0.00 0.00 2.90
643 644 4.156922 CAGTCAAGTCTCGTCCACTAAGAT 59.843 45.833 0.00 0.00 0.00 2.40
644 645 3.502595 CAGTCAAGTCTCGTCCACTAAGA 59.497 47.826 0.00 0.00 0.00 2.10
645 646 3.827625 CAGTCAAGTCTCGTCCACTAAG 58.172 50.000 0.00 0.00 0.00 2.18
646 647 2.030185 GCAGTCAAGTCTCGTCCACTAA 60.030 50.000 0.00 0.00 0.00 2.24
647 648 1.540267 GCAGTCAAGTCTCGTCCACTA 59.460 52.381 0.00 0.00 0.00 2.74
648 649 0.315568 GCAGTCAAGTCTCGTCCACT 59.684 55.000 0.00 0.00 0.00 4.00
649 650 0.315568 AGCAGTCAAGTCTCGTCCAC 59.684 55.000 0.00 0.00 0.00 4.02
650 651 0.598562 GAGCAGTCAAGTCTCGTCCA 59.401 55.000 0.00 0.00 0.00 4.02
651 652 0.109039 GGAGCAGTCAAGTCTCGTCC 60.109 60.000 0.00 0.00 0.00 4.79
652 653 0.109039 GGGAGCAGTCAAGTCTCGTC 60.109 60.000 0.00 0.00 0.00 4.20
653 654 1.536943 GGGGAGCAGTCAAGTCTCGT 61.537 60.000 0.00 0.00 0.00 4.18
654 655 1.216710 GGGGAGCAGTCAAGTCTCG 59.783 63.158 0.00 0.00 0.00 4.04
655 656 0.534873 GAGGGGAGCAGTCAAGTCTC 59.465 60.000 0.00 0.00 0.00 3.36
656 657 0.907230 GGAGGGGAGCAGTCAAGTCT 60.907 60.000 0.00 0.00 0.00 3.24
657 658 1.599576 GGAGGGGAGCAGTCAAGTC 59.400 63.158 0.00 0.00 0.00 3.01
658 659 1.920835 GGGAGGGGAGCAGTCAAGT 60.921 63.158 0.00 0.00 0.00 3.16
659 660 2.993853 GGGAGGGGAGCAGTCAAG 59.006 66.667 0.00 0.00 0.00 3.02
660 661 3.003173 CGGGAGGGGAGCAGTCAA 61.003 66.667 0.00 0.00 0.00 3.18
661 662 4.316823 ACGGGAGGGGAGCAGTCA 62.317 66.667 0.00 0.00 0.00 3.41
662 663 3.775654 CACGGGAGGGGAGCAGTC 61.776 72.222 0.00 0.00 0.00 3.51
663 664 4.640690 ACACGGGAGGGGAGCAGT 62.641 66.667 0.00 0.00 37.82 4.40
664 665 4.087892 CACACGGGAGGGGAGCAG 62.088 72.222 0.00 0.00 37.82 4.24
670 671 4.489771 GATGGGCACACGGGAGGG 62.490 72.222 0.00 0.00 40.95 4.30
671 672 4.489771 GGATGGGCACACGGGAGG 62.490 72.222 0.00 0.00 0.00 4.30
672 673 4.838152 CGGATGGGCACACGGGAG 62.838 72.222 0.00 0.00 0.00 4.30
677 678 3.127533 GAGCACGGATGGGCACAC 61.128 66.667 0.00 0.00 0.00 3.82
678 679 4.408821 GGAGCACGGATGGGCACA 62.409 66.667 0.00 0.00 0.00 4.57
692 693 2.173669 CAAGCCACGTATGCGGGAG 61.174 63.158 7.15 0.00 45.97 4.30
693 694 1.966901 ATCAAGCCACGTATGCGGGA 61.967 55.000 7.15 6.11 45.97 5.14
694 695 1.095228 AATCAAGCCACGTATGCGGG 61.095 55.000 8.39 2.48 43.45 6.13
695 696 0.732571 AAATCAAGCCACGTATGCGG 59.267 50.000 8.39 0.00 43.45 5.69
696 697 1.396648 TCAAATCAAGCCACGTATGCG 59.603 47.619 0.19 0.19 44.93 4.73
697 698 3.698029 ATCAAATCAAGCCACGTATGC 57.302 42.857 1.17 1.17 0.00 3.14
698 699 4.096231 TCCAATCAAATCAAGCCACGTATG 59.904 41.667 0.00 0.00 0.00 2.39
699 700 4.269183 TCCAATCAAATCAAGCCACGTAT 58.731 39.130 0.00 0.00 0.00 3.06
700 701 3.680490 TCCAATCAAATCAAGCCACGTA 58.320 40.909 0.00 0.00 0.00 3.57
701 702 2.513753 TCCAATCAAATCAAGCCACGT 58.486 42.857 0.00 0.00 0.00 4.49
702 703 3.244976 GTTCCAATCAAATCAAGCCACG 58.755 45.455 0.00 0.00 0.00 4.94
703 704 4.255833 TGTTCCAATCAAATCAAGCCAC 57.744 40.909 0.00 0.00 0.00 5.01
704 705 4.952071 TTGTTCCAATCAAATCAAGCCA 57.048 36.364 0.00 0.00 0.00 4.75
705 706 6.806388 ATTTTGTTCCAATCAAATCAAGCC 57.194 33.333 0.00 0.00 35.25 4.35
706 707 8.445493 CCTTATTTTGTTCCAATCAAATCAAGC 58.555 33.333 0.00 0.00 35.25 4.01
707 708 8.445493 GCCTTATTTTGTTCCAATCAAATCAAG 58.555 33.333 0.00 0.00 35.25 3.02
708 709 7.390162 GGCCTTATTTTGTTCCAATCAAATCAA 59.610 33.333 0.00 0.00 35.25 2.57
709 710 6.878389 GGCCTTATTTTGTTCCAATCAAATCA 59.122 34.615 0.00 0.00 35.25 2.57
710 711 6.316140 GGGCCTTATTTTGTTCCAATCAAATC 59.684 38.462 0.84 0.00 35.25 2.17
711 712 6.179756 GGGCCTTATTTTGTTCCAATCAAAT 58.820 36.000 0.84 0.00 35.25 2.32
712 713 5.555966 GGGCCTTATTTTGTTCCAATCAAA 58.444 37.500 0.84 0.00 33.76 2.69
713 714 4.322349 CGGGCCTTATTTTGTTCCAATCAA 60.322 41.667 0.84 0.00 0.00 2.57
714 715 3.194542 CGGGCCTTATTTTGTTCCAATCA 59.805 43.478 0.84 0.00 0.00 2.57
715 716 3.430236 CCGGGCCTTATTTTGTTCCAATC 60.430 47.826 0.84 0.00 0.00 2.67
716 717 2.499693 CCGGGCCTTATTTTGTTCCAAT 59.500 45.455 0.84 0.00 0.00 3.16
717 718 1.896465 CCGGGCCTTATTTTGTTCCAA 59.104 47.619 0.84 0.00 0.00 3.53
718 719 1.203075 ACCGGGCCTTATTTTGTTCCA 60.203 47.619 6.32 0.00 0.00 3.53
719 720 1.475280 GACCGGGCCTTATTTTGTTCC 59.525 52.381 6.32 0.00 0.00 3.62
720 721 1.475280 GGACCGGGCCTTATTTTGTTC 59.525 52.381 23.07 0.00 0.00 3.18
721 722 1.552578 GGACCGGGCCTTATTTTGTT 58.447 50.000 23.07 0.00 0.00 2.83
722 723 0.323999 GGGACCGGGCCTTATTTTGT 60.324 55.000 29.76 0.00 0.00 2.83
723 724 0.323908 TGGGACCGGGCCTTATTTTG 60.324 55.000 29.76 0.00 0.00 2.44
724 725 0.323999 GTGGGACCGGGCCTTATTTT 60.324 55.000 29.76 0.00 0.00 1.82
725 726 1.305287 GTGGGACCGGGCCTTATTT 59.695 57.895 29.76 0.00 0.00 1.40
726 727 2.686572 GGTGGGACCGGGCCTTATT 61.687 63.158 29.76 0.00 0.00 1.40
727 728 3.094498 GGTGGGACCGGGCCTTAT 61.094 66.667 29.76 0.00 0.00 1.73
733 734 1.791695 TTTTAAGGGGTGGGACCGGG 61.792 60.000 6.32 0.00 39.83 5.73
734 735 0.333652 ATTTTAAGGGGTGGGACCGG 59.666 55.000 0.00 0.00 39.83 5.28
735 736 1.004979 TGATTTTAAGGGGTGGGACCG 59.995 52.381 0.00 0.00 39.83 4.79
736 737 2.623239 CCTGATTTTAAGGGGTGGGACC 60.623 54.545 0.00 0.00 37.60 4.46
737 738 2.735151 CCTGATTTTAAGGGGTGGGAC 58.265 52.381 0.00 0.00 0.00 4.46
757 758 7.560796 TCTTTCTAATCTAATCATCTCCCCC 57.439 40.000 0.00 0.00 0.00 5.40
758 759 9.853177 TTTTCTTTCTAATCTAATCATCTCCCC 57.147 33.333 0.00 0.00 0.00 4.81
765 766 8.960591 CCAGCCTTTTTCTTTCTAATCTAATCA 58.039 33.333 0.00 0.00 0.00 2.57
766 767 9.178758 TCCAGCCTTTTTCTTTCTAATCTAATC 57.821 33.333 0.00 0.00 0.00 1.75
767 768 9.533831 TTCCAGCCTTTTTCTTTCTAATCTAAT 57.466 29.630 0.00 0.00 0.00 1.73
768 769 8.793592 GTTCCAGCCTTTTTCTTTCTAATCTAA 58.206 33.333 0.00 0.00 0.00 2.10
769 770 8.164070 AGTTCCAGCCTTTTTCTTTCTAATCTA 58.836 33.333 0.00 0.00 0.00 1.98
770 771 7.007116 AGTTCCAGCCTTTTTCTTTCTAATCT 58.993 34.615 0.00 0.00 0.00 2.40
771 772 7.220741 AGTTCCAGCCTTTTTCTTTCTAATC 57.779 36.000 0.00 0.00 0.00 1.75
772 773 8.885693 ATAGTTCCAGCCTTTTTCTTTCTAAT 57.114 30.769 0.00 0.00 0.00 1.73
773 774 8.706322 AATAGTTCCAGCCTTTTTCTTTCTAA 57.294 30.769 0.00 0.00 0.00 2.10
774 775 8.336801 GAATAGTTCCAGCCTTTTTCTTTCTA 57.663 34.615 0.00 0.00 0.00 2.10
775 776 7.220741 GAATAGTTCCAGCCTTTTTCTTTCT 57.779 36.000 0.00 0.00 0.00 2.52
822 823 1.121378 TAATTGCGTACCGGGGATCA 58.879 50.000 6.32 0.00 0.00 2.92
956 958 2.513204 TCTACCCTCGCCGAGACG 60.513 66.667 17.19 7.66 0.00 4.18
1054 1056 2.606587 CCACCTCCCCTTCCACCAG 61.607 68.421 0.00 0.00 0.00 4.00
1319 1324 3.567478 AGTTTGTTCAAGTCAGAGGCT 57.433 42.857 0.00 0.00 0.00 4.58
1359 1364 1.874872 ACAAAACCTGCAATGCAATGC 59.125 42.857 19.99 19.99 46.58 3.56
1360 1365 3.132160 TCACAAAACCTGCAATGCAATG 58.868 40.909 9.92 6.11 38.41 2.82
1380 1385 8.827677 ACGAGAGCACAAGGTAATAATTAATTC 58.172 33.333 3.39 0.00 0.00 2.17
1433 1438 1.664873 CTCGCAGCAGGAGGATAGG 59.335 63.158 0.00 0.00 0.00 2.57
1496 1501 2.960170 GCCTGCAGCTTCTGGTTG 59.040 61.111 8.66 0.00 38.99 3.77
1501 1506 2.188994 GGATCGCCTGCAGCTTCT 59.811 61.111 8.66 0.00 40.39 2.85
1562 1567 2.120765 CGTATGGACGGTGGGATCA 58.879 57.895 0.00 0.00 45.63 2.92
1621 1626 2.885644 CGATCCTTGTGCCGACGG 60.886 66.667 10.29 10.29 0.00 4.79
1622 1627 1.874019 CTCGATCCTTGTGCCGACG 60.874 63.158 0.00 0.00 0.00 5.12
1623 1628 1.519455 CCTCGATCCTTGTGCCGAC 60.519 63.158 0.00 0.00 0.00 4.79
1652 1657 1.446792 CAGCCGATCAACGAGCAGT 60.447 57.895 0.00 0.00 45.77 4.40
1661 1666 2.181777 GTCTGCGTCAGCCGATCA 59.818 61.111 0.00 0.00 44.33 2.92
1728 1733 1.448540 CGAGCTTGGTCTTGCCGAT 60.449 57.895 0.00 0.00 41.21 4.18
1748 1753 2.082231 GCGCTCTCGTATACCATCCTA 58.918 52.381 0.00 0.00 38.14 2.94
1986 1991 1.303888 CCAGTGGGTTCTGCAGCAT 60.304 57.895 9.47 0.00 34.47 3.79
2114 2119 2.659016 CGGAGAAGCAGCCAGACA 59.341 61.111 0.00 0.00 0.00 3.41
2116 2121 3.313524 TGCGGAGAAGCAGCCAGA 61.314 61.111 0.00 0.00 42.92 3.86
2150 2155 2.091112 CAGCTGGCTCTCGTCGTTG 61.091 63.158 5.57 0.00 0.00 4.10
2151 2156 1.806461 TTCAGCTGGCTCTCGTCGTT 61.806 55.000 15.13 0.00 0.00 3.85
2269 2274 4.760047 CGAGCACCTTCCCCCACG 62.760 72.222 0.00 0.00 0.00 4.94
2301 2306 4.101448 CGGGAGCCCCTTCACCAG 62.101 72.222 8.43 0.00 42.67 4.00
2315 2320 4.873129 CTCATGGCGTCGTCCGGG 62.873 72.222 0.00 0.00 36.94 5.73
2332 2337 3.014085 TAGCACAGGTACAGCGCCC 62.014 63.158 2.29 0.00 0.00 6.13
2387 2392 1.153549 GGGGAACAGCGAGCAGTAG 60.154 63.158 0.00 0.00 0.00 2.57
2415 2420 2.742372 CACCCGCCTTTCGACAGG 60.742 66.667 13.50 13.50 41.67 4.00
2417 2422 3.876589 GAGCACCCGCCTTTCGACA 62.877 63.158 0.00 0.00 41.67 4.35
2436 2441 3.138798 GGCCATCCAGTGCTGCAG 61.139 66.667 10.11 10.11 0.00 4.41
2487 2492 1.228306 CCTCGGCTACCTCCTCGAT 60.228 63.158 0.00 0.00 0.00 3.59
2516 2521 4.116328 TTCCTGCCGACGAGCTCG 62.116 66.667 33.45 33.45 46.33 5.03
2690 2695 0.811281 CCATGTTTCTTCCCGGAAGC 59.189 55.000 20.86 8.97 39.29 3.86
2696 2701 1.508088 CGCAGCCATGTTTCTTCCC 59.492 57.895 0.00 0.00 0.00 3.97
2712 2717 1.043673 AGGATCCACTCTGGTACCGC 61.044 60.000 15.82 0.00 39.03 5.68
2715 2720 4.698575 GAATTCAGGATCCACTCTGGTAC 58.301 47.826 15.82 0.00 39.03 3.34
2724 2729 2.042464 CCTCTCCGAATTCAGGATCCA 58.958 52.381 15.82 0.00 37.13 3.41
2726 2731 2.043227 ACCCTCTCCGAATTCAGGATC 58.957 52.381 16.06 0.00 37.13 3.36
2799 2804 3.200593 CTGGTGATGCAGCCTCGC 61.201 66.667 0.00 2.77 0.00 5.03
2846 2851 3.378512 AGTCTCTGGGATGAGCACAATA 58.621 45.455 0.00 0.00 34.29 1.90
2851 2856 1.482954 CAGAGTCTCTGGGATGAGCA 58.517 55.000 20.50 0.00 40.71 4.26
3035 3040 3.256383 TCGTCGTTCCATCAAGGTTAAGA 59.744 43.478 0.00 0.00 39.02 2.10
3039 3044 2.028476 TGATCGTCGTTCCATCAAGGTT 60.028 45.455 1.01 0.00 39.02 3.50
3046 3051 1.082117 GGCGTTGATCGTCGTTCCAT 61.082 55.000 10.19 0.00 42.13 3.41
3120 3125 1.610102 CCTGTCCTCTTTGCTGGTCAG 60.610 57.143 0.00 0.00 38.56 3.51
3123 3128 1.763770 CCCTGTCCTCTTTGCTGGT 59.236 57.895 0.00 0.00 0.00 4.00
3556 3561 3.317603 TGAACTCTGCATCGATTGACA 57.682 42.857 0.00 0.00 0.00 3.58
3639 3681 5.220662 CCATCCATGTTTCAAGCTTACGTAG 60.221 44.000 0.00 0.00 0.00 3.51
3817 3859 1.093159 GCTCAATTCCCTCAGTGCAG 58.907 55.000 0.00 0.00 0.00 4.41
3908 3986 1.227764 CACAGTCTGCAGCACTGGT 60.228 57.895 31.62 21.60 44.86 4.00
3957 4035 7.885009 TCTCCTGCAATTGATGATCAAATAA 57.115 32.000 12.36 0.00 40.12 1.40
3971 4049 3.718434 TCCATCTTGGTATCTCCTGCAAT 59.282 43.478 0.00 0.00 39.03 3.56
3983 4061 0.749454 GCGCCTTGATCCATCTTGGT 60.749 55.000 0.00 0.00 39.03 3.67
4018 4096 0.671781 GCTTGTGACATCCAGCGAGT 60.672 55.000 0.00 0.00 0.00 4.18
4222 4300 2.125552 CTGCCGACGCCTCATCAA 60.126 61.111 0.00 0.00 0.00 2.57
4254 4332 0.743097 GCAGCCCCAACATCTTGATC 59.257 55.000 0.00 0.00 0.00 2.92
4270 4348 0.322975 ACCAGTACCTGAAGCTGCAG 59.677 55.000 15.56 15.56 32.44 4.41
4292 4370 1.460504 AGAAGCCACTGATGTGCATG 58.539 50.000 0.00 0.00 42.54 4.06
4338 4416 1.371467 TTTCCTTCAGCCATGGGAGA 58.629 50.000 15.13 0.00 0.00 3.71
4460 4538 0.312102 GAGCAGGAAACAGCACAACC 59.688 55.000 0.00 0.00 46.80 3.77
4483 4561 3.941483 CACTCGTGAATGGGATTTAGCTT 59.059 43.478 0.00 0.00 0.00 3.74
4609 4687 4.260170 CTCTCCCATCTTTGACCTTCTTG 58.740 47.826 0.00 0.00 0.00 3.02
4722 4800 5.347907 CGGTTTCAGTACTGTTGATTACTCC 59.652 44.000 21.99 11.22 0.00 3.85
4745 4823 7.006476 CGTACACTGATGTTTGAATTTTGATCG 59.994 37.037 0.00 0.00 40.48 3.69
4868 4946 1.103398 AGTCACTGCCAACCACTTGC 61.103 55.000 0.00 0.00 0.00 4.01
4874 4952 3.127425 ACTTTAGAGTCACTGCCAACC 57.873 47.619 0.00 0.00 0.00 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.