Multiple sequence alignment - TraesCS1B01G168900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G168900 chr1B 100.000 2651 0 0 1 2651 299978971 299976321 0.000000e+00 4896.0
1 TraesCS1B01G168900 chr1B 100.000 2275 0 0 3044 5318 299975928 299973654 0.000000e+00 4202.0
2 TraesCS1B01G168900 chr1B 86.538 104 14 0 281 384 39071348 39071451 1.210000e-21 115.0
3 TraesCS1B01G168900 chr1B 100.000 44 0 0 4966 5009 299973961 299973918 1.230000e-11 82.4
4 TraesCS1B01G168900 chr1B 100.000 44 0 0 5011 5054 299974006 299973963 1.230000e-11 82.4
5 TraesCS1B01G168900 chr1D 96.359 1950 40 10 3084 5009 204296389 204294447 0.000000e+00 3179.0
6 TraesCS1B01G168900 chr1D 91.156 2205 80 35 517 2651 204298612 204296453 0.000000e+00 2885.0
7 TraesCS1B01G168900 chr1D 96.104 308 12 0 5011 5318 204294490 204294183 2.210000e-138 503.0
8 TraesCS1B01G168900 chr1A 95.386 1929 47 19 3084 4979 259995975 259994056 0.000000e+00 3031.0
9 TraesCS1B01G168900 chr1A 92.021 1717 82 25 578 2263 259998076 259996384 0.000000e+00 2361.0
10 TraesCS1B01G168900 chr1A 93.803 355 13 4 2300 2651 259996383 259996035 4.720000e-145 525.0
11 TraesCS1B01G168900 chr1A 92.237 219 13 2 5016 5231 259993597 259993380 1.860000e-79 307.0
12 TraesCS1B01G168900 chr1A 84.536 97 15 0 288 384 108162980 108163076 4.380000e-16 97.1
13 TraesCS1B01G168900 chr2D 85.714 105 14 1 281 384 16322765 16322869 5.630000e-20 110.0
14 TraesCS1B01G168900 chr2D 84.694 98 15 0 287 384 541079104 541079201 1.220000e-16 99.0
15 TraesCS1B01G168900 chr7A 82.759 87 15 0 285 371 523626409 523626495 1.590000e-10 78.7
16 TraesCS1B01G168900 chr6A 95.833 48 2 0 327 374 1034091 1034044 1.590000e-10 78.7
17 TraesCS1B01G168900 chr6D 87.692 65 8 0 292 356 470631971 470632035 5.710000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G168900 chr1B 299973654 299978971 5317 True 2315.7 4896 100.000000 1 5318 4 chr1B.!!$R1 5317
1 TraesCS1B01G168900 chr1D 204294183 204298612 4429 True 2189.0 3179 94.539667 517 5318 3 chr1D.!!$R1 4801
2 TraesCS1B01G168900 chr1A 259993380 259998076 4696 True 1556.0 3031 93.361750 578 5231 4 chr1A.!!$R1 4653

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
26 27 0.029567 GAGTGGCGATCCGACTGTAG 59.970 60.0 4.12 0.00 35.04 2.74 F
91 92 0.034670 AGGTTGGAGCCTCATTGAGC 60.035 55.0 8.23 4.31 32.39 4.26 F
93 94 0.034670 GTTGGAGCCTCATTGAGCCT 60.035 55.0 8.23 2.04 0.00 4.58 F
810 821 0.038455 AGCCTCCGTCTGTACTCTGT 59.962 55.0 0.00 0.00 0.00 3.41 F
2156 2235 0.032615 ACAAAAGCACCCACCCTTCA 60.033 50.0 0.00 0.00 0.00 3.02 F
2157 2236 0.675633 CAAAAGCACCCACCCTTCAG 59.324 55.0 0.00 0.00 0.00 3.02 F
2590 2675 0.686441 ATGCATTGCACCATCAGCCT 60.686 50.0 14.66 0.00 43.04 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1707 1744 0.519961 AAACCCATTACGAGCAACGC 59.480 50.000 0.00 0.0 46.94 4.84 R
1874 1914 2.693074 AGCTTTGGGGTGTAACAACTTG 59.307 45.455 0.00 0.0 39.98 3.16 R
1883 1923 5.185056 GTGTTATAATTGAGCTTTGGGGTGT 59.815 40.000 0.00 0.0 0.00 4.16 R
2569 2652 0.174845 GCTGATGGTGCAATGCATGT 59.825 50.000 12.38 0.0 41.91 3.21 R
3519 3615 1.263217 CTAGCACACAACCGAAACACC 59.737 52.381 0.00 0.0 0.00 4.16 R
3526 3622 1.803334 TAAAGGCTAGCACACAACCG 58.197 50.000 18.24 0.0 0.00 4.44 R
4389 4496 1.223187 AACAAAGCTAACACGACGGG 58.777 50.000 0.00 0.0 0.00 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.490890 GGCTGTTGAGTGGCGATC 58.509 61.111 0.00 0.00 0.00 3.69
18 19 2.109126 GGCTGTTGAGTGGCGATCC 61.109 63.158 0.00 0.00 0.00 3.36
19 20 2.456119 GCTGTTGAGTGGCGATCCG 61.456 63.158 0.00 0.00 34.14 4.18
20 21 1.215382 CTGTTGAGTGGCGATCCGA 59.785 57.895 0.00 0.00 34.14 4.55
21 22 1.078759 CTGTTGAGTGGCGATCCGAC 61.079 60.000 0.00 0.00 34.27 4.79
22 23 1.215647 GTTGAGTGGCGATCCGACT 59.784 57.895 0.00 0.00 35.04 4.18
23 24 1.078759 GTTGAGTGGCGATCCGACTG 61.079 60.000 4.12 0.00 35.04 3.51
24 25 1.532604 TTGAGTGGCGATCCGACTGT 61.533 55.000 4.12 0.00 35.04 3.55
25 26 0.678684 TGAGTGGCGATCCGACTGTA 60.679 55.000 4.12 0.00 35.04 2.74
26 27 0.029567 GAGTGGCGATCCGACTGTAG 59.970 60.000 4.12 0.00 35.04 2.74
27 28 0.393944 AGTGGCGATCCGACTGTAGA 60.394 55.000 0.00 0.00 35.04 2.59
28 29 0.248539 GTGGCGATCCGACTGTAGAC 60.249 60.000 0.00 0.00 35.04 2.59
29 30 0.678684 TGGCGATCCGACTGTAGACA 60.679 55.000 0.00 0.00 35.04 3.41
30 31 0.248539 GGCGATCCGACTGTAGACAC 60.249 60.000 0.00 0.00 0.00 3.67
31 32 0.733729 GCGATCCGACTGTAGACACT 59.266 55.000 0.00 0.00 0.00 3.55
32 33 1.132643 GCGATCCGACTGTAGACACTT 59.867 52.381 0.00 0.00 0.00 3.16
33 34 2.786854 CGATCCGACTGTAGACACTTG 58.213 52.381 0.00 0.00 0.00 3.16
34 35 2.478031 CGATCCGACTGTAGACACTTGG 60.478 54.545 0.00 0.00 0.00 3.61
35 36 1.991121 TCCGACTGTAGACACTTGGT 58.009 50.000 0.00 0.00 0.00 3.67
44 45 2.900528 GACACTTGGTCCTGTGACG 58.099 57.895 18.15 0.00 42.73 4.35
45 46 0.600255 GACACTTGGTCCTGTGACGG 60.600 60.000 18.15 0.00 42.73 4.79
46 47 1.301716 CACTTGGTCCTGTGACGGG 60.302 63.158 3.42 3.42 42.73 5.28
47 48 1.764854 ACTTGGTCCTGTGACGGGT 60.765 57.895 10.78 0.00 42.73 5.28
48 49 0.470456 ACTTGGTCCTGTGACGGGTA 60.470 55.000 10.78 0.00 42.73 3.69
49 50 0.902531 CTTGGTCCTGTGACGGGTAT 59.097 55.000 10.78 0.00 42.73 2.73
50 51 0.899720 TTGGTCCTGTGACGGGTATC 59.100 55.000 10.78 2.73 42.73 2.24
51 52 0.974010 TGGTCCTGTGACGGGTATCC 60.974 60.000 10.78 11.81 42.73 2.59
52 53 1.683418 GGTCCTGTGACGGGTATCCC 61.683 65.000 10.78 3.15 42.73 3.85
65 66 3.544698 GGTATCCCCTCTGGTATCTCA 57.455 52.381 0.00 0.00 34.77 3.27
66 67 3.166679 GGTATCCCCTCTGGTATCTCAC 58.833 54.545 0.00 0.00 34.77 3.51
67 68 2.002505 ATCCCCTCTGGTATCTCACG 57.997 55.000 0.00 0.00 34.77 4.35
68 69 0.629596 TCCCCTCTGGTATCTCACGT 59.370 55.000 0.00 0.00 34.77 4.49
69 70 1.033574 CCCCTCTGGTATCTCACGTC 58.966 60.000 0.00 0.00 0.00 4.34
70 71 1.410365 CCCCTCTGGTATCTCACGTCT 60.410 57.143 0.00 0.00 0.00 4.18
71 72 2.379972 CCCTCTGGTATCTCACGTCTT 58.620 52.381 0.00 0.00 0.00 3.01
72 73 3.552875 CCCTCTGGTATCTCACGTCTTA 58.447 50.000 0.00 0.00 0.00 2.10
73 74 3.566322 CCCTCTGGTATCTCACGTCTTAG 59.434 52.174 0.00 0.00 0.00 2.18
74 75 3.566322 CCTCTGGTATCTCACGTCTTAGG 59.434 52.174 0.00 0.00 0.00 2.69
75 76 4.200874 CTCTGGTATCTCACGTCTTAGGT 58.799 47.826 0.00 0.00 0.00 3.08
76 77 4.597004 TCTGGTATCTCACGTCTTAGGTT 58.403 43.478 0.00 0.00 0.00 3.50
77 78 4.398358 TCTGGTATCTCACGTCTTAGGTTG 59.602 45.833 0.00 0.00 0.00 3.77
78 79 3.446161 TGGTATCTCACGTCTTAGGTTGG 59.554 47.826 0.00 0.00 0.00 3.77
79 80 3.698040 GGTATCTCACGTCTTAGGTTGGA 59.302 47.826 0.00 0.00 0.00 3.53
80 81 4.202030 GGTATCTCACGTCTTAGGTTGGAG 60.202 50.000 0.00 0.00 0.00 3.86
81 82 1.544691 TCTCACGTCTTAGGTTGGAGC 59.455 52.381 0.00 0.00 0.00 4.70
82 83 0.606604 TCACGTCTTAGGTTGGAGCC 59.393 55.000 0.00 0.00 0.00 4.70
83 84 0.608640 CACGTCTTAGGTTGGAGCCT 59.391 55.000 0.00 0.00 42.43 4.58
84 85 0.896226 ACGTCTTAGGTTGGAGCCTC 59.104 55.000 0.00 0.00 39.94 4.70
85 86 0.895530 CGTCTTAGGTTGGAGCCTCA 59.104 55.000 0.00 0.00 39.94 3.86
86 87 1.482593 CGTCTTAGGTTGGAGCCTCAT 59.517 52.381 0.00 0.00 39.94 2.90
87 88 2.093447 CGTCTTAGGTTGGAGCCTCATT 60.093 50.000 0.00 0.00 39.94 2.57
88 89 3.274288 GTCTTAGGTTGGAGCCTCATTG 58.726 50.000 0.00 0.00 39.94 2.82
89 90 3.055094 GTCTTAGGTTGGAGCCTCATTGA 60.055 47.826 0.00 0.00 39.94 2.57
90 91 3.198635 TCTTAGGTTGGAGCCTCATTGAG 59.801 47.826 6.70 6.70 39.94 3.02
91 92 0.034670 AGGTTGGAGCCTCATTGAGC 60.035 55.000 8.23 4.31 32.39 4.26
92 93 1.034292 GGTTGGAGCCTCATTGAGCC 61.034 60.000 8.23 5.14 0.00 4.70
93 94 0.034670 GTTGGAGCCTCATTGAGCCT 60.035 55.000 8.23 2.04 0.00 4.58
94 95 1.210478 GTTGGAGCCTCATTGAGCCTA 59.790 52.381 8.23 0.00 0.00 3.93
95 96 1.126488 TGGAGCCTCATTGAGCCTAG 58.874 55.000 8.23 0.00 0.00 3.02
96 97 0.250252 GGAGCCTCATTGAGCCTAGC 60.250 60.000 8.23 6.36 0.00 3.42
97 98 0.758123 GAGCCTCATTGAGCCTAGCT 59.242 55.000 13.00 13.00 43.88 3.32
98 99 0.469070 AGCCTCATTGAGCCTAGCTG 59.531 55.000 12.53 0.00 39.88 4.24
99 100 0.467384 GCCTCATTGAGCCTAGCTGA 59.533 55.000 8.23 0.00 39.88 4.26
100 101 1.072015 GCCTCATTGAGCCTAGCTGAT 59.928 52.381 8.23 0.00 39.88 2.90
101 102 2.301296 GCCTCATTGAGCCTAGCTGATA 59.699 50.000 8.23 0.00 39.88 2.15
102 103 3.864160 GCCTCATTGAGCCTAGCTGATAC 60.864 52.174 8.23 0.00 39.88 2.24
103 104 3.577848 CCTCATTGAGCCTAGCTGATACT 59.422 47.826 8.23 0.00 39.88 2.12
104 105 4.769488 CCTCATTGAGCCTAGCTGATACTA 59.231 45.833 8.23 0.00 39.88 1.82
105 106 5.105797 CCTCATTGAGCCTAGCTGATACTAG 60.106 48.000 8.23 0.00 39.88 2.57
106 107 4.219507 TCATTGAGCCTAGCTGATACTAGC 59.780 45.833 0.00 0.00 39.88 3.42
115 116 3.467374 GCTGATACTAGCTCTTTGGCT 57.533 47.619 0.00 0.00 45.29 4.75
116 117 3.389221 GCTGATACTAGCTCTTTGGCTC 58.611 50.000 0.00 0.00 42.97 4.70
117 118 3.181471 GCTGATACTAGCTCTTTGGCTCA 60.181 47.826 0.00 0.00 42.97 4.26
118 119 4.502950 GCTGATACTAGCTCTTTGGCTCAT 60.503 45.833 0.00 0.00 42.97 2.90
119 120 5.609423 CTGATACTAGCTCTTTGGCTCATT 58.391 41.667 0.00 0.00 42.97 2.57
120 121 5.363101 TGATACTAGCTCTTTGGCTCATTG 58.637 41.667 0.00 0.00 42.97 2.82
121 122 3.710209 ACTAGCTCTTTGGCTCATTGT 57.290 42.857 0.00 0.00 42.97 2.71
122 123 4.826274 ACTAGCTCTTTGGCTCATTGTA 57.174 40.909 0.00 0.00 42.97 2.41
123 124 5.365021 ACTAGCTCTTTGGCTCATTGTAT 57.635 39.130 0.00 0.00 42.97 2.29
124 125 5.749462 ACTAGCTCTTTGGCTCATTGTATT 58.251 37.500 0.00 0.00 42.97 1.89
125 126 5.819901 ACTAGCTCTTTGGCTCATTGTATTC 59.180 40.000 0.00 0.00 42.97 1.75
126 127 4.853007 AGCTCTTTGGCTCATTGTATTCT 58.147 39.130 0.00 0.00 38.24 2.40
127 128 5.994250 AGCTCTTTGGCTCATTGTATTCTA 58.006 37.500 0.00 0.00 38.24 2.10
128 129 6.054295 AGCTCTTTGGCTCATTGTATTCTAG 58.946 40.000 0.00 0.00 38.24 2.43
129 130 6.051717 GCTCTTTGGCTCATTGTATTCTAGA 58.948 40.000 0.00 0.00 0.00 2.43
130 131 6.018343 GCTCTTTGGCTCATTGTATTCTAGAC 60.018 42.308 0.00 0.00 0.00 2.59
131 132 6.349300 TCTTTGGCTCATTGTATTCTAGACC 58.651 40.000 0.00 0.00 0.00 3.85
132 133 4.322080 TGGCTCATTGTATTCTAGACCG 57.678 45.455 0.00 0.00 0.00 4.79
133 134 3.060602 GGCTCATTGTATTCTAGACCGC 58.939 50.000 0.00 0.00 0.00 5.68
134 135 3.492656 GGCTCATTGTATTCTAGACCGCA 60.493 47.826 0.00 0.00 0.00 5.69
135 136 4.310769 GCTCATTGTATTCTAGACCGCAT 58.689 43.478 0.00 0.00 0.00 4.73
136 137 4.752101 GCTCATTGTATTCTAGACCGCATT 59.248 41.667 0.00 0.00 0.00 3.56
137 138 5.107298 GCTCATTGTATTCTAGACCGCATTC 60.107 44.000 0.00 0.00 0.00 2.67
138 139 5.297547 TCATTGTATTCTAGACCGCATTCC 58.702 41.667 0.00 0.00 0.00 3.01
139 140 3.364889 TGTATTCTAGACCGCATTCCG 57.635 47.619 0.00 0.00 0.00 4.30
140 141 2.691526 TGTATTCTAGACCGCATTCCGT 59.308 45.455 0.00 0.00 34.38 4.69
141 142 2.510768 ATTCTAGACCGCATTCCGTC 57.489 50.000 0.00 0.00 34.38 4.79
142 143 0.458669 TTCTAGACCGCATTCCGTCC 59.541 55.000 0.00 0.00 34.38 4.79
143 144 0.395311 TCTAGACCGCATTCCGTCCT 60.395 55.000 0.00 0.00 34.38 3.85
144 145 0.460311 CTAGACCGCATTCCGTCCTT 59.540 55.000 0.00 0.00 34.38 3.36
145 146 1.679680 CTAGACCGCATTCCGTCCTTA 59.320 52.381 0.00 0.00 34.38 2.69
146 147 0.175073 AGACCGCATTCCGTCCTTAC 59.825 55.000 0.00 0.00 34.38 2.34
164 165 9.882996 CGTCCTTACGTTCAACTATATGTATAA 57.117 33.333 0.00 0.00 44.21 0.98
166 167 9.882996 TCCTTACGTTCAACTATATGTATAACG 57.117 33.333 0.00 0.00 44.89 3.18
167 168 8.633408 CCTTACGTTCAACTATATGTATAACGC 58.367 37.037 0.00 0.00 44.05 4.84
168 169 6.998258 ACGTTCAACTATATGTATAACGCC 57.002 37.500 16.12 0.00 44.05 5.68
169 170 5.626543 ACGTTCAACTATATGTATAACGCCG 59.373 40.000 16.12 0.00 44.05 6.46
170 171 5.626543 CGTTCAACTATATGTATAACGCCGT 59.373 40.000 0.00 0.00 38.83 5.68
171 172 6.398205 CGTTCAACTATATGTATAACGCCGTG 60.398 42.308 0.00 0.00 38.83 4.94
172 173 6.316440 TCAACTATATGTATAACGCCGTGA 57.684 37.500 0.00 0.00 0.00 4.35
173 174 6.376177 TCAACTATATGTATAACGCCGTGAG 58.624 40.000 0.00 0.00 0.00 3.51
174 175 4.730657 ACTATATGTATAACGCCGTGAGC 58.269 43.478 0.00 0.00 38.52 4.26
175 176 3.653539 ATATGTATAACGCCGTGAGCA 57.346 42.857 0.00 0.00 44.04 4.26
176 177 1.852942 ATGTATAACGCCGTGAGCAG 58.147 50.000 0.00 0.00 44.04 4.24
177 178 0.804544 TGTATAACGCCGTGAGCAGC 60.805 55.000 0.00 0.00 44.04 5.25
178 179 1.227147 TATAACGCCGTGAGCAGCC 60.227 57.895 0.00 0.00 44.04 4.85
179 180 2.638330 TATAACGCCGTGAGCAGCCC 62.638 60.000 0.00 0.00 44.04 5.19
183 184 4.537433 GCCGTGAGCAGCCCCTAG 62.537 72.222 0.00 0.00 42.97 3.02
184 185 3.077556 CCGTGAGCAGCCCCTAGT 61.078 66.667 0.00 0.00 0.00 2.57
185 186 2.185350 CGTGAGCAGCCCCTAGTG 59.815 66.667 0.00 0.00 0.00 2.74
186 187 2.351244 CGTGAGCAGCCCCTAGTGA 61.351 63.158 0.00 0.00 0.00 3.41
187 188 1.519719 GTGAGCAGCCCCTAGTGAG 59.480 63.158 0.00 0.00 0.00 3.51
188 189 2.362369 TGAGCAGCCCCTAGTGAGC 61.362 63.158 0.00 0.00 0.00 4.26
189 190 2.284921 AGCAGCCCCTAGTGAGCA 60.285 61.111 0.00 0.00 0.00 4.26
190 191 2.124942 GCAGCCCCTAGTGAGCAC 60.125 66.667 0.00 0.00 0.00 4.40
191 192 2.664081 GCAGCCCCTAGTGAGCACT 61.664 63.158 8.35 8.35 45.02 4.40
192 193 1.519719 CAGCCCCTAGTGAGCACTC 59.480 63.158 6.38 0.00 42.54 3.51
193 194 2.055042 AGCCCCTAGTGAGCACTCG 61.055 63.158 6.38 0.62 42.54 4.18
194 195 2.352032 GCCCCTAGTGAGCACTCGT 61.352 63.158 6.38 0.00 42.54 4.18
195 196 1.035932 GCCCCTAGTGAGCACTCGTA 61.036 60.000 6.38 0.00 42.54 3.43
196 197 1.025812 CCCCTAGTGAGCACTCGTAG 58.974 60.000 6.38 0.00 42.54 3.51
197 198 1.682394 CCCCTAGTGAGCACTCGTAGT 60.682 57.143 6.38 0.00 42.54 2.73
236 237 9.646522 AATAAATAAGCATCCATAGTGTTTCCT 57.353 29.630 0.00 0.00 0.00 3.36
238 239 8.682936 AAATAAGCATCCATAGTGTTTCCTAG 57.317 34.615 0.00 0.00 0.00 3.02
239 240 5.957771 AAGCATCCATAGTGTTTCCTAGA 57.042 39.130 0.00 0.00 0.00 2.43
240 241 5.957771 AGCATCCATAGTGTTTCCTAGAA 57.042 39.130 0.00 0.00 0.00 2.10
241 242 5.923204 AGCATCCATAGTGTTTCCTAGAAG 58.077 41.667 0.00 0.00 0.00 2.85
242 243 4.513318 GCATCCATAGTGTTTCCTAGAAGC 59.487 45.833 0.00 0.00 0.00 3.86
243 244 5.674525 CATCCATAGTGTTTCCTAGAAGCA 58.325 41.667 0.00 0.00 0.00 3.91
244 245 5.957771 TCCATAGTGTTTCCTAGAAGCAT 57.042 39.130 0.00 0.00 0.00 3.79
245 246 5.918608 TCCATAGTGTTTCCTAGAAGCATC 58.081 41.667 0.00 0.00 0.00 3.91
246 247 5.059833 CCATAGTGTTTCCTAGAAGCATCC 58.940 45.833 0.00 0.00 0.00 3.51
247 248 5.396772 CCATAGTGTTTCCTAGAAGCATCCA 60.397 44.000 0.00 0.00 0.00 3.41
248 249 4.851639 AGTGTTTCCTAGAAGCATCCAT 57.148 40.909 0.00 0.00 0.00 3.41
249 250 5.957771 AGTGTTTCCTAGAAGCATCCATA 57.042 39.130 0.00 0.00 0.00 2.74
250 251 5.923204 AGTGTTTCCTAGAAGCATCCATAG 58.077 41.667 0.00 0.00 0.00 2.23
251 252 5.426833 AGTGTTTCCTAGAAGCATCCATAGT 59.573 40.000 0.00 0.00 0.00 2.12
252 253 5.525378 GTGTTTCCTAGAAGCATCCATAGTG 59.475 44.000 0.00 0.00 0.00 2.74
253 254 5.189736 TGTTTCCTAGAAGCATCCATAGTGT 59.810 40.000 0.00 0.00 0.00 3.55
254 255 5.957771 TTCCTAGAAGCATCCATAGTGTT 57.042 39.130 0.00 0.00 0.00 3.32
255 256 5.957771 TCCTAGAAGCATCCATAGTGTTT 57.042 39.130 0.00 0.00 0.00 2.83
256 257 5.918608 TCCTAGAAGCATCCATAGTGTTTC 58.081 41.667 0.00 0.00 37.15 2.78
257 258 5.059833 CCTAGAAGCATCCATAGTGTTTCC 58.940 45.833 0.00 0.00 37.47 3.13
258 259 4.851639 AGAAGCATCCATAGTGTTTCCT 57.148 40.909 0.00 0.00 37.47 3.36
259 260 5.957771 AGAAGCATCCATAGTGTTTCCTA 57.042 39.130 0.00 0.00 37.47 2.94
260 261 5.923204 AGAAGCATCCATAGTGTTTCCTAG 58.077 41.667 0.00 0.00 37.47 3.02
261 262 5.663106 AGAAGCATCCATAGTGTTTCCTAGA 59.337 40.000 0.00 0.00 37.47 2.43
262 263 5.957771 AGCATCCATAGTGTTTCCTAGAA 57.042 39.130 0.00 0.00 0.00 2.10
263 264 5.923204 AGCATCCATAGTGTTTCCTAGAAG 58.077 41.667 0.00 0.00 0.00 2.85
264 265 5.426833 AGCATCCATAGTGTTTCCTAGAAGT 59.573 40.000 0.00 0.00 0.00 3.01
265 266 6.611642 AGCATCCATAGTGTTTCCTAGAAGTA 59.388 38.462 0.00 0.00 0.00 2.24
266 267 6.702282 GCATCCATAGTGTTTCCTAGAAGTAC 59.298 42.308 0.00 0.00 0.00 2.73
267 268 6.786967 TCCATAGTGTTTCCTAGAAGTACC 57.213 41.667 0.00 0.00 0.00 3.34
268 269 6.258354 TCCATAGTGTTTCCTAGAAGTACCA 58.742 40.000 0.00 0.00 0.00 3.25
269 270 6.154021 TCCATAGTGTTTCCTAGAAGTACCAC 59.846 42.308 0.00 0.00 0.00 4.16
270 271 4.886496 AGTGTTTCCTAGAAGTACCACC 57.114 45.455 0.00 0.00 0.00 4.61
271 272 4.228824 AGTGTTTCCTAGAAGTACCACCA 58.771 43.478 0.00 0.00 0.00 4.17
272 273 4.283722 AGTGTTTCCTAGAAGTACCACCAG 59.716 45.833 0.00 0.00 0.00 4.00
273 274 4.040095 GTGTTTCCTAGAAGTACCACCAGT 59.960 45.833 0.00 0.00 0.00 4.00
274 275 5.244626 GTGTTTCCTAGAAGTACCACCAGTA 59.755 44.000 0.00 0.00 0.00 2.74
283 284 2.436417 GTACCACCAGTACCGAGTACA 58.564 52.381 14.11 0.00 44.85 2.90
284 285 1.251251 ACCACCAGTACCGAGTACAC 58.749 55.000 14.11 0.00 41.03 2.90
285 286 1.202976 ACCACCAGTACCGAGTACACT 60.203 52.381 14.11 0.00 41.03 3.55
286 287 1.471684 CCACCAGTACCGAGTACACTC 59.528 57.143 14.11 0.00 41.03 3.51
287 288 2.434428 CACCAGTACCGAGTACACTCT 58.566 52.381 14.11 0.00 41.03 3.24
288 289 2.419324 CACCAGTACCGAGTACACTCTC 59.581 54.545 14.11 0.00 41.03 3.20
289 290 2.015587 CCAGTACCGAGTACACTCTCC 58.984 57.143 14.11 0.00 41.03 3.71
290 291 1.664659 CAGTACCGAGTACACTCTCCG 59.335 57.143 14.11 0.00 41.03 4.63
291 292 1.012841 GTACCGAGTACACTCTCCGG 58.987 60.000 7.72 0.00 40.75 5.14
292 293 0.615331 TACCGAGTACACTCTCCGGT 59.385 55.000 15.32 15.32 40.75 5.28
293 294 0.676151 ACCGAGTACACTCTCCGGTC 60.676 60.000 0.00 0.00 40.75 4.79
294 295 0.675837 CCGAGTACACTCTCCGGTCA 60.676 60.000 0.00 0.00 40.75 4.02
295 296 1.380524 CGAGTACACTCTCCGGTCAT 58.619 55.000 0.00 0.00 40.75 3.06
296 297 1.743958 CGAGTACACTCTCCGGTCATT 59.256 52.381 0.00 0.00 40.75 2.57
297 298 2.163815 CGAGTACACTCTCCGGTCATTT 59.836 50.000 0.00 0.00 40.75 2.32
298 299 3.731264 CGAGTACACTCTCCGGTCATTTC 60.731 52.174 0.00 0.00 40.75 2.17
299 300 3.432378 AGTACACTCTCCGGTCATTTCT 58.568 45.455 0.00 0.00 0.00 2.52
300 301 4.597004 AGTACACTCTCCGGTCATTTCTA 58.403 43.478 0.00 0.00 0.00 2.10
301 302 3.870633 ACACTCTCCGGTCATTTCTAC 57.129 47.619 0.00 0.00 0.00 2.59
302 303 3.432378 ACACTCTCCGGTCATTTCTACT 58.568 45.455 0.00 0.00 0.00 2.57
303 304 3.444388 ACACTCTCCGGTCATTTCTACTC 59.556 47.826 0.00 0.00 0.00 2.59
304 305 3.697045 CACTCTCCGGTCATTTCTACTCT 59.303 47.826 0.00 0.00 0.00 3.24
305 306 3.697045 ACTCTCCGGTCATTTCTACTCTG 59.303 47.826 0.00 0.00 0.00 3.35
306 307 3.948473 CTCTCCGGTCATTTCTACTCTGA 59.052 47.826 0.00 0.00 0.00 3.27
307 308 4.341487 TCTCCGGTCATTTCTACTCTGAA 58.659 43.478 0.00 0.00 0.00 3.02
308 309 4.956700 TCTCCGGTCATTTCTACTCTGAAT 59.043 41.667 0.00 0.00 0.00 2.57
309 310 6.127101 TCTCCGGTCATTTCTACTCTGAATA 58.873 40.000 0.00 0.00 0.00 1.75
310 311 6.778069 TCTCCGGTCATTTCTACTCTGAATAT 59.222 38.462 0.00 0.00 0.00 1.28
311 312 7.942894 TCTCCGGTCATTTCTACTCTGAATATA 59.057 37.037 0.00 0.00 0.00 0.86
312 313 8.473358 TCCGGTCATTTCTACTCTGAATATAA 57.527 34.615 0.00 0.00 0.00 0.98
313 314 8.577296 TCCGGTCATTTCTACTCTGAATATAAG 58.423 37.037 0.00 0.00 0.00 1.73
314 315 8.577296 CCGGTCATTTCTACTCTGAATATAAGA 58.423 37.037 0.00 0.00 0.00 2.10
345 346 9.504710 TTCGAATTCAAACTTCGTAAAATTTGA 57.495 25.926 6.22 0.00 44.37 2.69
346 347 9.672086 TCGAATTCAAACTTCGTAAAATTTGAT 57.328 25.926 6.22 0.00 44.37 2.57
347 348 9.922951 CGAATTCAAACTTCGTAAAATTTGATC 57.077 29.630 6.22 0.00 39.94 2.92
396 397 8.639761 ACATATGTAATACTCTGAAGTACCACC 58.360 37.037 6.56 0.00 40.74 4.61
397 398 8.638873 CATATGTAATACTCTGAAGTACCACCA 58.361 37.037 0.00 0.00 40.74 4.17
398 399 6.525578 TGTAATACTCTGAAGTACCACCAG 57.474 41.667 0.00 0.00 40.74 4.00
399 400 6.014647 TGTAATACTCTGAAGTACCACCAGT 58.985 40.000 6.64 0.00 40.74 4.00
400 401 5.407407 AATACTCTGAAGTACCACCAGTG 57.593 43.478 6.64 6.86 40.74 3.66
401 402 1.344763 ACTCTGAAGTACCACCAGTGC 59.655 52.381 6.64 0.00 32.59 4.40
402 403 0.317160 TCTGAAGTACCACCAGTGCG 59.683 55.000 6.64 0.00 35.99 5.34
403 404 0.670546 CTGAAGTACCACCAGTGCGG 60.671 60.000 0.00 0.00 42.50 5.69
404 405 1.116536 TGAAGTACCACCAGTGCGGA 61.117 55.000 3.96 0.00 38.63 5.54
405 406 0.389948 GAAGTACCACCAGTGCGGAG 60.390 60.000 3.96 0.00 38.63 4.63
406 407 1.119574 AAGTACCACCAGTGCGGAGT 61.120 55.000 3.96 0.00 38.63 3.85
407 408 0.251474 AGTACCACCAGTGCGGAGTA 60.251 55.000 3.96 0.00 38.63 2.59
408 409 0.108945 GTACCACCAGTGCGGAGTAC 60.109 60.000 3.96 0.62 45.64 2.73
504 505 8.856490 ACTTTACAAAGTTTAACTTCATGCAG 57.144 30.769 10.98 7.56 46.52 4.41
505 506 8.682710 ACTTTACAAAGTTTAACTTCATGCAGA 58.317 29.630 10.98 0.00 46.52 4.26
506 507 9.683069 CTTTACAAAGTTTAACTTCATGCAGAT 57.317 29.630 10.98 0.00 37.47 2.90
507 508 9.677567 TTTACAAAGTTTAACTTCATGCAGATC 57.322 29.630 10.98 0.00 37.47 2.75
508 509 7.516198 ACAAAGTTTAACTTCATGCAGATCT 57.484 32.000 10.98 0.00 37.47 2.75
509 510 7.945134 ACAAAGTTTAACTTCATGCAGATCTT 58.055 30.769 10.98 0.00 37.47 2.40
510 511 9.066892 ACAAAGTTTAACTTCATGCAGATCTTA 57.933 29.630 10.98 0.00 37.47 2.10
527 528 9.787532 GCAGATCTTATATGCAAAGTAAACAAA 57.212 29.630 0.00 0.00 46.20 2.83
537 538 4.321974 GCAAAGTAAACAAAGGATGGGAGG 60.322 45.833 0.00 0.00 0.00 4.30
540 541 3.660669 AGTAAACAAAGGATGGGAGGGAA 59.339 43.478 0.00 0.00 0.00 3.97
541 542 3.852858 AAACAAAGGATGGGAGGGAAT 57.147 42.857 0.00 0.00 0.00 3.01
542 543 4.965283 AAACAAAGGATGGGAGGGAATA 57.035 40.909 0.00 0.00 0.00 1.75
544 545 4.731313 ACAAAGGATGGGAGGGAATATC 57.269 45.455 0.00 0.00 0.00 1.63
545 546 4.054369 ACAAAGGATGGGAGGGAATATCA 58.946 43.478 0.00 0.00 0.00 2.15
547 548 4.942363 AAGGATGGGAGGGAATATCATG 57.058 45.455 0.00 0.00 0.00 3.07
548 549 2.579860 AGGATGGGAGGGAATATCATGC 59.420 50.000 0.00 0.00 0.00 4.06
549 550 2.579860 GGATGGGAGGGAATATCATGCT 59.420 50.000 0.00 0.00 0.00 3.79
571 574 0.838987 AACACCCGTCACTACCCCAT 60.839 55.000 0.00 0.00 0.00 4.00
576 579 0.459585 CCGTCACTACCCCATCAACG 60.460 60.000 0.00 0.00 0.00 4.10
626 630 1.066143 AGGCCATCCTAAACTGTCACG 60.066 52.381 5.01 0.00 42.06 4.35
629 633 2.893637 CCATCCTAAACTGTCACGGAG 58.106 52.381 0.00 0.00 0.00 4.63
652 656 2.156098 TCCTGCGACCCACATAAAAAC 58.844 47.619 0.00 0.00 0.00 2.43
687 697 5.915628 AGGAAAAATAGGTCCCAATTCCTT 58.084 37.500 0.00 0.00 41.71 3.36
693 703 2.942905 AGGTCCCAATTCCTTTCCCTA 58.057 47.619 0.00 0.00 0.00 3.53
694 704 2.853077 AGGTCCCAATTCCTTTCCCTAG 59.147 50.000 0.00 0.00 0.00 3.02
695 705 2.581246 GGTCCCAATTCCTTTCCCTAGT 59.419 50.000 0.00 0.00 0.00 2.57
696 706 3.784202 GGTCCCAATTCCTTTCCCTAGTA 59.216 47.826 0.00 0.00 0.00 1.82
766 777 4.150454 CCGCCCCTCCTCTCCTCT 62.150 72.222 0.00 0.00 0.00 3.69
767 778 2.520741 CGCCCCTCCTCTCCTCTC 60.521 72.222 0.00 0.00 0.00 3.20
768 779 3.024217 GCCCCTCCTCTCCTCTCT 58.976 66.667 0.00 0.00 0.00 3.10
805 816 1.472188 ACCTAAGCCTCCGTCTGTAC 58.528 55.000 0.00 0.00 0.00 2.90
806 817 1.005687 ACCTAAGCCTCCGTCTGTACT 59.994 52.381 0.00 0.00 0.00 2.73
807 818 1.677052 CCTAAGCCTCCGTCTGTACTC 59.323 57.143 0.00 0.00 0.00 2.59
808 819 2.645802 CTAAGCCTCCGTCTGTACTCT 58.354 52.381 0.00 0.00 0.00 3.24
809 820 1.178276 AAGCCTCCGTCTGTACTCTG 58.822 55.000 0.00 0.00 0.00 3.35
810 821 0.038455 AGCCTCCGTCTGTACTCTGT 59.962 55.000 0.00 0.00 0.00 3.41
811 822 1.281287 AGCCTCCGTCTGTACTCTGTA 59.719 52.381 0.00 0.00 0.00 2.74
835 846 2.453497 AACACCCACCCATCCCCA 60.453 61.111 0.00 0.00 0.00 4.96
955 975 1.776034 GCCTCGCTTAAATCCGCCAG 61.776 60.000 0.00 0.00 0.00 4.85
1272 1294 2.623915 CGACGAGGTGTCCTTCGGT 61.624 63.158 0.00 1.98 45.23 4.69
1341 1366 1.361793 CCGGCGATTTTCTTCGGTTA 58.638 50.000 9.30 0.00 39.49 2.85
1342 1367 1.937899 CCGGCGATTTTCTTCGGTTAT 59.062 47.619 9.30 0.00 39.49 1.89
1457 1482 1.786928 CGCTTCGGCTCGTTTCATTTC 60.787 52.381 0.00 0.00 39.13 2.17
1543 1568 8.691797 TGCTATTTTCCCCAATATCTTTGTTAC 58.308 33.333 0.00 0.00 0.00 2.50
1575 1600 6.710295 ACTTTGCTGTTTATTGGGGATTTTTC 59.290 34.615 0.00 0.00 0.00 2.29
1577 1602 4.180817 GCTGTTTATTGGGGATTTTTCCG 58.819 43.478 0.00 0.00 0.00 4.30
1578 1603 4.322424 GCTGTTTATTGGGGATTTTTCCGT 60.322 41.667 0.00 0.00 0.00 4.69
1596 1624 2.917971 CCGTCTAACTCTTCTTTCGCTG 59.082 50.000 0.00 0.00 0.00 5.18
1614 1642 3.866496 GCTGTTTGAGCGATGTAATAGC 58.134 45.455 0.00 0.00 45.98 2.97
1615 1643 3.303395 GCTGTTTGAGCGATGTAATAGCC 60.303 47.826 2.86 0.00 46.90 3.93
1660 1689 6.072064 TCGGTGTGTTTTTCCTTGTTTCTTTA 60.072 34.615 0.00 0.00 0.00 1.85
1661 1690 6.586844 CGGTGTGTTTTTCCTTGTTTCTTTAA 59.413 34.615 0.00 0.00 0.00 1.52
1675 1704 9.261180 CTTGTTTCTTTAATCTAGTGTGAGTGA 57.739 33.333 0.00 0.00 0.00 3.41
1678 1707 9.209175 GTTTCTTTAATCTAGTGTGAGTGATGT 57.791 33.333 0.00 0.00 0.00 3.06
1679 1708 8.988064 TTCTTTAATCTAGTGTGAGTGATGTC 57.012 34.615 0.00 0.00 0.00 3.06
1707 1744 3.019564 CTGTTAATTTCCTGGCCCTCTG 58.980 50.000 0.00 0.00 0.00 3.35
1715 1752 4.704833 TGGCCCTCTGCGTTGCTC 62.705 66.667 0.00 0.00 42.61 4.26
1837 1877 5.721000 TGGTGGCCAATTTATCTCAAGAAAT 59.279 36.000 7.24 0.00 0.00 2.17
1874 1914 9.445786 TTTCTATGTTTCGATTTTGTTCAAGTC 57.554 29.630 0.00 0.00 0.00 3.01
1883 1923 7.753659 TCGATTTTGTTCAAGTCAAGTTGTTA 58.246 30.769 2.11 0.00 0.00 2.41
1976 2025 1.339727 CCCCCTTTTCGTTAGTGGGAG 60.340 57.143 0.00 0.00 40.23 4.30
2018 2067 3.084786 CCTCCTGTTCTTTCCACCATTC 58.915 50.000 0.00 0.00 0.00 2.67
2156 2235 0.032615 ACAAAAGCACCCACCCTTCA 60.033 50.000 0.00 0.00 0.00 3.02
2157 2236 0.675633 CAAAAGCACCCACCCTTCAG 59.324 55.000 0.00 0.00 0.00 3.02
2279 2361 1.257055 ATGGCCCCAAATTGTCACCG 61.257 55.000 0.00 0.00 0.00 4.94
2290 2372 4.799564 AATTGTCACCGCCATTAAATGT 57.200 36.364 0.00 0.00 0.00 2.71
2428 2511 5.571277 CAGTTTTTGGCCAGAAACATTTTG 58.429 37.500 38.51 28.43 37.72 2.44
2433 2516 4.533919 TGGCCAGAAACATTTTGGTATG 57.466 40.909 0.00 0.00 34.43 2.39
2449 2532 3.774766 TGGTATGTGTCAGGAGCTAACAT 59.225 43.478 0.00 0.00 35.70 2.71
2504 2587 1.605710 GTAGGTACGCATCTTCGCCTA 59.394 52.381 0.00 0.00 0.00 3.93
2566 2649 4.075763 GCTATGATAGCGCCATTTCTTG 57.924 45.455 8.90 0.00 42.62 3.02
2567 2650 3.669023 GCTATGATAGCGCCATTTCTTGC 60.669 47.826 8.90 0.00 42.62 4.01
2568 2651 2.042686 TGATAGCGCCATTTCTTGCT 57.957 45.000 2.29 0.00 41.32 3.91
2569 2652 3.192541 TGATAGCGCCATTTCTTGCTA 57.807 42.857 2.29 0.00 43.40 3.49
2570 2653 2.872245 TGATAGCGCCATTTCTTGCTAC 59.128 45.455 2.29 0.00 42.19 3.58
2590 2675 0.686441 ATGCATTGCACCATCAGCCT 60.686 50.000 14.66 0.00 43.04 4.58
3068 3153 2.123640 AGGGAGCGAGGGAGTAGC 60.124 66.667 0.00 0.00 0.00 3.58
3153 3247 1.153706 GATGGCATGCACCAACTGC 60.154 57.895 21.36 0.00 44.65 4.40
3246 3340 1.617536 TCTGCATTCCTGGGCTCCT 60.618 57.895 0.00 0.00 0.00 3.69
3374 3470 1.034838 GTGTGTTGTTGGGCCACTGA 61.035 55.000 5.23 0.00 0.00 3.41
3475 3571 5.791336 ACTCATGTGACACTGAGAGTTTA 57.209 39.130 27.43 1.56 41.13 2.01
3519 3615 1.055040 TTTTGTTTCCCATGGGCCTG 58.945 50.000 27.41 2.09 34.68 4.85
3526 3622 1.984026 CCCATGGGCCTGGTGTTTC 60.984 63.158 20.41 0.00 34.23 2.78
3578 3674 6.560003 TGAGATAGATTGAAGGGCTGTTTA 57.440 37.500 0.00 0.00 0.00 2.01
4085 4192 5.601662 TGTTTGGTTCTCTCAGTCAGTTAG 58.398 41.667 0.00 0.00 0.00 2.34
4102 4209 9.569122 AGTCAGTTAGCCTTGTCTAATTAAAAA 57.431 29.630 0.00 0.00 31.92 1.94
4179 4286 5.066634 TGTGGTTTTGACACGTGATATGTTT 59.933 36.000 25.01 0.00 41.64 2.83
4348 4455 1.834263 GGAAGGAGAGCACCATGTACT 59.166 52.381 0.00 0.00 0.00 2.73
4380 4487 0.244450 CCACCTTAGCGTCGTGGTAA 59.756 55.000 7.02 3.00 41.80 2.85
4743 4855 1.238439 ATGTGAAAAGGCTGGTGACG 58.762 50.000 0.00 0.00 0.00 4.35
4744 4856 0.817634 TGTGAAAAGGCTGGTGACGG 60.818 55.000 0.00 0.00 40.79 4.79
4827 4950 2.478370 CCTGTGTGCCATTATTGCTTCG 60.478 50.000 0.00 0.00 0.00 3.79
4835 4958 4.114794 GCCATTATTGCTTCGATGCTTTT 58.885 39.130 22.11 10.57 0.00 2.27
4918 5045 4.148128 ACATGAGCCTGGATTCTACTTG 57.852 45.455 0.00 0.00 0.00 3.16
4983 5578 6.016610 GTGTGATACAATGTGTTTTAGTGGGT 60.017 38.462 0.00 0.00 0.00 4.51
5003 5598 1.881973 TGATCCTTTCACTGTGCAAGC 59.118 47.619 13.64 2.76 0.00 4.01
5004 5599 2.157738 GATCCTTTCACTGTGCAAGCT 58.842 47.619 13.64 4.36 0.00 3.74
5005 5600 1.311859 TCCTTTCACTGTGCAAGCTG 58.688 50.000 13.64 3.03 0.00 4.24
5006 5601 0.318445 CCTTTCACTGTGCAAGCTGC 60.318 55.000 13.64 0.00 45.29 5.25
5007 5602 0.318445 CTTTCACTGTGCAAGCTGCC 60.318 55.000 7.23 0.00 44.23 4.85
5008 5603 1.036481 TTTCACTGTGCAAGCTGCCA 61.036 50.000 2.12 0.00 44.23 4.92
5009 5604 1.727511 TTCACTGTGCAAGCTGCCAC 61.728 55.000 2.12 9.44 44.23 5.01
5010 5605 2.124193 ACTGTGCAAGCTGCCACA 60.124 55.556 16.16 16.16 44.23 4.17
5011 5606 2.333938 CTGTGCAAGCTGCCACAC 59.666 61.111 13.85 7.95 44.23 3.82
5012 5607 2.439883 TGTGCAAGCTGCCACACA 60.440 55.556 13.85 13.78 44.23 3.72
5013 5608 2.007113 CTGTGCAAGCTGCCACACAA 62.007 55.000 17.11 5.75 44.23 3.33
5014 5609 1.364901 GTGCAAGCTGCCACACAAT 59.635 52.632 11.05 0.00 44.23 2.71
5015 5610 0.942410 GTGCAAGCTGCCACACAATG 60.942 55.000 11.05 0.00 44.23 2.82
5016 5611 1.364901 GCAAGCTGCCACACAATGT 59.635 52.632 0.00 0.00 37.42 2.71
5018 5613 3.551798 GCAAGCTGCCACACAATGTGT 62.552 52.381 13.98 13.98 46.45 3.72
5019 5614 1.113788 AAGCTGCCACACAATGTGTT 58.886 45.000 17.31 0.00 45.08 3.32
5020 5615 1.113788 AGCTGCCACACAATGTGTTT 58.886 45.000 17.31 0.00 45.08 2.83
5021 5616 1.481772 AGCTGCCACACAATGTGTTTT 59.518 42.857 17.31 0.00 45.08 2.43
5022 5617 2.692557 AGCTGCCACACAATGTGTTTTA 59.307 40.909 17.31 4.85 45.08 1.52
5023 5618 3.052036 GCTGCCACACAATGTGTTTTAG 58.948 45.455 17.31 14.73 45.08 1.85
5024 5619 3.490761 GCTGCCACACAATGTGTTTTAGT 60.491 43.478 17.31 0.00 45.08 2.24
5025 5620 4.039151 TGCCACACAATGTGTTTTAGTG 57.961 40.909 17.31 4.37 45.08 2.74
5026 5621 3.181482 TGCCACACAATGTGTTTTAGTGG 60.181 43.478 17.31 14.42 45.08 4.00
5027 5622 3.798548 GCCACACAATGTGTTTTAGTGGG 60.799 47.826 17.31 13.66 45.08 4.61
5028 5623 3.383185 CCACACAATGTGTTTTAGTGGGT 59.617 43.478 17.31 0.00 45.08 4.51
5029 5624 4.358851 CACACAATGTGTTTTAGTGGGTG 58.641 43.478 17.31 0.00 45.08 4.61
5030 5625 4.097135 CACACAATGTGTTTTAGTGGGTGA 59.903 41.667 17.31 0.00 46.99 4.02
5031 5626 4.892934 ACACAATGTGTTTTAGTGGGTGAT 59.107 37.500 13.98 0.00 45.08 3.06
5032 5627 5.009610 ACACAATGTGTTTTAGTGGGTGATC 59.990 40.000 13.98 0.00 45.08 2.92
5033 5628 4.522789 ACAATGTGTTTTAGTGGGTGATCC 59.477 41.667 0.00 0.00 0.00 3.36
5034 5629 4.657814 ATGTGTTTTAGTGGGTGATCCT 57.342 40.909 0.00 0.00 36.20 3.24
5035 5630 4.447138 TGTGTTTTAGTGGGTGATCCTT 57.553 40.909 0.00 0.00 36.20 3.36
5036 5631 4.798882 TGTGTTTTAGTGGGTGATCCTTT 58.201 39.130 0.00 0.00 36.20 3.11
5037 5632 4.825085 TGTGTTTTAGTGGGTGATCCTTTC 59.175 41.667 0.00 0.00 36.20 2.62
5038 5633 4.825085 GTGTTTTAGTGGGTGATCCTTTCA 59.175 41.667 0.00 0.00 36.20 2.69
5144 5739 6.152323 CCTACTCTGCTGTTAAACTGGTAGTA 59.848 42.308 0.00 0.00 0.00 1.82
5197 5795 2.391724 TTTGGTGTCTGGTCTCCGGC 62.392 60.000 0.00 0.00 0.00 6.13
5239 5837 1.827344 CCATCTTGGGCTTCCTTTTCC 59.173 52.381 0.00 0.00 32.67 3.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.109126 GGATCGCCACTCAACAGCC 61.109 63.158 0.00 0.00 0.00 4.85
1 2 2.456119 CGGATCGCCACTCAACAGC 61.456 63.158 0.00 0.00 0.00 4.40
2 3 1.078759 GTCGGATCGCCACTCAACAG 61.079 60.000 0.00 0.00 0.00 3.16
3 4 1.080093 GTCGGATCGCCACTCAACA 60.080 57.895 0.00 0.00 0.00 3.33
4 5 1.078759 CAGTCGGATCGCCACTCAAC 61.079 60.000 0.00 0.00 0.00 3.18
5 6 1.215382 CAGTCGGATCGCCACTCAA 59.785 57.895 0.00 0.00 0.00 3.02
6 7 0.678684 TACAGTCGGATCGCCACTCA 60.679 55.000 0.00 0.00 0.00 3.41
7 8 0.029567 CTACAGTCGGATCGCCACTC 59.970 60.000 0.00 0.00 0.00 3.51
8 9 0.393944 TCTACAGTCGGATCGCCACT 60.394 55.000 0.00 0.00 0.00 4.00
9 10 0.248539 GTCTACAGTCGGATCGCCAC 60.249 60.000 0.00 0.00 0.00 5.01
10 11 0.678684 TGTCTACAGTCGGATCGCCA 60.679 55.000 0.00 0.00 0.00 5.69
11 12 0.248539 GTGTCTACAGTCGGATCGCC 60.249 60.000 0.00 0.00 0.00 5.54
12 13 0.733729 AGTGTCTACAGTCGGATCGC 59.266 55.000 0.00 0.00 0.00 4.58
13 14 2.478031 CCAAGTGTCTACAGTCGGATCG 60.478 54.545 0.00 0.00 0.00 3.69
14 15 2.492484 ACCAAGTGTCTACAGTCGGATC 59.508 50.000 1.91 0.00 0.00 3.36
15 16 2.492484 GACCAAGTGTCTACAGTCGGAT 59.508 50.000 1.91 0.00 41.03 4.18
16 17 1.884579 GACCAAGTGTCTACAGTCGGA 59.115 52.381 1.91 0.00 41.03 4.55
17 18 1.067776 GGACCAAGTGTCTACAGTCGG 60.068 57.143 0.00 0.00 43.89 4.79
18 19 1.887198 AGGACCAAGTGTCTACAGTCG 59.113 52.381 0.00 0.00 43.89 4.18
19 20 2.628657 ACAGGACCAAGTGTCTACAGTC 59.371 50.000 0.00 0.00 43.89 3.51
20 21 2.365617 CACAGGACCAAGTGTCTACAGT 59.634 50.000 8.50 0.00 43.89 3.55
21 22 2.628178 TCACAGGACCAAGTGTCTACAG 59.372 50.000 14.49 0.00 43.89 2.74
22 23 2.364324 GTCACAGGACCAAGTGTCTACA 59.636 50.000 14.49 0.00 43.89 2.74
23 24 2.607282 CGTCACAGGACCAAGTGTCTAC 60.607 54.545 14.49 7.01 43.89 2.59
24 25 1.611977 CGTCACAGGACCAAGTGTCTA 59.388 52.381 14.49 0.00 43.89 2.59
25 26 0.389391 CGTCACAGGACCAAGTGTCT 59.611 55.000 14.49 0.00 43.89 3.41
26 27 0.600255 CCGTCACAGGACCAAGTGTC 60.600 60.000 14.49 9.61 41.13 3.67
27 28 1.445942 CCGTCACAGGACCAAGTGT 59.554 57.895 14.49 0.00 41.13 3.55
28 29 1.301716 CCCGTCACAGGACCAAGTG 60.302 63.158 10.05 10.05 41.13 3.16
29 30 0.470456 TACCCGTCACAGGACCAAGT 60.470 55.000 0.00 0.00 41.13 3.16
30 31 0.902531 ATACCCGTCACAGGACCAAG 59.097 55.000 0.00 0.00 41.13 3.61
31 32 0.899720 GATACCCGTCACAGGACCAA 59.100 55.000 0.00 0.00 41.13 3.67
32 33 0.974010 GGATACCCGTCACAGGACCA 60.974 60.000 0.00 0.00 41.13 4.02
33 34 1.821258 GGATACCCGTCACAGGACC 59.179 63.158 0.00 0.00 41.13 4.46
46 47 2.820787 CGTGAGATACCAGAGGGGATAC 59.179 54.545 0.00 0.00 38.09 2.24
47 48 2.445905 ACGTGAGATACCAGAGGGGATA 59.554 50.000 0.00 0.00 38.09 2.59
48 49 1.218196 ACGTGAGATACCAGAGGGGAT 59.782 52.381 0.00 0.00 41.98 3.85
49 50 0.629596 ACGTGAGATACCAGAGGGGA 59.370 55.000 0.00 0.00 41.15 4.81
50 51 1.033574 GACGTGAGATACCAGAGGGG 58.966 60.000 0.00 0.00 44.81 4.79
51 52 2.060050 AGACGTGAGATACCAGAGGG 57.940 55.000 0.00 0.00 41.29 4.30
52 53 3.566322 CCTAAGACGTGAGATACCAGAGG 59.434 52.174 0.00 0.00 0.00 3.69
53 54 4.200874 ACCTAAGACGTGAGATACCAGAG 58.799 47.826 0.00 0.00 0.00 3.35
54 55 4.232188 ACCTAAGACGTGAGATACCAGA 57.768 45.455 0.00 0.00 0.00 3.86
55 56 4.440250 CCAACCTAAGACGTGAGATACCAG 60.440 50.000 0.00 0.00 0.00 4.00
56 57 3.446161 CCAACCTAAGACGTGAGATACCA 59.554 47.826 0.00 0.00 0.00 3.25
57 58 3.698040 TCCAACCTAAGACGTGAGATACC 59.302 47.826 0.00 0.00 0.00 2.73
58 59 4.734108 GCTCCAACCTAAGACGTGAGATAC 60.734 50.000 0.00 0.00 0.00 2.24
59 60 3.380637 GCTCCAACCTAAGACGTGAGATA 59.619 47.826 0.00 0.00 0.00 1.98
60 61 2.166664 GCTCCAACCTAAGACGTGAGAT 59.833 50.000 0.00 0.00 0.00 2.75
61 62 1.544691 GCTCCAACCTAAGACGTGAGA 59.455 52.381 0.00 0.00 0.00 3.27
62 63 1.404315 GGCTCCAACCTAAGACGTGAG 60.404 57.143 0.00 0.00 0.00 3.51
63 64 0.606604 GGCTCCAACCTAAGACGTGA 59.393 55.000 0.00 0.00 0.00 4.35
64 65 0.608640 AGGCTCCAACCTAAGACGTG 59.391 55.000 0.00 0.00 38.67 4.49
65 66 0.896226 GAGGCTCCAACCTAAGACGT 59.104 55.000 2.15 0.00 41.32 4.34
66 67 0.895530 TGAGGCTCCAACCTAAGACG 59.104 55.000 12.86 0.00 41.32 4.18
67 68 3.055094 TCAATGAGGCTCCAACCTAAGAC 60.055 47.826 12.86 0.00 41.32 3.01
68 69 3.181329 TCAATGAGGCTCCAACCTAAGA 58.819 45.455 12.86 0.00 41.32 2.10
69 70 3.539604 CTCAATGAGGCTCCAACCTAAG 58.460 50.000 12.86 0.00 41.32 2.18
70 71 2.356125 GCTCAATGAGGCTCCAACCTAA 60.356 50.000 12.86 0.00 41.32 2.69
71 72 1.210478 GCTCAATGAGGCTCCAACCTA 59.790 52.381 12.86 0.00 41.32 3.08
72 73 0.034670 GCTCAATGAGGCTCCAACCT 60.035 55.000 12.86 0.00 45.04 3.50
73 74 2.486796 GCTCAATGAGGCTCCAACC 58.513 57.895 12.86 0.00 0.00 3.77
81 82 3.577848 AGTATCAGCTAGGCTCAATGAGG 59.422 47.826 12.66 0.00 36.40 3.86
82 83 4.870123 AGTATCAGCTAGGCTCAATGAG 57.130 45.455 5.78 5.78 36.40 2.90
83 84 4.219507 GCTAGTATCAGCTAGGCTCAATGA 59.780 45.833 0.00 0.00 36.40 2.57
84 85 4.493547 GCTAGTATCAGCTAGGCTCAATG 58.506 47.826 0.00 0.00 36.40 2.82
85 86 4.799564 GCTAGTATCAGCTAGGCTCAAT 57.200 45.455 0.00 0.00 36.40 2.57
95 96 3.181471 TGAGCCAAAGAGCTAGTATCAGC 60.181 47.826 0.00 0.00 45.15 4.26
96 97 4.662468 TGAGCCAAAGAGCTAGTATCAG 57.338 45.455 0.00 0.00 45.15 2.90
97 98 5.104776 ACAATGAGCCAAAGAGCTAGTATCA 60.105 40.000 0.00 0.00 45.15 2.15
98 99 5.363939 ACAATGAGCCAAAGAGCTAGTATC 58.636 41.667 0.00 0.00 45.15 2.24
99 100 5.365021 ACAATGAGCCAAAGAGCTAGTAT 57.635 39.130 0.00 0.00 45.15 2.12
100 101 4.826274 ACAATGAGCCAAAGAGCTAGTA 57.174 40.909 0.00 0.00 45.15 1.82
101 102 3.710209 ACAATGAGCCAAAGAGCTAGT 57.290 42.857 0.00 0.00 45.15 2.57
102 103 6.054295 AGAATACAATGAGCCAAAGAGCTAG 58.946 40.000 0.00 0.00 45.15 3.42
103 104 5.994250 AGAATACAATGAGCCAAAGAGCTA 58.006 37.500 0.00 0.00 45.15 3.32
105 106 6.018343 GTCTAGAATACAATGAGCCAAAGAGC 60.018 42.308 0.00 0.00 0.00 4.09
106 107 6.481644 GGTCTAGAATACAATGAGCCAAAGAG 59.518 42.308 0.00 0.00 0.00 2.85
107 108 6.349300 GGTCTAGAATACAATGAGCCAAAGA 58.651 40.000 0.00 0.00 0.00 2.52
108 109 5.235186 CGGTCTAGAATACAATGAGCCAAAG 59.765 44.000 0.00 0.00 0.00 2.77
109 110 5.116180 CGGTCTAGAATACAATGAGCCAAA 58.884 41.667 0.00 0.00 0.00 3.28
110 111 4.693283 CGGTCTAGAATACAATGAGCCAA 58.307 43.478 0.00 0.00 0.00 4.52
111 112 3.492656 GCGGTCTAGAATACAATGAGCCA 60.493 47.826 0.00 0.00 0.00 4.75
112 113 3.060602 GCGGTCTAGAATACAATGAGCC 58.939 50.000 0.00 0.00 0.00 4.70
113 114 3.717707 TGCGGTCTAGAATACAATGAGC 58.282 45.455 0.00 0.00 0.00 4.26
114 115 5.406780 GGAATGCGGTCTAGAATACAATGAG 59.593 44.000 0.00 0.00 0.00 2.90
115 116 5.297547 GGAATGCGGTCTAGAATACAATGA 58.702 41.667 0.00 0.00 0.00 2.57
116 117 4.150627 CGGAATGCGGTCTAGAATACAATG 59.849 45.833 0.00 0.00 0.00 2.82
117 118 4.202223 ACGGAATGCGGTCTAGAATACAAT 60.202 41.667 0.00 0.00 0.00 2.71
118 119 3.131577 ACGGAATGCGGTCTAGAATACAA 59.868 43.478 0.00 0.00 0.00 2.41
119 120 2.691526 ACGGAATGCGGTCTAGAATACA 59.308 45.455 0.00 0.00 0.00 2.29
120 121 3.306818 GACGGAATGCGGTCTAGAATAC 58.693 50.000 4.14 0.00 40.18 1.89
121 122 2.295349 GGACGGAATGCGGTCTAGAATA 59.705 50.000 10.95 0.00 42.21 1.75
122 123 1.068741 GGACGGAATGCGGTCTAGAAT 59.931 52.381 10.95 0.00 42.21 2.40
123 124 0.458669 GGACGGAATGCGGTCTAGAA 59.541 55.000 10.95 0.00 42.21 2.10
124 125 0.395311 AGGACGGAATGCGGTCTAGA 60.395 55.000 10.95 0.00 42.21 2.43
125 126 0.460311 AAGGACGGAATGCGGTCTAG 59.540 55.000 10.95 0.00 42.21 2.43
126 127 1.406539 GTAAGGACGGAATGCGGTCTA 59.593 52.381 10.95 0.00 42.21 2.59
127 128 0.175073 GTAAGGACGGAATGCGGTCT 59.825 55.000 10.95 0.00 42.21 3.85
128 129 1.143969 CGTAAGGACGGAATGCGGTC 61.144 60.000 2.71 2.71 45.63 4.79
129 130 1.153706 CGTAAGGACGGAATGCGGT 60.154 57.895 0.00 0.00 45.63 5.68
130 131 3.700961 CGTAAGGACGGAATGCGG 58.299 61.111 0.00 0.00 45.63 5.69
140 141 9.882996 CGTTATACATATAGTTGAACGTAAGGA 57.117 33.333 0.00 0.00 39.89 3.36
141 142 8.633408 GCGTTATACATATAGTTGAACGTAAGG 58.367 37.037 16.31 0.00 43.39 2.69
142 143 8.633408 GGCGTTATACATATAGTTGAACGTAAG 58.367 37.037 16.31 0.00 43.39 2.34
143 144 7.323416 CGGCGTTATACATATAGTTGAACGTAA 59.677 37.037 0.00 0.00 43.39 3.18
144 145 6.796552 CGGCGTTATACATATAGTTGAACGTA 59.203 38.462 0.00 0.00 43.39 3.57
145 146 5.626543 CGGCGTTATACATATAGTTGAACGT 59.373 40.000 0.00 0.00 43.39 3.99
146 147 5.626543 ACGGCGTTATACATATAGTTGAACG 59.373 40.000 6.77 0.00 43.87 3.95
147 148 6.638063 TCACGGCGTTATACATATAGTTGAAC 59.362 38.462 11.19 0.00 0.00 3.18
148 149 6.737118 TCACGGCGTTATACATATAGTTGAA 58.263 36.000 11.19 0.00 0.00 2.69
149 150 6.316440 TCACGGCGTTATACATATAGTTGA 57.684 37.500 11.19 0.00 0.00 3.18
150 151 5.060569 GCTCACGGCGTTATACATATAGTTG 59.939 44.000 11.19 0.00 0.00 3.16
151 152 5.159209 GCTCACGGCGTTATACATATAGTT 58.841 41.667 11.19 0.00 0.00 2.24
152 153 4.216902 TGCTCACGGCGTTATACATATAGT 59.783 41.667 11.19 0.00 45.43 2.12
153 154 4.729595 TGCTCACGGCGTTATACATATAG 58.270 43.478 11.19 0.00 45.43 1.31
154 155 4.729595 CTGCTCACGGCGTTATACATATA 58.270 43.478 11.19 0.00 45.43 0.86
155 156 3.575630 CTGCTCACGGCGTTATACATAT 58.424 45.455 11.19 0.00 45.43 1.78
156 157 2.860971 GCTGCTCACGGCGTTATACATA 60.861 50.000 11.19 0.00 45.43 2.29
157 158 1.852942 CTGCTCACGGCGTTATACAT 58.147 50.000 11.19 0.00 45.43 2.29
158 159 0.804544 GCTGCTCACGGCGTTATACA 60.805 55.000 11.19 5.67 45.43 2.29
159 160 1.925052 GCTGCTCACGGCGTTATAC 59.075 57.895 11.19 0.25 45.43 1.47
160 161 4.412933 GCTGCTCACGGCGTTATA 57.587 55.556 11.19 0.00 45.43 0.98
167 168 3.077556 ACTAGGGGCTGCTCACGG 61.078 66.667 0.21 0.00 0.00 4.94
168 169 2.185350 CACTAGGGGCTGCTCACG 59.815 66.667 0.21 0.00 0.00 4.35
169 170 1.519719 CTCACTAGGGGCTGCTCAC 59.480 63.158 0.21 0.00 0.00 3.51
170 171 2.362369 GCTCACTAGGGGCTGCTCA 61.362 63.158 0.21 0.00 0.00 4.26
171 172 2.362369 TGCTCACTAGGGGCTGCTC 61.362 63.158 0.00 0.00 0.00 4.26
172 173 2.284921 TGCTCACTAGGGGCTGCT 60.285 61.111 0.00 0.00 0.00 4.24
173 174 2.124942 GTGCTCACTAGGGGCTGC 60.125 66.667 6.95 0.00 0.00 5.25
174 175 1.519719 GAGTGCTCACTAGGGGCTG 59.480 63.158 2.07 0.00 42.66 4.85
175 176 2.055042 CGAGTGCTCACTAGGGGCT 61.055 63.158 2.07 0.00 42.66 5.19
176 177 1.035932 TACGAGTGCTCACTAGGGGC 61.036 60.000 13.28 0.00 42.66 5.80
177 178 1.025812 CTACGAGTGCTCACTAGGGG 58.974 60.000 13.28 3.64 42.66 4.79
178 179 1.402259 CACTACGAGTGCTCACTAGGG 59.598 57.143 13.28 8.64 42.66 3.53
179 180 2.834574 CACTACGAGTGCTCACTAGG 57.165 55.000 13.28 6.95 42.66 3.02
210 211 9.646522 AGGAAACACTATGGATGCTTATTTATT 57.353 29.630 0.00 0.00 0.00 1.40
212 213 9.778741 CTAGGAAACACTATGGATGCTTATTTA 57.221 33.333 0.00 0.00 0.00 1.40
213 214 8.494433 TCTAGGAAACACTATGGATGCTTATTT 58.506 33.333 0.00 0.00 0.00 1.40
214 215 8.034313 TCTAGGAAACACTATGGATGCTTATT 57.966 34.615 0.00 0.00 0.00 1.40
215 216 7.618019 TCTAGGAAACACTATGGATGCTTAT 57.382 36.000 0.00 0.00 0.00 1.73
216 217 7.432148 TTCTAGGAAACACTATGGATGCTTA 57.568 36.000 0.00 0.00 0.00 3.09
217 218 5.957771 TCTAGGAAACACTATGGATGCTT 57.042 39.130 0.00 0.00 0.00 3.91
218 219 5.686124 GCTTCTAGGAAACACTATGGATGCT 60.686 44.000 0.00 0.00 0.00 3.79
219 220 4.513318 GCTTCTAGGAAACACTATGGATGC 59.487 45.833 0.00 0.00 0.00 3.91
220 221 5.674525 TGCTTCTAGGAAACACTATGGATG 58.325 41.667 0.00 0.00 0.00 3.51
221 222 5.957771 TGCTTCTAGGAAACACTATGGAT 57.042 39.130 0.00 0.00 0.00 3.41
222 223 5.163301 GGATGCTTCTAGGAAACACTATGGA 60.163 44.000 0.00 0.00 0.00 3.41
223 224 5.059833 GGATGCTTCTAGGAAACACTATGG 58.940 45.833 0.00 0.00 0.00 2.74
224 225 5.674525 TGGATGCTTCTAGGAAACACTATG 58.325 41.667 0.00 0.00 0.00 2.23
225 226 5.957771 TGGATGCTTCTAGGAAACACTAT 57.042 39.130 0.00 0.00 0.00 2.12
226 227 5.957771 ATGGATGCTTCTAGGAAACACTA 57.042 39.130 0.00 0.00 0.00 2.74
227 228 4.851639 ATGGATGCTTCTAGGAAACACT 57.148 40.909 0.00 0.00 0.00 3.55
228 229 5.525378 CACTATGGATGCTTCTAGGAAACAC 59.475 44.000 0.00 0.00 0.00 3.32
229 230 5.189736 ACACTATGGATGCTTCTAGGAAACA 59.810 40.000 0.00 0.00 0.00 2.83
230 231 5.675538 ACACTATGGATGCTTCTAGGAAAC 58.324 41.667 0.00 0.00 0.00 2.78
231 232 5.957771 ACACTATGGATGCTTCTAGGAAA 57.042 39.130 0.00 0.00 0.00 3.13
232 233 5.957771 AACACTATGGATGCTTCTAGGAA 57.042 39.130 0.00 0.00 0.00 3.36
233 234 5.163301 GGAAACACTATGGATGCTTCTAGGA 60.163 44.000 0.00 0.00 0.00 2.94
234 235 5.059833 GGAAACACTATGGATGCTTCTAGG 58.940 45.833 0.00 0.00 0.00 3.02
235 236 5.923204 AGGAAACACTATGGATGCTTCTAG 58.077 41.667 0.00 0.00 0.00 2.43
236 237 5.957771 AGGAAACACTATGGATGCTTCTA 57.042 39.130 0.00 0.00 0.00 2.10
237 238 4.851639 AGGAAACACTATGGATGCTTCT 57.148 40.909 0.00 0.00 0.00 2.85
238 239 5.918608 TCTAGGAAACACTATGGATGCTTC 58.081 41.667 0.00 0.00 0.00 3.86
239 240 5.957771 TCTAGGAAACACTATGGATGCTT 57.042 39.130 0.00 0.00 0.00 3.91
240 241 5.426833 ACTTCTAGGAAACACTATGGATGCT 59.573 40.000 0.00 0.00 0.00 3.79
241 242 5.675538 ACTTCTAGGAAACACTATGGATGC 58.324 41.667 0.00 0.00 0.00 3.91
242 243 7.147724 TGGTACTTCTAGGAAACACTATGGATG 60.148 40.741 0.00 0.00 0.00 3.51
243 244 6.901300 TGGTACTTCTAGGAAACACTATGGAT 59.099 38.462 0.00 0.00 0.00 3.41
244 245 6.154021 GTGGTACTTCTAGGAAACACTATGGA 59.846 42.308 0.00 0.00 0.00 3.41
245 246 6.338937 GTGGTACTTCTAGGAAACACTATGG 58.661 44.000 0.00 0.00 0.00 2.74
246 247 6.070995 TGGTGGTACTTCTAGGAAACACTATG 60.071 42.308 0.00 0.00 0.00 2.23
247 248 6.021030 TGGTGGTACTTCTAGGAAACACTAT 58.979 40.000 0.00 0.00 0.00 2.12
248 249 5.396485 TGGTGGTACTTCTAGGAAACACTA 58.604 41.667 0.00 0.00 0.00 2.74
249 250 4.228824 TGGTGGTACTTCTAGGAAACACT 58.771 43.478 0.00 0.00 0.00 3.55
250 251 4.040095 ACTGGTGGTACTTCTAGGAAACAC 59.960 45.833 0.00 0.00 0.00 3.32
251 252 4.228824 ACTGGTGGTACTTCTAGGAAACA 58.771 43.478 0.00 0.00 0.00 2.83
252 253 4.886496 ACTGGTGGTACTTCTAGGAAAC 57.114 45.455 0.00 0.00 0.00 2.78
253 254 5.990120 GTACTGGTGGTACTTCTAGGAAA 57.010 43.478 0.00 0.00 45.25 3.13
263 264 5.920226 GAGTGTACTCGGTACTGGTGGTAC 61.920 54.167 18.05 18.05 40.31 3.34
264 265 2.040278 AGTGTACTCGGTACTGGTGGTA 59.960 50.000 0.85 0.99 39.49 3.25
265 266 1.202976 AGTGTACTCGGTACTGGTGGT 60.203 52.381 0.85 1.92 39.49 4.16
266 267 1.471684 GAGTGTACTCGGTACTGGTGG 59.528 57.143 0.85 0.00 39.49 4.61
267 268 2.915738 GAGTGTACTCGGTACTGGTG 57.084 55.000 0.85 0.00 39.49 4.17
277 278 3.444388 AGAAATGACCGGAGAGTGTACTC 59.556 47.826 9.46 3.85 43.17 2.59
278 279 3.432378 AGAAATGACCGGAGAGTGTACT 58.568 45.455 9.46 0.00 0.00 2.73
279 280 3.870633 AGAAATGACCGGAGAGTGTAC 57.129 47.619 9.46 0.00 0.00 2.90
280 281 4.597004 AGTAGAAATGACCGGAGAGTGTA 58.403 43.478 9.46 0.00 0.00 2.90
281 282 3.432378 AGTAGAAATGACCGGAGAGTGT 58.568 45.455 9.46 0.00 0.00 3.55
282 283 3.697045 AGAGTAGAAATGACCGGAGAGTG 59.303 47.826 9.46 0.00 0.00 3.51
283 284 3.697045 CAGAGTAGAAATGACCGGAGAGT 59.303 47.826 9.46 0.00 0.00 3.24
284 285 3.948473 TCAGAGTAGAAATGACCGGAGAG 59.052 47.826 9.46 0.00 0.00 3.20
285 286 3.964411 TCAGAGTAGAAATGACCGGAGA 58.036 45.455 9.46 0.00 0.00 3.71
286 287 4.720649 TTCAGAGTAGAAATGACCGGAG 57.279 45.455 9.46 0.00 0.00 4.63
287 288 6.978674 ATATTCAGAGTAGAAATGACCGGA 57.021 37.500 9.46 0.00 0.00 5.14
288 289 8.577296 TCTTATATTCAGAGTAGAAATGACCGG 58.423 37.037 0.00 0.00 0.00 5.28
370 371 8.639761 GGTGGTACTTCAGAGTATTACATATGT 58.360 37.037 13.93 13.93 40.33 2.29
371 372 8.638873 TGGTGGTACTTCAGAGTATTACATATG 58.361 37.037 0.00 0.00 40.33 1.78
372 373 8.777578 TGGTGGTACTTCAGAGTATTACATAT 57.222 34.615 0.00 0.00 40.33 1.78
373 374 7.837689 ACTGGTGGTACTTCAGAGTATTACATA 59.162 37.037 14.27 0.00 40.33 2.29
374 375 6.668283 ACTGGTGGTACTTCAGAGTATTACAT 59.332 38.462 14.27 0.00 40.33 2.29
375 376 6.014647 ACTGGTGGTACTTCAGAGTATTACA 58.985 40.000 14.27 0.00 40.33 2.41
376 377 6.331061 CACTGGTGGTACTTCAGAGTATTAC 58.669 44.000 14.27 0.00 40.33 1.89
377 378 5.105473 GCACTGGTGGTACTTCAGAGTATTA 60.105 44.000 14.27 0.00 40.33 0.98
378 379 4.322801 GCACTGGTGGTACTTCAGAGTATT 60.323 45.833 14.27 0.00 40.33 1.89
379 380 3.195825 GCACTGGTGGTACTTCAGAGTAT 59.804 47.826 14.27 0.00 40.33 2.12
380 381 2.561419 GCACTGGTGGTACTTCAGAGTA 59.439 50.000 14.27 0.00 37.33 2.59
381 382 1.344763 GCACTGGTGGTACTTCAGAGT 59.655 52.381 14.27 0.24 39.97 3.24
382 383 1.670087 CGCACTGGTGGTACTTCAGAG 60.670 57.143 14.27 9.38 34.41 3.35
383 384 0.317160 CGCACTGGTGGTACTTCAGA 59.683 55.000 14.27 0.00 34.41 3.27
384 385 0.670546 CCGCACTGGTGGTACTTCAG 60.671 60.000 2.84 1.22 39.94 3.02
385 386 1.116536 TCCGCACTGGTGGTACTTCA 61.117 55.000 2.84 0.00 45.25 3.02
386 387 0.389948 CTCCGCACTGGTGGTACTTC 60.390 60.000 2.84 0.00 45.25 3.01
387 388 1.119574 ACTCCGCACTGGTGGTACTT 61.120 55.000 2.84 0.00 45.25 2.24
388 389 0.251474 TACTCCGCACTGGTGGTACT 60.251 55.000 2.84 0.00 45.25 2.73
389 390 0.108945 GTACTCCGCACTGGTGGTAC 60.109 60.000 2.84 3.30 45.25 3.34
390 391 0.251474 AGTACTCCGCACTGGTGGTA 60.251 55.000 2.84 0.00 45.25 3.25
391 392 0.251474 TAGTACTCCGCACTGGTGGT 60.251 55.000 0.00 0.00 45.25 4.16
392 393 0.892755 TTAGTACTCCGCACTGGTGG 59.107 55.000 0.00 0.00 46.45 4.61
393 394 2.736144 TTTAGTACTCCGCACTGGTG 57.264 50.000 0.00 0.00 39.52 4.17
394 395 3.975168 AATTTAGTACTCCGCACTGGT 57.025 42.857 0.00 0.00 39.52 4.00
395 396 5.622770 AAAAATTTAGTACTCCGCACTGG 57.377 39.130 0.00 0.00 40.09 4.00
480 481 9.683069 ATCTGCATGAAGTTAAACTTTGTAAAG 57.317 29.630 0.00 2.94 38.80 1.85
481 482 9.677567 GATCTGCATGAAGTTAAACTTTGTAAA 57.322 29.630 0.00 0.00 38.80 2.01
482 483 9.066892 AGATCTGCATGAAGTTAAACTTTGTAA 57.933 29.630 0.00 0.00 38.80 2.41
483 484 8.621532 AGATCTGCATGAAGTTAAACTTTGTA 57.378 30.769 0.00 0.00 38.80 2.41
484 485 7.516198 AGATCTGCATGAAGTTAAACTTTGT 57.484 32.000 0.00 0.00 38.80 2.83
489 490 9.604626 GCATATAAGATCTGCATGAAGTTAAAC 57.395 33.333 13.09 0.00 35.96 2.01
490 491 9.341078 TGCATATAAGATCTGCATGAAGTTAAA 57.659 29.630 13.09 0.00 40.75 1.52
491 492 8.907222 TGCATATAAGATCTGCATGAAGTTAA 57.093 30.769 13.09 0.00 40.75 2.01
492 493 8.907222 TTGCATATAAGATCTGCATGAAGTTA 57.093 30.769 7.33 0.00 44.65 2.24
493 494 7.812690 TTGCATATAAGATCTGCATGAAGTT 57.187 32.000 7.33 0.00 44.65 2.66
494 495 7.501559 ACTTTGCATATAAGATCTGCATGAAGT 59.498 33.333 13.87 13.87 44.65 3.01
495 496 7.872881 ACTTTGCATATAAGATCTGCATGAAG 58.127 34.615 7.33 10.67 44.65 3.02
496 497 7.812690 ACTTTGCATATAAGATCTGCATGAA 57.187 32.000 7.33 0.00 44.65 2.57
497 498 8.907222 TTACTTTGCATATAAGATCTGCATGA 57.093 30.769 7.33 0.40 44.65 3.07
498 499 9.390795 GTTTACTTTGCATATAAGATCTGCATG 57.609 33.333 7.33 7.13 44.65 4.06
499 500 9.123902 TGTTTACTTTGCATATAAGATCTGCAT 57.876 29.630 7.33 1.92 44.65 3.96
500 501 8.504812 TGTTTACTTTGCATATAAGATCTGCA 57.495 30.769 0.00 0.00 43.69 4.41
501 502 9.787532 TTTGTTTACTTTGCATATAAGATCTGC 57.212 29.630 0.00 0.00 36.45 4.26
507 508 9.520204 CCATCCTTTGTTTACTTTGCATATAAG 57.480 33.333 0.00 0.00 0.00 1.73
508 509 8.474025 CCCATCCTTTGTTTACTTTGCATATAA 58.526 33.333 0.00 0.00 0.00 0.98
509 510 7.836685 TCCCATCCTTTGTTTACTTTGCATATA 59.163 33.333 0.00 0.00 0.00 0.86
510 511 6.667414 TCCCATCCTTTGTTTACTTTGCATAT 59.333 34.615 0.00 0.00 0.00 1.78
511 512 6.013379 TCCCATCCTTTGTTTACTTTGCATA 58.987 36.000 0.00 0.00 0.00 3.14
512 513 4.837860 TCCCATCCTTTGTTTACTTTGCAT 59.162 37.500 0.00 0.00 0.00 3.96
513 514 4.219115 TCCCATCCTTTGTTTACTTTGCA 58.781 39.130 0.00 0.00 0.00 4.08
514 515 4.321974 CCTCCCATCCTTTGTTTACTTTGC 60.322 45.833 0.00 0.00 0.00 3.68
515 516 4.220602 CCCTCCCATCCTTTGTTTACTTTG 59.779 45.833 0.00 0.00 0.00 2.77
524 525 4.729552 TGATATTCCCTCCCATCCTTTG 57.270 45.455 0.00 0.00 0.00 2.77
527 528 2.579860 GCATGATATTCCCTCCCATCCT 59.420 50.000 0.00 0.00 0.00 3.24
531 532 1.625315 CGAGCATGATATTCCCTCCCA 59.375 52.381 0.00 0.00 0.00 4.37
532 533 1.902508 TCGAGCATGATATTCCCTCCC 59.097 52.381 0.00 0.00 0.00 4.30
537 538 2.808543 GGGTGTTCGAGCATGATATTCC 59.191 50.000 4.92 0.00 0.00 3.01
540 541 1.412710 ACGGGTGTTCGAGCATGATAT 59.587 47.619 4.92 0.00 0.00 1.63
541 542 0.821517 ACGGGTGTTCGAGCATGATA 59.178 50.000 4.92 0.00 0.00 2.15
542 543 0.460284 GACGGGTGTTCGAGCATGAT 60.460 55.000 4.92 0.00 0.00 2.45
544 545 1.374125 TGACGGGTGTTCGAGCATG 60.374 57.895 4.92 1.46 0.00 4.06
545 546 1.374252 GTGACGGGTGTTCGAGCAT 60.374 57.895 4.92 0.00 0.00 3.79
547 548 0.731855 GTAGTGACGGGTGTTCGAGC 60.732 60.000 0.00 0.00 0.00 5.03
548 549 0.109412 GGTAGTGACGGGTGTTCGAG 60.109 60.000 0.00 0.00 0.00 4.04
549 550 1.526575 GGGTAGTGACGGGTGTTCGA 61.527 60.000 0.00 0.00 0.00 3.71
571 574 0.448197 TTTGCTTGTTCACGCGTTGA 59.552 45.000 10.22 8.30 0.00 3.18
576 579 0.503961 GTGCATTTGCTTGTTCACGC 59.496 50.000 3.94 0.00 42.66 5.34
601 605 1.077716 GTTTAGGATGGCCTGCCGT 60.078 57.895 3.32 1.68 46.45 5.68
604 608 1.340017 TGACAGTTTAGGATGGCCTGC 60.340 52.381 3.32 0.00 46.45 4.85
607 611 1.369625 CGTGACAGTTTAGGATGGCC 58.630 55.000 0.00 0.00 0.00 5.36
608 612 1.066430 TCCGTGACAGTTTAGGATGGC 60.066 52.381 0.00 0.00 0.00 4.40
609 613 2.418746 CCTCCGTGACAGTTTAGGATGG 60.419 54.545 0.00 0.00 0.00 3.51
610 614 2.496070 TCCTCCGTGACAGTTTAGGATG 59.504 50.000 0.00 0.00 0.00 3.51
611 615 2.816411 TCCTCCGTGACAGTTTAGGAT 58.184 47.619 0.00 0.00 0.00 3.24
626 630 2.764128 TGGGTCGCAGGATCCTCC 60.764 66.667 12.69 10.18 44.38 4.30
629 633 0.468226 TTATGTGGGTCGCAGGATCC 59.532 55.000 2.48 2.48 44.33 3.36
639 643 8.494016 TTTTCAATTTTCGTTTTTATGTGGGT 57.506 26.923 0.00 0.00 0.00 4.51
652 656 8.708742 GGACCTATTTTTCCTTTTCAATTTTCG 58.291 33.333 0.00 0.00 0.00 3.46
674 684 2.581246 ACTAGGGAAAGGAATTGGGACC 59.419 50.000 0.00 0.00 0.00 4.46
763 774 5.867903 AAGAGAGAGAGAGAGAGAGAGAG 57.132 47.826 0.00 0.00 0.00 3.20
764 775 5.598830 GGTAAGAGAGAGAGAGAGAGAGAGA 59.401 48.000 0.00 0.00 0.00 3.10
765 776 5.600484 AGGTAAGAGAGAGAGAGAGAGAGAG 59.400 48.000 0.00 0.00 0.00 3.20
766 777 5.529289 AGGTAAGAGAGAGAGAGAGAGAGA 58.471 45.833 0.00 0.00 0.00 3.10
767 778 5.878406 AGGTAAGAGAGAGAGAGAGAGAG 57.122 47.826 0.00 0.00 0.00 3.20
768 779 6.183360 GCTTAGGTAAGAGAGAGAGAGAGAGA 60.183 46.154 0.71 0.00 35.33 3.10
805 816 3.689649 GGTGGGTGTTGCTATTTACAGAG 59.310 47.826 0.00 0.00 0.00 3.35
806 817 3.560453 GGGTGGGTGTTGCTATTTACAGA 60.560 47.826 0.00 0.00 0.00 3.41
807 818 2.752903 GGGTGGGTGTTGCTATTTACAG 59.247 50.000 0.00 0.00 0.00 2.74
808 819 2.108425 TGGGTGGGTGTTGCTATTTACA 59.892 45.455 0.00 0.00 0.00 2.41
809 820 2.797786 TGGGTGGGTGTTGCTATTTAC 58.202 47.619 0.00 0.00 0.00 2.01
810 821 3.626222 GGATGGGTGGGTGTTGCTATTTA 60.626 47.826 0.00 0.00 0.00 1.40
811 822 2.456577 GATGGGTGGGTGTTGCTATTT 58.543 47.619 0.00 0.00 0.00 1.40
970 992 4.815108 CCGGGCTAGGGTTTGGGC 62.815 72.222 0.00 0.00 0.00 5.36
1272 1294 1.206831 CGACTCGAGCACGTTCTCA 59.793 57.895 13.61 2.14 40.69 3.27
1341 1366 2.425668 CGCCGAGAAATAAAACCCCAAT 59.574 45.455 0.00 0.00 0.00 3.16
1342 1367 1.813786 CGCCGAGAAATAAAACCCCAA 59.186 47.619 0.00 0.00 0.00 4.12
1457 1482 4.038402 AGAACAAGCCAAATTGACAAGGAG 59.962 41.667 0.00 0.00 34.20 3.69
1543 1568 8.527810 TCCCCAATAAACAGCAAAGTTTAATAG 58.472 33.333 11.46 6.36 44.41 1.73
1550 1575 5.823861 AAATCCCCAATAAACAGCAAAGT 57.176 34.783 0.00 0.00 0.00 2.66
1575 1600 2.917971 CAGCGAAAGAAGAGTTAGACGG 59.082 50.000 0.00 0.00 0.00 4.79
1577 1602 5.462398 TCAAACAGCGAAAGAAGAGTTAGAC 59.538 40.000 0.00 0.00 0.00 2.59
1578 1603 5.597806 TCAAACAGCGAAAGAAGAGTTAGA 58.402 37.500 0.00 0.00 0.00 2.10
1596 1624 3.467803 AGGGCTATTACATCGCTCAAAC 58.532 45.455 0.00 0.00 0.00 2.93
1608 1636 4.301072 AAGCAACAACAGAGGGCTATTA 57.699 40.909 0.00 0.00 33.80 0.98
1614 1642 4.917415 CGAAATTTAAGCAACAACAGAGGG 59.083 41.667 0.00 0.00 0.00 4.30
1615 1643 4.917415 CCGAAATTTAAGCAACAACAGAGG 59.083 41.667 0.00 0.00 0.00 3.69
1660 1689 5.641209 GCAAAGACATCACTCACACTAGATT 59.359 40.000 0.00 0.00 0.00 2.40
1661 1690 5.046735 AGCAAAGACATCACTCACACTAGAT 60.047 40.000 0.00 0.00 0.00 1.98
1675 1704 6.071728 CCAGGAAATTAACAGAGCAAAGACAT 60.072 38.462 0.00 0.00 0.00 3.06
1678 1707 4.218417 GCCAGGAAATTAACAGAGCAAAGA 59.782 41.667 0.00 0.00 0.00 2.52
1679 1708 4.488879 GCCAGGAAATTAACAGAGCAAAG 58.511 43.478 0.00 0.00 0.00 2.77
1707 1744 0.519961 AAACCCATTACGAGCAACGC 59.480 50.000 0.00 0.00 46.94 4.84
1715 1752 6.687081 TTTGGAATAGCTAAACCCATTACG 57.313 37.500 14.29 0.00 0.00 3.18
1837 1877 6.242396 TCGAAACATAGAAAGAAATTGGGGA 58.758 36.000 0.00 0.00 0.00 4.81
1874 1914 2.693074 AGCTTTGGGGTGTAACAACTTG 59.307 45.455 0.00 0.00 39.98 3.16
1883 1923 5.185056 GTGTTATAATTGAGCTTTGGGGTGT 59.815 40.000 0.00 0.00 0.00 4.16
2156 2235 3.848975 ACCCATCAAGAAATGAGGTCTCT 59.151 43.478 0.00 0.00 42.53 3.10
2157 2236 4.227864 ACCCATCAAGAAATGAGGTCTC 57.772 45.455 0.00 0.00 42.53 3.36
2279 2361 6.454795 TCCTTTCACTTCAACATTTAATGGC 58.545 36.000 9.88 0.00 33.60 4.40
2290 2372 1.071699 CGACCCCTCCTTTCACTTCAA 59.928 52.381 0.00 0.00 0.00 2.69
2428 2511 3.887621 TGTTAGCTCCTGACACATACC 57.112 47.619 0.00 0.00 0.00 2.73
2433 2516 6.371548 TCAAAACATATGTTAGCTCCTGACAC 59.628 38.462 21.07 0.00 37.25 3.67
2476 2559 4.970860 AGATGCGTACCTACTAGGAGTA 57.029 45.455 9.28 0.51 37.67 2.59
2477 2560 3.860968 AGATGCGTACCTACTAGGAGT 57.139 47.619 9.28 0.00 37.67 3.85
2478 2561 3.186817 CGAAGATGCGTACCTACTAGGAG 59.813 52.174 9.28 0.00 37.67 3.69
2479 2562 3.136763 CGAAGATGCGTACCTACTAGGA 58.863 50.000 9.28 0.00 37.67 2.94
2480 2563 2.350580 GCGAAGATGCGTACCTACTAGG 60.351 54.545 0.00 0.00 42.49 3.02
2481 2564 2.350580 GGCGAAGATGCGTACCTACTAG 60.351 54.545 0.00 0.00 35.06 2.57
2482 2565 1.605710 GGCGAAGATGCGTACCTACTA 59.394 52.381 0.00 0.00 35.06 1.82
2504 2587 2.711542 CGGATTTTGACCAGCTTAGGT 58.288 47.619 0.00 0.00 46.82 3.08
2566 2649 1.406180 TGATGGTGCAATGCATGTAGC 59.594 47.619 12.38 5.99 41.91 3.58
2567 2650 2.543031 GCTGATGGTGCAATGCATGTAG 60.543 50.000 12.38 7.31 41.91 2.74
2568 2651 1.406180 GCTGATGGTGCAATGCATGTA 59.594 47.619 12.38 0.97 41.91 2.29
2569 2652 0.174845 GCTGATGGTGCAATGCATGT 59.825 50.000 12.38 0.00 41.91 3.21
2570 2653 0.529773 GGCTGATGGTGCAATGCATG 60.530 55.000 12.38 0.00 41.91 4.06
3043 3128 4.150454 CTCGCTCCCTCCCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
3046 3131 4.144727 TCCCTCGCTCCCTCCCTC 62.145 72.222 0.00 0.00 0.00 4.30
3047 3132 4.150454 CTCCCTCGCTCCCTCCCT 62.150 72.222 0.00 0.00 0.00 4.20
3048 3133 2.987355 CTACTCCCTCGCTCCCTCCC 62.987 70.000 0.00 0.00 0.00 4.30
3049 3134 1.529713 CTACTCCCTCGCTCCCTCC 60.530 68.421 0.00 0.00 0.00 4.30
3050 3135 2.197605 GCTACTCCCTCGCTCCCTC 61.198 68.421 0.00 0.00 0.00 4.30
3051 3136 2.123640 GCTACTCCCTCGCTCCCT 60.124 66.667 0.00 0.00 0.00 4.20
3052 3137 3.228017 GGCTACTCCCTCGCTCCC 61.228 72.222 0.00 0.00 0.00 4.30
3053 3138 2.123640 AGGCTACTCCCTCGCTCC 60.124 66.667 0.00 0.00 34.51 4.70
3054 3139 1.755008 ACAGGCTACTCCCTCGCTC 60.755 63.158 0.00 0.00 31.24 5.03
3055 3140 2.055042 CACAGGCTACTCCCTCGCT 61.055 63.158 0.00 0.00 31.24 4.93
3056 3141 2.496817 CACAGGCTACTCCCTCGC 59.503 66.667 0.00 0.00 31.24 5.03
3057 3142 2.496817 GCACAGGCTACTCCCTCG 59.503 66.667 0.00 0.00 36.96 4.63
3058 3143 1.990060 TGGCACAGGCTACTCCCTC 60.990 63.158 0.00 0.00 40.87 4.30
3246 3340 2.831685 ACTGTTTAGGACGTGCATGA 57.168 45.000 14.17 0.00 0.00 3.07
3333 3427 2.168521 TGTCTCTGCACCTGGCTATTAC 59.831 50.000 0.00 0.00 45.15 1.89
3374 3470 2.150014 AAAGTTAGGCCGGCCACCAT 62.150 55.000 45.13 28.32 38.92 3.55
3519 3615 1.263217 CTAGCACACAACCGAAACACC 59.737 52.381 0.00 0.00 0.00 4.16
3526 3622 1.803334 TAAAGGCTAGCACACAACCG 58.197 50.000 18.24 0.00 0.00 4.44
3729 3825 8.956426 GGTATGGAAAAAGAAGAACACATATCA 58.044 33.333 0.00 0.00 0.00 2.15
4102 4209 8.912988 TGCGAATATATTGAAAGATTTCCCTTT 58.087 29.630 1.78 0.00 38.92 3.11
4103 4210 8.463930 TGCGAATATATTGAAAGATTTCCCTT 57.536 30.769 1.78 0.00 36.36 3.95
4104 4211 7.721399 ACTGCGAATATATTGAAAGATTTCCCT 59.279 33.333 1.78 0.00 36.36 4.20
4105 4212 7.805071 CACTGCGAATATATTGAAAGATTTCCC 59.195 37.037 1.78 0.00 36.36 3.97
4106 4213 8.559536 TCACTGCGAATATATTGAAAGATTTCC 58.440 33.333 1.78 0.00 36.36 3.13
4107 4214 9.935682 TTCACTGCGAATATATTGAAAGATTTC 57.064 29.630 1.78 0.00 37.69 2.17
4122 4229 1.825090 TGGCATTCTTCACTGCGAAT 58.175 45.000 0.00 0.00 39.30 3.34
4348 4455 2.683933 GGTGGAGGGAGCGGAGAA 60.684 66.667 0.00 0.00 0.00 2.87
4389 4496 1.223187 AACAAAGCTAACACGACGGG 58.777 50.000 0.00 0.00 0.00 5.28
4743 4855 2.340337 GGCACATGAATTTCAAGCACC 58.660 47.619 17.74 9.66 0.00 5.01
4744 4856 2.028748 AGGGCACATGAATTTCAAGCAC 60.029 45.455 17.74 15.57 0.00 4.40
4814 4937 7.935338 ATAAAAAGCATCGAAGCAATAATGG 57.065 32.000 15.84 0.00 36.85 3.16
4827 4950 6.275335 TGGAGCATAGCAAATAAAAAGCATC 58.725 36.000 0.00 0.00 0.00 3.91
4835 4958 4.888823 TGAGCAATGGAGCATAGCAAATAA 59.111 37.500 0.00 0.00 36.85 1.40
4983 5578 1.881973 GCTTGCACAGTGAAAGGATCA 59.118 47.619 21.20 0.00 35.05 2.92
5007 5602 9.800913 GGATCACCCACTAAAACACATTGTGTG 62.801 44.444 22.42 12.48 43.64 3.82
5008 5603 7.911054 GGATCACCCACTAAAACACATTGTGT 61.911 42.308 16.62 16.62 40.94 3.72
5009 5604 4.909696 TCACCCACTAAAACACATTGTG 57.090 40.909 15.18 15.18 39.75 3.33
5010 5605 4.522789 GGATCACCCACTAAAACACATTGT 59.477 41.667 0.00 0.00 34.14 2.71
5011 5606 4.766891 AGGATCACCCACTAAAACACATTG 59.233 41.667 0.00 0.00 37.41 2.82
5012 5607 4.998051 AGGATCACCCACTAAAACACATT 58.002 39.130 0.00 0.00 37.41 2.71
5013 5608 4.657814 AGGATCACCCACTAAAACACAT 57.342 40.909 0.00 0.00 37.41 3.21
5014 5609 4.447138 AAGGATCACCCACTAAAACACA 57.553 40.909 0.00 0.00 37.41 3.72
5015 5610 4.825085 TGAAAGGATCACCCACTAAAACAC 59.175 41.667 0.00 0.00 37.41 3.32
5016 5611 5.055265 TGAAAGGATCACCCACTAAAACA 57.945 39.130 0.00 0.00 37.41 2.83
5028 5623 1.881973 GCTTGCACAGTGAAAGGATCA 59.118 47.619 21.20 0.00 35.05 2.92
5029 5624 2.095364 CAGCTTGCACAGTGAAAGGATC 60.095 50.000 21.20 6.37 0.00 3.36
5030 5625 1.884579 CAGCTTGCACAGTGAAAGGAT 59.115 47.619 21.20 0.10 0.00 3.24
5031 5626 1.311859 CAGCTTGCACAGTGAAAGGA 58.688 50.000 21.20 0.00 0.00 3.36
5032 5627 0.318445 GCAGCTTGCACAGTGAAAGG 60.318 55.000 21.20 8.08 44.26 3.11
5033 5628 3.174790 GCAGCTTGCACAGTGAAAG 57.825 52.632 16.36 16.36 44.26 2.62
5036 5631 2.613660 ACTGGCAGCTTGCACAGTGA 62.614 55.000 15.89 0.00 45.92 3.41
5037 5632 2.191513 ACTGGCAGCTTGCACAGTG 61.192 57.895 15.89 0.00 45.92 3.66
5144 5739 2.799126 TGGACACTGTCAAAACCACT 57.201 45.000 11.34 0.00 33.68 4.00
5197 5795 0.036875 AGTGGAAAGGAGAAAGGCCG 59.963 55.000 0.00 0.00 0.00 6.13
5232 5830 4.093998 CACTGTCATTCATCTCGGAAAAGG 59.906 45.833 0.00 0.00 0.00 3.11
5237 5835 1.827344 AGCACTGTCATTCATCTCGGA 59.173 47.619 0.00 0.00 0.00 4.55
5239 5837 4.152938 TGAAAAGCACTGTCATTCATCTCG 59.847 41.667 0.00 0.00 0.00 4.04


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.