Multiple sequence alignment - TraesCS1B01G169200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G169200 chr1B 100.000 2720 0 0 2266 4985 300332982 300335701 0.000000e+00 5024
1 TraesCS1B01G169200 chr1B 100.000 1882 0 0 1 1882 300330717 300332598 0.000000e+00 3476
2 TraesCS1B01G169200 chr1A 94.076 1570 54 13 2625 4160 260838510 260840074 0.000000e+00 2348
3 TraesCS1B01G169200 chr1A 88.492 1008 59 24 524 1502 260836529 260837508 0.000000e+00 1166
4 TraesCS1B01G169200 chr1A 87.434 756 50 18 4249 4970 260840352 260841096 0.000000e+00 828
5 TraesCS1B01G169200 chr1A 89.700 466 21 10 1 442 260836069 260836531 2.010000e-158 569
6 TraesCS1B01G169200 chr1A 92.754 207 14 1 2266 2471 260838309 260838515 1.050000e-76 298
7 TraesCS1B01G169200 chr1A 97.436 117 3 0 1766 1882 260838166 260838282 3.040000e-47 200
8 TraesCS1B01G169200 chr1D 93.645 1432 56 13 2710 4106 204482486 204483917 0.000000e+00 2108
9 TraesCS1B01G169200 chr1D 91.457 796 41 11 714 1495 204480529 204481311 0.000000e+00 1068
10 TraesCS1B01G169200 chr1D 84.965 705 40 24 4250 4925 204483968 204484635 0.000000e+00 654
11 TraesCS1B01G169200 chr1D 93.548 310 18 2 1574 1882 204481845 204482153 1.260000e-125 460
12 TraesCS1B01G169200 chr1D 88.957 326 15 9 19 330 204479525 204479843 2.820000e-102 383
13 TraesCS1B01G169200 chr1D 87.560 209 14 2 2266 2473 204482180 204482377 1.080000e-56 231
14 TraesCS1B01G169200 chr1D 87.143 210 11 7 524 728 204479953 204480151 1.810000e-54 224
15 TraesCS1B01G169200 chr1D 92.857 154 10 1 2475 2627 401446008 401445855 6.500000e-54 222
16 TraesCS1B01G169200 chr1D 94.565 92 5 0 4154 4245 264165770 264165861 5.200000e-30 143
17 TraesCS1B01G169200 chr1D 91.089 101 6 3 431 529 243753288 243753387 3.130000e-27 134
18 TraesCS1B01G169200 chr1D 92.308 91 7 0 2625 2715 204482370 204482460 4.050000e-26 130
19 TraesCS1B01G169200 chr6B 97.333 150 4 0 2475 2624 678275329 678275180 6.400000e-64 255
20 TraesCS1B01G169200 chr6B 87.156 109 10 4 419 526 20980033 20980138 2.440000e-23 121
21 TraesCS1B01G169200 chr2B 97.279 147 4 0 2478 2624 463277739 463277593 2.980000e-62 250
22 TraesCS1B01G169200 chr2B 96.667 90 2 1 4156 4245 433113289 433113201 1.120000e-31 148
23 TraesCS1B01G169200 chr2B 96.552 87 3 0 4159 4245 380648221 380648135 1.450000e-30 145
24 TraesCS1B01G169200 chr7B 96.000 150 5 1 2475 2624 684381681 684381829 4.990000e-60 243
25 TraesCS1B01G169200 chr7B 92.632 95 5 2 433 526 48190912 48190819 8.700000e-28 135
26 TraesCS1B01G169200 chr6D 93.878 147 8 1 2475 2621 423786863 423787008 2.340000e-53 220
27 TraesCS1B01G169200 chr6D 96.875 96 3 0 4159 4254 231732033 231731938 1.440000e-35 161
28 TraesCS1B01G169200 chr7D 92.667 150 11 0 2473 2622 484832607 484832458 3.020000e-52 217
29 TraesCS1B01G169200 chr7D 91.333 150 13 0 2475 2624 81765007 81764858 6.540000e-49 206
30 TraesCS1B01G169200 chr7A 90.476 147 13 1 2475 2621 729562628 729562773 5.090000e-45 193
31 TraesCS1B01G169200 chr6A 93.269 104 7 0 1574 1677 563382108 563382211 2.400000e-33 154
32 TraesCS1B01G169200 chr5D 92.233 103 8 0 1574 1676 368032541 368032439 4.020000e-31 147
33 TraesCS1B01G169200 chr5D 89.423 104 11 0 1574 1677 564931219 564931322 1.130000e-26 132
34 TraesCS1B01G169200 chr3B 93.204 103 2 2 4157 4254 496317891 496317993 4.020000e-31 147
35 TraesCS1B01G169200 chr3B 93.069 101 2 4 4159 4254 784150485 784150385 5.200000e-30 143
36 TraesCS1B01G169200 chr2D 92.233 103 8 0 1574 1676 605779720 605779618 4.020000e-31 147
37 TraesCS1B01G169200 chr2D 92.308 104 3 3 4156 4254 510215257 510215154 5.200000e-30 143
38 TraesCS1B01G169200 chr2D 91.089 101 9 0 1574 1674 419044905 419045005 2.420000e-28 137
39 TraesCS1B01G169200 chr4D 96.552 87 3 0 4159 4245 392732192 392732106 1.450000e-30 145
40 TraesCS1B01G169200 chr5B 91.262 103 9 0 1574 1676 436098897 436098795 1.870000e-29 141
41 TraesCS1B01G169200 chr5B 91.262 103 9 0 1574 1676 436156442 436156340 1.870000e-29 141
42 TraesCS1B01G169200 chr5B 91.262 103 4 3 4157 4254 458799256 458799358 8.700000e-28 135
43 TraesCS1B01G169200 chr5B 81.098 164 29 2 2471 2633 382791353 382791191 4.050000e-26 130
44 TraesCS1B01G169200 chr5A 91.262 103 9 0 1574 1676 470079602 470079500 1.870000e-29 141
45 TraesCS1B01G169200 chr3D 92.473 93 5 2 435 527 336539268 336539178 1.130000e-26 132
46 TraesCS1B01G169200 chr3D 93.333 90 5 1 436 525 583869077 583868989 1.130000e-26 132
47 TraesCS1B01G169200 chr3D 91.579 95 5 3 436 529 484628973 484629065 1.460000e-25 128
48 TraesCS1B01G169200 chr4B 92.391 92 6 1 436 527 507357776 507357686 4.050000e-26 130
49 TraesCS1B01G169200 chr4B 89.423 104 8 3 434 536 342857069 342857170 1.460000e-25 128
50 TraesCS1B01G169200 chr3A 89.000 100 10 1 434 533 168540325 168540423 6.780000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G169200 chr1B 300330717 300335701 4984 False 4250.00 5024 100.000000 1 4985 2 chr1B.!!$F1 4984
1 TraesCS1B01G169200 chr1A 260836069 260841096 5027 False 901.50 2348 91.648667 1 4970 6 chr1A.!!$F1 4969
2 TraesCS1B01G169200 chr1D 204479525 204484635 5110 False 657.25 2108 89.947875 19 4925 8 chr1D.!!$F3 4906

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
989 1447 0.313672 GCGTGCAAACTCCATCCAAA 59.686 50.0 0.00 0.0 0.00 3.28 F
2486 3530 0.107945 GGTGGAAGAGCAGTGCTAGG 60.108 60.0 19.77 0.0 39.88 3.02 F
3448 4556 0.037326 TTCCGCAAGTAGCACTCAGG 60.037 55.0 0.00 0.0 46.13 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2523 3567 0.039764 TGATCGGAGGGTGACTGAGT 59.960 55.0 0.00 0.0 0.0 3.41 R
3597 4705 0.394216 TGACCATTTCATCAGCCCCG 60.394 55.0 0.00 0.0 0.0 5.73 R
4528 5860 0.033228 CTGCTGATCATCCGGAGTCC 59.967 60.0 11.34 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 2.224079 CGTGATATGTGCCCATGTAAGC 59.776 50.000 0.00 0.00 32.29 3.09
64 65 1.628340 TGTGCCCATGTAAGCTGTAGT 59.372 47.619 0.00 0.00 0.00 2.73
280 301 5.355910 TGCGTTAACTTTGGAGAGTTTTTCT 59.644 36.000 3.71 0.00 40.24 2.52
281 302 5.681543 GCGTTAACTTTGGAGAGTTTTTCTG 59.318 40.000 3.71 0.00 40.24 3.02
289 310 7.931407 ACTTTGGAGAGTTTTTCTGTTGTTTTT 59.069 29.630 0.00 0.00 35.87 1.94
290 311 7.650834 TTGGAGAGTTTTTCTGTTGTTTTTG 57.349 32.000 0.00 0.00 35.87 2.44
291 312 6.162777 TGGAGAGTTTTTCTGTTGTTTTTGG 58.837 36.000 0.00 0.00 35.87 3.28
301 322 2.703007 TGTTGTTTTTGGGGGATTCTGG 59.297 45.455 0.00 0.00 0.00 3.86
307 328 0.783206 TTGGGGGATTCTGGAAGCAA 59.217 50.000 1.14 0.00 0.00 3.91
323 349 5.066375 TGGAAGCAAAGATACGATGGAAATG 59.934 40.000 0.00 0.00 0.00 2.32
354 380 3.365472 ACTTGGCTGGTTTCAGTTTTCT 58.635 40.909 0.00 0.00 42.78 2.52
390 416 1.153168 AAGAGTTGCAGTGCACGGT 60.153 52.632 19.58 4.86 38.71 4.83
394 420 2.124529 TTGCAGTGCACGGTTGGA 60.125 55.556 19.58 6.77 38.71 3.53
418 444 4.156455 TGGATCCCTGCAGAATTTAGTC 57.844 45.455 17.39 3.19 0.00 2.59
437 495 5.924475 AGTCCGAGTGATTTGTACAAAAG 57.076 39.130 23.97 11.32 33.56 2.27
439 497 4.213482 GTCCGAGTGATTTGTACAAAAGCT 59.787 41.667 23.97 19.89 33.56 3.74
440 498 5.407387 GTCCGAGTGATTTGTACAAAAGCTA 59.593 40.000 23.97 8.73 33.56 3.32
441 499 5.407387 TCCGAGTGATTTGTACAAAAGCTAC 59.593 40.000 23.97 18.27 33.56 3.58
442 500 5.408604 CCGAGTGATTTGTACAAAAGCTACT 59.591 40.000 23.97 21.80 33.56 2.57
443 501 6.401153 CCGAGTGATTTGTACAAAAGCTACTC 60.401 42.308 26.87 26.87 33.56 2.59
444 502 6.401153 CGAGTGATTTGTACAAAAGCTACTCC 60.401 42.308 28.41 19.86 33.56 3.85
445 503 6.534634 AGTGATTTGTACAAAAGCTACTCCT 58.465 36.000 23.97 11.95 33.56 3.69
446 504 6.998673 AGTGATTTGTACAAAAGCTACTCCTT 59.001 34.615 23.97 4.38 33.56 3.36
447 505 7.173390 AGTGATTTGTACAAAAGCTACTCCTTC 59.827 37.037 23.97 13.27 33.56 3.46
448 506 7.173390 GTGATTTGTACAAAAGCTACTCCTTCT 59.827 37.037 23.97 3.66 33.56 2.85
449 507 6.861065 TTTGTACAAAAGCTACTCCTTCTG 57.139 37.500 18.54 0.00 0.00 3.02
450 508 5.546621 TGTACAAAAGCTACTCCTTCTGT 57.453 39.130 0.00 0.00 31.47 3.41
451 509 5.539048 TGTACAAAAGCTACTCCTTCTGTC 58.461 41.667 0.00 0.00 29.50 3.51
452 510 4.009370 ACAAAAGCTACTCCTTCTGTCC 57.991 45.455 0.00 0.00 0.00 4.02
453 511 3.244596 ACAAAAGCTACTCCTTCTGTCCC 60.245 47.826 0.00 0.00 0.00 4.46
454 512 2.327325 AAGCTACTCCTTCTGTCCCA 57.673 50.000 0.00 0.00 0.00 4.37
455 513 2.559381 AGCTACTCCTTCTGTCCCAT 57.441 50.000 0.00 0.00 0.00 4.00
456 514 3.689872 AGCTACTCCTTCTGTCCCATA 57.310 47.619 0.00 0.00 0.00 2.74
457 515 3.995636 AGCTACTCCTTCTGTCCCATAA 58.004 45.455 0.00 0.00 0.00 1.90
458 516 4.561752 AGCTACTCCTTCTGTCCCATAAT 58.438 43.478 0.00 0.00 0.00 1.28
459 517 5.716979 AGCTACTCCTTCTGTCCCATAATA 58.283 41.667 0.00 0.00 0.00 0.98
460 518 6.326970 AGCTACTCCTTCTGTCCCATAATAT 58.673 40.000 0.00 0.00 0.00 1.28
461 519 7.479579 AGCTACTCCTTCTGTCCCATAATATA 58.520 38.462 0.00 0.00 0.00 0.86
462 520 7.956315 AGCTACTCCTTCTGTCCCATAATATAA 59.044 37.037 0.00 0.00 0.00 0.98
463 521 8.254508 GCTACTCCTTCTGTCCCATAATATAAG 58.745 40.741 0.00 0.00 0.00 1.73
464 522 9.535170 CTACTCCTTCTGTCCCATAATATAAGA 57.465 37.037 0.00 0.00 0.00 2.10
465 523 8.798975 ACTCCTTCTGTCCCATAATATAAGAA 57.201 34.615 0.00 0.00 0.00 2.52
466 524 8.652290 ACTCCTTCTGTCCCATAATATAAGAAC 58.348 37.037 0.00 0.00 0.00 3.01
467 525 7.667557 TCCTTCTGTCCCATAATATAAGAACG 58.332 38.462 0.00 0.00 0.00 3.95
468 526 7.289317 TCCTTCTGTCCCATAATATAAGAACGT 59.711 37.037 0.00 0.00 0.00 3.99
469 527 7.931948 CCTTCTGTCCCATAATATAAGAACGTT 59.068 37.037 0.00 0.00 0.00 3.99
470 528 9.326413 CTTCTGTCCCATAATATAAGAACGTTT 57.674 33.333 0.46 0.00 0.00 3.60
471 529 9.675464 TTCTGTCCCATAATATAAGAACGTTTT 57.325 29.630 0.46 0.00 0.00 2.43
472 530 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
473 531 9.716507 CTGTCCCATAATATAAGAACGTTTTTG 57.283 33.333 13.87 0.00 0.00 2.44
474 532 9.451002 TGTCCCATAATATAAGAACGTTTTTGA 57.549 29.630 13.87 2.81 0.00 2.69
475 533 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
476 534 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
477 535 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
484 542 8.876275 ATAAGAACGTTTTTGACACTAGTGTA 57.124 30.769 27.98 11.50 45.05 2.90
485 543 6.823678 AGAACGTTTTTGACACTAGTGTAG 57.176 37.500 27.98 14.79 45.05 2.74
486 544 6.335777 AGAACGTTTTTGACACTAGTGTAGT 58.664 36.000 27.98 15.35 45.05 2.73
487 545 6.815142 AGAACGTTTTTGACACTAGTGTAGTT 59.185 34.615 27.98 21.29 45.05 2.24
488 546 6.973229 ACGTTTTTGACACTAGTGTAGTTT 57.027 33.333 27.98 5.50 45.05 2.66
489 547 6.997222 ACGTTTTTGACACTAGTGTAGTTTC 58.003 36.000 27.98 15.61 45.05 2.78
490 548 6.591062 ACGTTTTTGACACTAGTGTAGTTTCA 59.409 34.615 27.98 17.99 45.05 2.69
496 554 6.996106 TGACACTAGTGTAGTTTCAAAAACG 58.004 36.000 27.98 0.00 45.05 3.60
497 555 6.591062 TGACACTAGTGTAGTTTCAAAAACGT 59.409 34.615 27.98 0.00 45.05 3.99
498 556 7.118101 TGACACTAGTGTAGTTTCAAAAACGTT 59.882 33.333 27.98 0.00 45.05 3.99
499 557 7.809665 ACACTAGTGTAGTTTCAAAAACGTTT 58.190 30.769 26.91 7.96 42.90 3.60
500 558 7.747357 ACACTAGTGTAGTTTCAAAAACGTTTG 59.253 33.333 26.91 3.70 42.90 2.93
501 559 7.747357 CACTAGTGTAGTTTCAAAAACGTTTGT 59.253 33.333 15.46 5.99 40.08 2.83
502 560 8.934825 ACTAGTGTAGTTTCAAAAACGTTTGTA 58.065 29.630 15.46 0.00 39.60 2.41
503 561 9.925268 CTAGTGTAGTTTCAAAAACGTTTGTAT 57.075 29.630 15.46 1.15 43.90 2.29
510 568 9.384682 AGTTTCAAAAACGTTTGTATATTACGG 57.615 29.630 15.46 0.00 43.90 4.02
511 569 8.629132 GTTTCAAAAACGTTTGTATATTACGGG 58.371 33.333 15.46 0.00 43.90 5.28
512 570 7.664082 TCAAAAACGTTTGTATATTACGGGA 57.336 32.000 15.46 0.00 43.90 5.14
513 571 7.517321 TCAAAAACGTTTGTATATTACGGGAC 58.483 34.615 15.46 0.00 43.90 4.46
515 573 7.621013 CAAAAACGTTTGTATATTACGGGACGA 60.621 37.037 15.46 0.00 46.79 4.20
529 587 1.204231 GGGACGAGAGGGAGTACAAAC 59.796 57.143 0.00 0.00 0.00 2.93
581 644 5.521735 TCAATATGGTTTTGTTTGTGTGTGC 59.478 36.000 0.00 0.00 0.00 4.57
582 645 2.820059 TGGTTTTGTTTGTGTGTGCA 57.180 40.000 0.00 0.00 0.00 4.57
603 666 1.002990 TGACCATGACCAGCAGCAG 60.003 57.895 0.00 0.00 0.00 4.24
604 667 2.360852 ACCATGACCAGCAGCAGC 60.361 61.111 0.00 0.00 42.56 5.25
605 668 2.360726 CCATGACCAGCAGCAGCA 60.361 61.111 3.17 0.00 45.49 4.41
606 669 2.407428 CCATGACCAGCAGCAGCAG 61.407 63.158 3.17 0.00 45.49 4.24
607 670 2.750637 ATGACCAGCAGCAGCAGC 60.751 61.111 3.17 0.46 45.49 5.25
633 696 0.462759 GGCTGGAAACGGAGATGAGG 60.463 60.000 0.00 0.00 39.98 3.86
651 714 2.579201 CGGCGGTTGGTCTGATCT 59.421 61.111 0.00 0.00 0.00 2.75
684 747 0.526739 GTTTCCCGCACCAACACAAC 60.527 55.000 0.00 0.00 0.00 3.32
710 773 4.371417 ACCCGACCTGTCCGCCTA 62.371 66.667 0.00 0.00 0.00 3.93
714 777 1.290955 CGACCTGTCCGCCTACAAA 59.709 57.895 0.00 0.00 0.00 2.83
715 778 0.320073 CGACCTGTCCGCCTACAAAA 60.320 55.000 0.00 0.00 0.00 2.44
716 779 1.674817 CGACCTGTCCGCCTACAAAAT 60.675 52.381 0.00 0.00 0.00 1.82
717 780 2.007608 GACCTGTCCGCCTACAAAATC 58.992 52.381 0.00 0.00 0.00 2.17
718 781 1.339727 ACCTGTCCGCCTACAAAATCC 60.340 52.381 0.00 0.00 0.00 3.01
720 783 2.432444 CTGTCCGCCTACAAAATCCAA 58.568 47.619 0.00 0.00 0.00 3.53
721 784 2.817258 CTGTCCGCCTACAAAATCCAAA 59.183 45.455 0.00 0.00 0.00 3.28
722 785 2.817258 TGTCCGCCTACAAAATCCAAAG 59.183 45.455 0.00 0.00 0.00 2.77
771 1224 4.207891 TGTATTCCTCTTGGCTTGTCTC 57.792 45.455 0.00 0.00 0.00 3.36
813 1266 1.301716 GCAACGCAGACAGGAGGAA 60.302 57.895 0.00 0.00 0.00 3.36
862 1315 7.604386 CGCAAGAAAGAAAGAAAGAAAGAAAC 58.396 34.615 0.00 0.00 43.02 2.78
864 1317 7.545615 GCAAGAAAGAAAGAAAGAAAGAAACCA 59.454 33.333 0.00 0.00 0.00 3.67
886 1340 0.965866 AGGCGATCGAGTCCTTGACA 60.966 55.000 21.57 0.00 34.60 3.58
896 1350 2.805099 GAGTCCTTGACAAGCACAGAAG 59.195 50.000 11.78 0.00 34.60 2.85
900 1354 2.295349 CCTTGACAAGCACAGAAGCAAT 59.705 45.455 9.85 0.00 36.85 3.56
989 1447 0.313672 GCGTGCAAACTCCATCCAAA 59.686 50.000 0.00 0.00 0.00 3.28
1051 1509 1.616865 TCGCCGGGTATATCTTCCTTG 59.383 52.381 2.18 0.00 0.00 3.61
1056 1514 3.244112 CCGGGTATATCTTCCTTGGACAC 60.244 52.174 0.00 0.00 0.00 3.67
1071 1529 4.618920 TGGACACCCTTACTCTTTTCTC 57.381 45.455 0.00 0.00 0.00 2.87
1112 1574 1.966451 CTGCCGGCGGTCTTTCTTT 60.966 57.895 27.83 0.00 0.00 2.52
1114 1576 2.978018 GCCGGCGGTCTTTCTTTGG 61.978 63.158 28.82 0.00 0.00 3.28
1115 1577 2.561373 CGGCGGTCTTTCTTTGGC 59.439 61.111 0.00 0.00 0.00 4.52
1118 1580 2.561373 CGGTCTTTCTTTGGCCGC 59.439 61.111 0.00 0.00 35.90 6.53
1129 1591 3.550339 TTGGCCGCGCATGTTGTTC 62.550 57.895 8.75 0.00 0.00 3.18
1155 1617 1.086634 GTCGTCATGGAAGCTGCCTC 61.087 60.000 13.40 0.00 0.00 4.70
1158 1620 1.377536 GTCATGGAAGCTGCCTCTTC 58.622 55.000 13.40 6.52 41.21 2.87
1188 1650 2.899339 GATGCTTCGGAGGCCAGC 60.899 66.667 5.01 5.05 0.00 4.85
1189 1651 3.397613 GATGCTTCGGAGGCCAGCT 62.398 63.158 5.01 0.00 34.42 4.24
1225 1687 3.369997 GCAGAGGTAAGGAAGGAAGGAAG 60.370 52.174 0.00 0.00 0.00 3.46
1226 1688 3.198853 CAGAGGTAAGGAAGGAAGGAAGG 59.801 52.174 0.00 0.00 0.00 3.46
1227 1689 3.079226 AGAGGTAAGGAAGGAAGGAAGGA 59.921 47.826 0.00 0.00 0.00 3.36
1228 1690 3.844804 GAGGTAAGGAAGGAAGGAAGGAA 59.155 47.826 0.00 0.00 0.00 3.36
1231 1693 5.044772 AGGTAAGGAAGGAAGGAAGGAATTC 60.045 44.000 0.00 0.00 0.00 2.17
1242 1710 4.530875 AGGAAGGAATTCTTGTGCCTATG 58.469 43.478 5.23 0.00 35.50 2.23
1265 1733 3.673338 GGTTTCCGTTGAAATTAAGCTGC 59.327 43.478 0.00 0.00 42.20 5.25
1292 1774 2.034104 TGCATTGGAGCTGAGATGAC 57.966 50.000 0.00 0.00 34.99 3.06
1296 1778 2.879002 TTGGAGCTGAGATGACGATC 57.121 50.000 0.00 0.00 0.00 3.69
1359 1841 4.083057 GCTGCATATCTACGATCTCAGTCA 60.083 45.833 0.00 0.00 0.00 3.41
1522 2054 9.590451 AATAATTAATAAGCCACATGCATATGC 57.410 29.630 21.09 21.09 44.83 3.14
1523 2055 6.845758 ATTAATAAGCCACATGCATATGCT 57.154 33.333 27.13 11.10 44.83 3.79
1551 2083 1.342082 CGTCTCGCCGTACCAAACTG 61.342 60.000 0.00 0.00 0.00 3.16
1676 2718 2.230992 CGGTCTCCATTTGGCATTTTCA 59.769 45.455 0.00 0.00 34.44 2.69
1701 2743 7.596995 CAGTTTTCACCTTGTCAACAAAAGTTA 59.403 33.333 0.00 0.00 35.15 2.24
1709 2751 7.973944 ACCTTGTCAACAAAAGTTAATCTTGAC 59.026 33.333 0.00 0.00 36.40 3.18
1721 2763 8.519799 AAGTTAATCTTGACTCACCTTTGAAA 57.480 30.769 0.00 0.00 34.77 2.69
1724 2766 9.020813 GTTAATCTTGACTCACCTTTGAAAAAC 57.979 33.333 0.00 0.00 0.00 2.43
1733 2775 7.248437 ACTCACCTTTGAAAAACTTTTAGACG 58.752 34.615 0.00 0.00 0.00 4.18
1746 2788 1.529152 TTAGACGGCCTGCTCGTTCA 61.529 55.000 0.00 0.00 41.22 3.18
1749 2791 2.434884 CGGCCTGCTCGTTCATGT 60.435 61.111 0.00 0.00 0.00 3.21
1753 2795 1.364626 GCCTGCTCGTTCATGTGAGG 61.365 60.000 12.12 0.00 32.78 3.86
2352 3394 7.519002 AGATTTCTTACACAATCACGTAAAGC 58.481 34.615 0.00 0.00 32.61 3.51
2416 3459 5.063204 GCAAAGCAATTTTTCTTTACCCCT 58.937 37.500 0.00 0.00 31.89 4.79
2445 3489 1.001378 CTGCTCCAAAAAGTTGACGGG 60.001 52.381 0.00 0.00 36.83 5.28
2462 3506 2.249139 CGGGAATAGAGTAGGAAGGGG 58.751 57.143 0.00 0.00 0.00 4.79
2473 3517 3.264845 GAAGGGGCCCTGGTGGAA 61.265 66.667 29.60 0.00 35.39 3.53
2474 3518 3.268032 AAGGGGCCCTGGTGGAAG 61.268 66.667 29.60 0.00 35.39 3.46
2475 3519 3.829311 AAGGGGCCCTGGTGGAAGA 62.829 63.158 29.60 0.00 35.39 2.87
2476 3520 3.732849 GGGGCCCTGGTGGAAGAG 61.733 72.222 24.38 0.00 35.39 2.85
2477 3521 4.432741 GGGCCCTGGTGGAAGAGC 62.433 72.222 17.04 0.00 35.39 4.09
2478 3522 3.650950 GGCCCTGGTGGAAGAGCA 61.651 66.667 0.00 0.00 35.39 4.26
2482 3526 3.978272 CTGGTGGAAGAGCAGTGC 58.022 61.111 7.13 7.13 43.98 4.40
2483 3527 1.374190 CTGGTGGAAGAGCAGTGCT 59.626 57.895 19.86 19.86 43.98 4.40
2484 3528 0.610174 CTGGTGGAAGAGCAGTGCTA 59.390 55.000 19.77 0.00 43.98 3.49
2485 3529 0.610174 TGGTGGAAGAGCAGTGCTAG 59.390 55.000 19.77 0.00 39.88 3.42
2486 3530 0.107945 GGTGGAAGAGCAGTGCTAGG 60.108 60.000 19.77 0.00 39.88 3.02
2487 3531 0.742635 GTGGAAGAGCAGTGCTAGGC 60.743 60.000 19.77 9.76 39.88 3.93
2488 3532 1.520342 GGAAGAGCAGTGCTAGGCG 60.520 63.158 19.77 0.00 39.88 5.52
2489 3533 1.216710 GAAGAGCAGTGCTAGGCGT 59.783 57.895 19.77 3.77 39.88 5.68
2490 3534 0.456221 GAAGAGCAGTGCTAGGCGTA 59.544 55.000 19.77 0.00 39.88 4.42
2491 3535 0.173708 AAGAGCAGTGCTAGGCGTAC 59.826 55.000 19.77 3.33 39.88 3.67
2492 3536 1.586564 GAGCAGTGCTAGGCGTACG 60.587 63.158 19.77 11.84 39.88 3.67
2493 3537 1.989966 GAGCAGTGCTAGGCGTACGA 61.990 60.000 19.77 0.00 39.88 3.43
2494 3538 1.065928 GCAGTGCTAGGCGTACGAT 59.934 57.895 21.65 9.17 33.01 3.73
2495 3539 1.209275 GCAGTGCTAGGCGTACGATG 61.209 60.000 21.65 6.17 33.01 3.84
2496 3540 0.380733 CAGTGCTAGGCGTACGATGA 59.619 55.000 21.65 0.98 33.01 2.92
2497 3541 1.100510 AGTGCTAGGCGTACGATGAA 58.899 50.000 21.65 0.00 33.01 2.57
2498 3542 1.197910 GTGCTAGGCGTACGATGAAC 58.802 55.000 21.65 6.05 0.00 3.18
2499 3543 0.812549 TGCTAGGCGTACGATGAACA 59.187 50.000 21.65 8.05 0.00 3.18
2500 3544 1.197910 GCTAGGCGTACGATGAACAC 58.802 55.000 21.65 0.00 0.00 3.32
2501 3545 1.202268 GCTAGGCGTACGATGAACACT 60.202 52.381 21.65 6.92 0.00 3.55
2502 3546 2.734492 GCTAGGCGTACGATGAACACTT 60.734 50.000 21.65 0.00 0.00 3.16
2503 3547 1.710013 AGGCGTACGATGAACACTTG 58.290 50.000 21.65 0.00 0.00 3.16
2504 3548 1.000506 AGGCGTACGATGAACACTTGT 59.999 47.619 21.65 0.00 0.00 3.16
2505 3549 2.229543 AGGCGTACGATGAACACTTGTA 59.770 45.455 21.65 0.00 0.00 2.41
2506 3550 2.343544 GGCGTACGATGAACACTTGTAC 59.656 50.000 21.65 0.00 33.74 2.90
2509 3553 4.795904 GTACGATGAACACTTGTACGAC 57.204 45.455 0.00 0.00 0.00 4.34
2510 3554 3.637998 ACGATGAACACTTGTACGACT 57.362 42.857 0.00 0.00 0.00 4.18
2511 3555 3.973657 ACGATGAACACTTGTACGACTT 58.026 40.909 0.00 0.00 0.00 3.01
2512 3556 4.365723 ACGATGAACACTTGTACGACTTT 58.634 39.130 0.00 0.00 0.00 2.66
2513 3557 5.522456 ACGATGAACACTTGTACGACTTTA 58.478 37.500 0.00 0.00 0.00 1.85
2514 3558 6.154445 ACGATGAACACTTGTACGACTTTAT 58.846 36.000 0.00 0.00 0.00 1.40
2515 3559 7.307694 ACGATGAACACTTGTACGACTTTATA 58.692 34.615 0.00 0.00 0.00 0.98
2516 3560 7.272084 ACGATGAACACTTGTACGACTTTATAC 59.728 37.037 0.00 0.00 0.00 1.47
2517 3561 6.916401 TGAACACTTGTACGACTTTATACG 57.084 37.500 0.00 0.00 0.00 3.06
2518 3562 6.667370 TGAACACTTGTACGACTTTATACGA 58.333 36.000 0.00 0.00 0.00 3.43
2519 3563 6.578545 TGAACACTTGTACGACTTTATACGAC 59.421 38.462 0.00 0.00 0.00 4.34
2520 3564 6.000891 ACACTTGTACGACTTTATACGACA 57.999 37.500 0.00 0.00 0.00 4.35
2521 3565 5.853282 ACACTTGTACGACTTTATACGACAC 59.147 40.000 0.00 0.00 0.00 3.67
2522 3566 6.082338 CACTTGTACGACTTTATACGACACT 58.918 40.000 0.00 0.00 0.00 3.55
2523 3567 7.095229 ACACTTGTACGACTTTATACGACACTA 60.095 37.037 0.00 0.00 0.00 2.74
2524 3568 7.215194 CACTTGTACGACTTTATACGACACTAC 59.785 40.741 0.00 0.00 0.00 2.73
2525 3569 6.968131 TGTACGACTTTATACGACACTACT 57.032 37.500 0.00 0.00 0.00 2.57
2526 3570 6.993878 TGTACGACTTTATACGACACTACTC 58.006 40.000 0.00 0.00 0.00 2.59
2527 3571 6.589907 TGTACGACTTTATACGACACTACTCA 59.410 38.462 0.00 0.00 0.00 3.41
2528 3572 6.104439 ACGACTTTATACGACACTACTCAG 57.896 41.667 0.00 0.00 0.00 3.35
2529 3573 5.641209 ACGACTTTATACGACACTACTCAGT 59.359 40.000 0.00 0.00 34.42 3.41
2530 3574 6.183360 ACGACTTTATACGACACTACTCAGTC 60.183 42.308 0.00 0.00 30.46 3.51
2531 3575 6.183360 CGACTTTATACGACACTACTCAGTCA 60.183 42.308 0.00 0.00 34.48 3.41
2532 3576 6.840075 ACTTTATACGACACTACTCAGTCAC 58.160 40.000 0.00 0.00 34.48 3.67
2533 3577 5.808042 TTATACGACACTACTCAGTCACC 57.192 43.478 0.00 0.00 34.48 4.02
2534 3578 1.245732 ACGACACTACTCAGTCACCC 58.754 55.000 0.00 0.00 34.48 4.61
2535 3579 1.202903 ACGACACTACTCAGTCACCCT 60.203 52.381 0.00 0.00 34.48 4.34
2536 3580 1.469308 CGACACTACTCAGTCACCCTC 59.531 57.143 0.00 0.00 34.48 4.30
2537 3581 1.819903 GACACTACTCAGTCACCCTCC 59.180 57.143 0.00 0.00 34.93 4.30
2538 3582 0.811915 CACTACTCAGTCACCCTCCG 59.188 60.000 0.00 0.00 30.46 4.63
2539 3583 0.697079 ACTACTCAGTCACCCTCCGA 59.303 55.000 0.00 0.00 0.00 4.55
2540 3584 1.285373 ACTACTCAGTCACCCTCCGAT 59.715 52.381 0.00 0.00 0.00 4.18
2541 3585 1.950909 CTACTCAGTCACCCTCCGATC 59.049 57.143 0.00 0.00 0.00 3.69
2542 3586 0.039764 ACTCAGTCACCCTCCGATCA 59.960 55.000 0.00 0.00 0.00 2.92
2543 3587 1.186200 CTCAGTCACCCTCCGATCAA 58.814 55.000 0.00 0.00 0.00 2.57
2544 3588 1.550524 CTCAGTCACCCTCCGATCAAA 59.449 52.381 0.00 0.00 0.00 2.69
2545 3589 1.974957 TCAGTCACCCTCCGATCAAAA 59.025 47.619 0.00 0.00 0.00 2.44
2546 3590 2.076863 CAGTCACCCTCCGATCAAAAC 58.923 52.381 0.00 0.00 0.00 2.43
2547 3591 1.978580 AGTCACCCTCCGATCAAAACT 59.021 47.619 0.00 0.00 0.00 2.66
2548 3592 2.028020 AGTCACCCTCCGATCAAAACTC 60.028 50.000 0.00 0.00 0.00 3.01
2549 3593 2.028020 GTCACCCTCCGATCAAAACTCT 60.028 50.000 0.00 0.00 0.00 3.24
2550 3594 2.028112 TCACCCTCCGATCAAAACTCTG 60.028 50.000 0.00 0.00 0.00 3.35
2551 3595 1.339151 ACCCTCCGATCAAAACTCTGC 60.339 52.381 0.00 0.00 0.00 4.26
2552 3596 1.339055 CCCTCCGATCAAAACTCTGCA 60.339 52.381 0.00 0.00 0.00 4.41
2553 3597 2.636830 CCTCCGATCAAAACTCTGCAT 58.363 47.619 0.00 0.00 0.00 3.96
2554 3598 2.611292 CCTCCGATCAAAACTCTGCATC 59.389 50.000 0.00 0.00 0.00 3.91
2555 3599 3.264947 CTCCGATCAAAACTCTGCATCA 58.735 45.455 0.00 0.00 0.00 3.07
2556 3600 3.264947 TCCGATCAAAACTCTGCATCAG 58.735 45.455 0.00 0.00 0.00 2.90
2557 3601 2.223203 CCGATCAAAACTCTGCATCAGC 60.223 50.000 0.00 0.00 42.57 4.26
2558 3602 2.536329 CGATCAAAACTCTGCATCAGCG 60.536 50.000 0.00 0.00 46.23 5.18
2560 3604 0.455633 CAAAACTCTGCATCAGCGGC 60.456 55.000 0.00 0.00 46.95 6.53
2561 3605 0.890542 AAAACTCTGCATCAGCGGCA 60.891 50.000 1.45 0.00 46.95 5.69
2562 3606 0.679002 AAACTCTGCATCAGCGGCAT 60.679 50.000 1.45 0.00 46.95 4.40
2563 3607 0.679002 AACTCTGCATCAGCGGCATT 60.679 50.000 1.45 0.00 46.95 3.56
2564 3608 1.094073 ACTCTGCATCAGCGGCATTC 61.094 55.000 1.45 0.00 46.95 2.67
2565 3609 2.102394 CTCTGCATCAGCGGCATTCG 62.102 60.000 1.45 0.00 46.95 3.34
2566 3610 2.436469 TGCATCAGCGGCATTCGT 60.436 55.556 1.45 0.00 46.23 3.85
2567 3611 2.023741 GCATCAGCGGCATTCGTG 59.976 61.111 1.45 0.00 41.72 4.35
2568 3612 2.711311 CATCAGCGGCATTCGTGG 59.289 61.111 1.45 0.00 41.72 4.94
2569 3613 2.514592 ATCAGCGGCATTCGTGGG 60.515 61.111 1.45 0.00 41.72 4.61
2570 3614 3.030168 ATCAGCGGCATTCGTGGGA 62.030 57.895 1.45 0.00 41.72 4.37
2571 3615 2.329539 ATCAGCGGCATTCGTGGGAT 62.330 55.000 1.45 0.00 41.72 3.85
2572 3616 2.203070 AGCGGCATTCGTGGGATC 60.203 61.111 1.45 0.00 41.72 3.36
2573 3617 2.513666 GCGGCATTCGTGGGATCA 60.514 61.111 0.00 0.00 41.72 2.92
2574 3618 2.823829 GCGGCATTCGTGGGATCAC 61.824 63.158 0.00 0.00 41.72 3.06
2575 3619 1.153369 CGGCATTCGTGGGATCACT 60.153 57.895 0.00 0.00 41.53 3.41
2576 3620 1.431488 CGGCATTCGTGGGATCACTG 61.431 60.000 0.00 0.00 41.53 3.66
2577 3621 1.097547 GGCATTCGTGGGATCACTGG 61.098 60.000 0.00 0.00 41.53 4.00
2578 3622 1.097547 GCATTCGTGGGATCACTGGG 61.098 60.000 0.00 0.00 41.53 4.45
2579 3623 0.253044 CATTCGTGGGATCACTGGGT 59.747 55.000 0.00 0.00 41.53 4.51
2580 3624 0.541863 ATTCGTGGGATCACTGGGTC 59.458 55.000 0.00 0.00 41.53 4.46
2581 3625 1.884075 TTCGTGGGATCACTGGGTCG 61.884 60.000 0.00 0.00 41.53 4.79
2582 3626 2.584608 GTGGGATCACTGGGTCGG 59.415 66.667 0.00 0.00 40.58 4.79
2583 3627 1.987855 GTGGGATCACTGGGTCGGA 60.988 63.158 0.00 0.00 40.58 4.55
2584 3628 1.987855 TGGGATCACTGGGTCGGAC 60.988 63.158 0.00 0.00 0.00 4.79
2585 3629 1.686110 GGGATCACTGGGTCGGACT 60.686 63.158 8.23 0.00 0.00 3.85
2586 3630 1.517832 GGATCACTGGGTCGGACTG 59.482 63.158 8.23 0.00 0.00 3.51
2587 3631 0.970937 GGATCACTGGGTCGGACTGA 60.971 60.000 8.23 4.24 0.00 3.41
2588 3632 0.895530 GATCACTGGGTCGGACTGAA 59.104 55.000 8.23 0.00 0.00 3.02
2589 3633 1.482593 GATCACTGGGTCGGACTGAAT 59.517 52.381 8.23 0.00 0.00 2.57
2590 3634 0.895530 TCACTGGGTCGGACTGAATC 59.104 55.000 8.23 0.00 0.00 2.52
2591 3635 0.458543 CACTGGGTCGGACTGAATCG 60.459 60.000 8.23 0.00 0.00 3.34
2592 3636 0.898789 ACTGGGTCGGACTGAATCGT 60.899 55.000 8.23 0.00 0.00 3.73
2593 3637 1.100510 CTGGGTCGGACTGAATCGTA 58.899 55.000 8.23 0.00 0.00 3.43
2594 3638 0.813184 TGGGTCGGACTGAATCGTAC 59.187 55.000 8.23 0.00 0.00 3.67
2595 3639 0.813184 GGGTCGGACTGAATCGTACA 59.187 55.000 8.23 0.00 0.00 2.90
2596 3640 1.407979 GGGTCGGACTGAATCGTACAT 59.592 52.381 8.23 0.00 0.00 2.29
2597 3641 2.159142 GGGTCGGACTGAATCGTACATT 60.159 50.000 8.23 0.00 0.00 2.71
2598 3642 3.518590 GGTCGGACTGAATCGTACATTT 58.481 45.455 8.23 0.00 0.00 2.32
2599 3643 3.930848 GGTCGGACTGAATCGTACATTTT 59.069 43.478 8.23 0.00 0.00 1.82
2600 3644 5.104374 GGTCGGACTGAATCGTACATTTTA 58.896 41.667 8.23 0.00 0.00 1.52
2601 3645 5.577945 GGTCGGACTGAATCGTACATTTTAA 59.422 40.000 8.23 0.00 0.00 1.52
2602 3646 6.091169 GGTCGGACTGAATCGTACATTTTAAA 59.909 38.462 8.23 0.00 0.00 1.52
2603 3647 7.171434 GTCGGACTGAATCGTACATTTTAAAG 58.829 38.462 0.00 0.00 0.00 1.85
2604 3648 6.869913 TCGGACTGAATCGTACATTTTAAAGT 59.130 34.615 0.00 0.00 0.00 2.66
2605 3649 7.062605 TCGGACTGAATCGTACATTTTAAAGTC 59.937 37.037 0.00 0.00 0.00 3.01
2606 3650 7.171434 GGACTGAATCGTACATTTTAAAGTCG 58.829 38.462 0.00 0.00 32.92 4.18
2607 3651 7.148689 GGACTGAATCGTACATTTTAAAGTCGT 60.149 37.037 0.00 0.00 32.92 4.34
2608 3652 8.746922 ACTGAATCGTACATTTTAAAGTCGTA 57.253 30.769 0.00 0.00 0.00 3.43
2609 3653 8.642020 ACTGAATCGTACATTTTAAAGTCGTAC 58.358 33.333 11.16 11.16 0.00 3.67
2612 3656 5.176089 CGTACATTTTAAAGTCGTACGCA 57.824 39.130 22.17 0.00 45.82 5.24
2613 3657 5.597852 CGTACATTTTAAAGTCGTACGCAA 58.402 37.500 22.17 0.00 45.82 4.85
2614 3658 6.063898 CGTACATTTTAAAGTCGTACGCAAA 58.936 36.000 22.17 2.87 45.82 3.68
2615 3659 6.242830 CGTACATTTTAAAGTCGTACGCAAAG 59.757 38.462 22.17 7.05 45.82 2.77
2616 3660 4.907582 ACATTTTAAAGTCGTACGCAAAGC 59.092 37.500 11.24 0.00 0.00 3.51
2617 3661 4.533225 TTTTAAAGTCGTACGCAAAGCA 57.467 36.364 11.24 0.00 0.00 3.91
2618 3662 4.533225 TTTAAAGTCGTACGCAAAGCAA 57.467 36.364 11.24 0.00 0.00 3.91
2619 3663 4.735662 TTAAAGTCGTACGCAAAGCAAT 57.264 36.364 11.24 0.00 0.00 3.56
2620 3664 3.619233 AAAGTCGTACGCAAAGCAATT 57.381 38.095 11.24 0.00 0.00 2.32
2621 3665 2.875080 AGTCGTACGCAAAGCAATTC 57.125 45.000 11.24 0.00 0.00 2.17
2622 3666 1.463444 AGTCGTACGCAAAGCAATTCC 59.537 47.619 11.24 0.00 0.00 3.01
2623 3667 0.440758 TCGTACGCAAAGCAATTCCG 59.559 50.000 11.24 0.00 0.00 4.30
2624 3668 1.125847 CGTACGCAAAGCAATTCCGC 61.126 55.000 0.52 0.00 0.00 5.54
2625 3669 0.168128 GTACGCAAAGCAATTCCGCT 59.832 50.000 0.00 0.00 46.67 5.52
2626 3670 0.167908 TACGCAAAGCAATTCCGCTG 59.832 50.000 0.00 0.00 42.89 5.18
2627 3671 1.802715 CGCAAAGCAATTCCGCTGG 60.803 57.895 0.00 0.00 42.89 4.85
2628 3672 1.290009 GCAAAGCAATTCCGCTGGT 59.710 52.632 0.00 0.00 42.89 4.00
2629 3673 1.010419 GCAAAGCAATTCCGCTGGTG 61.010 55.000 0.00 0.00 42.89 4.17
2630 3674 0.388907 CAAAGCAATTCCGCTGGTGG 60.389 55.000 0.00 0.00 42.89 4.61
2631 3675 0.539438 AAAGCAATTCCGCTGGTGGA 60.539 50.000 0.00 0.00 42.89 4.02
2660 3704 2.126071 CCGGTGCACGTCCTACAG 60.126 66.667 11.45 0.00 42.24 2.74
2662 3706 1.588824 CCGGTGCACGTCCTACAGTA 61.589 60.000 11.45 0.00 42.24 2.74
2707 3751 5.571784 TTCTGCTCTTCTTATGCAATTGG 57.428 39.130 7.72 0.00 36.22 3.16
2763 3838 9.628746 TTTACGCGCTAAATATGTATATTCTGA 57.371 29.630 5.73 0.00 32.08 3.27
2789 3867 8.585471 AAACTTGACTCATAATGTTGATGGAT 57.415 30.769 0.00 0.00 0.00 3.41
2790 3868 7.563888 ACTTGACTCATAATGTTGATGGATG 57.436 36.000 0.00 0.00 0.00 3.51
2983 4063 4.873129 ATCAGCCCGCGCTACACG 62.873 66.667 5.56 0.00 46.25 4.49
3154 4234 2.169561 CTCTTCTCCCCACTAGCCTTTC 59.830 54.545 0.00 0.00 0.00 2.62
3156 4236 0.417841 TCTCCCCACTAGCCTTTCCT 59.582 55.000 0.00 0.00 0.00 3.36
3185 4266 1.336755 AGTTTGAATTTTGCGGCGACT 59.663 42.857 12.98 0.00 0.00 4.18
3258 4339 1.059584 TTCAGGGGCTGGAGACAACA 61.060 55.000 0.00 0.00 42.06 3.33
3418 4526 2.346541 GCTCCCAAAGAAGCAGGGC 61.347 63.158 0.00 0.00 42.52 5.19
3448 4556 0.037326 TTCCGCAAGTAGCACTCAGG 60.037 55.000 0.00 0.00 46.13 3.86
3486 4594 1.374252 GACGGTGAGCAATGACGGT 60.374 57.895 0.00 0.00 0.00 4.83
3540 4648 3.322466 AAGGGAGTGGGGCAGACG 61.322 66.667 0.00 0.00 0.00 4.18
3561 4669 1.375523 GCCCTCCACGAACAACGAT 60.376 57.895 0.00 0.00 45.77 3.73
3597 4705 0.240945 CAGTCACCGCCAATGAAACC 59.759 55.000 0.00 0.00 0.00 3.27
3600 4708 2.675075 ACCGCCAATGAAACCGGG 60.675 61.111 6.32 0.00 44.70 5.73
3615 4723 1.103398 CCGGGGCTGATGAAATGGTC 61.103 60.000 0.00 0.00 0.00 4.02
3616 4724 0.394216 CGGGGCTGATGAAATGGTCA 60.394 55.000 0.00 0.00 41.67 4.02
3827 4935 2.038975 TTCAGACCCCCTCGGAGG 59.961 66.667 17.41 17.41 34.64 4.30
3853 4961 3.071206 GCCGAGCACAGGAGGAGA 61.071 66.667 0.00 0.00 0.00 3.71
4115 5229 4.067944 AGGATCACCTATGACCTATCCC 57.932 50.000 0.00 0.00 45.83 3.85
4138 5252 4.276678 CAGGTTTTCAGATTGTCTGCTTGA 59.723 41.667 2.13 0.00 43.95 3.02
4155 5269 3.061161 GCTTGATGCAATAGTTTTTGGCG 59.939 43.478 0.00 0.00 42.31 5.69
4170 5284 2.283824 GGCGTAAGACCTCCTCCAA 58.716 57.895 0.00 0.00 42.36 3.53
4173 5287 1.941325 CGTAAGACCTCCTCCAATGC 58.059 55.000 0.00 0.00 43.02 3.56
4174 5288 1.207089 CGTAAGACCTCCTCCAATGCA 59.793 52.381 0.00 0.00 43.02 3.96
4175 5289 2.633488 GTAAGACCTCCTCCAATGCAC 58.367 52.381 0.00 0.00 0.00 4.57
4176 5290 1.366319 AAGACCTCCTCCAATGCACT 58.634 50.000 0.00 0.00 0.00 4.40
4177 5291 2.254152 AGACCTCCTCCAATGCACTA 57.746 50.000 0.00 0.00 0.00 2.74
4178 5292 2.114616 AGACCTCCTCCAATGCACTAG 58.885 52.381 0.00 0.00 0.00 2.57
4179 5293 1.834263 GACCTCCTCCAATGCACTAGT 59.166 52.381 0.00 0.00 0.00 2.57
4180 5294 1.556911 ACCTCCTCCAATGCACTAGTG 59.443 52.381 18.93 18.93 0.00 2.74
4194 5308 3.452474 CACTAGTGCTAAGATGAGGTGC 58.548 50.000 10.54 0.00 0.00 5.01
4195 5309 3.131933 CACTAGTGCTAAGATGAGGTGCT 59.868 47.826 10.54 0.00 0.00 4.40
4196 5310 4.339530 CACTAGTGCTAAGATGAGGTGCTA 59.660 45.833 10.54 0.00 0.00 3.49
4198 5312 4.399004 AGTGCTAAGATGAGGTGCTAAG 57.601 45.455 0.00 0.00 0.00 2.18
4199 5313 2.869192 GTGCTAAGATGAGGTGCTAAGC 59.131 50.000 0.00 0.00 0.00 3.09
4200 5314 2.501316 TGCTAAGATGAGGTGCTAAGCA 59.499 45.455 0.00 0.00 36.45 3.91
4215 5329 6.668541 TGCTAAGCACATTAAAGAGCTAAG 57.331 37.500 3.08 0.00 34.29 2.18
4216 5330 5.065218 TGCTAAGCACATTAAAGAGCTAAGC 59.935 40.000 3.08 0.00 34.29 3.09
4217 5331 5.065218 GCTAAGCACATTAAAGAGCTAAGCA 59.935 40.000 3.08 0.00 34.29 3.91
4218 5332 5.964958 AAGCACATTAAAGAGCTAAGCAA 57.035 34.783 3.08 0.00 34.29 3.91
4219 5333 5.302357 AGCACATTAAAGAGCTAAGCAAC 57.698 39.130 0.60 0.00 33.62 4.17
4220 5334 5.006386 AGCACATTAAAGAGCTAAGCAACT 58.994 37.500 0.60 0.00 33.62 3.16
4221 5335 6.173339 AGCACATTAAAGAGCTAAGCAACTA 58.827 36.000 0.60 0.00 33.62 2.24
4222 5336 6.655003 AGCACATTAAAGAGCTAAGCAACTAA 59.345 34.615 0.60 0.00 33.62 2.24
4223 5337 7.174946 AGCACATTAAAGAGCTAAGCAACTAAA 59.825 33.333 0.60 0.00 33.62 1.85
4225 5339 8.507249 CACATTAAAGAGCTAAGCAACTAAAGT 58.493 33.333 0.00 0.00 0.00 2.66
4227 5341 8.940952 CATTAAAGAGCTAAGCAACTAAAGTCT 58.059 33.333 0.00 0.00 0.00 3.24
4228 5342 8.535690 TTAAAGAGCTAAGCAACTAAAGTCTC 57.464 34.615 0.00 0.00 0.00 3.36
4229 5343 5.079689 AGAGCTAAGCAACTAAAGTCTCC 57.920 43.478 0.00 0.00 0.00 3.71
4230 5344 4.528596 AGAGCTAAGCAACTAAAGTCTCCA 59.471 41.667 0.00 0.00 0.00 3.86
4232 5346 5.810095 AGCTAAGCAACTAAAGTCTCCAAT 58.190 37.500 0.00 0.00 0.00 3.16
4233 5347 5.645497 AGCTAAGCAACTAAAGTCTCCAATG 59.355 40.000 0.00 0.00 0.00 2.82
4234 5348 4.773323 AAGCAACTAAAGTCTCCAATGC 57.227 40.909 0.00 0.00 0.00 3.56
4237 5351 4.584325 AGCAACTAAAGTCTCCAATGCAAA 59.416 37.500 0.00 0.00 35.11 3.68
4239 5353 5.464168 CAACTAAAGTCTCCAATGCAAAGG 58.536 41.667 0.00 0.00 0.00 3.11
4240 5354 4.729868 ACTAAAGTCTCCAATGCAAAGGT 58.270 39.130 7.57 0.00 0.00 3.50
4241 5355 5.876357 ACTAAAGTCTCCAATGCAAAGGTA 58.124 37.500 7.57 0.00 0.00 3.08
4242 5356 5.705905 ACTAAAGTCTCCAATGCAAAGGTAC 59.294 40.000 7.57 7.51 0.00 3.34
4279 5583 6.173339 TCCTCAACTAAGAATTAAGCACCTG 58.827 40.000 0.00 0.00 0.00 4.00
4325 5631 7.121315 GTGGCACTAATTTTCCTAGATTCAGTT 59.879 37.037 11.13 0.00 0.00 3.16
4343 5649 6.968263 TCAGTTCTAGGGAATCACTAGATG 57.032 41.667 21.56 17.43 44.50 2.90
4355 5664 9.183368 GGGAATCACTAGATGAGAAGAAAAATT 57.817 33.333 0.00 0.00 41.91 1.82
4395 5704 4.569943 ACACCAACATGATCAGACACTAC 58.430 43.478 0.00 0.00 0.00 2.73
4396 5705 4.284490 ACACCAACATGATCAGACACTACT 59.716 41.667 0.00 0.00 0.00 2.57
4397 5706 5.480422 ACACCAACATGATCAGACACTACTA 59.520 40.000 0.00 0.00 0.00 1.82
4398 5707 6.038985 CACCAACATGATCAGACACTACTAG 58.961 44.000 0.00 0.00 0.00 2.57
4399 5708 5.717178 ACCAACATGATCAGACACTACTAGT 59.283 40.000 0.00 0.00 0.00 2.57
4400 5709 6.890268 ACCAACATGATCAGACACTACTAGTA 59.110 38.462 0.00 1.89 0.00 1.82
4401 5710 7.067615 ACCAACATGATCAGACACTACTAGTAG 59.932 40.741 25.30 25.30 39.04 2.57
4402 5711 7.283354 CCAACATGATCAGACACTACTAGTAGA 59.717 40.741 31.93 12.51 36.97 2.59
4403 5712 8.678199 CAACATGATCAGACACTACTAGTAGAA 58.322 37.037 31.93 12.67 36.97 2.10
4404 5713 8.215926 ACATGATCAGACACTACTAGTAGAAC 57.784 38.462 31.93 21.34 36.97 3.01
4405 5714 7.829706 ACATGATCAGACACTACTAGTAGAACA 59.170 37.037 31.93 15.91 36.97 3.18
4406 5715 8.845227 CATGATCAGACACTACTAGTAGAACAT 58.155 37.037 31.93 17.21 36.97 2.71
4408 5717 9.549078 TGATCAGACACTACTAGTAGAACATAG 57.451 37.037 31.93 17.69 36.97 2.23
4409 5718 9.550406 GATCAGACACTACTAGTAGAACATAGT 57.450 37.037 31.93 19.47 36.97 2.12
4514 5846 3.641436 TCCAACCTACATCGTCAGCATAT 59.359 43.478 0.00 0.00 0.00 1.78
4567 5899 4.745649 CAGGGACTTAGCTACACTTACAC 58.254 47.826 0.00 0.00 34.60 2.90
4713 6068 3.382832 CCTCCGAGCCCGTGTCTT 61.383 66.667 0.00 0.00 0.00 3.01
4866 6221 2.587194 CCCTGCATCTCCGCTTCG 60.587 66.667 0.00 0.00 0.00 3.79
4867 6222 3.267860 CCTGCATCTCCGCTTCGC 61.268 66.667 0.00 0.00 0.00 4.70
4963 6318 4.249638 TCTTTTTAGGATGATGGGGTGG 57.750 45.455 0.00 0.00 0.00 4.61
4970 6325 0.552848 GATGATGGGGTGGGTGACAT 59.447 55.000 0.00 0.00 0.00 3.06
4971 6326 1.774254 GATGATGGGGTGGGTGACATA 59.226 52.381 0.00 0.00 0.00 2.29
4972 6327 0.916086 TGATGGGGTGGGTGACATAC 59.084 55.000 0.00 0.00 0.00 2.39
4973 6328 0.916086 GATGGGGTGGGTGACATACA 59.084 55.000 0.00 0.00 0.00 2.29
4974 6329 0.918983 ATGGGGTGGGTGACATACAG 59.081 55.000 0.00 0.00 0.00 2.74
4975 6330 1.204786 TGGGGTGGGTGACATACAGG 61.205 60.000 0.00 0.00 0.00 4.00
4976 6331 1.607612 GGGTGGGTGACATACAGGG 59.392 63.158 0.00 0.00 0.00 4.45
4977 6332 1.077716 GGTGGGTGACATACAGGGC 60.078 63.158 0.00 0.00 0.00 5.19
4978 6333 1.562672 GGTGGGTGACATACAGGGCT 61.563 60.000 0.00 0.00 0.00 5.19
4979 6334 0.392998 GTGGGTGACATACAGGGCTG 60.393 60.000 0.00 0.00 0.00 4.85
4980 6335 0.840288 TGGGTGACATACAGGGCTGT 60.840 55.000 0.00 0.00 46.87 4.40
4981 6336 0.392998 GGGTGACATACAGGGCTGTG 60.393 60.000 0.00 0.00 44.63 3.66
4982 6337 0.324943 GGTGACATACAGGGCTGTGT 59.675 55.000 0.00 0.00 44.63 3.72
4983 6338 1.271379 GGTGACATACAGGGCTGTGTT 60.271 52.381 0.00 0.00 44.63 3.32
4984 6339 2.076863 GTGACATACAGGGCTGTGTTC 58.923 52.381 0.00 0.00 44.63 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 9.445786 GCGCATATTAGTTTACACATAATTTGT 57.554 29.630 0.30 0.00 39.91 2.83
32 33 2.253758 GGGCACATATCACGCGCAT 61.254 57.895 5.73 0.04 38.38 4.73
58 59 4.238514 GTCTCAGCAACCTACAACTACAG 58.761 47.826 0.00 0.00 0.00 2.74
64 65 4.020307 TGATGATGTCTCAGCAACCTACAA 60.020 41.667 0.00 0.00 44.39 2.41
280 301 2.703007 CCAGAATCCCCCAAAAACAACA 59.297 45.455 0.00 0.00 0.00 3.33
281 302 2.969262 TCCAGAATCCCCCAAAAACAAC 59.031 45.455 0.00 0.00 0.00 3.32
289 310 0.783206 TTTGCTTCCAGAATCCCCCA 59.217 50.000 0.00 0.00 0.00 4.96
290 311 1.005924 TCTTTGCTTCCAGAATCCCCC 59.994 52.381 0.00 0.00 0.00 5.40
291 312 2.514458 TCTTTGCTTCCAGAATCCCC 57.486 50.000 0.00 0.00 0.00 4.81
301 322 4.972440 GCATTTCCATCGTATCTTTGCTTC 59.028 41.667 0.00 0.00 0.00 3.86
307 328 3.884693 TGCATGCATTTCCATCGTATCTT 59.115 39.130 18.46 0.00 0.00 2.40
323 349 2.362120 AGCCAAGTCCCTGCATGC 60.362 61.111 11.82 11.82 0.00 4.06
354 380 4.159506 ACTCTTGCTTGCTTTTACACCAAA 59.840 37.500 0.00 0.00 0.00 3.28
390 416 0.329261 CTGCAGGGATCCAAGTCCAA 59.671 55.000 15.23 0.00 40.17 3.53
394 420 3.463048 AAATTCTGCAGGGATCCAAGT 57.537 42.857 15.13 0.00 0.00 3.16
418 444 4.749245 AGCTTTTGTACAAATCACTCGG 57.251 40.909 21.17 7.53 0.00 4.63
437 495 4.965200 ATTATGGGACAGAAGGAGTAGC 57.035 45.455 0.00 0.00 45.00 3.58
439 497 9.892444 TTCTTATATTATGGGACAGAAGGAGTA 57.108 33.333 0.00 0.00 45.00 2.59
440 498 8.652290 GTTCTTATATTATGGGACAGAAGGAGT 58.348 37.037 0.00 0.00 45.00 3.85
441 499 7.815068 CGTTCTTATATTATGGGACAGAAGGAG 59.185 40.741 0.00 0.00 45.00 3.69
442 500 7.289317 ACGTTCTTATATTATGGGACAGAAGGA 59.711 37.037 0.00 0.00 45.00 3.36
443 501 7.442656 ACGTTCTTATATTATGGGACAGAAGG 58.557 38.462 0.00 0.00 45.00 3.46
444 502 8.888579 AACGTTCTTATATTATGGGACAGAAG 57.111 34.615 0.00 0.00 45.00 2.85
449 507 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
450 508 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
451 509 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
457 515 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
458 516 8.876275 ACACTAGTGTCAAAAACGTTCTTATA 57.124 30.769 22.95 0.00 40.24 0.98
459 517 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
460 518 7.975616 ACTACACTAGTGTCAAAAACGTTCTTA 59.024 33.333 31.11 8.36 43.74 2.10
461 519 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
462 520 6.335777 ACTACACTAGTGTCAAAAACGTTCT 58.664 36.000 31.11 5.44 43.74 3.01
463 521 6.579491 ACTACACTAGTGTCAAAAACGTTC 57.421 37.500 31.11 0.00 43.74 3.95
464 522 6.973229 AACTACACTAGTGTCAAAAACGTT 57.027 33.333 31.11 18.57 43.74 3.99
465 523 6.973229 AAACTACACTAGTGTCAAAAACGT 57.027 33.333 31.11 14.47 43.74 3.99
473 531 6.997222 ACGTTTTTGAAACTACACTAGTGTC 58.003 36.000 31.11 17.07 43.74 3.67
474 532 6.973229 ACGTTTTTGAAACTACACTAGTGT 57.027 33.333 30.13 30.13 46.87 3.55
475 533 7.747357 ACAAACGTTTTTGAAACTACACTAGTG 59.253 33.333 21.44 21.44 44.38 2.74
476 534 7.809665 ACAAACGTTTTTGAAACTACACTAGT 58.190 30.769 11.66 0.00 44.38 2.57
477 535 9.925268 ATACAAACGTTTTTGAAACTACACTAG 57.075 29.630 11.66 0.00 44.38 2.57
484 542 9.384682 CCGTAATATACAAACGTTTTTGAAACT 57.615 29.630 11.66 0.00 44.38 2.66
485 543 8.629132 CCCGTAATATACAAACGTTTTTGAAAC 58.371 33.333 11.66 3.57 44.38 2.78
486 544 8.562892 TCCCGTAATATACAAACGTTTTTGAAA 58.437 29.630 11.66 0.00 44.38 2.69
487 545 8.014517 GTCCCGTAATATACAAACGTTTTTGAA 58.985 33.333 11.66 0.00 44.38 2.69
488 546 7.517321 GTCCCGTAATATACAAACGTTTTTGA 58.483 34.615 11.66 0.00 44.38 2.69
489 547 6.462323 CGTCCCGTAATATACAAACGTTTTTG 59.538 38.462 11.66 4.42 46.61 2.44
490 548 6.367422 TCGTCCCGTAATATACAAACGTTTTT 59.633 34.615 11.66 7.99 34.90 1.94
491 549 5.866633 TCGTCCCGTAATATACAAACGTTTT 59.133 36.000 11.66 5.92 34.90 2.43
492 550 5.406649 TCGTCCCGTAATATACAAACGTTT 58.593 37.500 7.96 7.96 34.90 3.60
493 551 4.992688 TCGTCCCGTAATATACAAACGTT 58.007 39.130 0.00 0.00 34.90 3.99
494 552 4.335315 TCTCGTCCCGTAATATACAAACGT 59.665 41.667 0.00 0.00 34.90 3.99
495 553 4.847633 TCTCGTCCCGTAATATACAAACG 58.152 43.478 0.00 0.00 36.42 3.60
496 554 5.218139 CCTCTCGTCCCGTAATATACAAAC 58.782 45.833 0.00 0.00 0.00 2.93
497 555 4.279169 CCCTCTCGTCCCGTAATATACAAA 59.721 45.833 0.00 0.00 0.00 2.83
498 556 3.822735 CCCTCTCGTCCCGTAATATACAA 59.177 47.826 0.00 0.00 0.00 2.41
499 557 3.072915 TCCCTCTCGTCCCGTAATATACA 59.927 47.826 0.00 0.00 0.00 2.29
500 558 3.679389 TCCCTCTCGTCCCGTAATATAC 58.321 50.000 0.00 0.00 0.00 1.47
501 559 3.328931 ACTCCCTCTCGTCCCGTAATATA 59.671 47.826 0.00 0.00 0.00 0.86
502 560 2.107901 ACTCCCTCTCGTCCCGTAATAT 59.892 50.000 0.00 0.00 0.00 1.28
503 561 1.492176 ACTCCCTCTCGTCCCGTAATA 59.508 52.381 0.00 0.00 0.00 0.98
504 562 0.258194 ACTCCCTCTCGTCCCGTAAT 59.742 55.000 0.00 0.00 0.00 1.89
505 563 0.911769 TACTCCCTCTCGTCCCGTAA 59.088 55.000 0.00 0.00 0.00 3.18
506 564 0.179000 GTACTCCCTCTCGTCCCGTA 59.821 60.000 0.00 0.00 0.00 4.02
507 565 1.077858 GTACTCCCTCTCGTCCCGT 60.078 63.158 0.00 0.00 0.00 5.28
508 566 0.679002 TTGTACTCCCTCTCGTCCCG 60.679 60.000 0.00 0.00 0.00 5.14
509 567 1.204231 GTTTGTACTCCCTCTCGTCCC 59.796 57.143 0.00 0.00 0.00 4.46
510 568 1.135460 CGTTTGTACTCCCTCTCGTCC 60.135 57.143 0.00 0.00 0.00 4.79
511 569 1.808945 TCGTTTGTACTCCCTCTCGTC 59.191 52.381 0.00 0.00 0.00 4.20
512 570 1.901591 TCGTTTGTACTCCCTCTCGT 58.098 50.000 0.00 0.00 0.00 4.18
513 571 2.985139 GTTTCGTTTGTACTCCCTCTCG 59.015 50.000 0.00 0.00 0.00 4.04
514 572 3.986277 TGTTTCGTTTGTACTCCCTCTC 58.014 45.455 0.00 0.00 0.00 3.20
515 573 4.411256 TTGTTTCGTTTGTACTCCCTCT 57.589 40.909 0.00 0.00 0.00 3.69
516 574 4.514066 ACATTGTTTCGTTTGTACTCCCTC 59.486 41.667 0.00 0.00 0.00 4.30
517 575 4.457466 ACATTGTTTCGTTTGTACTCCCT 58.543 39.130 0.00 0.00 0.00 4.20
518 576 4.823790 ACATTGTTTCGTTTGTACTCCC 57.176 40.909 0.00 0.00 0.00 4.30
519 577 6.535274 ACTACATTGTTTCGTTTGTACTCC 57.465 37.500 0.00 0.00 0.00 3.85
522 580 9.962759 CCTTATACTACATTGTTTCGTTTGTAC 57.037 33.333 0.00 0.00 0.00 2.90
529 587 6.764877 ATCGCCTTATACTACATTGTTTCG 57.235 37.500 0.00 0.00 0.00 3.46
581 644 0.675837 CTGCTGGTCATGGTCAGGTG 60.676 60.000 14.80 0.00 0.00 4.00
582 645 1.681666 CTGCTGGTCATGGTCAGGT 59.318 57.895 14.80 0.00 0.00 4.00
605 668 4.648626 TTTCCAGCCGCAGCAGCT 62.649 61.111 0.00 0.00 43.56 4.24
606 669 4.410743 GTTTCCAGCCGCAGCAGC 62.411 66.667 0.00 0.00 43.56 5.25
607 670 4.093952 CGTTTCCAGCCGCAGCAG 62.094 66.667 0.00 0.00 43.56 4.24
610 673 2.859273 ATCTCCGTTTCCAGCCGCAG 62.859 60.000 0.00 0.00 0.00 5.18
614 677 0.462759 CCTCATCTCCGTTTCCAGCC 60.463 60.000 0.00 0.00 0.00 4.85
633 696 3.195698 GATCAGACCAACCGCCGC 61.196 66.667 0.00 0.00 0.00 6.53
651 714 2.238521 GGGAAACAAGCAACCATCAGA 58.761 47.619 0.00 0.00 0.00 3.27
684 747 2.113139 AGGTCGGGTGGTTGCTTG 59.887 61.111 0.00 0.00 0.00 4.01
744 1197 7.125811 AGACAAGCCAAGAGGAATACATTACTA 59.874 37.037 0.00 0.00 36.89 1.82
745 1198 6.067217 ACAAGCCAAGAGGAATACATTACT 57.933 37.500 0.00 0.00 36.89 2.24
746 1199 6.116126 AGACAAGCCAAGAGGAATACATTAC 58.884 40.000 0.00 0.00 36.89 1.89
747 1200 6.313519 AGACAAGCCAAGAGGAATACATTA 57.686 37.500 0.00 0.00 36.89 1.90
748 1201 5.184892 AGACAAGCCAAGAGGAATACATT 57.815 39.130 0.00 0.00 36.89 2.71
749 1202 4.681781 CGAGACAAGCCAAGAGGAATACAT 60.682 45.833 0.00 0.00 36.89 2.29
750 1203 3.368427 CGAGACAAGCCAAGAGGAATACA 60.368 47.826 0.00 0.00 36.89 2.29
751 1204 3.190874 CGAGACAAGCCAAGAGGAATAC 58.809 50.000 0.00 0.00 36.89 1.89
752 1205 2.168521 CCGAGACAAGCCAAGAGGAATA 59.831 50.000 0.00 0.00 36.89 1.75
813 1266 2.090437 GGGGTTTCTCCTCTCCTCCTAT 60.090 54.545 0.00 0.00 32.92 2.57
862 1315 0.108138 AGGACTCGATCGCCTTTTGG 60.108 55.000 11.09 0.00 44.18 3.28
864 1317 1.275291 TCAAGGACTCGATCGCCTTTT 59.725 47.619 19.14 4.75 39.91 2.27
886 1340 1.446907 CTCCGATTGCTTCTGTGCTT 58.553 50.000 0.00 0.00 0.00 3.91
989 1447 2.290122 CTTCGCCATGTCCGAGCTCT 62.290 60.000 12.85 0.00 35.96 4.09
1051 1509 4.040584 ACAGAGAAAAGAGTAAGGGTGTCC 59.959 45.833 0.00 0.00 0.00 4.02
1056 1514 3.339141 GGCACAGAGAAAAGAGTAAGGG 58.661 50.000 0.00 0.00 0.00 3.95
1071 1529 2.432444 TCAAATTTCTACGGGGCACAG 58.568 47.619 0.00 0.00 0.00 3.66
1104 1562 1.971167 ATGCGCGGCCAAAGAAAGA 60.971 52.632 8.83 0.00 0.00 2.52
1112 1574 4.036804 GAACAACATGCGCGGCCA 62.037 61.111 8.83 0.00 0.00 5.36
1114 1576 1.797537 GAAGAACAACATGCGCGGC 60.798 57.895 8.83 0.00 0.00 6.53
1115 1577 0.179215 GAGAAGAACAACATGCGCGG 60.179 55.000 8.83 0.00 0.00 6.46
1118 1580 2.159920 CGACAGAGAAGAACAACATGCG 60.160 50.000 0.00 0.00 0.00 4.73
1129 1591 2.094286 AGCTTCCATGACGACAGAGAAG 60.094 50.000 18.61 18.61 39.73 2.85
1155 1617 1.377725 ATCCGCACCTGGCAAGAAG 60.378 57.895 0.00 0.00 45.17 2.85
1158 1620 3.818787 GCATCCGCACCTGGCAAG 61.819 66.667 0.00 0.00 45.17 4.01
1188 1650 3.628646 CTGCCACCTTCCCCCGAAG 62.629 68.421 0.00 0.00 44.47 3.79
1189 1651 3.646715 CTGCCACCTTCCCCCGAA 61.647 66.667 0.00 0.00 0.00 4.30
1225 1687 3.018423 ACCCATAGGCACAAGAATTCC 57.982 47.619 0.65 0.00 36.11 3.01
1226 1688 4.142160 GGAAACCCATAGGCACAAGAATTC 60.142 45.833 0.00 0.00 36.11 2.17
1227 1689 3.769300 GGAAACCCATAGGCACAAGAATT 59.231 43.478 0.00 0.00 36.11 2.17
1228 1690 3.365472 GGAAACCCATAGGCACAAGAAT 58.635 45.455 0.00 0.00 36.11 2.40
1231 1693 1.094785 CGGAAACCCATAGGCACAAG 58.905 55.000 0.00 0.00 36.11 3.16
1242 1710 4.234574 CAGCTTAATTTCAACGGAAACCC 58.765 43.478 0.00 0.00 45.22 4.11
1265 1733 1.103803 AGCTCCAATGCAAGCATCAG 58.896 50.000 8.14 6.19 41.06 2.90
1402 1884 1.509703 CTCACCAGATGGCATCGATG 58.490 55.000 21.27 21.27 39.32 3.84
1520 2052 1.351430 GCGAGACGTGCATGTAAGCA 61.351 55.000 12.53 0.00 43.35 3.91
1521 2053 1.345176 GCGAGACGTGCATGTAAGC 59.655 57.895 12.53 13.66 0.00 3.09
1522 2054 1.742900 CGGCGAGACGTGCATGTAAG 61.743 60.000 12.53 7.49 0.00 2.34
1523 2055 1.803922 CGGCGAGACGTGCATGTAA 60.804 57.895 12.53 0.00 0.00 2.41
1631 2673 2.961062 CTCCATGGAGGCCTTAATTTGG 59.039 50.000 31.14 10.64 38.51 3.28
1676 2718 6.096673 ACTTTTGTTGACAAGGTGAAAACT 57.903 33.333 0.00 0.00 37.15 2.66
1701 2743 7.410120 AGTTTTTCAAAGGTGAGTCAAGATT 57.590 32.000 0.00 0.00 34.49 2.40
1709 2751 6.691388 CCGTCTAAAAGTTTTTCAAAGGTGAG 59.309 38.462 6.10 0.00 34.49 3.51
1721 2763 2.152016 GAGCAGGCCGTCTAAAAGTTT 58.848 47.619 0.00 0.00 0.00 2.66
1724 2766 0.389948 ACGAGCAGGCCGTCTAAAAG 60.390 55.000 0.00 0.00 34.97 2.27
1733 2775 1.364626 CTCACATGAACGAGCAGGCC 61.365 60.000 0.00 0.00 0.00 5.19
1746 2788 3.679389 GTCCACTTGACAATCCTCACAT 58.321 45.455 0.00 0.00 43.85 3.21
1804 2846 7.094032 CCCAGAAATCTAGAGTTTGCAGAATTT 60.094 37.037 6.91 0.00 0.00 1.82
2268 3310 9.401058 GCCACCTAATTTTGCTGATCTATATAT 57.599 33.333 0.00 0.00 0.00 0.86
2280 3322 3.055891 AGAATGGTGCCACCTAATTTTGC 60.056 43.478 16.23 0.00 39.58 3.68
2352 3394 5.870433 TGTAAAATCTGCTCAATGGCATTTG 59.130 36.000 10.65 7.75 41.63 2.32
2416 3459 1.702182 TTTTGGAGCAGGAATGCACA 58.298 45.000 2.73 0.00 37.25 4.57
2437 3481 4.202131 CCTTCCTACTCTATTCCCGTCAAC 60.202 50.000 0.00 0.00 0.00 3.18
2438 3482 3.958798 CCTTCCTACTCTATTCCCGTCAA 59.041 47.826 0.00 0.00 0.00 3.18
2445 3489 1.979308 GGGCCCCTTCCTACTCTATTC 59.021 57.143 12.23 0.00 0.00 1.75
2462 3506 2.045536 CTGCTCTTCCACCAGGGC 60.046 66.667 0.00 0.00 41.16 5.19
2473 3517 1.810532 GTACGCCTAGCACTGCTCT 59.189 57.895 6.86 0.00 40.44 4.09
2474 3518 1.586564 CGTACGCCTAGCACTGCTC 60.587 63.158 6.86 0.00 40.44 4.26
2475 3519 1.384989 ATCGTACGCCTAGCACTGCT 61.385 55.000 11.24 8.95 43.41 4.24
2476 3520 1.065928 ATCGTACGCCTAGCACTGC 59.934 57.895 11.24 0.00 0.00 4.40
2477 3521 0.380733 TCATCGTACGCCTAGCACTG 59.619 55.000 11.24 0.00 0.00 3.66
2478 3522 1.100510 TTCATCGTACGCCTAGCACT 58.899 50.000 11.24 0.00 0.00 4.40
2479 3523 1.197910 GTTCATCGTACGCCTAGCAC 58.802 55.000 11.24 0.00 0.00 4.40
2480 3524 0.812549 TGTTCATCGTACGCCTAGCA 59.187 50.000 11.24 3.29 0.00 3.49
2481 3525 1.197910 GTGTTCATCGTACGCCTAGC 58.802 55.000 11.24 0.52 0.00 3.42
2482 3526 2.846039 AGTGTTCATCGTACGCCTAG 57.154 50.000 11.24 0.00 0.00 3.02
2483 3527 2.229543 ACAAGTGTTCATCGTACGCCTA 59.770 45.455 11.24 0.00 0.00 3.93
2484 3528 1.000506 ACAAGTGTTCATCGTACGCCT 59.999 47.619 11.24 0.00 0.00 5.52
2485 3529 1.425412 ACAAGTGTTCATCGTACGCC 58.575 50.000 11.24 0.00 0.00 5.68
2486 3530 2.026038 CGTACAAGTGTTCATCGTACGC 59.974 50.000 11.24 0.00 45.82 4.42
2487 3531 3.858282 CGTACAAGTGTTCATCGTACG 57.142 47.619 9.53 9.53 46.20 3.67
2488 3532 4.470462 AGTCGTACAAGTGTTCATCGTAC 58.530 43.478 0.00 0.00 0.00 3.67
2489 3533 4.754372 AGTCGTACAAGTGTTCATCGTA 57.246 40.909 0.00 0.00 0.00 3.43
2490 3534 3.637998 AGTCGTACAAGTGTTCATCGT 57.362 42.857 0.00 0.00 0.00 3.73
2491 3535 4.966850 AAAGTCGTACAAGTGTTCATCG 57.033 40.909 0.00 0.00 0.00 3.84
2492 3536 7.482743 TCGTATAAAGTCGTACAAGTGTTCATC 59.517 37.037 0.00 0.00 0.00 2.92
2493 3537 7.272084 GTCGTATAAAGTCGTACAAGTGTTCAT 59.728 37.037 0.00 0.00 0.00 2.57
2494 3538 6.578545 GTCGTATAAAGTCGTACAAGTGTTCA 59.421 38.462 0.00 0.00 0.00 3.18
2495 3539 6.578545 TGTCGTATAAAGTCGTACAAGTGTTC 59.421 38.462 0.00 0.00 0.00 3.18
2496 3540 6.360681 GTGTCGTATAAAGTCGTACAAGTGTT 59.639 38.462 0.00 0.00 0.00 3.32
2497 3541 5.853282 GTGTCGTATAAAGTCGTACAAGTGT 59.147 40.000 0.00 0.00 0.00 3.55
2498 3542 6.082338 AGTGTCGTATAAAGTCGTACAAGTG 58.918 40.000 0.00 0.00 0.00 3.16
2499 3543 6.246420 AGTGTCGTATAAAGTCGTACAAGT 57.754 37.500 0.00 0.00 0.00 3.16
2500 3544 7.459486 AGTAGTGTCGTATAAAGTCGTACAAG 58.541 38.462 0.00 0.00 0.00 3.16
2501 3545 7.117667 TGAGTAGTGTCGTATAAAGTCGTACAA 59.882 37.037 0.00 0.00 0.00 2.41
2502 3546 6.589907 TGAGTAGTGTCGTATAAAGTCGTACA 59.410 38.462 0.00 0.00 0.00 2.90
2503 3547 6.993878 TGAGTAGTGTCGTATAAAGTCGTAC 58.006 40.000 0.00 0.00 0.00 3.67
2504 3548 6.813649 ACTGAGTAGTGTCGTATAAAGTCGTA 59.186 38.462 0.00 0.00 35.34 3.43
2505 3549 5.641209 ACTGAGTAGTGTCGTATAAAGTCGT 59.359 40.000 0.00 0.00 35.34 4.34
2506 3550 6.104439 ACTGAGTAGTGTCGTATAAAGTCG 57.896 41.667 0.00 0.00 35.34 4.18
2507 3551 6.960431 GTGACTGAGTAGTGTCGTATAAAGTC 59.040 42.308 0.00 0.00 37.25 3.01
2508 3552 6.128063 GGTGACTGAGTAGTGTCGTATAAAGT 60.128 42.308 0.00 0.00 37.25 2.66
2509 3553 6.256686 GGTGACTGAGTAGTGTCGTATAAAG 58.743 44.000 0.00 0.00 37.25 1.85
2510 3554 5.124457 GGGTGACTGAGTAGTGTCGTATAAA 59.876 44.000 0.00 0.00 37.25 1.40
2511 3555 4.637534 GGGTGACTGAGTAGTGTCGTATAA 59.362 45.833 0.00 0.00 37.25 0.98
2512 3556 4.080695 AGGGTGACTGAGTAGTGTCGTATA 60.081 45.833 0.00 0.00 37.25 1.47
2513 3557 3.015327 GGGTGACTGAGTAGTGTCGTAT 58.985 50.000 0.00 0.00 37.25 3.06
2514 3558 2.039480 AGGGTGACTGAGTAGTGTCGTA 59.961 50.000 0.00 0.00 37.25 3.43
2515 3559 1.202903 AGGGTGACTGAGTAGTGTCGT 60.203 52.381 0.00 0.00 37.25 4.34
2516 3560 1.469308 GAGGGTGACTGAGTAGTGTCG 59.531 57.143 0.00 0.00 37.25 4.35
2517 3561 1.819903 GGAGGGTGACTGAGTAGTGTC 59.180 57.143 0.00 0.00 37.25 3.67
2518 3562 1.887088 CGGAGGGTGACTGAGTAGTGT 60.887 57.143 0.00 0.00 37.25 3.55
2519 3563 0.811915 CGGAGGGTGACTGAGTAGTG 59.188 60.000 0.00 0.00 37.25 2.74
2520 3564 0.697079 TCGGAGGGTGACTGAGTAGT 59.303 55.000 0.00 0.00 40.66 2.73
2521 3565 1.950909 GATCGGAGGGTGACTGAGTAG 59.049 57.143 0.00 0.00 0.00 2.57
2522 3566 1.283905 TGATCGGAGGGTGACTGAGTA 59.716 52.381 0.00 0.00 0.00 2.59
2523 3567 0.039764 TGATCGGAGGGTGACTGAGT 59.960 55.000 0.00 0.00 0.00 3.41
2524 3568 1.186200 TTGATCGGAGGGTGACTGAG 58.814 55.000 0.00 0.00 0.00 3.35
2525 3569 1.639722 TTTGATCGGAGGGTGACTGA 58.360 50.000 0.00 0.00 0.00 3.41
2526 3570 2.076863 GTTTTGATCGGAGGGTGACTG 58.923 52.381 0.00 0.00 0.00 3.51
2527 3571 1.978580 AGTTTTGATCGGAGGGTGACT 59.021 47.619 0.00 0.00 0.00 3.41
2528 3572 2.028020 AGAGTTTTGATCGGAGGGTGAC 60.028 50.000 0.00 0.00 0.00 3.67
2529 3573 2.028112 CAGAGTTTTGATCGGAGGGTGA 60.028 50.000 0.00 0.00 0.00 4.02
2530 3574 2.350522 CAGAGTTTTGATCGGAGGGTG 58.649 52.381 0.00 0.00 0.00 4.61
2531 3575 1.339151 GCAGAGTTTTGATCGGAGGGT 60.339 52.381 0.00 0.00 0.00 4.34
2532 3576 1.339055 TGCAGAGTTTTGATCGGAGGG 60.339 52.381 0.00 0.00 0.00 4.30
2533 3577 2.099141 TGCAGAGTTTTGATCGGAGG 57.901 50.000 0.00 0.00 0.00 4.30
2534 3578 3.264947 TGATGCAGAGTTTTGATCGGAG 58.735 45.455 0.00 0.00 0.00 4.63
2535 3579 3.264947 CTGATGCAGAGTTTTGATCGGA 58.735 45.455 0.00 0.00 32.44 4.55
2536 3580 2.223203 GCTGATGCAGAGTTTTGATCGG 60.223 50.000 0.00 0.00 39.41 4.18
2537 3581 2.536329 CGCTGATGCAGAGTTTTGATCG 60.536 50.000 0.00 0.00 39.64 3.69
2538 3582 2.223203 CCGCTGATGCAGAGTTTTGATC 60.223 50.000 0.00 0.00 39.64 2.92
2539 3583 1.741706 CCGCTGATGCAGAGTTTTGAT 59.258 47.619 0.00 0.00 39.64 2.57
2540 3584 1.159285 CCGCTGATGCAGAGTTTTGA 58.841 50.000 0.00 0.00 39.64 2.69
2541 3585 0.455633 GCCGCTGATGCAGAGTTTTG 60.456 55.000 0.00 0.00 39.64 2.44
2542 3586 0.890542 TGCCGCTGATGCAGAGTTTT 60.891 50.000 0.00 0.00 39.64 2.43
2543 3587 0.679002 ATGCCGCTGATGCAGAGTTT 60.679 50.000 0.00 0.00 42.92 2.66
2544 3588 0.679002 AATGCCGCTGATGCAGAGTT 60.679 50.000 0.00 0.00 42.92 3.01
2545 3589 1.077930 AATGCCGCTGATGCAGAGT 60.078 52.632 0.00 0.00 42.92 3.24
2546 3590 1.647629 GAATGCCGCTGATGCAGAG 59.352 57.895 0.00 0.00 42.92 3.35
2547 3591 2.175621 CGAATGCCGCTGATGCAGA 61.176 57.895 0.00 0.00 42.92 4.26
2548 3592 2.326897 CGAATGCCGCTGATGCAG 59.673 61.111 0.00 0.00 42.92 4.41
2549 3593 2.436469 ACGAATGCCGCTGATGCA 60.436 55.556 0.00 0.00 43.97 3.96
2550 3594 2.023741 CACGAATGCCGCTGATGC 59.976 61.111 0.00 0.00 43.32 3.91
2551 3595 2.711311 CCACGAATGCCGCTGATG 59.289 61.111 0.00 0.00 43.32 3.07
2552 3596 2.329539 ATCCCACGAATGCCGCTGAT 62.330 55.000 0.00 0.00 43.32 2.90
2553 3597 2.923426 GATCCCACGAATGCCGCTGA 62.923 60.000 0.00 0.00 43.32 4.26
2554 3598 2.514592 ATCCCACGAATGCCGCTG 60.515 61.111 0.00 0.00 43.32 5.18
2555 3599 2.203070 GATCCCACGAATGCCGCT 60.203 61.111 0.00 0.00 43.32 5.52
2556 3600 2.513666 TGATCCCACGAATGCCGC 60.514 61.111 0.00 0.00 43.32 6.53
2557 3601 3.409856 GTGATCCCACGAATGCCG 58.590 61.111 0.00 0.00 45.44 5.69
2565 3609 1.987855 TCCGACCCAGTGATCCCAC 60.988 63.158 0.00 0.00 43.50 4.61
2566 3610 1.987855 GTCCGACCCAGTGATCCCA 60.988 63.158 0.00 0.00 0.00 4.37
2567 3611 1.686110 AGTCCGACCCAGTGATCCC 60.686 63.158 0.00 0.00 0.00 3.85
2568 3612 0.970937 TCAGTCCGACCCAGTGATCC 60.971 60.000 0.00 0.00 0.00 3.36
2569 3613 0.895530 TTCAGTCCGACCCAGTGATC 59.104 55.000 0.00 0.00 0.00 2.92
2570 3614 1.482593 GATTCAGTCCGACCCAGTGAT 59.517 52.381 0.00 0.00 0.00 3.06
2571 3615 0.895530 GATTCAGTCCGACCCAGTGA 59.104 55.000 0.00 0.00 0.00 3.41
2572 3616 0.458543 CGATTCAGTCCGACCCAGTG 60.459 60.000 0.00 0.00 0.00 3.66
2573 3617 0.898789 ACGATTCAGTCCGACCCAGT 60.899 55.000 0.00 0.00 0.00 4.00
2574 3618 1.100510 TACGATTCAGTCCGACCCAG 58.899 55.000 0.00 0.00 0.00 4.45
2575 3619 0.813184 GTACGATTCAGTCCGACCCA 59.187 55.000 0.00 0.00 0.00 4.51
2576 3620 0.813184 TGTACGATTCAGTCCGACCC 59.187 55.000 0.00 0.00 0.00 4.46
2577 3621 2.865343 ATGTACGATTCAGTCCGACC 57.135 50.000 0.00 0.00 0.00 4.79
2578 3622 6.636666 TTAAAATGTACGATTCAGTCCGAC 57.363 37.500 0.00 0.00 0.00 4.79
2579 3623 6.869913 ACTTTAAAATGTACGATTCAGTCCGA 59.130 34.615 0.00 0.00 0.00 4.55
2580 3624 7.057149 ACTTTAAAATGTACGATTCAGTCCG 57.943 36.000 0.00 0.00 0.00 4.79
2581 3625 7.148689 ACGACTTTAAAATGTACGATTCAGTCC 60.149 37.037 0.00 0.00 0.00 3.85
2582 3626 7.727017 ACGACTTTAAAATGTACGATTCAGTC 58.273 34.615 0.00 0.00 0.00 3.51
2583 3627 7.647907 ACGACTTTAAAATGTACGATTCAGT 57.352 32.000 0.00 0.00 0.00 3.41
2591 3635 6.030693 GCTTTGCGTACGACTTTAAAATGTAC 59.969 38.462 21.65 11.46 33.74 2.90
2592 3636 6.072733 GCTTTGCGTACGACTTTAAAATGTA 58.927 36.000 21.65 0.00 0.00 2.29
2593 3637 4.907582 GCTTTGCGTACGACTTTAAAATGT 59.092 37.500 21.65 0.00 0.00 2.71
2594 3638 4.907010 TGCTTTGCGTACGACTTTAAAATG 59.093 37.500 21.65 4.36 0.00 2.32
2595 3639 5.098218 TGCTTTGCGTACGACTTTAAAAT 57.902 34.783 21.65 0.00 0.00 1.82
2596 3640 4.533225 TGCTTTGCGTACGACTTTAAAA 57.467 36.364 21.65 7.79 0.00 1.52
2597 3641 4.533225 TTGCTTTGCGTACGACTTTAAA 57.467 36.364 21.65 10.09 0.00 1.52
2598 3642 4.735662 ATTGCTTTGCGTACGACTTTAA 57.264 36.364 21.65 6.60 0.00 1.52
2599 3643 4.377635 GGAATTGCTTTGCGTACGACTTTA 60.378 41.667 21.65 0.00 0.00 1.85
2600 3644 3.551551 GAATTGCTTTGCGTACGACTTT 58.448 40.909 21.65 0.01 0.00 2.66
2601 3645 2.095919 GGAATTGCTTTGCGTACGACTT 60.096 45.455 21.65 0.00 0.00 3.01
2602 3646 1.463444 GGAATTGCTTTGCGTACGACT 59.537 47.619 21.65 0.00 0.00 4.18
2603 3647 1.785518 CGGAATTGCTTTGCGTACGAC 60.786 52.381 21.65 11.11 43.36 4.34
2604 3648 0.440758 CGGAATTGCTTTGCGTACGA 59.559 50.000 21.65 0.80 43.36 3.43
2605 3649 2.911198 CGGAATTGCTTTGCGTACG 58.089 52.632 11.84 11.84 43.36 3.67
2610 3654 1.010419 CACCAGCGGAATTGCTTTGC 61.010 55.000 1.50 0.00 44.46 3.68
2611 3655 0.388907 CCACCAGCGGAATTGCTTTG 60.389 55.000 1.50 0.00 44.46 2.77
2612 3656 0.539438 TCCACCAGCGGAATTGCTTT 60.539 50.000 1.50 0.00 44.46 3.51
2613 3657 0.539438 TTCCACCAGCGGAATTGCTT 60.539 50.000 1.50 0.00 44.46 3.91
2615 3659 0.532115 ATTTCCACCAGCGGAATTGC 59.468 50.000 1.50 0.00 44.49 3.56
2616 3660 2.609350 CAATTTCCACCAGCGGAATTG 58.391 47.619 1.50 4.07 44.49 2.32
2617 3661 1.550072 CCAATTTCCACCAGCGGAATT 59.450 47.619 1.50 0.00 44.49 2.17
2618 3662 1.185315 CCAATTTCCACCAGCGGAAT 58.815 50.000 1.50 0.00 44.49 3.01
2619 3663 0.111446 TCCAATTTCCACCAGCGGAA 59.889 50.000 1.50 0.00 43.43 4.30
2620 3664 0.111446 TTCCAATTTCCACCAGCGGA 59.889 50.000 1.50 0.00 0.00 5.54
2621 3665 1.185315 ATTCCAATTTCCACCAGCGG 58.815 50.000 0.00 0.00 0.00 5.52
2622 3666 2.417243 GGAATTCCAATTTCCACCAGCG 60.417 50.000 20.04 0.00 35.64 5.18
2623 3667 2.093500 GGGAATTCCAATTTCCACCAGC 60.093 50.000 25.67 0.00 42.61 4.85
2624 3668 2.166254 CGGGAATTCCAATTTCCACCAG 59.834 50.000 25.67 0.00 43.13 4.00
2625 3669 2.175202 CGGGAATTCCAATTTCCACCA 58.825 47.619 25.67 0.00 43.13 4.17
2626 3670 1.480545 CCGGGAATTCCAATTTCCACC 59.519 52.381 25.67 4.30 43.13 4.61
2627 3671 2.094234 CACCGGGAATTCCAATTTCCAC 60.094 50.000 25.67 5.01 43.13 4.02
2628 3672 2.175202 CACCGGGAATTCCAATTTCCA 58.825 47.619 25.67 0.00 43.13 3.53
2629 3673 1.134818 GCACCGGGAATTCCAATTTCC 60.135 52.381 25.67 6.47 40.14 3.13
2630 3674 1.548269 TGCACCGGGAATTCCAATTTC 59.452 47.619 25.67 11.71 37.91 2.17
2631 3675 1.275010 GTGCACCGGGAATTCCAATTT 59.725 47.619 25.67 4.14 37.91 1.82
2632 3676 0.894835 GTGCACCGGGAATTCCAATT 59.105 50.000 25.67 6.00 37.91 2.32
2660 3704 3.064545 GCCTGAAGATGCATCTTGTGTAC 59.935 47.826 39.54 26.44 46.47 2.90
2662 3706 2.089980 GCCTGAAGATGCATCTTGTGT 58.910 47.619 39.54 21.16 46.47 3.72
2677 3721 3.498774 AAGAAGAGCAGAAAAGCCTGA 57.501 42.857 0.00 0.00 36.29 3.86
2707 3751 4.516698 ACTTCATCCATAATCCGCAACATC 59.483 41.667 0.00 0.00 0.00 3.06
2763 3838 8.408043 TCCATCAACATTATGAGTCAAGTTTT 57.592 30.769 0.00 0.00 31.76 2.43
2775 3853 4.091549 GGGCCATCATCCATCAACATTAT 58.908 43.478 4.39 0.00 0.00 1.28
2789 3867 1.701292 CCTGTGATGATAGGGCCATCA 59.299 52.381 17.18 17.18 45.58 3.07
2790 3868 1.612726 GCCTGTGATGATAGGGCCATC 60.613 57.143 6.18 7.66 40.48 3.51
2983 4063 1.351350 AGGAGGTTGTAGGTTTCTGGC 59.649 52.381 0.00 0.00 0.00 4.85
3154 4234 6.074356 CGCAAAATTCAAACTCTTAAACCAGG 60.074 38.462 0.00 0.00 0.00 4.45
3156 4236 5.751028 CCGCAAAATTCAAACTCTTAAACCA 59.249 36.000 0.00 0.00 0.00 3.67
3185 4266 7.411808 AGTTTCCATTAGACCTAGACTAGACA 58.588 38.462 11.27 0.00 0.00 3.41
3317 4398 1.299468 CTCGACTGTATCTGCGCCC 60.299 63.158 4.18 0.00 0.00 6.13
3327 4408 0.805614 CGGTGACTGATCTCGACTGT 59.194 55.000 0.00 0.00 0.00 3.55
3448 4556 2.945008 TCTCATCCGTGGCAATTTCATC 59.055 45.455 0.00 0.00 0.00 2.92
3540 4648 2.281484 TTGTTCGTGGAGGGCTGC 60.281 61.111 0.00 0.00 0.00 5.25
3561 4669 5.592282 GGTGACTGATCTTGACTCTATCTGA 59.408 44.000 0.00 0.00 0.00 3.27
3597 4705 0.394216 TGACCATTTCATCAGCCCCG 60.394 55.000 0.00 0.00 0.00 5.73
3600 4708 3.498927 CTGTTGACCATTTCATCAGCC 57.501 47.619 0.63 0.00 42.46 4.85
3853 4961 0.811281 GCCGCAAACTCCTGCTTTAT 59.189 50.000 0.00 0.00 40.33 1.40
4138 5252 5.399013 GTCTTACGCCAAAAACTATTGCAT 58.601 37.500 0.00 0.00 0.00 3.96
4155 5269 2.237392 AGTGCATTGGAGGAGGTCTTAC 59.763 50.000 0.00 0.00 0.00 2.34
4173 5287 3.131933 AGCACCTCATCTTAGCACTAGTG 59.868 47.826 18.93 18.93 0.00 2.74
4174 5288 3.370104 AGCACCTCATCTTAGCACTAGT 58.630 45.455 0.00 0.00 0.00 2.57
4175 5289 5.521906 TTAGCACCTCATCTTAGCACTAG 57.478 43.478 0.00 0.00 0.00 2.57
4176 5290 4.202161 GCTTAGCACCTCATCTTAGCACTA 60.202 45.833 0.00 0.00 35.68 2.74
4177 5291 3.431486 GCTTAGCACCTCATCTTAGCACT 60.431 47.826 0.00 0.00 35.68 4.40
4178 5292 2.869192 GCTTAGCACCTCATCTTAGCAC 59.131 50.000 0.00 0.00 35.68 4.40
4179 5293 2.501316 TGCTTAGCACCTCATCTTAGCA 59.499 45.455 1.39 0.00 41.02 3.49
4180 5294 3.185246 TGCTTAGCACCTCATCTTAGC 57.815 47.619 1.39 0.00 36.03 3.09
4192 5306 6.668541 CTTAGCTCTTTAATGTGCTTAGCA 57.331 37.500 19.16 1.39 37.80 3.49
4193 5307 5.506181 GCTTAGCTCTTTAATGTGCTTAGC 58.494 41.667 26.30 26.30 45.14 3.09
4194 5308 6.668541 TGCTTAGCTCTTTAATGTGCTTAG 57.331 37.500 19.16 19.14 37.80 2.18
4195 5309 6.655003 AGTTGCTTAGCTCTTTAATGTGCTTA 59.345 34.615 19.16 11.76 37.80 3.09
4196 5310 5.474876 AGTTGCTTAGCTCTTTAATGTGCTT 59.525 36.000 19.16 7.53 37.80 3.91
4198 5312 5.302357 AGTTGCTTAGCTCTTTAATGTGC 57.698 39.130 5.60 7.18 0.00 4.57
4199 5313 8.507249 ACTTTAGTTGCTTAGCTCTTTAATGTG 58.493 33.333 5.60 0.00 0.00 3.21
4200 5314 8.622948 ACTTTAGTTGCTTAGCTCTTTAATGT 57.377 30.769 5.60 5.27 0.00 2.71
4203 5317 7.603024 GGAGACTTTAGTTGCTTAGCTCTTTAA 59.397 37.037 5.60 0.00 0.00 1.52
4204 5318 7.097834 GGAGACTTTAGTTGCTTAGCTCTTTA 58.902 38.462 5.60 0.00 0.00 1.85
4205 5319 5.935206 GGAGACTTTAGTTGCTTAGCTCTTT 59.065 40.000 5.60 0.00 0.00 2.52
4209 5323 4.891992 TGGAGACTTTAGTTGCTTAGCT 57.108 40.909 5.60 0.00 0.00 3.32
4210 5324 5.674820 GCATTGGAGACTTTAGTTGCTTAGC 60.675 44.000 0.00 0.00 0.00 3.09
4211 5325 5.412594 TGCATTGGAGACTTTAGTTGCTTAG 59.587 40.000 4.29 0.00 0.00 2.18
4212 5326 5.312895 TGCATTGGAGACTTTAGTTGCTTA 58.687 37.500 4.29 0.00 0.00 3.09
4214 5328 3.754965 TGCATTGGAGACTTTAGTTGCT 58.245 40.909 4.29 0.00 0.00 3.91
4215 5329 4.503741 TTGCATTGGAGACTTTAGTTGC 57.496 40.909 0.00 0.00 0.00 4.17
4216 5330 5.010012 ACCTTTGCATTGGAGACTTTAGTTG 59.990 40.000 11.80 0.00 0.00 3.16
4217 5331 5.140454 ACCTTTGCATTGGAGACTTTAGTT 58.860 37.500 11.80 0.00 0.00 2.24
4218 5332 4.729868 ACCTTTGCATTGGAGACTTTAGT 58.270 39.130 11.80 0.00 0.00 2.24
4219 5333 5.940470 AGTACCTTTGCATTGGAGACTTTAG 59.060 40.000 11.80 0.00 0.00 1.85
4220 5334 5.876357 AGTACCTTTGCATTGGAGACTTTA 58.124 37.500 11.80 0.00 0.00 1.85
4221 5335 4.729868 AGTACCTTTGCATTGGAGACTTT 58.270 39.130 11.80 0.00 0.00 2.66
4222 5336 4.373156 AGTACCTTTGCATTGGAGACTT 57.627 40.909 11.80 0.00 0.00 3.01
4223 5337 4.074970 CAAGTACCTTTGCATTGGAGACT 58.925 43.478 11.80 10.72 0.00 3.24
4225 5339 4.098914 ACAAGTACCTTTGCATTGGAGA 57.901 40.909 11.80 0.00 0.00 3.71
4227 5341 3.957497 ACAACAAGTACCTTTGCATTGGA 59.043 39.130 11.80 0.00 0.00 3.53
4228 5342 4.320608 ACAACAAGTACCTTTGCATTGG 57.679 40.909 4.20 4.20 0.00 3.16
4229 5343 4.917415 GCTACAACAAGTACCTTTGCATTG 59.083 41.667 0.00 0.00 0.00 2.82
4230 5344 4.827284 AGCTACAACAAGTACCTTTGCATT 59.173 37.500 0.00 0.00 0.00 3.56
4232 5346 3.815809 AGCTACAACAAGTACCTTTGCA 58.184 40.909 0.00 0.00 0.00 4.08
4233 5347 4.830826 AAGCTACAACAAGTACCTTTGC 57.169 40.909 0.00 0.00 26.62 3.68
4234 5348 5.531287 AGGAAAGCTACAACAAGTACCTTTG 59.469 40.000 0.00 0.00 38.24 2.77
4237 5351 4.347000 TGAGGAAAGCTACAACAAGTACCT 59.653 41.667 0.00 0.00 29.53 3.08
4239 5353 5.758784 AGTTGAGGAAAGCTACAACAAGTAC 59.241 40.000 16.61 0.00 43.06 2.73
4240 5354 5.925509 AGTTGAGGAAAGCTACAACAAGTA 58.074 37.500 16.61 0.00 43.06 2.24
4241 5355 4.781934 AGTTGAGGAAAGCTACAACAAGT 58.218 39.130 16.61 10.75 43.06 3.16
4242 5356 6.706270 TCTTAGTTGAGGAAAGCTACAACAAG 59.294 38.462 16.61 15.98 43.06 3.16
4243 5357 6.588204 TCTTAGTTGAGGAAAGCTACAACAA 58.412 36.000 16.61 9.12 43.06 2.83
4244 5358 6.169557 TCTTAGTTGAGGAAAGCTACAACA 57.830 37.500 16.61 5.05 43.06 3.33
4246 5360 9.787435 TTAATTCTTAGTTGAGGAAAGCTACAA 57.213 29.630 0.00 0.00 0.00 2.41
4247 5361 9.436957 CTTAATTCTTAGTTGAGGAAAGCTACA 57.563 33.333 0.00 0.00 0.00 2.74
4279 5583 2.956333 ACTTGCCTGTTGTAAGTTTCCC 59.044 45.455 0.00 0.00 46.22 3.97
4325 5631 7.155442 TCTTCTCATCTAGTGATTCCCTAGA 57.845 40.000 8.12 8.12 43.64 2.43
4343 5649 8.656849 TCGACTACTGCATTAATTTTTCTTCTC 58.343 33.333 0.00 0.00 0.00 2.87
4355 5664 4.081917 TGGTGTTCATCGACTACTGCATTA 60.082 41.667 0.00 0.00 0.00 1.90
4399 5708 9.829507 GGTTCTACTAGACACTACTATGTTCTA 57.170 37.037 0.00 0.00 31.24 2.10
4400 5709 8.327271 TGGTTCTACTAGACACTACTATGTTCT 58.673 37.037 0.00 0.00 31.24 3.01
4401 5710 8.503458 TGGTTCTACTAGACACTACTATGTTC 57.497 38.462 0.00 0.00 31.24 3.18
4402 5711 8.738106 GTTGGTTCTACTAGACACTACTATGTT 58.262 37.037 0.00 0.00 31.24 2.71
4403 5712 7.338957 GGTTGGTTCTACTAGACACTACTATGT 59.661 40.741 0.00 0.00 34.78 2.29
4404 5713 7.338703 TGGTTGGTTCTACTAGACACTACTATG 59.661 40.741 0.00 0.00 0.00 2.23
4405 5714 7.338957 GTGGTTGGTTCTACTAGACACTACTAT 59.661 40.741 0.00 0.00 0.00 2.12
4406 5715 6.656693 GTGGTTGGTTCTACTAGACACTACTA 59.343 42.308 0.00 0.00 0.00 1.82
4407 5716 5.476254 GTGGTTGGTTCTACTAGACACTACT 59.524 44.000 0.00 0.00 0.00 2.57
4408 5717 5.242393 TGTGGTTGGTTCTACTAGACACTAC 59.758 44.000 0.00 0.00 0.00 2.73
4409 5718 5.387788 TGTGGTTGGTTCTACTAGACACTA 58.612 41.667 0.00 0.00 0.00 2.74
4410 5719 4.220724 TGTGGTTGGTTCTACTAGACACT 58.779 43.478 0.00 0.00 0.00 3.55
4411 5720 4.557205 CTGTGGTTGGTTCTACTAGACAC 58.443 47.826 0.00 0.00 0.00 3.67
4412 5721 3.006537 GCTGTGGTTGGTTCTACTAGACA 59.993 47.826 0.00 0.00 0.00 3.41
4413 5722 3.006537 TGCTGTGGTTGGTTCTACTAGAC 59.993 47.826 0.00 0.00 0.00 2.59
4414 5723 3.236047 TGCTGTGGTTGGTTCTACTAGA 58.764 45.455 0.00 0.00 0.00 2.43
4519 5851 2.434336 TCATCCGGAGTCCCATTAGTTG 59.566 50.000 11.34 0.00 0.00 3.16
4528 5860 0.033228 CTGCTGATCATCCGGAGTCC 59.967 60.000 11.34 0.00 0.00 3.85
4567 5899 3.443045 GGGGAAGGCGCACATGTG 61.443 66.667 21.83 21.83 0.00 3.21
4727 6082 3.056328 GTCCTGGGTGAAAGGCGC 61.056 66.667 0.00 0.00 34.56 6.53
4751 6106 2.860293 CACGAATTCCTTGCGCGT 59.140 55.556 8.43 0.00 35.33 6.01
4938 6293 6.013812 CCACCCCATCATCCTAAAAAGAAAAA 60.014 38.462 0.00 0.00 0.00 1.94
4939 6294 5.483583 CCACCCCATCATCCTAAAAAGAAAA 59.516 40.000 0.00 0.00 0.00 2.29
4943 6298 3.299503 CCCACCCCATCATCCTAAAAAG 58.700 50.000 0.00 0.00 0.00 2.27
4963 6318 0.324943 ACACAGCCCTGTATGTCACC 59.675 55.000 0.00 0.00 42.83 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.