Multiple sequence alignment - TraesCS1B01G168800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G168800 chr1B 100.000 7260 0 0 1 7260 299660122 299652863 0.000000e+00 13407.0
1 TraesCS1B01G168800 chr1B 86.813 91 9 2 37 125 579600323 579600234 1.670000e-16 99.0
2 TraesCS1B01G168800 chr1B 95.082 61 3 0 6811 6871 37625507 37625447 6.000000e-16 97.1
3 TraesCS1B01G168800 chr1D 95.897 6434 181 30 124 6519 204057710 204051322 0.000000e+00 10342.0
4 TraesCS1B01G168800 chr1D 97.561 164 4 0 6626 6789 204051325 204051162 1.540000e-71 281.0
5 TraesCS1B01G168800 chr1D 93.478 184 11 1 6882 7064 204051138 204050955 9.280000e-69 272.0
6 TraesCS1B01G168800 chr1D 92.697 178 10 1 7086 7260 204050962 204050785 3.360000e-63 254.0
7 TraesCS1B01G168800 chr1A 96.586 5858 131 23 976 6789 259074870 259069038 0.000000e+00 9646.0
8 TraesCS1B01G168800 chr1A 92.935 184 12 1 6882 7064 259069014 259068831 4.320000e-67 267.0
9 TraesCS1B01G168800 chr1A 94.937 158 5 1 7086 7240 259068838 259068681 2.020000e-60 244.0
10 TraesCS1B01G168800 chr5A 77.310 1234 257 18 3358 4578 671444511 671445734 0.000000e+00 706.0
11 TraesCS1B01G168800 chr5A 82.840 507 83 4 234 738 481211635 481211131 1.110000e-122 451.0
12 TraesCS1B01G168800 chr5A 96.774 31 1 0 2940 2970 455457887 455457857 1.300000e-02 52.8
13 TraesCS1B01G168800 chr4D 77.254 1231 263 13 3358 4578 490129122 490130345 0.000000e+00 706.0
14 TraesCS1B01G168800 chr4B 76.867 1232 266 15 3358 4578 629948887 629950110 0.000000e+00 678.0
15 TraesCS1B01G168800 chr2B 83.607 488 76 4 234 719 600489594 600489109 8.590000e-124 455.0
16 TraesCS1B01G168800 chr6B 82.643 507 84 4 234 738 144905135 144904631 5.170000e-121 446.0
17 TraesCS1B01G168800 chrUn 96.721 61 2 0 6811 6871 36920686 36920746 1.290000e-17 102.0
18 TraesCS1B01G168800 chrUn 96.721 61 2 0 6811 6871 37006062 37006122 1.290000e-17 102.0
19 TraesCS1B01G168800 chrUn 96.721 61 2 0 6811 6871 196709947 196709887 1.290000e-17 102.0
20 TraesCS1B01G168800 chrUn 96.721 61 2 0 6811 6871 242183251 242183191 1.290000e-17 102.0
21 TraesCS1B01G168800 chrUn 95.082 61 3 0 6811 6871 37367191 37367131 6.000000e-16 97.1
22 TraesCS1B01G168800 chrUn 95.082 61 3 0 6811 6871 38258283 38258343 6.000000e-16 97.1
23 TraesCS1B01G168800 chr3D 95.082 61 3 0 6811 6871 482504863 482504923 6.000000e-16 97.1
24 TraesCS1B01G168800 chr3A 95.082 61 3 0 6811 6871 552419033 552419093 6.000000e-16 97.1
25 TraesCS1B01G168800 chr2D 90.769 65 6 0 64 128 621179709 621179645 3.610000e-13 87.9
26 TraesCS1B01G168800 chr4A 84.706 85 11 2 39 121 448314799 448314883 4.670000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G168800 chr1B 299652863 299660122 7259 True 13407.000000 13407 100.000000 1 7260 1 chr1B.!!$R2 7259
1 TraesCS1B01G168800 chr1D 204050785 204057710 6925 True 2787.250000 10342 94.908250 124 7260 4 chr1D.!!$R1 7136
2 TraesCS1B01G168800 chr1A 259068681 259074870 6189 True 3385.666667 9646 94.819333 976 7240 3 chr1A.!!$R1 6264
3 TraesCS1B01G168800 chr5A 671444511 671445734 1223 False 706.000000 706 77.310000 3358 4578 1 chr5A.!!$F1 1220
4 TraesCS1B01G168800 chr5A 481211131 481211635 504 True 451.000000 451 82.840000 234 738 1 chr5A.!!$R2 504
5 TraesCS1B01G168800 chr4D 490129122 490130345 1223 False 706.000000 706 77.254000 3358 4578 1 chr4D.!!$F1 1220
6 TraesCS1B01G168800 chr4B 629948887 629950110 1223 False 678.000000 678 76.867000 3358 4578 1 chr4B.!!$F1 1220
7 TraesCS1B01G168800 chr6B 144904631 144905135 504 True 446.000000 446 82.643000 234 738 1 chr6B.!!$R1 504

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.036765 ACACAATACGGACGTGGCAT 60.037 50.0 7.73 0.0 34.91 4.40 F
58 59 0.325933 TGCTGATGTGGCTTACTGCT 59.674 50.0 0.00 0.0 42.39 4.24 F
743 747 0.468226 TCCACGCTCACTTCTGGTTT 59.532 50.0 0.00 0.0 0.00 3.27 F
1975 1997 0.269173 AGGATGGAGGGTAGGGAAGG 59.731 60.0 0.00 0.0 0.00 3.46 F
2069 2091 0.528466 CAGATGACACCATCCGGTCG 60.528 60.0 0.00 0.0 44.71 4.79 F
3271 3294 0.594602 GCATGCACACTCACACATGT 59.405 50.0 14.21 0.0 41.51 3.21 F
4353 4379 2.769095 GGTGAAGTTAGAGGCTGGATCT 59.231 50.0 0.00 0.0 0.00 2.75 F
5420 5452 0.404426 AGCTCCAGTTGGGGTTTACC 59.596 55.0 0.00 0.0 38.19 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1080 1085 0.034477 GGCTCCCGAATCCAGGAAAA 60.034 55.000 0.00 0.0 0.00 2.29 R
1522 1544 0.107165 AGGAAAGAATACGGCCAGCC 60.107 55.000 2.24 0.0 0.00 4.85 R
2375 2397 0.392461 AAGGAAAATAGCAGCCGCGA 60.392 50.000 8.23 0.0 45.49 5.87 R
3423 3446 1.293498 AGGTACTGCTGCTTCCACG 59.707 57.895 0.00 0.0 37.18 4.94 R
3585 3608 3.453717 TGGTCTCTCCATCAAGATTCCAG 59.546 47.826 0.00 0.0 41.93 3.86 R
4413 4439 1.673760 CATCAACAACGGTTTCAGCG 58.326 50.000 0.00 0.0 45.69 5.18 R
5271 5303 0.967380 AACCTGTAGCATGCCAAGCC 60.967 55.000 15.66 0.0 0.00 4.35 R
6826 6985 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.0 34.43 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.994779 GGTAACACAATACGGACGTGG 59.005 52.381 7.73 0.00 34.91 4.94
21 22 1.391144 GTAACACAATACGGACGTGGC 59.609 52.381 7.73 0.00 34.91 5.01
22 23 0.249953 AACACAATACGGACGTGGCA 60.250 50.000 7.73 0.00 34.91 4.92
23 24 0.036765 ACACAATACGGACGTGGCAT 60.037 50.000 7.73 0.00 34.91 4.40
24 25 1.083489 CACAATACGGACGTGGCATT 58.917 50.000 7.73 0.00 0.00 3.56
25 26 2.272678 CACAATACGGACGTGGCATTA 58.727 47.619 7.73 0.00 0.00 1.90
26 27 2.869801 CACAATACGGACGTGGCATTAT 59.130 45.455 7.73 0.00 0.00 1.28
27 28 2.869801 ACAATACGGACGTGGCATTATG 59.130 45.455 7.73 0.00 0.00 1.90
28 29 1.508632 ATACGGACGTGGCATTATGC 58.491 50.000 8.93 8.93 44.08 3.14
52 53 2.806608 CAAAGTTGCTGATGTGGCTT 57.193 45.000 0.00 0.00 0.00 4.35
53 54 3.921119 CAAAGTTGCTGATGTGGCTTA 57.079 42.857 0.00 0.00 0.00 3.09
54 55 3.568538 CAAAGTTGCTGATGTGGCTTAC 58.431 45.455 0.00 0.00 0.00 2.34
55 56 2.867109 AGTTGCTGATGTGGCTTACT 57.133 45.000 0.00 0.00 0.00 2.24
56 57 2.430465 AGTTGCTGATGTGGCTTACTG 58.570 47.619 0.00 0.00 0.00 2.74
57 58 1.135575 GTTGCTGATGTGGCTTACTGC 60.136 52.381 0.00 0.00 41.94 4.40
58 59 0.325933 TGCTGATGTGGCTTACTGCT 59.674 50.000 0.00 0.00 42.39 4.24
59 60 0.731417 GCTGATGTGGCTTACTGCTG 59.269 55.000 0.00 0.00 42.39 4.41
60 61 1.676916 GCTGATGTGGCTTACTGCTGA 60.677 52.381 0.00 0.00 42.39 4.26
61 62 2.277969 CTGATGTGGCTTACTGCTGAG 58.722 52.381 0.00 0.00 42.39 3.35
62 63 1.625315 TGATGTGGCTTACTGCTGAGT 59.375 47.619 0.00 0.00 42.39 3.41
63 64 2.038952 TGATGTGGCTTACTGCTGAGTT 59.961 45.455 0.00 0.00 42.39 3.01
64 65 1.882912 TGTGGCTTACTGCTGAGTTG 58.117 50.000 0.00 0.00 42.39 3.16
65 66 1.160137 GTGGCTTACTGCTGAGTTGG 58.840 55.000 0.00 0.00 42.39 3.77
66 67 1.055849 TGGCTTACTGCTGAGTTGGA 58.944 50.000 0.00 0.00 42.39 3.53
67 68 1.630369 TGGCTTACTGCTGAGTTGGAT 59.370 47.619 0.00 0.00 42.39 3.41
68 69 2.837591 TGGCTTACTGCTGAGTTGGATA 59.162 45.455 0.00 0.00 42.39 2.59
69 70 3.118629 TGGCTTACTGCTGAGTTGGATAG 60.119 47.826 0.00 0.00 42.39 2.08
70 71 2.869192 GCTTACTGCTGAGTTGGATAGC 59.131 50.000 0.00 0.00 38.95 2.97
71 72 3.431486 GCTTACTGCTGAGTTGGATAGCT 60.431 47.826 0.00 0.00 38.25 3.32
72 73 4.764172 CTTACTGCTGAGTTGGATAGCTT 58.236 43.478 0.00 0.00 38.25 3.74
73 74 2.983229 ACTGCTGAGTTGGATAGCTTG 58.017 47.619 0.00 0.00 38.25 4.01
74 75 1.669779 CTGCTGAGTTGGATAGCTTGC 59.330 52.381 0.00 0.00 38.25 4.01
75 76 1.003464 TGCTGAGTTGGATAGCTTGCA 59.997 47.619 0.00 0.00 38.25 4.08
76 77 2.295885 GCTGAGTTGGATAGCTTGCAT 58.704 47.619 0.00 0.00 34.70 3.96
77 78 2.033049 GCTGAGTTGGATAGCTTGCATG 59.967 50.000 0.00 0.00 34.70 4.06
78 79 3.276857 CTGAGTTGGATAGCTTGCATGT 58.723 45.455 0.00 0.00 0.00 3.21
79 80 3.273434 TGAGTTGGATAGCTTGCATGTC 58.727 45.455 0.00 0.00 0.00 3.06
80 81 3.273434 GAGTTGGATAGCTTGCATGTCA 58.727 45.455 0.00 0.00 0.00 3.58
81 82 3.689347 AGTTGGATAGCTTGCATGTCAA 58.311 40.909 0.00 0.00 0.00 3.18
97 98 8.984891 TGCATGTCAAGAAAAATAAGGTAATG 57.015 30.769 0.00 0.00 0.00 1.90
98 99 8.034215 TGCATGTCAAGAAAAATAAGGTAATGG 58.966 33.333 0.00 0.00 0.00 3.16
99 100 8.250332 GCATGTCAAGAAAAATAAGGTAATGGA 58.750 33.333 0.00 0.00 0.00 3.41
100 101 9.793252 CATGTCAAGAAAAATAAGGTAATGGAG 57.207 33.333 0.00 0.00 0.00 3.86
101 102 9.753674 ATGTCAAGAAAAATAAGGTAATGGAGA 57.246 29.630 0.00 0.00 0.00 3.71
102 103 9.753674 TGTCAAGAAAAATAAGGTAATGGAGAT 57.246 29.630 0.00 0.00 0.00 2.75
104 105 9.973661 TCAAGAAAAATAAGGTAATGGAGATGA 57.026 29.630 0.00 0.00 0.00 2.92
107 108 9.981460 AGAAAAATAAGGTAATGGAGATGAACT 57.019 29.630 0.00 0.00 0.00 3.01
115 116 8.568617 AGGTAATGGAGATGAACTATTTAGGT 57.431 34.615 0.00 0.00 0.00 3.08
116 117 9.670442 AGGTAATGGAGATGAACTATTTAGGTA 57.330 33.333 0.00 0.00 0.00 3.08
117 118 9.708092 GGTAATGGAGATGAACTATTTAGGTAC 57.292 37.037 0.00 0.00 0.00 3.34
185 187 3.133946 GACCCAAAAGGGCGCAAA 58.866 55.556 10.83 0.00 41.63 3.68
228 230 3.231160 CGGGCGACACATTTAACTTTTC 58.769 45.455 0.00 0.00 0.00 2.29
237 239 7.203255 ACACATTTAACTTTTCTAGAGGTGC 57.797 36.000 0.00 0.00 0.00 5.01
261 264 6.531594 GCTACCAAGCTTTATTCAATGGAAAC 59.468 38.462 0.00 0.00 45.85 2.78
289 292 9.982651 GATAGTGGCAAGTACATAAAATCTAGA 57.017 33.333 0.00 0.00 0.00 2.43
360 363 1.153168 GCTAAATCGCCAGCCTCCA 60.153 57.895 0.00 0.00 0.00 3.86
361 364 0.536006 GCTAAATCGCCAGCCTCCAT 60.536 55.000 0.00 0.00 0.00 3.41
427 431 7.814264 ATTGGTCATCATCTCTTTTATGTCC 57.186 36.000 0.00 0.00 0.00 4.02
480 484 6.963322 AGGAGCTCTTTAGATTGTTAACCAT 58.037 36.000 14.64 0.00 0.00 3.55
500 504 8.738645 AACCATTGTTAACCAAATTTTTAGCA 57.261 26.923 2.48 0.00 36.44 3.49
539 543 3.809832 AGTGTAGATCATGCGCCAAATAC 59.190 43.478 4.18 1.21 0.00 1.89
552 556 4.436183 GCGCCAAATACAGAACTTCTCTTC 60.436 45.833 0.00 0.00 29.07 2.87
598 602 4.553351 CGGTTGTATCATGTCATGCATCAC 60.553 45.833 8.03 0.00 35.19 3.06
611 615 1.008875 GCATCACGAGTGAAGACGCA 61.009 55.000 10.15 0.00 43.58 5.24
624 628 1.802553 AGACGCACCCCCATATACTT 58.197 50.000 0.00 0.00 0.00 2.24
666 670 2.225792 GCATAGGAGCCCCTGTCTT 58.774 57.895 0.00 0.00 44.15 3.01
692 696 0.478072 TTCCCACACCAGCATCAACT 59.522 50.000 0.00 0.00 0.00 3.16
698 702 3.366679 CCACACCAGCATCAACTTTCATC 60.367 47.826 0.00 0.00 0.00 2.92
733 737 1.205655 CAGAGGAGATTTCCACGCTCA 59.794 52.381 4.89 0.00 46.64 4.26
743 747 0.468226 TCCACGCTCACTTCTGGTTT 59.532 50.000 0.00 0.00 0.00 3.27
794 798 9.166173 TCTTTATTGTTCATAGTCCACATGAAG 57.834 33.333 0.00 0.00 41.73 3.02
796 800 9.952030 TTTATTGTTCATAGTCCACATGAAGTA 57.048 29.630 0.00 0.00 41.73 2.24
797 801 7.849804 ATTGTTCATAGTCCACATGAAGTAC 57.150 36.000 0.00 0.00 41.73 2.73
835 839 2.910688 AGATGAGTCAACCACACGTT 57.089 45.000 0.00 0.00 33.90 3.99
838 842 2.228138 TGAGTCAACCACACGTTACC 57.772 50.000 0.00 0.00 31.77 2.85
839 843 1.481363 TGAGTCAACCACACGTTACCA 59.519 47.619 0.00 0.00 31.77 3.25
840 844 2.093606 TGAGTCAACCACACGTTACCAA 60.094 45.455 0.00 0.00 31.77 3.67
841 845 2.937799 GAGTCAACCACACGTTACCAAA 59.062 45.455 0.00 0.00 31.77 3.28
842 846 2.940410 AGTCAACCACACGTTACCAAAG 59.060 45.455 0.00 0.00 31.77 2.77
843 847 2.679336 GTCAACCACACGTTACCAAAGT 59.321 45.455 0.00 0.00 31.77 2.66
844 848 3.870419 GTCAACCACACGTTACCAAAGTA 59.130 43.478 0.00 0.00 31.77 2.24
845 849 3.870419 TCAACCACACGTTACCAAAGTAC 59.130 43.478 0.00 0.00 31.77 2.73
846 850 3.825143 ACCACACGTTACCAAAGTACT 57.175 42.857 0.00 0.00 0.00 2.73
847 851 3.721035 ACCACACGTTACCAAAGTACTC 58.279 45.455 0.00 0.00 0.00 2.59
848 852 3.062042 CCACACGTTACCAAAGTACTCC 58.938 50.000 0.00 0.00 0.00 3.85
849 853 3.243975 CCACACGTTACCAAAGTACTCCT 60.244 47.826 0.00 0.00 0.00 3.69
850 854 4.374399 CACACGTTACCAAAGTACTCCTT 58.626 43.478 0.00 0.00 33.79 3.36
851 855 4.812626 CACACGTTACCAAAGTACTCCTTT 59.187 41.667 0.00 0.00 44.30 3.11
974 979 1.273606 CGAGTCACACCAAGGTCATCT 59.726 52.381 0.00 0.00 0.00 2.90
1074 1079 3.559731 GGGTAGATTCCCGTCCCC 58.440 66.667 0.00 0.00 37.93 4.81
1075 1080 2.145399 GGGTAGATTCCCGTCCCCC 61.145 68.421 0.00 0.00 37.93 5.40
1076 1081 1.074699 GGTAGATTCCCGTCCCCCT 60.075 63.158 0.00 0.00 0.00 4.79
1077 1082 1.120184 GGTAGATTCCCGTCCCCCTC 61.120 65.000 0.00 0.00 0.00 4.30
1078 1083 1.120184 GTAGATTCCCGTCCCCCTCC 61.120 65.000 0.00 0.00 0.00 4.30
1079 1084 2.322252 TAGATTCCCGTCCCCCTCCC 62.322 65.000 0.00 0.00 0.00 4.30
1080 1085 3.707189 ATTCCCGTCCCCCTCCCT 61.707 66.667 0.00 0.00 0.00 4.20
1081 1086 3.283467 ATTCCCGTCCCCCTCCCTT 62.283 63.158 0.00 0.00 0.00 3.95
1295 1316 1.682257 GCAGGAGGAAAGGTGAGCT 59.318 57.895 0.00 0.00 0.00 4.09
1350 1371 2.045340 CTTGGCCCCGGTCGATTT 60.045 61.111 0.00 0.00 0.00 2.17
1396 1417 9.378597 CTTTATTCTTTGCGATGTATCTTGATG 57.621 33.333 0.00 0.00 0.00 3.07
1420 1441 2.227968 CTTTCGCTTTCTCACCGCCG 62.228 60.000 0.00 0.00 0.00 6.46
1432 1453 2.951458 CCGCCGGGTTTTCAAGAC 59.049 61.111 2.18 0.00 0.00 3.01
1434 1455 1.599797 CGCCGGGTTTTCAAGACCT 60.600 57.895 2.18 0.00 37.34 3.85
1435 1456 1.852067 CGCCGGGTTTTCAAGACCTG 61.852 60.000 2.18 0.00 42.15 4.00
1436 1457 0.536460 GCCGGGTTTTCAAGACCTGA 60.536 55.000 7.54 0.00 44.70 3.86
1437 1458 1.523758 CCGGGTTTTCAAGACCTGAG 58.476 55.000 7.54 0.00 44.70 3.35
1480 1502 2.205022 TCTTGCATTCAGTTGGGGAG 57.795 50.000 0.00 0.00 0.00 4.30
1519 1541 0.536687 CGGTAGATAGGGCTCCGTCA 60.537 60.000 0.00 0.00 36.99 4.35
1521 1543 1.479021 GGTAGATAGGGCTCCGTCAGT 60.479 57.143 0.00 0.00 0.00 3.41
1522 1544 1.609555 GTAGATAGGGCTCCGTCAGTG 59.390 57.143 0.00 0.00 0.00 3.66
1523 1545 0.757188 AGATAGGGCTCCGTCAGTGG 60.757 60.000 0.00 0.00 0.00 4.00
1524 1546 2.370647 GATAGGGCTCCGTCAGTGGC 62.371 65.000 0.00 0.00 0.00 5.01
1632 1654 3.291101 TTCTTCGGAACTCGGGGCG 62.291 63.158 0.00 0.00 39.77 6.13
1685 1707 1.745489 GGCGGCCGAATCTTGTCTT 60.745 57.895 33.48 0.00 0.00 3.01
1710 1732 7.657336 TGTTCTTCATGGGTAAGTTGATTTTC 58.343 34.615 0.00 0.00 0.00 2.29
1715 1737 9.546428 CTTCATGGGTAAGTTGATTTTCTTTTT 57.454 29.630 0.00 0.00 0.00 1.94
1716 1738 9.541143 TTCATGGGTAAGTTGATTTTCTTTTTC 57.459 29.630 0.00 0.00 0.00 2.29
1717 1739 8.923270 TCATGGGTAAGTTGATTTTCTTTTTCT 58.077 29.630 0.00 0.00 0.00 2.52
1718 1740 8.981647 CATGGGTAAGTTGATTTTCTTTTTCTG 58.018 33.333 0.00 0.00 0.00 3.02
1804 1826 1.783711 GTATCGCTGAGATGTGCTTCG 59.216 52.381 4.03 0.00 40.40 3.79
1805 1827 0.457443 ATCGCTGAGATGTGCTTCGA 59.543 50.000 0.00 0.00 38.36 3.71
1879 1901 9.698309 TGATTATTTTGGTTTTATCTTTTCGCA 57.302 25.926 0.00 0.00 0.00 5.10
1895 1917 8.500837 TCTTTTCGCACAATGTTTAGTAATTG 57.499 30.769 0.00 0.00 39.26 2.32
1906 1928 6.252967 TGTTTAGTAATTGTGGACATGCTG 57.747 37.500 0.00 0.00 0.00 4.41
1939 1961 3.199946 GGTAATTGTGTGGAGAGATGGGA 59.800 47.826 0.00 0.00 0.00 4.37
1971 1993 1.074167 AGCAGGATGGAGGGTAGGG 60.074 63.158 0.00 0.00 35.86 3.53
1975 1997 0.269173 AGGATGGAGGGTAGGGAAGG 59.731 60.000 0.00 0.00 0.00 3.46
1976 1998 0.768609 GGATGGAGGGTAGGGAAGGG 60.769 65.000 0.00 0.00 0.00 3.95
1982 2004 2.654204 GGGTAGGGAAGGGAGGGGA 61.654 68.421 0.00 0.00 0.00 4.81
2000 2022 6.440647 GGAGGGGAAGATTAAGGAATTTTGTT 59.559 38.462 0.00 0.00 0.00 2.83
2033 2055 1.676967 GGAGTGCCTTTGCTCTGGG 60.677 63.158 0.00 0.00 41.19 4.45
2069 2091 0.528466 CAGATGACACCATCCGGTCG 60.528 60.000 0.00 0.00 44.71 4.79
2375 2397 9.431887 TCTAGTTTGCTTGATAGTTTCGTTAAT 57.568 29.630 0.00 0.00 0.00 1.40
2464 2486 9.769093 AGTAATTTTATTAACAGCTAGTTTGCG 57.231 29.630 6.82 0.00 41.64 4.85
2558 2580 0.905357 ATGCCGAGCTACCTGTTTCT 59.095 50.000 0.00 0.00 0.00 2.52
2569 2591 6.534634 AGCTACCTGTTTCTGTGAAGTTAAT 58.465 36.000 0.00 0.00 0.00 1.40
2659 2681 6.521151 AACCATCTGCTTTATCCTTTTCTG 57.479 37.500 0.00 0.00 0.00 3.02
2757 2779 7.148523 CCCAAGCAATTTAAATGAGAAGCTTTC 60.149 37.037 16.00 0.94 38.86 2.62
2911 2934 8.621532 TTTACTGATTGCATTCTTGACTAACT 57.378 30.769 9.81 0.00 0.00 2.24
2912 2935 6.734104 ACTGATTGCATTCTTGACTAACTC 57.266 37.500 9.81 0.00 0.00 3.01
3195 3218 5.415077 GCCATATATCTCAAAGCAAGAGCAT 59.585 40.000 0.00 0.00 45.49 3.79
3226 3249 2.156917 CGGAAAGTTCAAAGGTACCCC 58.843 52.381 8.74 0.00 0.00 4.95
3271 3294 0.594602 GCATGCACACTCACACATGT 59.405 50.000 14.21 0.00 41.51 3.21
3298 3321 5.615325 GCACAATTGCTTGGCATTTTAGTTC 60.615 40.000 5.05 0.00 46.17 3.01
3423 3446 8.666573 CAAGAGTGCAGAATGATATTGGATATC 58.333 37.037 0.00 0.00 39.69 1.63
4353 4379 2.769095 GGTGAAGTTAGAGGCTGGATCT 59.231 50.000 0.00 0.00 0.00 2.75
4413 4439 2.992543 TGCACAAAAACTGTTTGCTGAC 59.007 40.909 17.60 11.56 35.47 3.51
4494 4520 0.881118 TGCGAACCAAAGCCAGAATC 59.119 50.000 0.00 0.00 0.00 2.52
4641 4667 8.827832 TCCAAATCTAATTGAGGAATCACAAT 57.172 30.769 0.00 0.00 36.09 2.71
4654 4680 9.246670 TGAGGAATCACAATTTCTTGTTCATAT 57.753 29.630 0.00 0.00 43.05 1.78
4858 4888 6.347725 GCTGATGTGATAGTTGTTTCGTTCTT 60.348 38.462 0.00 0.00 0.00 2.52
4877 4907 6.490534 GTTCTTCTTTGTGAGAACAGGAAAG 58.509 40.000 10.42 0.00 39.44 2.62
4915 4945 2.877335 CGACAGGCTAACCAACTAGAC 58.123 52.381 0.00 0.00 39.06 2.59
4950 4981 2.551459 GCTGCCAGTAATATGCCTTCAG 59.449 50.000 0.00 0.00 0.00 3.02
4959 4990 6.375455 CAGTAATATGCCTTCAGTTCCAAGTT 59.625 38.462 0.00 0.00 0.00 2.66
5111 5143 7.493367 AGTAGCATTTAGAAGGTCACTATGTC 58.507 38.462 0.00 0.00 0.00 3.06
5121 5153 7.227156 AGAAGGTCACTATGTCTGACATTTTT 58.773 34.615 26.56 10.05 41.44 1.94
5271 5303 6.624423 AGCAACTAATTGTTATTCTGCCTTG 58.376 36.000 0.00 0.00 38.17 3.61
5294 5326 3.131046 GCTTGGCATGCTACAGGTTAATT 59.869 43.478 18.92 0.00 0.00 1.40
5420 5452 0.404426 AGCTCCAGTTGGGGTTTACC 59.596 55.000 0.00 0.00 38.19 2.85
5506 5538 6.040504 ACGTATATGTCATTCTCTAGGCACAA 59.959 38.462 0.00 0.00 0.00 3.33
5516 5548 8.587608 TCATTCTCTAGGCACAATTTTCATTTT 58.412 29.630 0.00 0.00 0.00 1.82
5551 5583 6.881065 CCATGTATAGATGGGGTCATTGTAAG 59.119 42.308 19.08 0.00 39.53 2.34
5629 5661 9.774742 CAGGTTTTTGCACTATAAGAAAGATAC 57.225 33.333 0.00 0.00 0.00 2.24
5637 5669 7.921214 TGCACTATAAGAAAGATACTTCCTTCG 59.079 37.037 0.00 0.00 29.26 3.79
5675 5707 9.435688 GCAATTTTATTTCCAGGAAAACTATGT 57.564 29.630 18.88 3.78 35.11 2.29
5763 5795 6.817765 AACATGTTCCAAGTTTGATATCGT 57.182 33.333 4.92 0.00 0.00 3.73
5876 5908 6.135454 TCATATGGCATGGTTTAATCTTGGT 58.865 36.000 10.98 0.00 0.00 3.67
5987 6019 7.989741 CCTGTAGAACCTTTCAGATGACATATT 59.010 37.037 0.00 0.00 0.00 1.28
6050 6082 5.583495 TCAAATTTGTTTCACTTACACCGG 58.417 37.500 17.47 0.00 0.00 5.28
6096 6128 6.482641 CAGAAATGACCTACATGATTGAGAGG 59.517 42.308 0.00 0.00 39.39 3.69
6183 6215 0.593128 ACAGCAAGAACAATGCCGTC 59.407 50.000 0.00 0.00 44.91 4.79
6216 6248 7.900782 TTTACTATGAGCTTTTGTGACCTAC 57.099 36.000 0.00 0.00 0.00 3.18
6226 6259 5.389516 GCTTTTGTGACCTACATGTTAGTCG 60.390 44.000 17.96 8.00 39.48 4.18
6283 6316 8.135529 AGCAAATTGTCTCAAGTTTTAGGTAAC 58.864 33.333 0.00 0.00 0.00 2.50
6285 6318 8.339714 CAAATTGTCTCAAGTTTTAGGTAACGA 58.660 33.333 0.00 0.00 46.39 3.85
6294 6327 9.724839 TCAAGTTTTAGGTAACGAATTTTTCTG 57.275 29.630 0.00 0.00 46.39 3.02
6336 6369 0.038744 AGGTGCAAGATGTTCCTGGG 59.961 55.000 0.00 0.00 0.00 4.45
6342 6375 1.867595 AAGATGTTCCTGGGGGCCTG 61.868 60.000 0.84 0.00 0.00 4.85
6343 6376 2.535317 ATGTTCCTGGGGGCCTGT 60.535 61.111 0.84 0.00 0.00 4.00
6344 6377 2.558380 GATGTTCCTGGGGGCCTGTC 62.558 65.000 0.84 0.00 0.00 3.51
6417 6460 9.628500 AATTTCCAAGAGTCTAAGTTACTGTTT 57.372 29.630 0.00 0.00 28.75 2.83
6422 6465 7.360438 CCAAGAGTCTAAGTTACTGTTTGCATC 60.360 40.741 0.00 0.00 28.75 3.91
6480 6523 2.228822 GTCTTAATGTTGTGTGGCAGGG 59.771 50.000 0.00 0.00 0.00 4.45
6525 6568 3.665544 CCAAAGTGGTTGCAGTTGG 57.334 52.632 0.00 0.00 35.74 3.77
6526 6569 1.110442 CCAAAGTGGTTGCAGTTGGA 58.890 50.000 0.00 0.00 35.74 3.53
6527 6570 1.688197 CCAAAGTGGTTGCAGTTGGAT 59.312 47.619 0.00 0.00 35.74 3.41
6528 6571 2.546373 CCAAAGTGGTTGCAGTTGGATG 60.546 50.000 0.00 0.00 35.74 3.51
6529 6572 1.331214 AAGTGGTTGCAGTTGGATGG 58.669 50.000 0.00 0.00 0.00 3.51
6530 6573 0.478072 AGTGGTTGCAGTTGGATGGA 59.522 50.000 0.00 0.00 0.00 3.41
6531 6574 1.076024 AGTGGTTGCAGTTGGATGGAT 59.924 47.619 0.00 0.00 0.00 3.41
6532 6575 1.895131 GTGGTTGCAGTTGGATGGATT 59.105 47.619 0.00 0.00 0.00 3.01
6533 6576 1.894466 TGGTTGCAGTTGGATGGATTG 59.106 47.619 0.00 0.00 0.00 2.67
6534 6577 2.170166 GGTTGCAGTTGGATGGATTGA 58.830 47.619 0.00 0.00 0.00 2.57
6535 6578 2.562298 GGTTGCAGTTGGATGGATTGAA 59.438 45.455 0.00 0.00 0.00 2.69
6536 6579 3.578688 GTTGCAGTTGGATGGATTGAAC 58.421 45.455 0.00 0.00 0.00 3.18
6537 6580 2.874014 TGCAGTTGGATGGATTGAACA 58.126 42.857 0.00 0.00 0.00 3.18
6538 6581 3.433343 TGCAGTTGGATGGATTGAACAT 58.567 40.909 0.00 0.00 0.00 2.71
6539 6582 3.193903 TGCAGTTGGATGGATTGAACATG 59.806 43.478 0.00 0.00 0.00 3.21
6540 6583 3.429822 GCAGTTGGATGGATTGAACATGG 60.430 47.826 0.00 0.00 0.00 3.66
6541 6584 3.765511 CAGTTGGATGGATTGAACATGGT 59.234 43.478 0.00 0.00 0.00 3.55
6542 6585 4.221262 CAGTTGGATGGATTGAACATGGTT 59.779 41.667 0.00 0.00 0.00 3.67
6543 6586 4.221262 AGTTGGATGGATTGAACATGGTTG 59.779 41.667 0.00 0.00 0.00 3.77
6544 6587 3.777087 TGGATGGATTGAACATGGTTGT 58.223 40.909 0.00 0.00 37.82 3.32
6545 6588 3.763360 TGGATGGATTGAACATGGTTGTC 59.237 43.478 0.00 0.00 34.06 3.18
6546 6589 3.763360 GGATGGATTGAACATGGTTGTCA 59.237 43.478 0.00 0.00 34.06 3.58
6547 6590 4.220382 GGATGGATTGAACATGGTTGTCAA 59.780 41.667 0.00 1.83 34.06 3.18
6548 6591 4.852134 TGGATTGAACATGGTTGTCAAG 57.148 40.909 0.00 0.00 34.06 3.02
6549 6592 3.005684 TGGATTGAACATGGTTGTCAAGC 59.994 43.478 7.84 7.84 34.06 4.01
6550 6593 3.005684 GGATTGAACATGGTTGTCAAGCA 59.994 43.478 19.08 19.08 43.83 3.91
6552 6595 4.669206 TTGAACATGGTTGTCAAGCATT 57.331 36.364 24.16 14.05 46.65 3.56
6553 6596 5.781210 TTGAACATGGTTGTCAAGCATTA 57.219 34.783 24.16 10.81 46.65 1.90
6554 6597 5.781210 TGAACATGGTTGTCAAGCATTAA 57.219 34.783 24.16 5.89 46.65 1.40
6555 6598 5.771469 TGAACATGGTTGTCAAGCATTAAG 58.229 37.500 24.16 16.71 46.65 1.85
6556 6599 5.534278 TGAACATGGTTGTCAAGCATTAAGA 59.466 36.000 24.16 9.16 46.65 2.10
6557 6600 6.209192 TGAACATGGTTGTCAAGCATTAAGAT 59.791 34.615 24.16 10.76 46.65 2.40
6558 6601 7.392953 TGAACATGGTTGTCAAGCATTAAGATA 59.607 33.333 24.16 9.04 46.65 1.98
6559 6602 7.325660 ACATGGTTGTCAAGCATTAAGATAG 57.674 36.000 24.16 14.90 46.65 2.08
6560 6603 5.818136 TGGTTGTCAAGCATTAAGATAGC 57.182 39.130 13.35 0.00 33.29 2.97
6561 6604 4.640201 TGGTTGTCAAGCATTAAGATAGCC 59.360 41.667 13.35 0.00 33.29 3.93
6562 6605 4.884164 GGTTGTCAAGCATTAAGATAGCCT 59.116 41.667 9.88 0.00 0.00 4.58
6563 6606 5.008118 GGTTGTCAAGCATTAAGATAGCCTC 59.992 44.000 9.88 0.00 0.00 4.70
6564 6607 5.357742 TGTCAAGCATTAAGATAGCCTCA 57.642 39.130 0.00 0.00 0.00 3.86
6565 6608 5.744171 TGTCAAGCATTAAGATAGCCTCAA 58.256 37.500 0.00 0.00 0.00 3.02
6566 6609 6.179756 TGTCAAGCATTAAGATAGCCTCAAA 58.820 36.000 0.00 0.00 0.00 2.69
6567 6610 6.094048 TGTCAAGCATTAAGATAGCCTCAAAC 59.906 38.462 0.00 0.00 0.00 2.93
6568 6611 6.094048 GTCAAGCATTAAGATAGCCTCAAACA 59.906 38.462 0.00 0.00 0.00 2.83
6569 6612 6.317140 TCAAGCATTAAGATAGCCTCAAACAG 59.683 38.462 0.00 0.00 0.00 3.16
6570 6613 5.749462 AGCATTAAGATAGCCTCAAACAGT 58.251 37.500 0.00 0.00 0.00 3.55
6571 6614 6.889198 AGCATTAAGATAGCCTCAAACAGTA 58.111 36.000 0.00 0.00 0.00 2.74
6572 6615 7.512992 AGCATTAAGATAGCCTCAAACAGTAT 58.487 34.615 0.00 0.00 0.00 2.12
6573 6616 7.995488 AGCATTAAGATAGCCTCAAACAGTATT 59.005 33.333 0.00 0.00 0.00 1.89
6574 6617 8.286097 GCATTAAGATAGCCTCAAACAGTATTC 58.714 37.037 0.00 0.00 0.00 1.75
6575 6618 9.553064 CATTAAGATAGCCTCAAACAGTATTCT 57.447 33.333 0.00 0.00 0.00 2.40
6577 6620 7.856145 AAGATAGCCTCAAACAGTATTCTTG 57.144 36.000 0.00 0.00 0.00 3.02
6578 6621 6.951971 AGATAGCCTCAAACAGTATTCTTGT 58.048 36.000 0.00 0.00 0.00 3.16
6579 6622 8.079211 AGATAGCCTCAAACAGTATTCTTGTA 57.921 34.615 0.00 0.00 0.00 2.41
6580 6623 8.200792 AGATAGCCTCAAACAGTATTCTTGTAG 58.799 37.037 0.00 0.00 0.00 2.74
6581 6624 6.360370 AGCCTCAAACAGTATTCTTGTAGA 57.640 37.500 0.00 0.00 0.00 2.59
6582 6625 6.166982 AGCCTCAAACAGTATTCTTGTAGAC 58.833 40.000 0.00 0.00 0.00 2.59
6583 6626 6.014156 AGCCTCAAACAGTATTCTTGTAGACT 60.014 38.462 0.00 0.00 0.00 3.24
6584 6627 6.651225 GCCTCAAACAGTATTCTTGTAGACTT 59.349 38.462 0.00 0.00 0.00 3.01
6585 6628 7.173390 GCCTCAAACAGTATTCTTGTAGACTTT 59.827 37.037 0.00 0.00 0.00 2.66
6586 6629 9.057089 CCTCAAACAGTATTCTTGTAGACTTTT 57.943 33.333 0.00 0.00 0.00 2.27
6588 6631 9.832445 TCAAACAGTATTCTTGTAGACTTTTCT 57.168 29.630 0.00 0.00 35.66 2.52
6591 6634 8.608844 ACAGTATTCTTGTAGACTTTTCTTGG 57.391 34.615 0.00 0.00 32.75 3.61
6592 6635 8.429641 ACAGTATTCTTGTAGACTTTTCTTGGA 58.570 33.333 0.00 0.00 32.75 3.53
6593 6636 9.442047 CAGTATTCTTGTAGACTTTTCTTGGAT 57.558 33.333 0.00 0.00 32.75 3.41
6594 6637 9.442047 AGTATTCTTGTAGACTTTTCTTGGATG 57.558 33.333 0.00 0.00 32.75 3.51
6595 6638 6.560253 TTCTTGTAGACTTTTCTTGGATGC 57.440 37.500 0.00 0.00 32.75 3.91
6596 6639 5.003804 TCTTGTAGACTTTTCTTGGATGCC 58.996 41.667 0.00 0.00 32.75 4.40
6597 6640 4.640771 TGTAGACTTTTCTTGGATGCCT 57.359 40.909 0.00 0.00 32.75 4.75
6598 6641 4.579869 TGTAGACTTTTCTTGGATGCCTC 58.420 43.478 0.00 0.00 32.75 4.70
6599 6642 3.078891 AGACTTTTCTTGGATGCCTCC 57.921 47.619 0.22 0.22 42.45 4.30
6600 6643 2.095461 GACTTTTCTTGGATGCCTCCC 58.905 52.381 5.49 0.00 41.29 4.30
6601 6644 1.713078 ACTTTTCTTGGATGCCTCCCT 59.287 47.619 5.49 0.00 41.29 4.20
6602 6645 2.291217 ACTTTTCTTGGATGCCTCCCTC 60.291 50.000 5.49 0.00 41.29 4.30
6603 6646 1.371467 TTTCTTGGATGCCTCCCTCA 58.629 50.000 5.49 0.00 41.29 3.86
6604 6647 0.620556 TTCTTGGATGCCTCCCTCAC 59.379 55.000 5.49 0.00 41.29 3.51
6605 6648 0.547471 TCTTGGATGCCTCCCTCACA 60.547 55.000 5.49 0.00 41.29 3.58
6606 6649 0.549950 CTTGGATGCCTCCCTCACAT 59.450 55.000 5.49 0.00 41.29 3.21
6607 6650 0.256752 TTGGATGCCTCCCTCACATG 59.743 55.000 5.49 0.00 41.29 3.21
6608 6651 1.150081 GGATGCCTCCCTCACATGG 59.850 63.158 0.00 0.00 35.28 3.66
6609 6652 1.348008 GGATGCCTCCCTCACATGGA 61.348 60.000 0.00 0.00 35.28 3.41
6610 6653 0.548031 GATGCCTCCCTCACATGGAA 59.452 55.000 0.00 0.00 0.00 3.53
6611 6654 0.549950 ATGCCTCCCTCACATGGAAG 59.450 55.000 0.00 0.00 0.00 3.46
6612 6655 0.547471 TGCCTCCCTCACATGGAAGA 60.547 55.000 0.00 0.00 0.00 2.87
6613 6656 0.620556 GCCTCCCTCACATGGAAGAA 59.379 55.000 0.00 0.00 0.00 2.52
6614 6657 1.407989 GCCTCCCTCACATGGAAGAAG 60.408 57.143 0.00 0.00 0.00 2.85
6615 6658 2.191400 CCTCCCTCACATGGAAGAAGA 58.809 52.381 0.00 0.00 0.00 2.87
6616 6659 2.093235 CCTCCCTCACATGGAAGAAGAC 60.093 54.545 0.00 0.00 0.00 3.01
6617 6660 1.909302 TCCCTCACATGGAAGAAGACC 59.091 52.381 0.00 0.00 0.00 3.85
6618 6661 1.065126 CCCTCACATGGAAGAAGACCC 60.065 57.143 0.00 0.00 0.00 4.46
6619 6662 1.912043 CCTCACATGGAAGAAGACCCT 59.088 52.381 0.00 0.00 0.00 4.34
6620 6663 2.307098 CCTCACATGGAAGAAGACCCTT 59.693 50.000 0.00 0.00 0.00 3.95
6621 6664 3.604582 CTCACATGGAAGAAGACCCTTC 58.395 50.000 0.00 0.00 41.26 3.46
6622 6665 2.978978 TCACATGGAAGAAGACCCTTCA 59.021 45.455 9.10 0.00 43.19 3.02
6623 6666 3.077359 CACATGGAAGAAGACCCTTCAC 58.923 50.000 9.10 3.33 43.19 3.18
6624 6667 2.982488 ACATGGAAGAAGACCCTTCACT 59.018 45.455 9.10 0.00 43.19 3.41
6625 6668 3.244700 ACATGGAAGAAGACCCTTCACTG 60.245 47.826 9.10 0.00 43.19 3.66
6626 6669 2.408565 TGGAAGAAGACCCTTCACTGT 58.591 47.619 9.10 0.00 43.19 3.55
6627 6670 2.777692 TGGAAGAAGACCCTTCACTGTT 59.222 45.455 9.10 0.00 43.19 3.16
6628 6671 3.142174 GGAAGAAGACCCTTCACTGTTG 58.858 50.000 9.10 0.00 43.19 3.33
6662 6821 4.022464 CTTAGGTAGCAGTCTCTTGTCG 57.978 50.000 0.00 0.00 0.00 4.35
6712 6871 3.211045 GTGGTTTTGCTCAAGACTGGTA 58.789 45.455 3.79 0.00 0.00 3.25
6759 6918 2.089980 AGGCAGTTCAGCAATGATGAC 58.910 47.619 0.00 0.00 35.83 3.06
6789 6948 9.668497 AAAGATTCCCTTGTGACTTTATACTAC 57.332 33.333 0.00 0.00 34.79 2.73
6790 6949 7.793036 AGATTCCCTTGTGACTTTATACTACC 58.207 38.462 0.00 0.00 0.00 3.18
6792 6951 6.786967 TCCCTTGTGACTTTATACTACCTC 57.213 41.667 0.00 0.00 0.00 3.85
6793 6952 6.500336 TCCCTTGTGACTTTATACTACCTCT 58.500 40.000 0.00 0.00 0.00 3.69
6794 6953 6.380274 TCCCTTGTGACTTTATACTACCTCTG 59.620 42.308 0.00 0.00 0.00 3.35
6795 6954 6.154706 CCCTTGTGACTTTATACTACCTCTGT 59.845 42.308 0.00 0.00 0.00 3.41
6796 6955 7.310485 CCCTTGTGACTTTATACTACCTCTGTT 60.310 40.741 0.00 0.00 0.00 3.16
6798 6957 9.141400 CTTGTGACTTTATACTACCTCTGTTTC 57.859 37.037 0.00 0.00 0.00 2.78
6799 6958 8.185506 TGTGACTTTATACTACCTCTGTTTCA 57.814 34.615 0.00 0.00 0.00 2.69
6800 6959 8.812972 TGTGACTTTATACTACCTCTGTTTCAT 58.187 33.333 0.00 0.00 0.00 2.57
6810 6969 8.362464 ACTACCTCTGTTTCATAATGTAGTGA 57.638 34.615 0.00 0.00 37.03 3.41
6812 6971 6.407202 ACCTCTGTTTCATAATGTAGTGACC 58.593 40.000 0.00 0.00 0.00 4.02
6813 6972 6.013725 ACCTCTGTTTCATAATGTAGTGACCA 60.014 38.462 0.00 0.00 0.00 4.02
6814 6973 6.878923 CCTCTGTTTCATAATGTAGTGACCAA 59.121 38.462 0.00 0.00 0.00 3.67
6815 6974 7.148407 CCTCTGTTTCATAATGTAGTGACCAAC 60.148 40.741 0.00 0.00 0.00 3.77
6816 6975 6.367695 TCTGTTTCATAATGTAGTGACCAACG 59.632 38.462 0.00 0.00 0.00 4.10
6817 6976 6.224584 TGTTTCATAATGTAGTGACCAACGA 58.775 36.000 0.00 0.00 0.00 3.85
6818 6977 6.367695 TGTTTCATAATGTAGTGACCAACGAG 59.632 38.462 0.00 0.00 0.00 4.18
6819 6978 5.907866 TCATAATGTAGTGACCAACGAGA 57.092 39.130 0.00 0.00 0.00 4.04
6820 6979 5.647589 TCATAATGTAGTGACCAACGAGAC 58.352 41.667 0.00 0.00 0.00 3.36
6821 6980 3.314541 AATGTAGTGACCAACGAGACC 57.685 47.619 0.00 0.00 0.00 3.85
6822 6981 0.594602 TGTAGTGACCAACGAGACCG 59.405 55.000 0.00 0.00 42.50 4.79
6823 6982 0.877071 GTAGTGACCAACGAGACCGA 59.123 55.000 0.00 0.00 39.50 4.69
6824 6983 1.471684 GTAGTGACCAACGAGACCGAT 59.528 52.381 0.00 0.00 39.50 4.18
6825 6984 0.966920 AGTGACCAACGAGACCGATT 59.033 50.000 0.00 0.00 39.50 3.34
6826 6985 1.068474 GTGACCAACGAGACCGATTG 58.932 55.000 0.00 0.00 39.50 2.67
6827 6986 0.669318 TGACCAACGAGACCGATTGC 60.669 55.000 0.00 0.00 39.50 3.56
6828 6987 1.683790 GACCAACGAGACCGATTGCG 61.684 60.000 0.00 0.00 39.50 4.85
6853 7012 6.618287 CGGGAGCAAAAATTATATCACAGA 57.382 37.500 0.00 0.00 0.00 3.41
6854 7013 7.026631 CGGGAGCAAAAATTATATCACAGAA 57.973 36.000 0.00 0.00 0.00 3.02
6855 7014 7.651808 CGGGAGCAAAAATTATATCACAGAAT 58.348 34.615 0.00 0.00 0.00 2.40
6856 7015 8.137437 CGGGAGCAAAAATTATATCACAGAATT 58.863 33.333 0.00 0.00 29.21 2.17
6857 7016 9.468532 GGGAGCAAAAATTATATCACAGAATTC 57.531 33.333 0.00 0.00 27.89 2.17
6929 7088 4.741676 CAGATCAAAGGTTTTTGCACTGAC 59.258 41.667 14.61 0.00 42.51 3.51
6930 7089 4.646492 AGATCAAAGGTTTTTGCACTGACT 59.354 37.500 0.00 0.00 42.71 3.41
6931 7090 4.108699 TCAAAGGTTTTTGCACTGACTG 57.891 40.909 0.00 0.00 42.71 3.51
6934 7093 5.184096 TCAAAGGTTTTTGCACTGACTGTTA 59.816 36.000 0.00 0.00 42.71 2.41
6935 7094 4.900635 AGGTTTTTGCACTGACTGTTAG 57.099 40.909 0.00 0.00 0.00 2.34
6936 7095 4.523083 AGGTTTTTGCACTGACTGTTAGA 58.477 39.130 6.59 0.00 0.00 2.10
6937 7096 5.133221 AGGTTTTTGCACTGACTGTTAGAT 58.867 37.500 6.59 0.00 0.00 1.98
6938 7097 5.009010 AGGTTTTTGCACTGACTGTTAGATG 59.991 40.000 6.59 2.79 0.00 2.90
6950 7110 5.163447 TGACTGTTAGATGGTTATCCTTCGG 60.163 44.000 1.21 0.00 41.15 4.30
6952 7112 3.389983 TGTTAGATGGTTATCCTTCGGGG 59.610 47.826 1.21 0.00 41.15 5.73
6963 7123 0.965439 CCTTCGGGGTTTGAAATGCA 59.035 50.000 0.00 0.00 0.00 3.96
7021 7181 2.175931 TGAAAACCCTTAACCTGCTCCA 59.824 45.455 0.00 0.00 0.00 3.86
7035 7195 3.495193 CTGCTCCACGTCAATTCATTTG 58.505 45.455 0.00 0.00 36.61 2.32
7183 7346 2.404559 TGTGTTTAGTGACCTCCACCT 58.595 47.619 0.00 0.00 46.87 4.00
7208 7371 8.165239 TGACAACTAACTTAGAACATGCATTT 57.835 30.769 0.00 0.00 0.00 2.32
7212 7375 7.667043 ACTAACTTAGAACATGCATTTCGAA 57.333 32.000 0.00 6.71 0.00 3.71
7254 7417 1.941812 CAACCTCAACGTGCTGACC 59.058 57.895 0.00 0.00 0.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.994779 CCACGTCCGTATTGTGTTACC 59.005 52.381 0.00 0.00 31.75 2.85
1 2 1.391144 GCCACGTCCGTATTGTGTTAC 59.609 52.381 0.00 0.00 31.75 2.50
2 3 1.000618 TGCCACGTCCGTATTGTGTTA 59.999 47.619 0.00 0.00 31.75 2.41
3 4 0.249953 TGCCACGTCCGTATTGTGTT 60.250 50.000 0.00 0.00 31.75 3.32
4 5 0.036765 ATGCCACGTCCGTATTGTGT 60.037 50.000 0.00 0.00 31.75 3.72
5 6 1.083489 AATGCCACGTCCGTATTGTG 58.917 50.000 0.00 0.00 0.00 3.33
6 7 2.676632 TAATGCCACGTCCGTATTGT 57.323 45.000 5.93 0.00 0.00 2.71
7 8 2.349438 GCATAATGCCACGTCCGTATTG 60.349 50.000 5.93 0.00 37.42 1.90
8 9 1.871039 GCATAATGCCACGTCCGTATT 59.129 47.619 0.00 0.00 37.42 1.89
9 10 1.202592 TGCATAATGCCACGTCCGTAT 60.203 47.619 0.00 0.00 44.23 3.06
10 11 0.175989 TGCATAATGCCACGTCCGTA 59.824 50.000 0.00 0.00 44.23 4.02
11 12 0.675208 TTGCATAATGCCACGTCCGT 60.675 50.000 0.00 0.00 44.23 4.69
12 13 0.027979 CTTGCATAATGCCACGTCCG 59.972 55.000 0.00 0.00 44.23 4.79
13 14 0.381801 CCTTGCATAATGCCACGTCC 59.618 55.000 0.00 0.00 44.23 4.79
14 15 0.248621 GCCTTGCATAATGCCACGTC 60.249 55.000 0.00 0.00 44.23 4.34
15 16 0.964860 TGCCTTGCATAATGCCACGT 60.965 50.000 0.00 0.00 44.23 4.49
16 17 0.173029 TTGCCTTGCATAATGCCACG 59.827 50.000 0.00 0.00 44.23 4.94
17 18 2.273557 CTTTGCCTTGCATAATGCCAC 58.726 47.619 0.00 0.00 44.23 5.01
18 19 1.901159 ACTTTGCCTTGCATAATGCCA 59.099 42.857 0.00 0.00 44.23 4.92
19 20 2.674357 CAACTTTGCCTTGCATAATGCC 59.326 45.455 0.00 0.00 44.23 4.40
33 34 2.806608 AAGCCACATCAGCAACTTTG 57.193 45.000 0.00 0.00 0.00 2.77
34 35 3.254166 CAGTAAGCCACATCAGCAACTTT 59.746 43.478 0.00 0.00 29.40 2.66
35 36 2.816087 CAGTAAGCCACATCAGCAACTT 59.184 45.455 0.00 0.00 29.40 2.66
36 37 2.430465 CAGTAAGCCACATCAGCAACT 58.570 47.619 0.00 0.00 31.28 3.16
37 38 1.135575 GCAGTAAGCCACATCAGCAAC 60.136 52.381 0.00 0.00 37.23 4.17
38 39 1.167851 GCAGTAAGCCACATCAGCAA 58.832 50.000 0.00 0.00 37.23 3.91
39 40 2.858622 GCAGTAAGCCACATCAGCA 58.141 52.632 0.00 0.00 37.23 4.41
49 50 2.869192 GCTATCCAACTCAGCAGTAAGC 59.131 50.000 0.00 0.00 46.19 3.09
50 51 4.399004 AGCTATCCAACTCAGCAGTAAG 57.601 45.455 0.00 0.00 37.78 2.34
51 52 4.507710 CAAGCTATCCAACTCAGCAGTAA 58.492 43.478 0.00 0.00 37.78 2.24
52 53 3.679917 GCAAGCTATCCAACTCAGCAGTA 60.680 47.826 0.00 0.00 37.78 2.74
53 54 2.938756 GCAAGCTATCCAACTCAGCAGT 60.939 50.000 0.00 0.00 37.78 4.40
54 55 1.669779 GCAAGCTATCCAACTCAGCAG 59.330 52.381 0.00 0.00 37.78 4.24
55 56 1.003464 TGCAAGCTATCCAACTCAGCA 59.997 47.619 0.00 0.00 37.78 4.41
56 57 1.742761 TGCAAGCTATCCAACTCAGC 58.257 50.000 0.00 0.00 35.49 4.26
57 58 3.276857 ACATGCAAGCTATCCAACTCAG 58.723 45.455 0.00 0.00 0.00 3.35
58 59 3.273434 GACATGCAAGCTATCCAACTCA 58.727 45.455 0.00 0.00 0.00 3.41
59 60 3.273434 TGACATGCAAGCTATCCAACTC 58.727 45.455 0.00 0.00 0.00 3.01
60 61 3.354948 TGACATGCAAGCTATCCAACT 57.645 42.857 0.00 0.00 0.00 3.16
61 62 4.025015 CTTGACATGCAAGCTATCCAAC 57.975 45.455 14.20 0.00 46.67 3.77
71 72 9.421806 CATTACCTTATTTTTCTTGACATGCAA 57.578 29.630 0.00 0.00 34.73 4.08
72 73 8.034215 CCATTACCTTATTTTTCTTGACATGCA 58.966 33.333 0.00 0.00 0.00 3.96
73 74 8.250332 TCCATTACCTTATTTTTCTTGACATGC 58.750 33.333 0.00 0.00 0.00 4.06
74 75 9.793252 CTCCATTACCTTATTTTTCTTGACATG 57.207 33.333 0.00 0.00 0.00 3.21
75 76 9.753674 TCTCCATTACCTTATTTTTCTTGACAT 57.246 29.630 0.00 0.00 0.00 3.06
76 77 9.753674 ATCTCCATTACCTTATTTTTCTTGACA 57.246 29.630 0.00 0.00 0.00 3.58
78 79 9.973661 TCATCTCCATTACCTTATTTTTCTTGA 57.026 29.630 0.00 0.00 0.00 3.02
81 82 9.981460 AGTTCATCTCCATTACCTTATTTTTCT 57.019 29.630 0.00 0.00 0.00 2.52
89 90 9.004231 ACCTAAATAGTTCATCTCCATTACCTT 57.996 33.333 0.00 0.00 0.00 3.50
90 91 8.568617 ACCTAAATAGTTCATCTCCATTACCT 57.431 34.615 0.00 0.00 0.00 3.08
91 92 9.708092 GTACCTAAATAGTTCATCTCCATTACC 57.292 37.037 0.00 0.00 0.00 2.85
112 113 8.984112 TTTTTGGGCCTATATCTATAGTACCT 57.016 34.615 4.53 0.00 35.09 3.08
142 143 6.916360 ATAGAATGCCTGAAAACTTTTGGA 57.084 33.333 0.00 0.00 0.00 3.53
151 152 5.645056 TGGGTCATATAGAATGCCTGAAA 57.355 39.130 0.00 0.00 0.00 2.69
153 154 5.645056 TTTGGGTCATATAGAATGCCTGA 57.355 39.130 0.00 0.00 0.00 3.86
156 157 5.712152 CCTTTTGGGTCATATAGAATGCC 57.288 43.478 0.00 0.00 35.46 4.40
185 187 3.521126 GTGGCTCATATATCCCTGATGGT 59.479 47.826 0.00 0.00 34.77 3.55
213 215 6.998673 AGCACCTCTAGAAAAGTTAAATGTGT 59.001 34.615 0.00 0.00 0.00 3.72
237 239 7.756722 CAGTTTCCATTGAATAAAGCTTGGTAG 59.243 37.037 0.00 0.00 0.00 3.18
261 264 8.668510 AGATTTTATGTACTTGCCACTATCAG 57.331 34.615 0.00 0.00 0.00 2.90
289 292 4.276058 CCATTTGTGGCTTTCAAATCCT 57.724 40.909 10.88 0.00 41.58 3.24
352 355 6.357579 AGAGAGAACATATAATGGAGGCTG 57.642 41.667 0.00 0.00 33.60 4.85
360 363 9.438228 CATGCATGAGAAGAGAGAACATATAAT 57.562 33.333 22.59 0.00 0.00 1.28
361 364 8.645110 TCATGCATGAGAAGAGAGAACATATAA 58.355 33.333 25.42 0.00 32.11 0.98
427 431 4.999950 GGTAGATGCAGTCCAATTATCCAG 59.000 45.833 0.00 0.00 0.00 3.86
496 500 8.962884 ACACTTGAATCACATACATATTGCTA 57.037 30.769 0.00 0.00 0.00 3.49
497 501 7.870509 ACACTTGAATCACATACATATTGCT 57.129 32.000 0.00 0.00 0.00 3.91
506 510 6.421801 CGCATGATCTACACTTGAATCACATA 59.578 38.462 0.00 0.00 0.00 2.29
539 543 5.936956 AGCTATTGTTGGAAGAGAAGTTCTG 59.063 40.000 10.90 0.00 35.91 3.02
552 556 5.694006 CGAAGATCCTAGAAGCTATTGTTGG 59.306 44.000 0.00 0.00 0.00 3.77
598 602 2.432628 GGGGTGCGTCTTCACTCG 60.433 66.667 0.00 0.00 38.31 4.18
611 615 2.326428 CAGTCCGAAGTATATGGGGGT 58.674 52.381 0.00 0.00 0.00 4.95
624 628 1.376543 GTCTATCGTGACCAGTCCGA 58.623 55.000 11.81 11.81 36.96 4.55
666 670 0.036732 GCTGGTGTGGGAAGACATGA 59.963 55.000 0.00 0.00 0.00 3.07
692 696 7.119709 TCTGGACGGATGTATAAAGATGAAA 57.880 36.000 0.00 0.00 0.00 2.69
698 702 4.827835 TCTCCTCTGGACGGATGTATAAAG 59.172 45.833 0.00 0.00 0.00 1.85
768 772 9.166173 CTTCATGTGGACTATGAACAATAAAGA 57.834 33.333 0.00 0.00 39.05 2.52
796 800 7.602753 TCATCTTATGATCCGATTTGTATCGT 58.397 34.615 6.77 0.00 42.07 3.73
797 801 7.757173 ACTCATCTTATGATCCGATTTGTATCG 59.243 37.037 0.00 0.00 44.42 2.92
808 812 5.525378 GTGTGGTTGACTCATCTTATGATCC 59.475 44.000 0.00 0.00 38.85 3.36
816 820 2.910688 AACGTGTGGTTGACTCATCT 57.089 45.000 0.00 0.00 37.50 2.90
840 844 3.400255 GACCGAAAGCAAAGGAGTACTT 58.600 45.455 0.00 0.00 42.52 2.24
841 845 2.289506 GGACCGAAAGCAAAGGAGTACT 60.290 50.000 0.00 0.00 0.00 2.73
842 846 2.074576 GGACCGAAAGCAAAGGAGTAC 58.925 52.381 0.00 0.00 0.00 2.73
843 847 1.337447 CGGACCGAAAGCAAAGGAGTA 60.337 52.381 8.64 0.00 0.00 2.59
844 848 0.602905 CGGACCGAAAGCAAAGGAGT 60.603 55.000 8.64 0.00 0.00 3.85
845 849 0.602905 ACGGACCGAAAGCAAAGGAG 60.603 55.000 23.38 0.00 0.00 3.69
846 850 0.179040 AACGGACCGAAAGCAAAGGA 60.179 50.000 23.38 0.00 0.00 3.36
847 851 0.666374 AAACGGACCGAAAGCAAAGG 59.334 50.000 23.38 0.00 0.00 3.11
848 852 3.824414 ATAAACGGACCGAAAGCAAAG 57.176 42.857 23.38 0.00 0.00 2.77
849 853 5.451039 GTTTATAAACGGACCGAAAGCAAA 58.549 37.500 23.38 11.67 0.00 3.68
850 854 5.033326 GTTTATAAACGGACCGAAAGCAA 57.967 39.130 23.38 5.91 0.00 3.91
851 855 4.666928 GTTTATAAACGGACCGAAAGCA 57.333 40.909 23.38 0.67 0.00 3.91
880 884 2.233605 CTGACACGGTTCGGCCCATA 62.234 60.000 0.00 0.00 0.00 2.74
944 948 2.338984 GTGACTCGTGCGGACCTT 59.661 61.111 0.00 0.00 0.00 3.50
950 954 2.310233 CCTTGGTGTGACTCGTGCG 61.310 63.158 0.00 0.00 0.00 5.34
1071 1076 0.926220 ATCCAGGAAAAGGGAGGGGG 60.926 60.000 0.00 0.00 36.45 5.40
1072 1077 1.010795 AATCCAGGAAAAGGGAGGGG 58.989 55.000 0.00 0.00 36.45 4.79
1073 1078 1.408822 CGAATCCAGGAAAAGGGAGGG 60.409 57.143 0.00 0.00 36.45 4.30
1074 1079 1.408822 CCGAATCCAGGAAAAGGGAGG 60.409 57.143 0.00 0.00 36.45 4.30
1075 1080 1.408822 CCCGAATCCAGGAAAAGGGAG 60.409 57.143 17.50 0.00 39.71 4.30
1076 1081 0.623723 CCCGAATCCAGGAAAAGGGA 59.376 55.000 17.50 0.00 39.71 4.20
1077 1082 0.623723 TCCCGAATCCAGGAAAAGGG 59.376 55.000 16.66 16.66 38.73 3.95
1078 1083 2.019156 GCTCCCGAATCCAGGAAAAGG 61.019 57.143 0.00 0.00 0.00 3.11
1079 1084 1.383523 GCTCCCGAATCCAGGAAAAG 58.616 55.000 0.00 0.00 0.00 2.27
1080 1085 0.034477 GGCTCCCGAATCCAGGAAAA 60.034 55.000 0.00 0.00 0.00 2.29
1081 1086 0.914417 AGGCTCCCGAATCCAGGAAA 60.914 55.000 0.00 0.00 0.00 3.13
1350 1371 9.660180 AATAAAGCAAAAAGGTGTAAAAAGACA 57.340 25.926 0.00 0.00 0.00 3.41
1396 1417 1.195674 GGTGAGAAAGCGAAAGAGTGC 59.804 52.381 0.00 0.00 0.00 4.40
1420 1441 1.547901 CCCCTCAGGTCTTGAAAACCC 60.548 57.143 0.00 0.00 37.52 4.11
1427 1448 0.980231 CCTCCTCCCCTCAGGTCTTG 60.980 65.000 0.00 0.00 36.75 3.02
1428 1449 1.394151 CCTCCTCCCCTCAGGTCTT 59.606 63.158 0.00 0.00 36.75 3.01
1429 1450 1.456518 AACCTCCTCCCCTCAGGTCT 61.457 60.000 0.00 0.00 39.80 3.85
1430 1451 1.081277 AACCTCCTCCCCTCAGGTC 59.919 63.158 0.00 0.00 39.80 3.85
1431 1452 1.229658 CAACCTCCTCCCCTCAGGT 60.230 63.158 0.00 0.00 42.72 4.00
1432 1453 2.674220 GCAACCTCCTCCCCTCAGG 61.674 68.421 0.00 0.00 34.40 3.86
1434 1455 3.003173 CGCAACCTCCTCCCCTCA 61.003 66.667 0.00 0.00 0.00 3.86
1435 1456 2.683933 TCGCAACCTCCTCCCCTC 60.684 66.667 0.00 0.00 0.00 4.30
1436 1457 2.685380 CTCGCAACCTCCTCCCCT 60.685 66.667 0.00 0.00 0.00 4.79
1437 1458 4.475135 GCTCGCAACCTCCTCCCC 62.475 72.222 0.00 0.00 0.00 4.81
1480 1502 1.471153 GCCTACCAAGACCTAGCGAAC 60.471 57.143 0.00 0.00 0.00 3.95
1519 1541 0.328258 AAAGAATACGGCCAGCCACT 59.672 50.000 9.78 0.00 35.37 4.00
1521 1543 0.393808 GGAAAGAATACGGCCAGCCA 60.394 55.000 9.78 0.00 35.37 4.75
1522 1544 0.107165 AGGAAAGAATACGGCCAGCC 60.107 55.000 2.24 0.00 0.00 4.85
1523 1545 1.017387 CAGGAAAGAATACGGCCAGC 58.983 55.000 2.24 0.00 0.00 4.85
1524 1546 1.668419 CCAGGAAAGAATACGGCCAG 58.332 55.000 2.24 0.00 0.00 4.85
1632 1654 3.319405 TCGAGATATCTGAGCAAACTCCC 59.681 47.826 10.74 0.00 42.74 4.30
1685 1707 7.505585 AGAAAATCAACTTACCCATGAAGAACA 59.494 33.333 0.00 0.00 0.00 3.18
1718 1740 5.305902 TGGGGGATAAGGAGTTTTTGAAAAC 59.694 40.000 10.55 10.55 46.54 2.43
1722 1744 3.660669 ACTGGGGGATAAGGAGTTTTTGA 59.339 43.478 0.00 0.00 0.00 2.69
1723 1745 4.047627 ACTGGGGGATAAGGAGTTTTTG 57.952 45.455 0.00 0.00 0.00 2.44
1724 1746 4.107311 TGAACTGGGGGATAAGGAGTTTTT 59.893 41.667 0.00 0.00 0.00 1.94
1725 1747 3.660669 TGAACTGGGGGATAAGGAGTTTT 59.339 43.478 0.00 0.00 0.00 2.43
1804 1826 7.435192 GCTACCATAACAACCAATTTAGCAATC 59.565 37.037 0.00 0.00 31.67 2.67
1805 1827 7.093552 TGCTACCATAACAACCAATTTAGCAAT 60.094 33.333 0.00 0.00 37.16 3.56
1879 1901 7.039784 AGCATGTCCACAATTACTAAACATTGT 60.040 33.333 0.00 0.00 43.06 2.71
1906 1928 7.174253 TCTCCACACAATTACCTAACATTCAAC 59.826 37.037 0.00 0.00 0.00 3.18
1939 1961 4.322273 CCATCCTGCTGTATCATATGTCGT 60.322 45.833 1.90 0.00 0.00 4.34
1971 1993 3.394645 TCCTTAATCTTCCCCTCCCTTC 58.605 50.000 0.00 0.00 0.00 3.46
1975 1997 5.958380 ACAAAATTCCTTAATCTTCCCCTCC 59.042 40.000 0.00 0.00 0.00 4.30
1976 1998 7.482169 AACAAAATTCCTTAATCTTCCCCTC 57.518 36.000 0.00 0.00 0.00 4.30
1982 2004 5.399013 CGCCGAACAAAATTCCTTAATCTT 58.601 37.500 0.00 0.00 0.00 2.40
2000 2022 3.755526 CTCCATTGCCATCCGCCGA 62.756 63.158 0.00 0.00 36.24 5.54
2033 2055 2.753446 GCCCCTTTCAGCTGCTCC 60.753 66.667 9.47 0.00 0.00 4.70
2069 2091 3.559238 TTGGTAAACGTAGAGTCCGAC 57.441 47.619 0.00 0.00 0.00 4.79
2369 2391 0.859232 AATAGCAGCCGCGATTAACG 59.141 50.000 8.23 0.00 41.08 3.18
2375 2397 0.392461 AAGGAAAATAGCAGCCGCGA 60.392 50.000 8.23 0.00 45.49 5.87
2464 2486 6.033937 GGAACCACGATTAACTTAACTACGAC 59.966 42.308 0.00 0.00 0.00 4.34
2539 2561 0.905357 AGAAACAGGTAGCTCGGCAT 59.095 50.000 0.00 0.00 0.00 4.40
2872 2895 2.824936 TCAGTAAATCCACCGACGGTAA 59.175 45.455 21.25 11.61 32.11 2.85
2911 2934 8.993404 TTTATGATCATGTATTGAATGTGGGA 57.007 30.769 18.72 0.00 38.03 4.37
2912 2935 9.634163 CATTTATGATCATGTATTGAATGTGGG 57.366 33.333 18.72 0.00 38.03 4.61
3195 3218 6.072508 CCTTTGAACTTTCCGAGATCATGAAA 60.073 38.462 0.00 0.01 37.08 2.69
3226 3249 4.184079 TCATGTGTGTGACAGAGAGATG 57.816 45.455 1.07 1.07 38.23 2.90
3323 3346 1.401552 GCATGACAGCGGAAATGCTAA 59.598 47.619 16.50 0.00 45.23 3.09
3344 3367 7.857569 TGAAGTTATGCTTACAGTAAACACAC 58.142 34.615 0.00 0.33 37.59 3.82
3423 3446 1.293498 AGGTACTGCTGCTTCCACG 59.707 57.895 0.00 0.00 37.18 4.94
3585 3608 3.453717 TGGTCTCTCCATCAAGATTCCAG 59.546 47.826 0.00 0.00 41.93 3.86
3756 3779 6.200878 TCAACCCTCCTCAGATTAAACTTT 57.799 37.500 0.00 0.00 0.00 2.66
4353 4379 4.706842 AAGAAGCCAACTCCTTAACTCA 57.293 40.909 0.00 0.00 0.00 3.41
4413 4439 1.673760 CATCAACAACGGTTTCAGCG 58.326 50.000 0.00 0.00 45.69 5.18
4665 4691 8.200792 AGCAACATGGAAACTTTAATTTGTGTA 58.799 29.630 0.00 0.00 0.00 2.90
4666 4692 7.047271 AGCAACATGGAAACTTTAATTTGTGT 58.953 30.769 0.00 0.00 0.00 3.72
4667 4693 7.481275 AGCAACATGGAAACTTTAATTTGTG 57.519 32.000 0.00 0.00 0.00 3.33
4858 4888 4.503714 ACCTTTCCTGTTCTCACAAAGA 57.496 40.909 0.00 0.00 30.36 2.52
4986 5018 2.238898 ACCCAACAACTAGTCCTATGCC 59.761 50.000 0.00 0.00 0.00 4.40
5111 5143 9.778993 CCTGTAGAAATCATGTAAAAATGTCAG 57.221 33.333 0.00 0.00 0.00 3.51
5121 5153 3.431626 CGCCACCCTGTAGAAATCATGTA 60.432 47.826 0.00 0.00 0.00 2.29
5271 5303 0.967380 AACCTGTAGCATGCCAAGCC 60.967 55.000 15.66 0.00 0.00 4.35
5395 5427 1.272147 ACCCCAACTGGAGCTTTGATC 60.272 52.381 0.00 0.00 37.39 2.92
5451 5483 6.090483 TCAAAGGTGAAACAAACAAACTCA 57.910 33.333 0.00 0.00 39.98 3.41
5486 5518 7.828717 TGAAAATTGTGCCTAGAGAATGACATA 59.171 33.333 0.00 0.00 0.00 2.29
5516 5548 7.294720 ACCCCATCTATACATGGTTAGATTGAA 59.705 37.037 13.92 0.00 41.84 2.69
5629 5661 7.772332 ATTGCAGTAAGTAATACGAAGGAAG 57.228 36.000 0.00 0.00 39.62 3.46
5675 5707 5.063204 TCTTTTGGAAGATCTTTCGCTTCA 58.937 37.500 9.87 0.00 41.69 3.02
5763 5795 6.404403 CCAAGTTGTCGTAGAATAGTAGCAGA 60.404 42.308 1.45 0.00 39.69 4.26
5876 5908 5.017490 CCACCTTCCTCTTTGTAGAGTAGA 58.983 45.833 0.00 0.00 45.40 2.59
5987 6019 6.321821 ACAATTTCTATAGCCCCTGTACAA 57.678 37.500 0.00 0.00 0.00 2.41
6050 6082 8.603242 TTCTGGAACTTTGTAATCTACTTCAC 57.397 34.615 0.00 0.00 0.00 3.18
6096 6128 4.568152 AAACATTGCCCGATGCTATTAC 57.432 40.909 0.00 0.00 42.00 1.89
6168 6200 1.200020 GGAAGGACGGCATTGTTCTTG 59.800 52.381 0.00 0.00 37.81 3.02
6183 6215 7.093771 ACAAAAGCTCATAGTAAATTGGGAAGG 60.094 37.037 0.00 0.00 0.00 3.46
6263 6296 8.441312 AATTCGTTACCTAAAACTTGAGACAA 57.559 30.769 0.00 0.00 0.00 3.18
6319 6352 0.967380 CCCCCAGGAACATCTTGCAC 60.967 60.000 0.00 0.00 33.47 4.57
6336 6369 1.119684 AACAAAAACAGGACAGGCCC 58.880 50.000 0.00 0.00 37.37 5.80
6342 6375 5.945155 TGTACTTGACAACAAAAACAGGAC 58.055 37.500 0.00 0.00 34.15 3.85
6343 6376 5.708230 ACTGTACTTGACAACAAAAACAGGA 59.292 36.000 18.97 0.00 44.30 3.86
6344 6377 5.949735 ACTGTACTTGACAACAAAAACAGG 58.050 37.500 18.97 0.00 44.30 4.00
6411 6454 2.071778 ACCTTGGTGATGCAAACAGT 57.928 45.000 0.00 0.00 0.00 3.55
6417 6460 2.655090 TTCAGAACCTTGGTGATGCA 57.345 45.000 0.00 0.00 0.00 3.96
6422 6465 4.053295 CAGCAAATTTCAGAACCTTGGTG 58.947 43.478 15.93 15.93 38.62 4.17
6480 6523 2.017049 GCCACCAGTATCCATCACAAC 58.983 52.381 0.00 0.00 0.00 3.32
6519 6562 3.765511 ACCATGTTCAATCCATCCAACTG 59.234 43.478 0.00 0.00 0.00 3.16
6520 6563 4.051661 ACCATGTTCAATCCATCCAACT 57.948 40.909 0.00 0.00 0.00 3.16
6521 6564 4.021192 ACAACCATGTTCAATCCATCCAAC 60.021 41.667 0.00 0.00 35.91 3.77
6522 6565 4.158786 ACAACCATGTTCAATCCATCCAA 58.841 39.130 0.00 0.00 35.91 3.53
6523 6566 3.763360 GACAACCATGTTCAATCCATCCA 59.237 43.478 0.00 0.00 40.74 3.41
6524 6567 3.763360 TGACAACCATGTTCAATCCATCC 59.237 43.478 0.00 0.00 40.74 3.51
6525 6568 5.389859 TTGACAACCATGTTCAATCCATC 57.610 39.130 0.00 0.00 40.74 3.51
6526 6569 4.322198 GCTTGACAACCATGTTCAATCCAT 60.322 41.667 0.00 0.00 40.74 3.41
6527 6570 3.005684 GCTTGACAACCATGTTCAATCCA 59.994 43.478 0.00 0.00 40.74 3.41
6528 6571 3.005684 TGCTTGACAACCATGTTCAATCC 59.994 43.478 0.00 0.00 40.74 3.01
6529 6572 4.241590 TGCTTGACAACCATGTTCAATC 57.758 40.909 0.00 0.00 40.74 2.67
6530 6573 4.877378 ATGCTTGACAACCATGTTCAAT 57.123 36.364 0.00 0.00 40.74 2.57
6531 6574 4.669206 AATGCTTGACAACCATGTTCAA 57.331 36.364 0.00 0.00 40.74 2.69
6532 6575 5.534278 TCTTAATGCTTGACAACCATGTTCA 59.466 36.000 0.00 0.00 40.74 3.18
6533 6576 6.012658 TCTTAATGCTTGACAACCATGTTC 57.987 37.500 0.00 0.00 40.74 3.18
6534 6577 6.594788 ATCTTAATGCTTGACAACCATGTT 57.405 33.333 0.00 0.00 40.74 2.71
6535 6578 6.183360 GCTATCTTAATGCTTGACAACCATGT 60.183 38.462 0.00 0.00 44.25 3.21
6536 6579 6.204359 GCTATCTTAATGCTTGACAACCATG 58.796 40.000 0.00 0.00 0.00 3.66
6537 6580 5.300286 GGCTATCTTAATGCTTGACAACCAT 59.700 40.000 0.00 0.00 0.00 3.55
6538 6581 4.640201 GGCTATCTTAATGCTTGACAACCA 59.360 41.667 0.00 0.00 0.00 3.67
6539 6582 4.884164 AGGCTATCTTAATGCTTGACAACC 59.116 41.667 0.00 0.00 0.00 3.77
6540 6583 5.586243 TGAGGCTATCTTAATGCTTGACAAC 59.414 40.000 0.00 0.00 0.00 3.32
6541 6584 5.744171 TGAGGCTATCTTAATGCTTGACAA 58.256 37.500 0.00 0.00 0.00 3.18
6542 6585 5.357742 TGAGGCTATCTTAATGCTTGACA 57.642 39.130 0.00 0.00 0.00 3.58
6543 6586 6.094048 TGTTTGAGGCTATCTTAATGCTTGAC 59.906 38.462 0.00 0.00 0.00 3.18
6544 6587 6.179756 TGTTTGAGGCTATCTTAATGCTTGA 58.820 36.000 0.00 0.00 0.00 3.02
6545 6588 6.094603 ACTGTTTGAGGCTATCTTAATGCTTG 59.905 38.462 0.00 0.00 0.00 4.01
6546 6589 6.183347 ACTGTTTGAGGCTATCTTAATGCTT 58.817 36.000 0.00 0.00 0.00 3.91
6547 6590 5.749462 ACTGTTTGAGGCTATCTTAATGCT 58.251 37.500 0.00 0.00 0.00 3.79
6548 6591 7.736447 ATACTGTTTGAGGCTATCTTAATGC 57.264 36.000 0.00 0.00 0.00 3.56
6549 6592 9.553064 AGAATACTGTTTGAGGCTATCTTAATG 57.447 33.333 0.00 0.00 0.00 1.90
6551 6594 9.383519 CAAGAATACTGTTTGAGGCTATCTTAA 57.616 33.333 0.00 0.00 0.00 1.85
6552 6595 8.540388 ACAAGAATACTGTTTGAGGCTATCTTA 58.460 33.333 0.00 0.00 0.00 2.10
6553 6596 7.398024 ACAAGAATACTGTTTGAGGCTATCTT 58.602 34.615 0.00 0.00 0.00 2.40
6554 6597 6.951971 ACAAGAATACTGTTTGAGGCTATCT 58.048 36.000 0.00 0.00 0.00 1.98
6555 6598 8.198109 TCTACAAGAATACTGTTTGAGGCTATC 58.802 37.037 0.00 0.00 0.00 2.08
6556 6599 7.982354 GTCTACAAGAATACTGTTTGAGGCTAT 59.018 37.037 0.00 0.00 0.00 2.97
6557 6600 7.178628 AGTCTACAAGAATACTGTTTGAGGCTA 59.821 37.037 0.00 0.00 0.00 3.93
6558 6601 6.014156 AGTCTACAAGAATACTGTTTGAGGCT 60.014 38.462 0.00 0.00 0.00 4.58
6559 6602 6.166982 AGTCTACAAGAATACTGTTTGAGGC 58.833 40.000 0.00 0.00 0.00 4.70
6560 6603 8.608844 AAAGTCTACAAGAATACTGTTTGAGG 57.391 34.615 0.00 0.00 0.00 3.86
6562 6605 9.832445 AGAAAAGTCTACAAGAATACTGTTTGA 57.168 29.630 0.00 0.00 29.93 2.69
6565 6608 9.057089 CCAAGAAAAGTCTACAAGAATACTGTT 57.943 33.333 0.00 0.00 32.16 3.16
6566 6609 8.429641 TCCAAGAAAAGTCTACAAGAATACTGT 58.570 33.333 0.00 0.00 32.16 3.55
6567 6610 8.833231 TCCAAGAAAAGTCTACAAGAATACTG 57.167 34.615 0.00 0.00 32.16 2.74
6568 6611 9.442047 CATCCAAGAAAAGTCTACAAGAATACT 57.558 33.333 0.00 0.00 32.16 2.12
6569 6612 8.178313 GCATCCAAGAAAAGTCTACAAGAATAC 58.822 37.037 0.00 0.00 32.16 1.89
6570 6613 7.336931 GGCATCCAAGAAAAGTCTACAAGAATA 59.663 37.037 0.00 0.00 32.16 1.75
6571 6614 6.151817 GGCATCCAAGAAAAGTCTACAAGAAT 59.848 38.462 0.00 0.00 32.16 2.40
6572 6615 5.473504 GGCATCCAAGAAAAGTCTACAAGAA 59.526 40.000 0.00 0.00 32.16 2.52
6573 6616 5.003804 GGCATCCAAGAAAAGTCTACAAGA 58.996 41.667 0.00 0.00 32.16 3.02
6574 6617 5.006386 AGGCATCCAAGAAAAGTCTACAAG 58.994 41.667 0.00 0.00 32.16 3.16
6575 6618 4.985538 AGGCATCCAAGAAAAGTCTACAA 58.014 39.130 0.00 0.00 32.16 2.41
6576 6619 4.565652 GGAGGCATCCAAGAAAAGTCTACA 60.566 45.833 13.69 0.00 45.87 2.74
6577 6620 3.942115 GGAGGCATCCAAGAAAAGTCTAC 59.058 47.826 13.69 0.00 45.87 2.59
6578 6621 4.222124 GGAGGCATCCAAGAAAAGTCTA 57.778 45.455 13.69 0.00 45.87 2.59
6579 6622 3.078891 GGAGGCATCCAAGAAAAGTCT 57.921 47.619 13.69 0.00 45.87 3.24
6590 6633 1.150081 CCATGTGAGGGAGGCATCC 59.850 63.158 9.46 9.46 45.85 3.51
6591 6634 0.548031 TTCCATGTGAGGGAGGCATC 59.452 55.000 0.00 0.00 35.46 3.91
6592 6635 0.549950 CTTCCATGTGAGGGAGGCAT 59.450 55.000 0.00 0.00 35.46 4.40
6593 6636 0.547471 TCTTCCATGTGAGGGAGGCA 60.547 55.000 0.00 0.00 34.79 4.75
6594 6637 0.620556 TTCTTCCATGTGAGGGAGGC 59.379 55.000 0.00 0.00 34.79 4.70
6595 6638 2.093235 GTCTTCTTCCATGTGAGGGAGG 60.093 54.545 0.00 0.00 34.79 4.30
6596 6639 2.093235 GGTCTTCTTCCATGTGAGGGAG 60.093 54.545 0.00 0.00 35.46 4.30
6597 6640 1.909302 GGTCTTCTTCCATGTGAGGGA 59.091 52.381 0.00 0.00 0.00 4.20
6598 6641 1.065126 GGGTCTTCTTCCATGTGAGGG 60.065 57.143 0.00 0.00 0.00 4.30
6599 6642 1.912043 AGGGTCTTCTTCCATGTGAGG 59.088 52.381 0.00 0.00 0.00 3.86
6600 6643 3.008375 TGAAGGGTCTTCTTCCATGTGAG 59.992 47.826 8.80 0.00 41.67 3.51
6601 6644 2.978978 TGAAGGGTCTTCTTCCATGTGA 59.021 45.455 8.80 0.00 41.67 3.58
6602 6645 3.077359 GTGAAGGGTCTTCTTCCATGTG 58.923 50.000 8.80 0.00 41.67 3.21
6603 6646 2.982488 AGTGAAGGGTCTTCTTCCATGT 59.018 45.455 8.80 0.00 41.67 3.21
6604 6647 3.244700 ACAGTGAAGGGTCTTCTTCCATG 60.245 47.826 0.00 0.00 41.67 3.66
6605 6648 2.982488 ACAGTGAAGGGTCTTCTTCCAT 59.018 45.455 0.00 0.00 41.67 3.41
6606 6649 2.408565 ACAGTGAAGGGTCTTCTTCCA 58.591 47.619 0.00 0.00 41.67 3.53
6607 6650 3.142174 CAACAGTGAAGGGTCTTCTTCC 58.858 50.000 0.00 0.00 41.67 3.46
6608 6651 3.809905 ACAACAGTGAAGGGTCTTCTTC 58.190 45.455 0.00 0.00 42.43 2.87
6609 6652 3.933861 ACAACAGTGAAGGGTCTTCTT 57.066 42.857 0.00 0.00 0.00 2.52
6610 6653 3.199946 TGAACAACAGTGAAGGGTCTTCT 59.800 43.478 0.00 0.00 0.00 2.85
6611 6654 3.541632 TGAACAACAGTGAAGGGTCTTC 58.458 45.455 0.00 1.06 0.00 2.87
6612 6655 3.644966 TGAACAACAGTGAAGGGTCTT 57.355 42.857 0.00 0.00 0.00 3.01
6613 6656 3.480470 CATGAACAACAGTGAAGGGTCT 58.520 45.455 0.00 0.00 0.00 3.85
6614 6657 2.030805 GCATGAACAACAGTGAAGGGTC 60.031 50.000 0.00 0.00 0.00 4.46
6615 6658 1.956477 GCATGAACAACAGTGAAGGGT 59.044 47.619 0.00 0.00 0.00 4.34
6616 6659 1.955778 TGCATGAACAACAGTGAAGGG 59.044 47.619 0.00 0.00 0.00 3.95
6617 6660 2.880268 TCTGCATGAACAACAGTGAAGG 59.120 45.455 0.00 0.00 33.12 3.46
6618 6661 3.058432 CCTCTGCATGAACAACAGTGAAG 60.058 47.826 0.00 0.00 33.12 3.02
6619 6662 2.880268 CCTCTGCATGAACAACAGTGAA 59.120 45.455 0.00 0.00 33.12 3.18
6620 6663 2.497138 CCTCTGCATGAACAACAGTGA 58.503 47.619 0.00 0.00 33.12 3.41
6621 6664 1.068748 GCCTCTGCATGAACAACAGTG 60.069 52.381 0.00 0.00 37.47 3.66
6622 6665 1.202855 AGCCTCTGCATGAACAACAGT 60.203 47.619 0.00 0.00 41.13 3.55
6623 6666 1.531423 AGCCTCTGCATGAACAACAG 58.469 50.000 0.00 0.00 41.13 3.16
6624 6667 1.985473 AAGCCTCTGCATGAACAACA 58.015 45.000 0.00 0.00 41.13 3.33
6625 6668 2.421424 CCTAAGCCTCTGCATGAACAAC 59.579 50.000 0.00 0.00 41.13 3.32
6626 6669 2.040278 ACCTAAGCCTCTGCATGAACAA 59.960 45.455 0.00 0.00 41.13 2.83
6627 6670 1.630369 ACCTAAGCCTCTGCATGAACA 59.370 47.619 0.00 0.00 41.13 3.18
6628 6671 2.409948 ACCTAAGCCTCTGCATGAAC 57.590 50.000 0.00 0.00 41.13 3.18
6662 6821 6.017605 CCAGAATACCATCTCAATTAGTGCAC 60.018 42.308 9.40 9.40 0.00 4.57
6712 6871 1.471119 CTGGATGCCAGCAAATGTCT 58.529 50.000 0.00 0.00 45.13 3.41
6735 6894 2.799017 TCATTGCTGAACTGCCTGAAT 58.201 42.857 0.00 0.00 0.00 2.57
6789 6948 6.406370 TGGTCACTACATTATGAAACAGAGG 58.594 40.000 0.00 0.00 0.00 3.69
6790 6949 7.411912 CGTTGGTCACTACATTATGAAACAGAG 60.412 40.741 0.00 0.00 0.00 3.35
6792 6951 6.367695 TCGTTGGTCACTACATTATGAAACAG 59.632 38.462 0.00 0.00 0.00 3.16
6793 6952 6.224584 TCGTTGGTCACTACATTATGAAACA 58.775 36.000 0.00 0.00 0.00 2.83
6794 6953 6.588756 TCTCGTTGGTCACTACATTATGAAAC 59.411 38.462 0.00 0.00 0.00 2.78
6795 6954 6.588756 GTCTCGTTGGTCACTACATTATGAAA 59.411 38.462 0.00 0.00 0.00 2.69
6796 6955 6.097356 GTCTCGTTGGTCACTACATTATGAA 58.903 40.000 0.00 0.00 0.00 2.57
6798 6957 4.804139 GGTCTCGTTGGTCACTACATTATG 59.196 45.833 0.00 0.00 0.00 1.90
6799 6958 4.439700 CGGTCTCGTTGGTCACTACATTAT 60.440 45.833 0.00 0.00 0.00 1.28
6800 6959 3.119743 CGGTCTCGTTGGTCACTACATTA 60.120 47.826 0.00 0.00 0.00 1.90
6801 6960 2.352421 CGGTCTCGTTGGTCACTACATT 60.352 50.000 0.00 0.00 0.00 2.71
6803 6962 0.594602 CGGTCTCGTTGGTCACTACA 59.405 55.000 0.00 0.00 0.00 2.74
6804 6963 0.877071 TCGGTCTCGTTGGTCACTAC 59.123 55.000 0.00 0.00 37.69 2.73
6806 6965 0.966920 AATCGGTCTCGTTGGTCACT 59.033 50.000 0.00 0.00 37.69 3.41
6807 6966 1.068474 CAATCGGTCTCGTTGGTCAC 58.932 55.000 0.00 0.00 37.69 3.67
6808 6967 0.669318 GCAATCGGTCTCGTTGGTCA 60.669 55.000 0.00 0.00 37.69 4.02
6809 6968 1.683790 CGCAATCGGTCTCGTTGGTC 61.684 60.000 0.00 0.00 37.69 4.02
6810 6969 1.736645 CGCAATCGGTCTCGTTGGT 60.737 57.895 0.00 0.00 37.69 3.67
6822 6981 2.485188 TTTTTGCTCCCGCCGCAATC 62.485 55.000 5.33 0.00 45.67 2.67
6823 6982 1.887344 ATTTTTGCTCCCGCCGCAAT 61.887 50.000 5.33 0.00 45.67 3.56
6824 6983 2.093537 AATTTTTGCTCCCGCCGCAA 62.094 50.000 0.00 0.00 44.83 4.85
6825 6984 1.244697 TAATTTTTGCTCCCGCCGCA 61.245 50.000 0.00 0.00 35.22 5.69
6826 6985 0.102300 ATAATTTTTGCTCCCGCCGC 59.898 50.000 0.00 0.00 34.43 6.53
6827 6986 3.252215 TGATATAATTTTTGCTCCCGCCG 59.748 43.478 0.00 0.00 34.43 6.46
6828 6987 4.037446 TGTGATATAATTTTTGCTCCCGCC 59.963 41.667 0.00 0.00 34.43 6.13
6829 6988 5.008613 TCTGTGATATAATTTTTGCTCCCGC 59.991 40.000 0.00 0.00 0.00 6.13
6830 6989 6.618287 TCTGTGATATAATTTTTGCTCCCG 57.382 37.500 0.00 0.00 0.00 5.14
6831 6990 9.468532 GAATTCTGTGATATAATTTTTGCTCCC 57.531 33.333 0.00 0.00 0.00 4.30
6950 7110 7.614124 ACATTTCATTATGCATTTCAAACCC 57.386 32.000 3.54 0.00 0.00 4.11
6994 7154 5.365314 AGCAGGTTAAGGGTTTTCAAATCAA 59.635 36.000 0.00 0.00 0.00 2.57
7035 7195 6.635030 AATTAGCCTTCGGATTTTATGGTC 57.365 37.500 0.00 0.00 0.00 4.02
7074 7234 4.174704 ACCGAATAAATTAACCTCCCCC 57.825 45.455 0.00 0.00 0.00 5.40
7075 7235 5.163163 ACCTACCGAATAAATTAACCTCCCC 60.163 44.000 0.00 0.00 0.00 4.81
7076 7236 5.933617 ACCTACCGAATAAATTAACCTCCC 58.066 41.667 0.00 0.00 0.00 4.30
7077 7237 8.206867 AGTAACCTACCGAATAAATTAACCTCC 58.793 37.037 0.00 0.00 0.00 4.30
7164 7327 2.367567 TCAGGTGGAGGTCACTAAACAC 59.632 50.000 0.00 0.00 45.38 3.32
7183 7346 7.744087 AATGCATGTTCTAAGTTAGTTGTCA 57.256 32.000 9.71 5.87 0.00 3.58
7212 7375 9.979897 TTGCCCTTAGATCTATGCATAAATAAT 57.020 29.630 17.65 0.00 0.00 1.28
7223 7386 4.202264 CGTTGAGGTTGCCCTTAGATCTAT 60.202 45.833 2.58 0.00 42.86 1.98
7241 7404 2.399856 GTTTGGGTCAGCACGTTGA 58.600 52.632 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.