Multiple sequence alignment - TraesCS1B01G168100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G168100 chr1B 100.000 5543 0 0 1 5543 297455322 297460864 0.000000e+00 10237.0
1 TraesCS1B01G168100 chr1B 100.000 360 0 0 5762 6121 297461083 297461442 0.000000e+00 665.0
2 TraesCS1B01G168100 chr1B 80.192 313 53 9 3645 3952 297299500 297299808 6.170000e-55 226.0
3 TraesCS1B01G168100 chr1B 91.228 114 7 3 1890 2003 570483062 570483172 1.060000e-32 152.0
4 TraesCS1B01G168100 chr1B 100.000 30 0 0 5764 5793 423083342 423083313 8.570000e-04 56.5
5 TraesCS1B01G168100 chr1D 93.718 2308 101 32 3018 5299 203471280 203473569 0.000000e+00 3419.0
6 TraesCS1B01G168100 chr1D 88.107 1875 98 44 1 1804 203468747 203470567 0.000000e+00 2111.0
7 TraesCS1B01G168100 chr1D 93.548 217 8 3 2552 2764 203471071 203471285 9.900000e-83 318.0
8 TraesCS1B01G168100 chr1D 95.000 160 8 0 2407 2566 203470888 203471047 1.020000e-62 252.0
9 TraesCS1B01G168100 chr1D 92.814 167 11 1 2000 2165 203470627 203470793 2.200000e-59 241.0
10 TraesCS1B01G168100 chr1D 80.625 320 52 10 3638 3952 203431041 203431355 7.930000e-59 239.0
11 TraesCS1B01G168100 chr1D 96.667 60 2 0 1830 1889 203470570 203470629 3.900000e-17 100.0
12 TraesCS1B01G168100 chr1D 100.000 31 0 0 5764 5794 5980669 5980639 2.380000e-04 58.4
13 TraesCS1B01G168100 chr1D 100.000 29 0 0 5766 5794 199142138 199142110 3.000000e-03 54.7
14 TraesCS1B01G168100 chr1D 96.875 32 0 1 5764 5794 199158764 199158733 1.100000e-02 52.8
15 TraesCS1B01G168100 chr1A 92.466 2190 88 31 3020 5179 258160247 258162389 0.000000e+00 3059.0
16 TraesCS1B01G168100 chr1A 88.519 1141 54 35 775 1889 258156920 258158009 0.000000e+00 1310.0
17 TraesCS1B01G168100 chr1A 90.270 370 21 4 2000 2354 258158007 258158376 2.580000e-128 470.0
18 TraesCS1B01G168100 chr1A 89.147 387 15 11 2376 2757 258158370 258158734 2.010000e-124 457.0
19 TraesCS1B01G168100 chr1A 88.736 364 37 4 1 364 258147095 258147454 5.630000e-120 442.0
20 TraesCS1B01G168100 chr1A 86.150 361 45 3 5762 6121 258163251 258163607 9.620000e-103 385.0
21 TraesCS1B01G168100 chr1A 90.647 278 16 5 522 790 258156628 258156904 1.620000e-95 361.0
22 TraesCS1B01G168100 chr1A 88.192 271 28 3 2759 3027 552265383 552265115 2.750000e-83 320.0
23 TraesCS1B01G168100 chr1A 91.716 169 14 0 359 527 258156436 258156604 1.030000e-57 235.0
24 TraesCS1B01G168100 chr1A 80.192 313 53 9 3645 3952 257967750 257968058 6.170000e-55 226.0
25 TraesCS1B01G168100 chr1A 94.118 68 4 0 5476 5543 258163139 258163206 3.020000e-18 104.0
26 TraesCS1B01G168100 chr1A 100.000 28 0 0 5766 5793 149863051 149863078 1.100000e-02 52.8
27 TraesCS1B01G168100 chr3B 89.706 816 75 8 4212 5021 256247164 256246352 0.000000e+00 1033.0
28 TraesCS1B01G168100 chr3B 87.669 592 68 3 3533 4120 256247747 256247157 0.000000e+00 684.0
29 TraesCS1B01G168100 chr3B 89.474 266 26 2 2761 3025 331237432 331237168 9.830000e-88 335.0
30 TraesCS1B01G168100 chr3B 91.228 228 20 0 3223 3450 256248063 256247836 1.660000e-80 311.0
31 TraesCS1B01G168100 chr3B 82.094 363 40 12 5762 6116 370926980 370927325 2.790000e-73 287.0
32 TraesCS1B01G168100 chr3A 89.706 816 75 7 4212 5021 217959734 217958922 0.000000e+00 1033.0
33 TraesCS1B01G168100 chr3A 90.758 422 39 0 3539 3960 217963341 217962920 1.150000e-156 564.0
34 TraesCS1B01G168100 chr3A 89.354 263 25 3 2761 3021 739916701 739916962 1.650000e-85 327.0
35 TraesCS1B01G168100 chr3A 90.000 230 23 0 3223 3452 217963635 217963406 1.290000e-76 298.0
36 TraesCS1B01G168100 chr3D 88.682 592 63 2 3533 4120 177348289 177347698 0.000000e+00 719.0
37 TraesCS1B01G168100 chr3D 89.036 529 55 3 4212 4740 177347705 177347180 0.000000e+00 652.0
38 TraesCS1B01G168100 chr3D 90.411 292 19 7 4736 5021 177342125 177341837 5.790000e-100 375.0
39 TraesCS1B01G168100 chr3D 89.565 230 24 0 3223 3452 177348599 177348370 6.000000e-75 292.0
40 TraesCS1B01G168100 chr3D 81.543 363 42 11 5762 6116 279205747 279205402 6.040000e-70 276.0
41 TraesCS1B01G168100 chr3D 75.287 174 32 9 4682 4849 23229537 23229369 8.510000e-09 73.1
42 TraesCS1B01G168100 chr5D 89.493 276 26 3 2761 3034 558926349 558926623 4.540000e-91 346.0
43 TraesCS1B01G168100 chr5D 78.797 349 39 23 5767 6098 219649884 219649554 1.040000e-47 202.0
44 TraesCS1B01G168100 chr5D 100.000 28 0 0 5766 5793 246681158 246681185 1.100000e-02 52.8
45 TraesCS1B01G168100 chr5A 90.152 264 24 2 2760 3022 554186865 554186603 5.880000e-90 342.0
46 TraesCS1B01G168100 chr5A 74.694 735 148 29 4277 4995 672836829 672836117 6.000000e-75 292.0
47 TraesCS1B01G168100 chr5A 82.562 281 41 7 3677 3953 672837340 672837064 2.200000e-59 241.0
48 TraesCS1B01G168100 chr5A 78.736 348 40 23 5767 6098 293402901 293402572 1.040000e-47 202.0
49 TraesCS1B01G168100 chr5A 80.889 225 41 2 3226 3449 672841298 672841075 6.310000e-40 176.0
50 TraesCS1B01G168100 chr5A 100.000 30 0 0 5764 5793 84729602 84729631 8.570000e-04 56.5
51 TraesCS1B01G168100 chr5A 100.000 29 0 0 5764 5792 211273708 211273736 3.000000e-03 54.7
52 TraesCS1B01G168100 chr5A 100.000 29 0 0 5764 5792 217402683 217402711 3.000000e-03 54.7
53 TraesCS1B01G168100 chr6B 89.513 267 26 2 2759 3024 563531940 563531675 2.730000e-88 337.0
54 TraesCS1B01G168100 chr6B 92.857 112 7 1 1890 2001 506292351 506292241 1.770000e-35 161.0
55 TraesCS1B01G168100 chr6B 94.175 103 6 0 1887 1989 438629384 438629486 2.280000e-34 158.0
56 TraesCS1B01G168100 chr5B 89.734 263 26 1 2764 3025 675950445 675950183 9.830000e-88 335.0
57 TraesCS1B01G168100 chr5B 77.681 345 45 21 5768 6098 242200294 242199968 1.360000e-41 182.0
58 TraesCS1B01G168100 chr5B 76.812 345 46 23 5768 6098 237762291 237762615 4.910000e-36 163.0
59 TraesCS1B01G168100 chr5B 92.453 106 7 1 1875 1980 391643602 391643706 3.820000e-32 150.0
60 TraesCS1B01G168100 chr7A 89.313 262 28 0 2761 3022 549395218 549395479 4.570000e-86 329.0
61 TraesCS1B01G168100 chr7A 86.992 123 11 4 5785 5902 386352319 386352197 3.850000e-27 134.0
62 TraesCS1B01G168100 chr7B 89.535 258 25 2 2760 3016 642062329 642062585 5.920000e-85 326.0
63 TraesCS1B01G168100 chr7B 88.194 144 13 4 5762 5902 292837534 292837676 1.060000e-37 169.0
64 TraesCS1B01G168100 chr7B 94.949 99 5 0 1882 1980 717178038 717178136 8.210000e-34 156.0
65 TraesCS1B01G168100 chr7B 94.949 99 5 0 1882 1980 717252691 717252789 8.210000e-34 156.0
66 TraesCS1B01G168100 chr7B 83.740 123 15 5 5785 5902 292834261 292834383 1.800000e-20 111.0
67 TraesCS1B01G168100 chr7B 88.889 63 6 1 5324 5386 234907793 234907732 6.580000e-10 76.8
68 TraesCS1B01G168100 chr4B 74.387 734 155 24 4277 4995 631571589 631570874 3.610000e-72 283.0
69 TraesCS1B01G168100 chr4D 74.216 733 158 23 4277 4995 493329211 493328496 1.680000e-70 278.0
70 TraesCS1B01G168100 chr4D 77.488 422 82 12 3645 4059 493329755 493329340 2.200000e-59 241.0
71 TraesCS1B01G168100 chr4D 80.804 224 41 2 3226 3448 493336872 493336650 2.270000e-39 174.0
72 TraesCS1B01G168100 chr4D 96.875 32 0 1 5762 5793 205907837 205907867 1.100000e-02 52.8
73 TraesCS1B01G168100 chr6D 72.493 698 168 19 4277 4962 22173500 22172815 2.890000e-48 204.0
74 TraesCS1B01G168100 chr6D 77.199 307 66 4 3648 3952 22174034 22173730 6.310000e-40 176.0
75 TraesCS1B01G168100 chr6D 86.364 66 6 3 5324 5386 315956199 315956134 1.100000e-07 69.4
76 TraesCS1B01G168100 chr6D 90.476 42 3 1 5762 5803 343965425 343965385 3.000000e-03 54.7
77 TraesCS1B01G168100 chr6A 72.365 702 162 26 4277 4962 21635835 21635150 6.260000e-45 193.0
78 TraesCS1B01G168100 chr6A 78.317 309 59 6 3648 3952 21636369 21636065 6.260000e-45 193.0
79 TraesCS1B01G168100 chr6A 79.104 134 17 9 5989 6116 68639660 68639788 1.410000e-11 82.4
80 TraesCS1B01G168100 chr2B 94.059 101 6 0 1880 1980 584129392 584129492 2.950000e-33 154.0
81 TraesCS1B01G168100 chr2B 90.517 116 9 2 1890 2003 134546005 134545890 1.060000e-32 152.0
82 TraesCS1B01G168100 chr2B 93.269 104 6 1 1890 1992 318259056 318258953 1.060000e-32 152.0
83 TraesCS1B01G168100 chr2B 90.323 62 4 2 5320 5380 794230999 794230939 5.090000e-11 80.5
84 TraesCS1B01G168100 chr7D 88.430 121 11 3 5785 5902 356905203 356905323 6.400000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G168100 chr1B 297455322 297461442 6120 False 5451.000000 10237 100.000000 1 6121 2 chr1B.!!$F3 6120
1 TraesCS1B01G168100 chr1D 203468747 203473569 4822 False 1073.500000 3419 93.309000 1 5299 6 chr1D.!!$F2 5298
2 TraesCS1B01G168100 chr1A 258156436 258163607 7171 False 797.625000 3059 90.379125 359 6121 8 chr1A.!!$F4 5762
3 TraesCS1B01G168100 chr3B 256246352 256248063 1711 True 676.000000 1033 89.534333 3223 5021 3 chr3B.!!$R2 1798
4 TraesCS1B01G168100 chr3A 217958922 217963635 4713 True 631.666667 1033 90.154667 3223 5021 3 chr3A.!!$R1 1798
5 TraesCS1B01G168100 chr3D 177347180 177348599 1419 True 554.333333 719 89.094333 3223 4740 3 chr3D.!!$R4 1517
6 TraesCS1B01G168100 chr5A 672836117 672841298 5181 True 236.333333 292 79.381667 3226 4995 3 chr5A.!!$R3 1769
7 TraesCS1B01G168100 chr4B 631570874 631571589 715 True 283.000000 283 74.387000 4277 4995 1 chr4B.!!$R1 718
8 TraesCS1B01G168100 chr4D 493328496 493329755 1259 True 259.500000 278 75.852000 3645 4995 2 chr4D.!!$R2 1350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.179018 GAGGTAATGGGCCGCTTCAT 60.179 55.0 0.00 0.0 0.00 2.57 F
258 280 0.323999 AAACAACGGCCCCTTATCCC 60.324 55.0 0.00 0.0 0.00 3.85 F
1697 1831 0.389391 TAAGCAGCGGCAGAGATACC 59.611 55.0 12.44 0.0 44.61 2.73 F
2766 2961 0.035739 TGCCGGTTTTCAGTACTCCC 59.964 55.0 1.90 0.0 0.00 4.30 F
3723 8801 0.038744 CCAAGCCCAACATCTCCACT 59.961 55.0 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2173 0.593128 GCACCGTGCTCTTTCATTGT 59.407 50.0 16.51 0.00 40.96 2.71 R
2073 2207 0.607620 GCAGCATCCTAGGGCTCTAG 59.392 60.0 14.19 14.19 41.95 2.43 R
3520 5126 0.389166 GCGATCATTAGCGGAGGAGG 60.389 60.0 0.00 0.00 34.37 4.30 R
4673 12811 0.319383 CGAAGATGGAGAGCGGGATG 60.319 60.0 0.00 0.00 0.00 3.51 R
5358 13511 0.671796 TGGCCGTATACATCTGTCGG 59.328 55.0 3.32 4.97 43.37 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 0.179018 GAGGTAATGGGCCGCTTCAT 60.179 55.000 0.00 0.00 0.00 2.57
85 86 3.146066 GGGCCGCTTCATTGATATAACA 58.854 45.455 0.00 0.00 0.00 2.41
87 88 4.218417 GGGCCGCTTCATTGATATAACAAT 59.782 41.667 2.56 2.56 40.50 2.71
88 89 5.278957 GGGCCGCTTCATTGATATAACAATT 60.279 40.000 5.54 0.00 38.25 2.32
111 112 8.718102 ATTATAGTTCACTACACACAATGGAC 57.282 34.615 0.00 0.00 0.00 4.02
112 113 3.740115 AGTTCACTACACACAATGGACC 58.260 45.455 0.00 0.00 0.00 4.46
132 154 1.666888 CGAATCCAAACAGCACAAGCC 60.667 52.381 0.00 0.00 43.56 4.35
141 163 3.279116 GCACAAGCCTCACGCACA 61.279 61.111 0.00 0.00 41.38 4.57
144 166 1.153168 ACAAGCCTCACGCACAACT 60.153 52.632 0.00 0.00 41.38 3.16
149 171 1.560860 GCCTCACGCACAACTGACTC 61.561 60.000 0.00 0.00 37.47 3.36
151 173 1.135046 CTCACGCACAACTGACTCAG 58.865 55.000 4.36 4.36 37.52 3.35
185 207 4.471386 AGCAGTCCCATTACATAGACAACT 59.529 41.667 0.00 0.00 0.00 3.16
249 271 1.234821 TGATGTCAGAAACAACGGCC 58.765 50.000 0.00 0.00 42.37 6.13
254 276 0.766131 TCAGAAACAACGGCCCCTTA 59.234 50.000 0.00 0.00 0.00 2.69
255 277 1.353022 TCAGAAACAACGGCCCCTTAT 59.647 47.619 0.00 0.00 0.00 1.73
258 280 0.323999 AAACAACGGCCCCTTATCCC 60.324 55.000 0.00 0.00 0.00 3.85
259 281 1.212250 AACAACGGCCCCTTATCCCT 61.212 55.000 0.00 0.00 0.00 4.20
266 288 1.484444 GCCCCTTATCCCTGAGCGAT 61.484 60.000 0.00 0.00 0.00 4.58
267 289 1.938585 CCCCTTATCCCTGAGCGATA 58.061 55.000 0.00 0.00 0.00 2.92
270 292 2.834549 CCCTTATCCCTGAGCGATACAT 59.165 50.000 0.00 0.00 0.00 2.29
275 297 6.041409 CCTTATCCCTGAGCGATACATCATAT 59.959 42.308 0.00 0.00 0.00 1.78
276 298 7.231519 CCTTATCCCTGAGCGATACATCATATA 59.768 40.741 0.00 0.00 0.00 0.86
342 364 4.229304 TCACCTGTGAAAACCTTCTTCA 57.771 40.909 0.00 0.00 36.53 3.02
344 366 4.927357 TCACCTGTGAAAACCTTCTTCAGG 60.927 45.833 18.62 18.62 46.92 3.86
353 375 0.533951 CCTTCTTCAGGGGCAAATGC 59.466 55.000 0.00 0.00 39.39 3.56
354 376 1.553706 CTTCTTCAGGGGCAAATGCT 58.446 50.000 5.25 0.00 41.70 3.79
382 404 2.591753 GCATAGCAGTGGCCTCCA 59.408 61.111 3.32 0.00 42.56 3.86
399 421 0.954452 CCACCAACTCAAGTTCAGGC 59.046 55.000 0.00 0.00 35.83 4.85
462 484 2.450160 TGATGATCACGAATCACGACG 58.550 47.619 0.00 0.00 47.00 5.12
490 512 2.037511 TCCGTTTACCCAGTGTCGAAAT 59.962 45.455 0.00 0.00 0.00 2.17
498 520 1.135972 CCAGTGTCGAAATGGAAAGCG 60.136 52.381 6.03 0.00 36.09 4.68
551 602 2.951229 AACTTCAACGAGGTGGGAAT 57.049 45.000 0.00 0.00 0.00 3.01
579 630 6.615088 ACTAGTATTTTGCAGCAAGTGAATG 58.385 36.000 8.12 0.82 0.00 2.67
646 697 4.162509 ACTCTGATTAACTTAGCCACCTCC 59.837 45.833 0.00 0.00 0.00 4.30
649 700 2.354261 TTAACTTAGCCACCTCCCCT 57.646 50.000 0.00 0.00 0.00 4.79
899 990 1.000274 CGGGCTTATAAATGGGCAAGC 60.000 52.381 0.00 0.00 42.08 4.01
954 1053 2.976490 GCCCTCTGCACACCCATCT 61.976 63.158 0.00 0.00 40.77 2.90
956 1055 1.556373 CCCTCTGCACACCCATCTCA 61.556 60.000 0.00 0.00 0.00 3.27
958 1057 0.392193 CTCTGCACACCCATCTCACC 60.392 60.000 0.00 0.00 0.00 4.02
963 1067 0.911525 CACACCCATCTCACCTCCCT 60.912 60.000 0.00 0.00 0.00 4.20
965 1069 1.003573 ACCCATCTCACCTCCCTCC 59.996 63.158 0.00 0.00 0.00 4.30
973 1077 0.858598 TCACCTCCCTCCCTCCCTAA 60.859 60.000 0.00 0.00 0.00 2.69
983 1087 3.155501 CTCCCTCCCTAACTACCATACG 58.844 54.545 0.00 0.00 0.00 3.06
984 1088 2.515429 TCCCTCCCTAACTACCATACGT 59.485 50.000 0.00 0.00 0.00 3.57
986 1090 4.354987 TCCCTCCCTAACTACCATACGTAT 59.645 45.833 1.14 1.14 0.00 3.06
1154 1258 8.131731 CGTAGGTAATTACTCTACTTTACCACC 58.868 40.741 25.42 8.59 43.88 4.61
1201 1306 2.039624 ATCTGCTCCACCTCCGGT 59.960 61.111 0.00 0.00 35.62 5.28
1299 1409 6.201517 TGCGTCTTTCTTTTCTTTCTTGATG 58.798 36.000 0.00 0.00 0.00 3.07
1300 1410 6.038161 TGCGTCTTTCTTTTCTTTCTTGATGA 59.962 34.615 0.00 0.00 0.00 2.92
1594 1712 4.655527 CGATCCCCGTATCACAGC 57.344 61.111 0.00 0.00 0.00 4.40
1611 1734 1.748879 GCAACTGCGGGCATAGGAA 60.749 57.895 0.00 0.00 0.00 3.36
1697 1831 0.389391 TAAGCAGCGGCAGAGATACC 59.611 55.000 12.44 0.00 44.61 2.73
1698 1832 2.280457 GCAGCGGCAGAGATACCC 60.280 66.667 3.18 0.00 40.72 3.69
1699 1833 3.094062 GCAGCGGCAGAGATACCCA 62.094 63.158 3.18 0.00 40.72 4.51
1700 1834 1.522092 CAGCGGCAGAGATACCCAA 59.478 57.895 1.45 0.00 0.00 4.12
1706 1840 2.693591 CGGCAGAGATACCCAAGAACTA 59.306 50.000 0.00 0.00 0.00 2.24
1725 1859 2.143419 GGAGCCATCCATCCCTCGT 61.143 63.158 0.00 0.00 45.87 4.18
1726 1860 1.369321 GAGCCATCCATCCCTCGTC 59.631 63.158 0.00 0.00 0.00 4.20
1727 1861 2.105806 GAGCCATCCATCCCTCGTCC 62.106 65.000 0.00 0.00 0.00 4.79
1728 1862 2.737180 CCATCCATCCCTCGTCCG 59.263 66.667 0.00 0.00 0.00 4.79
1739 1873 0.949105 CCTCGTCCGGTTTTGAGTGG 60.949 60.000 0.00 0.00 0.00 4.00
1786 1920 2.914756 TATCCCACCCACGCGCTCTA 62.915 60.000 5.73 0.00 0.00 2.43
1788 1922 2.495409 CCCACCCACGCGCTCTATA 61.495 63.158 5.73 0.00 0.00 1.31
1804 1938 3.332919 TCTATAGACATACGCCCGTCTC 58.667 50.000 0.00 0.00 41.52 3.36
1823 1957 5.527951 GTCTCTCTGCAGTAATGGATGTAG 58.472 45.833 14.67 0.00 0.00 2.74
1824 1958 5.068460 GTCTCTCTGCAGTAATGGATGTAGT 59.932 44.000 14.67 0.00 31.85 2.73
1825 1959 6.263392 GTCTCTCTGCAGTAATGGATGTAGTA 59.737 42.308 14.67 0.00 31.85 1.82
1826 1960 6.263392 TCTCTCTGCAGTAATGGATGTAGTAC 59.737 42.308 14.67 0.00 31.85 2.73
1827 1961 5.008712 TCTCTGCAGTAATGGATGTAGTACG 59.991 44.000 14.67 0.00 31.85 3.67
1828 1962 4.643334 TCTGCAGTAATGGATGTAGTACGT 59.357 41.667 14.67 0.00 31.85 3.57
1882 2016 6.610075 ACCCAATCACAATAAATTTGCTCT 57.390 33.333 0.00 0.00 0.00 4.09
1885 2019 7.147846 ACCCAATCACAATAAATTTGCTCTAGG 60.148 37.037 0.00 0.00 0.00 3.02
1886 2020 7.147846 CCCAATCACAATAAATTTGCTCTAGGT 60.148 37.037 0.00 0.00 0.00 3.08
1887 2021 8.902806 CCAATCACAATAAATTTGCTCTAGGTA 58.097 33.333 0.00 0.00 0.00 3.08
1888 2022 9.941664 CAATCACAATAAATTTGCTCTAGGTAG 57.058 33.333 0.00 0.00 0.00 3.18
1889 2023 9.686683 AATCACAATAAATTTGCTCTAGGTAGT 57.313 29.630 0.00 0.00 0.00 2.73
1891 2025 9.595823 TCACAATAAATTTGCTCTAGGTAGTAC 57.404 33.333 0.00 0.00 0.00 2.73
1892 2026 9.601217 CACAATAAATTTGCTCTAGGTAGTACT 57.399 33.333 0.00 0.00 0.00 2.73
1893 2027 9.819267 ACAATAAATTTGCTCTAGGTAGTACTC 57.181 33.333 0.00 0.00 0.00 2.59
1894 2028 9.262358 CAATAAATTTGCTCTAGGTAGTACTCC 57.738 37.037 0.00 0.48 0.00 3.85
1895 2029 5.873146 AATTTGCTCTAGGTAGTACTCCC 57.127 43.478 0.00 0.00 0.00 4.30
1896 2030 4.604784 TTTGCTCTAGGTAGTACTCCCT 57.395 45.455 12.22 12.22 34.74 4.20
1897 2031 3.860968 TGCTCTAGGTAGTACTCCCTC 57.139 52.381 10.79 0.00 32.08 4.30
1898 2032 2.442502 TGCTCTAGGTAGTACTCCCTCC 59.557 54.545 10.79 4.42 32.08 4.30
1899 2033 2.550639 GCTCTAGGTAGTACTCCCTCCG 60.551 59.091 10.79 3.97 32.08 4.63
1900 2034 2.705127 CTCTAGGTAGTACTCCCTCCGT 59.295 54.545 10.79 0.00 32.08 4.69
1901 2035 2.703007 TCTAGGTAGTACTCCCTCCGTC 59.297 54.545 10.79 0.00 32.08 4.79
1902 2036 1.594129 AGGTAGTACTCCCTCCGTCT 58.406 55.000 0.11 0.00 0.00 4.18
1903 2037 1.490069 AGGTAGTACTCCCTCCGTCTC 59.510 57.143 0.11 0.00 0.00 3.36
1904 2038 1.211457 GGTAGTACTCCCTCCGTCTCA 59.789 57.143 0.00 0.00 0.00 3.27
1905 2039 2.356535 GGTAGTACTCCCTCCGTCTCAA 60.357 54.545 0.00 0.00 0.00 3.02
1906 2040 2.599408 AGTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
1907 2041 2.885616 AGTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
1908 2042 3.442076 AGTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
1909 2043 4.607239 AGTACTCCCTCCGTCTCAAAATA 58.393 43.478 0.00 0.00 0.00 1.40
1910 2044 5.021458 AGTACTCCCTCCGTCTCAAAATAA 58.979 41.667 0.00 0.00 0.00 1.40
1911 2045 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
1912 2046 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
1913 2047 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
1914 2048 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
1915 2049 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
1916 2050 4.322801 CCCTCCGTCTCAAAATAAGTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
1917 2051 5.238583 CCTCCGTCTCAAAATAAGTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
1918 2052 5.120830 CCTCCGTCTCAAAATAAGTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
1919 2053 5.849510 TCCGTCTCAAAATAAGTGTCTTGA 58.150 37.500 0.00 0.00 0.00 3.02
1920 2054 5.694910 TCCGTCTCAAAATAAGTGTCTTGAC 59.305 40.000 0.00 0.00 0.00 3.18
1921 2055 5.107065 CCGTCTCAAAATAAGTGTCTTGACC 60.107 44.000 0.00 0.00 0.00 4.02
1922 2056 5.696724 CGTCTCAAAATAAGTGTCTTGACCT 59.303 40.000 0.00 0.00 0.00 3.85
1923 2057 6.202954 CGTCTCAAAATAAGTGTCTTGACCTT 59.797 38.462 0.00 4.52 0.00 3.50
1924 2058 7.384115 CGTCTCAAAATAAGTGTCTTGACCTTA 59.616 37.037 11.29 11.29 0.00 2.69
1925 2059 8.713271 GTCTCAAAATAAGTGTCTTGACCTTAG 58.287 37.037 13.13 5.29 0.00 2.18
1926 2060 8.429641 TCTCAAAATAAGTGTCTTGACCTTAGT 58.570 33.333 13.13 9.86 0.00 2.24
1927 2061 9.706691 CTCAAAATAAGTGTCTTGACCTTAGTA 57.293 33.333 13.13 0.23 0.00 1.82
1963 2097 8.895737 ACTAGAGCTAGTATAAAGTTGAGACAC 58.104 37.037 8.35 0.00 43.98 3.67
1964 2098 7.948034 AGAGCTAGTATAAAGTTGAGACACT 57.052 36.000 0.00 0.00 0.00 3.55
1965 2099 8.356000 AGAGCTAGTATAAAGTTGAGACACTT 57.644 34.615 0.00 0.00 38.74 3.16
1966 2100 9.463902 AGAGCTAGTATAAAGTTGAGACACTTA 57.536 33.333 0.00 0.00 35.87 2.24
1974 2108 8.934023 ATAAAGTTGAGACACTTATTTTGGGA 57.066 30.769 0.00 0.00 35.87 4.37
1975 2109 6.635030 AAGTTGAGACACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
1976 2110 4.755123 AGTTGAGACACTTATTTTGGGACG 59.245 41.667 0.00 0.00 0.00 4.79
1977 2111 3.670625 TGAGACACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 0.00 4.79
1978 2112 3.325425 TGAGACACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 0.00 4.69
1979 2113 3.933332 GAGACACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 0.00 4.63
1980 2114 3.581332 AGACACTTATTTTGGGACGGAGA 59.419 43.478 0.00 0.00 0.00 3.71
1981 2115 4.041198 AGACACTTATTTTGGGACGGAGAA 59.959 41.667 0.00 0.00 0.00 2.87
1982 2116 4.721132 ACACTTATTTTGGGACGGAGAAA 58.279 39.130 0.00 0.00 0.00 2.52
1983 2117 5.134661 ACACTTATTTTGGGACGGAGAAAA 58.865 37.500 0.00 0.00 0.00 2.29
1984 2118 5.773176 ACACTTATTTTGGGACGGAGAAAAT 59.227 36.000 0.00 0.00 34.49 1.82
1985 2119 6.943718 ACACTTATTTTGGGACGGAGAAAATA 59.056 34.615 0.00 0.00 32.78 1.40
1986 2120 7.094506 ACACTTATTTTGGGACGGAGAAAATAC 60.095 37.037 0.00 0.00 33.41 1.89
1987 2121 7.120726 CACTTATTTTGGGACGGAGAAAATACT 59.879 37.037 0.00 0.00 33.41 2.12
1988 2122 8.323567 ACTTATTTTGGGACGGAGAAAATACTA 58.676 33.333 0.00 0.00 33.41 1.82
1989 2123 9.169592 CTTATTTTGGGACGGAGAAAATACTAA 57.830 33.333 0.00 0.00 33.41 2.24
1990 2124 9.689501 TTATTTTGGGACGGAGAAAATACTAAT 57.310 29.630 0.00 0.00 33.41 1.73
1992 2126 8.496707 TTTTGGGACGGAGAAAATACTAATAC 57.503 34.615 0.00 0.00 0.00 1.89
1993 2127 7.427989 TTGGGACGGAGAAAATACTAATACT 57.572 36.000 0.00 0.00 0.00 2.12
1994 2128 8.537728 TTGGGACGGAGAAAATACTAATACTA 57.462 34.615 0.00 0.00 0.00 1.82
1995 2129 7.945134 TGGGACGGAGAAAATACTAATACTAC 58.055 38.462 0.00 0.00 0.00 2.73
1996 2130 7.781693 TGGGACGGAGAAAATACTAATACTACT 59.218 37.037 0.00 0.00 0.00 2.57
1997 2131 9.289782 GGGACGGAGAAAATACTAATACTACTA 57.710 37.037 0.00 0.00 0.00 1.82
2039 2173 3.135994 GGCTGTTACAAAACGAAGGAGA 58.864 45.455 0.00 0.00 38.53 3.71
2054 2188 2.693069 AGGAGACAATGAAAGAGCACG 58.307 47.619 0.00 0.00 0.00 5.34
2173 2313 7.855409 TGAGTTGTTTAGTTCATGATTTTGTCG 59.145 33.333 0.00 0.00 0.00 4.35
2206 2346 0.602562 GCAGCAATGTGTTTAGGCCA 59.397 50.000 5.01 0.00 0.00 5.36
2210 2350 1.668628 GCAATGTGTTTAGGCCAACGG 60.669 52.381 5.01 0.00 0.00 4.44
2292 2440 9.651718 GCATGAGTATTAGCAGTATTTGTTTAC 57.348 33.333 0.00 0.00 0.00 2.01
2314 2462 4.164221 ACCTCATGTTCGTTTCCATAGGAT 59.836 41.667 0.00 0.00 0.00 3.24
2335 2484 6.053005 GGATAATTTTACTCATCACCGGTGA 58.947 40.000 37.79 37.79 44.59 4.02
2359 2508 8.421673 GAGTAGTTACACTCACTTGACTTTTT 57.578 34.615 9.07 0.00 43.70 1.94
2360 2509 8.421673 AGTAGTTACACTCACTTGACTTTTTC 57.578 34.615 0.00 0.00 0.00 2.29
2361 2510 8.258708 AGTAGTTACACTCACTTGACTTTTTCT 58.741 33.333 0.00 0.00 0.00 2.52
2362 2511 7.541122 AGTTACACTCACTTGACTTTTTCTC 57.459 36.000 0.00 0.00 0.00 2.87
2363 2512 7.103641 AGTTACACTCACTTGACTTTTTCTCA 58.896 34.615 0.00 0.00 0.00 3.27
2364 2513 7.770897 AGTTACACTCACTTGACTTTTTCTCAT 59.229 33.333 0.00 0.00 0.00 2.90
2365 2514 9.042008 GTTACACTCACTTGACTTTTTCTCATA 57.958 33.333 0.00 0.00 0.00 2.15
2366 2515 9.778741 TTACACTCACTTGACTTTTTCTCATAT 57.221 29.630 0.00 0.00 0.00 1.78
2367 2516 8.092521 ACACTCACTTGACTTTTTCTCATATG 57.907 34.615 0.00 0.00 0.00 1.78
2368 2517 7.933577 ACACTCACTTGACTTTTTCTCATATGA 59.066 33.333 5.07 5.07 0.00 2.15
2369 2518 8.777413 CACTCACTTGACTTTTTCTCATATGAA 58.223 33.333 6.90 0.00 0.00 2.57
2370 2519 8.997323 ACTCACTTGACTTTTTCTCATATGAAG 58.003 33.333 6.90 3.42 0.00 3.02
2371 2520 9.212641 CTCACTTGACTTTTTCTCATATGAAGA 57.787 33.333 6.90 4.04 0.00 2.87
2372 2521 9.212641 TCACTTGACTTTTTCTCATATGAAGAG 57.787 33.333 6.90 0.00 34.42 2.85
2373 2522 9.212641 CACTTGACTTTTTCTCATATGAAGAGA 57.787 33.333 6.90 0.00 40.20 3.10
2397 2546 4.232221 CACTGAATTGCTGCCTTGTTAAG 58.768 43.478 0.00 0.00 0.00 1.85
2402 2551 3.848272 TTGCTGCCTTGTTAAGCATAC 57.152 42.857 0.00 0.00 45.75 2.39
2403 2552 2.789213 TGCTGCCTTGTTAAGCATACA 58.211 42.857 0.00 0.00 41.83 2.29
2404 2553 3.355378 TGCTGCCTTGTTAAGCATACAT 58.645 40.909 0.00 0.00 41.83 2.29
2405 2554 4.522114 TGCTGCCTTGTTAAGCATACATA 58.478 39.130 0.00 0.00 41.83 2.29
2452 2601 5.319140 ACATAGGTTTTGGAATTAACCGC 57.681 39.130 2.86 0.00 46.64 5.68
2462 2611 4.870363 TGGAATTAACCGCGTATACTACC 58.130 43.478 4.92 1.62 0.00 3.18
2522 2675 0.103026 CGAATGAGTCCAGCCGATCA 59.897 55.000 0.00 0.00 0.00 2.92
2607 2798 2.093500 TGCTGCTTCCAGTTCATATCGT 60.093 45.455 0.00 0.00 41.26 3.73
2680 2875 5.294734 ACATTTGAGAACAGCCCATTTTT 57.705 34.783 0.00 0.00 0.00 1.94
2763 2958 1.878953 CACTGCCGGTTTTCAGTACT 58.121 50.000 11.49 0.00 41.19 2.73
2764 2959 1.798813 CACTGCCGGTTTTCAGTACTC 59.201 52.381 11.49 0.00 41.19 2.59
2766 2961 0.035739 TGCCGGTTTTCAGTACTCCC 59.964 55.000 1.90 0.00 0.00 4.30
2769 2964 2.696506 CCGGTTTTCAGTACTCCCTTC 58.303 52.381 0.00 0.00 0.00 3.46
2770 2965 2.334838 CGGTTTTCAGTACTCCCTTCG 58.665 52.381 0.00 0.00 0.00 3.79
2775 4121 5.066893 GGTTTTCAGTACTCCCTTCGTTTTT 59.933 40.000 0.00 0.00 0.00 1.94
2776 4122 6.260714 GGTTTTCAGTACTCCCTTCGTTTTTA 59.739 38.462 0.00 0.00 0.00 1.52
2780 4126 9.558396 TTTCAGTACTCCCTTCGTTTTTATTTA 57.442 29.630 0.00 0.00 0.00 1.40
2783 4129 9.983804 CAGTACTCCCTTCGTTTTTATTTATTC 57.016 33.333 0.00 0.00 0.00 1.75
2785 4131 7.080353 ACTCCCTTCGTTTTTATTTATTCCG 57.920 36.000 0.00 0.00 0.00 4.30
2786 4132 5.882553 TCCCTTCGTTTTTATTTATTCCGC 58.117 37.500 0.00 0.00 0.00 5.54
2787 4133 5.415077 TCCCTTCGTTTTTATTTATTCCGCA 59.585 36.000 0.00 0.00 0.00 5.69
2791 4137 9.458374 CCTTCGTTTTTATTTATTCCGCATATT 57.542 29.630 0.00 0.00 0.00 1.28
2794 4140 9.601971 TCGTTTTTATTTATTCCGCATATTAGC 57.398 29.630 0.00 0.00 0.00 3.09
2795 4141 9.607285 CGTTTTTATTTATTCCGCATATTAGCT 57.393 29.630 0.00 0.00 0.00 3.32
2802 4148 8.840833 TTTATTCCGCATATTAGCTATTGTCA 57.159 30.769 0.00 0.00 0.00 3.58
2806 4152 7.744087 TCCGCATATTAGCTATTGTCAAAAT 57.256 32.000 0.00 0.00 0.00 1.82
2807 4153 8.165239 TCCGCATATTAGCTATTGTCAAAATT 57.835 30.769 0.00 0.00 0.00 1.82
2808 4154 9.278978 TCCGCATATTAGCTATTGTCAAAATTA 57.721 29.630 0.00 0.00 0.00 1.40
2809 4155 9.891828 CCGCATATTAGCTATTGTCAAAATTAA 57.108 29.630 0.00 0.00 0.00 1.40
2997 4343 7.462109 GACTTCAGTCAACTCTAATATGCAG 57.538 40.000 1.86 0.00 44.18 4.41
3018 4522 6.148811 TGCAGAGTAAATAAAAACGAAGGGAG 59.851 38.462 0.00 0.00 0.00 4.30
3034 4538 7.548967 ACGAAGGGAGTATTAAGAGAGAAAAG 58.451 38.462 0.00 0.00 0.00 2.27
3052 4589 4.473477 AAAGGATAGAAACCGAGTGGAG 57.527 45.455 0.00 0.00 39.21 3.86
3080 4618 6.312918 TCGTATGGAGATTTCCTTTTCTTTCG 59.687 38.462 3.60 0.00 44.36 3.46
3094 4632 6.400621 CCTTTTCTTTCGTCAACACCAAAAAC 60.401 38.462 0.00 0.00 0.00 2.43
3109 4647 5.040635 ACCAAAAACACACGATGATGTTTC 58.959 37.500 3.06 0.00 45.86 2.78
3215 4761 4.333926 TGTGCTTGGTTTTAATTTGGCAAC 59.666 37.500 0.00 0.00 0.00 4.17
3216 4762 4.574421 GTGCTTGGTTTTAATTTGGCAACT 59.426 37.500 0.00 0.00 37.61 3.16
3456 5005 0.251077 ACCTCCTCGTAAGTCACCGT 60.251 55.000 0.00 0.00 39.48 4.83
3457 5006 0.450983 CCTCCTCGTAAGTCACCGTC 59.549 60.000 0.00 0.00 39.48 4.79
3458 5007 0.096628 CTCCTCGTAAGTCACCGTCG 59.903 60.000 0.00 0.00 39.48 5.12
3459 5008 1.513586 CCTCGTAAGTCACCGTCGC 60.514 63.158 0.00 0.00 39.48 5.19
3460 5009 1.208358 CTCGTAAGTCACCGTCGCA 59.792 57.895 0.00 0.00 39.48 5.10
3462 5011 0.241749 TCGTAAGTCACCGTCGCATT 59.758 50.000 0.00 0.00 39.48 3.56
3463 5012 1.065358 CGTAAGTCACCGTCGCATTT 58.935 50.000 0.00 0.00 0.00 2.32
3465 5014 2.096614 CGTAAGTCACCGTCGCATTTTT 60.097 45.455 0.00 0.00 0.00 1.94
3466 5015 2.399396 AAGTCACCGTCGCATTTTTG 57.601 45.000 0.00 0.00 0.00 2.44
3467 5016 1.305201 AGTCACCGTCGCATTTTTGT 58.695 45.000 0.00 0.00 0.00 2.83
3468 5017 1.673920 AGTCACCGTCGCATTTTTGTT 59.326 42.857 0.00 0.00 0.00 2.83
3471 5020 3.304826 GTCACCGTCGCATTTTTGTTTTT 59.695 39.130 0.00 0.00 0.00 1.94
3472 5021 3.304559 TCACCGTCGCATTTTTGTTTTTG 59.695 39.130 0.00 0.00 0.00 2.44
3473 5022 3.061429 CACCGTCGCATTTTTGTTTTTGT 59.939 39.130 0.00 0.00 0.00 2.83
3474 5023 4.265556 CACCGTCGCATTTTTGTTTTTGTA 59.734 37.500 0.00 0.00 0.00 2.41
3475 5024 4.265792 ACCGTCGCATTTTTGTTTTTGTAC 59.734 37.500 0.00 0.00 0.00 2.90
3476 5025 4.420990 CGTCGCATTTTTGTTTTTGTACG 58.579 39.130 0.00 0.00 0.00 3.67
3484 5077 1.961793 TGTTTTTGTACGGCAGCTCT 58.038 45.000 0.00 0.00 0.00 4.09
3489 5082 0.384309 TTGTACGGCAGCTCTATCGG 59.616 55.000 0.00 0.00 0.00 4.18
3490 5083 0.750546 TGTACGGCAGCTCTATCGGT 60.751 55.000 0.00 0.00 0.00 4.69
3491 5084 1.233019 GTACGGCAGCTCTATCGGTA 58.767 55.000 0.00 0.00 0.00 4.02
3498 5104 1.271102 CAGCTCTATCGGTAGCTTCCC 59.729 57.143 3.47 0.00 46.82 3.97
3520 5126 4.913126 GTGGGTCTCACCGTCATC 57.087 61.111 0.00 0.00 39.83 2.92
3521 5127 1.218316 GTGGGTCTCACCGTCATCC 59.782 63.158 0.00 0.00 39.83 3.51
3522 5128 1.078528 TGGGTCTCACCGTCATCCT 59.921 57.895 0.00 0.00 39.83 3.24
3523 5129 0.970937 TGGGTCTCACCGTCATCCTC 60.971 60.000 0.00 0.00 39.83 3.71
3524 5130 1.677637 GGGTCTCACCGTCATCCTCC 61.678 65.000 0.00 0.00 39.83 4.30
3675 8753 1.219393 CGTCTTCTTCCTGGCCCTC 59.781 63.158 0.00 0.00 0.00 4.30
3684 8762 0.343372 TCCTGGCCCTCTACATCCTT 59.657 55.000 0.00 0.00 0.00 3.36
3723 8801 0.038744 CCAAGCCCAACATCTCCACT 59.961 55.000 0.00 0.00 0.00 4.00
3843 8921 3.041940 GCCAACACCGTCCTCGTG 61.042 66.667 0.00 0.00 35.01 4.35
3857 8935 1.135139 CCTCGTGTACATCCAGGACAG 59.865 57.143 10.75 0.00 0.00 3.51
3954 9032 1.003839 CTTCTACCGCCACAAGCCA 60.004 57.895 0.00 0.00 38.78 4.75
4135 12245 3.837146 CAGGTGCCCATACATCTATCTCT 59.163 47.826 0.00 0.00 27.23 3.10
4137 12247 5.481824 CAGGTGCCCATACATCTATCTCTAA 59.518 44.000 0.00 0.00 27.23 2.10
4138 12248 6.014242 CAGGTGCCCATACATCTATCTCTAAA 60.014 42.308 0.00 0.00 27.23 1.85
4139 12249 6.212388 AGGTGCCCATACATCTATCTCTAAAG 59.788 42.308 0.00 0.00 0.00 1.85
4140 12250 6.014156 GGTGCCCATACATCTATCTCTAAAGT 60.014 42.308 0.00 0.00 0.00 2.66
4141 12251 7.093992 GTGCCCATACATCTATCTCTAAAGTC 58.906 42.308 0.00 0.00 0.00 3.01
4142 12252 7.013220 TGCCCATACATCTATCTCTAAAGTCT 58.987 38.462 0.00 0.00 0.00 3.24
4156 12271 2.428888 AAGTCTAAACCACGTCGGAC 57.571 50.000 10.46 0.00 38.63 4.79
4165 12280 1.336517 ACCACGTCGGACTGTTATGTG 60.337 52.381 6.57 5.70 38.63 3.21
4166 12281 1.336517 CCACGTCGGACTGTTATGTGT 60.337 52.381 6.57 0.00 36.56 3.72
4175 12290 4.447724 CGGACTGTTATGTGTATATGTGGC 59.552 45.833 0.00 0.00 0.00 5.01
4190 12305 8.491134 TGTATATGTGGCCTCATTAGTTAACTT 58.509 33.333 24.41 0.69 0.00 2.66
4191 12306 9.991906 GTATATGTGGCCTCATTAGTTAACTTA 57.008 33.333 24.41 4.89 0.00 2.24
4214 12334 3.766691 CATTGCTGGGGGTGCAGC 61.767 66.667 7.55 7.55 41.71 5.25
4673 12811 2.435059 GAGAGCAAGGGCACGACC 60.435 66.667 0.00 0.00 44.61 4.79
4674 12812 3.240134 GAGAGCAAGGGCACGACCA 62.240 63.158 0.00 0.00 44.61 4.02
5033 13177 4.309950 GCCGAGGTCACCCACGTT 62.310 66.667 9.65 0.00 42.49 3.99
5069 13213 1.219393 GGAGAAACAGAGGCCGGAG 59.781 63.158 5.05 0.00 0.00 4.63
5128 13272 3.372440 AGTTCATCCTTGATGTTCCCC 57.628 47.619 4.17 0.00 40.55 4.81
5149 13293 2.684881 CCCAAAACCCTCATCAATCGAG 59.315 50.000 0.00 0.00 0.00 4.04
5154 13298 3.533606 ACCCTCATCAATCGAGTTCAG 57.466 47.619 0.00 0.00 0.00 3.02
5172 13316 9.011407 CGAGTTCAGAGTATTGTGAAATAGTAC 57.989 37.037 0.00 0.00 38.20 2.73
5179 13323 5.810587 AGTATTGTGAAATAGTACTGCACGG 59.189 40.000 5.39 0.00 32.39 4.94
5180 13324 3.671008 TGTGAAATAGTACTGCACGGT 57.329 42.857 5.39 0.00 32.39 4.83
5181 13325 4.787260 TGTGAAATAGTACTGCACGGTA 57.213 40.909 5.39 0.00 32.39 4.02
5182 13326 5.333299 TGTGAAATAGTACTGCACGGTAT 57.667 39.130 5.39 0.00 32.39 2.73
5183 13327 5.106442 TGTGAAATAGTACTGCACGGTATG 58.894 41.667 5.39 0.00 32.39 2.39
5184 13328 5.105675 TGTGAAATAGTACTGCACGGTATGA 60.106 40.000 5.39 0.00 32.39 2.15
5261 13406 4.628963 AAAGAAAAAGGGCAGATGCAAT 57.371 36.364 7.19 0.00 44.36 3.56
5263 13408 5.945144 AAGAAAAAGGGCAGATGCAATAT 57.055 34.783 7.19 0.00 44.36 1.28
5301 13454 9.981114 CAACTTTAAAACCCAATAAGATGAGTT 57.019 29.630 0.00 0.00 0.00 3.01
5323 13476 7.177878 AGTTCAGATGGAAAATGACCATTACT 58.822 34.615 0.00 0.00 46.48 2.24
5324 13477 7.671398 AGTTCAGATGGAAAATGACCATTACTT 59.329 33.333 0.00 0.00 46.48 2.24
5327 13480 8.869109 TCAGATGGAAAATGACCATTACTTTTT 58.131 29.630 0.00 0.00 46.48 1.94
5346 13499 2.452600 TTTAATGGAGCATCACCCCC 57.547 50.000 0.00 0.00 36.25 5.40
5348 13501 1.705002 TAATGGAGCATCACCCCCGG 61.705 60.000 0.00 0.00 36.25 5.73
5354 13507 4.181010 CATCACCCCCGGCCTCTG 62.181 72.222 0.00 0.00 0.00 3.35
5364 13517 2.202987 GGCCTCTGCATCCGACAG 60.203 66.667 0.00 0.00 40.13 3.51
5376 13529 0.956633 TCCGACAGATGTATACGGCC 59.043 55.000 6.69 0.00 42.73 6.13
5377 13530 0.671796 CCGACAGATGTATACGGCCA 59.328 55.000 2.24 0.00 37.32 5.36
5388 13782 3.573538 TGTATACGGCCATACCATTACGT 59.426 43.478 2.24 0.00 39.03 3.57
5391 13785 2.011222 ACGGCCATACCATTACGTTTG 58.989 47.619 2.24 0.00 39.03 2.93
5397 13791 5.974751 GGCCATACCATTACGTTTGTTATTG 59.025 40.000 0.00 0.00 38.86 1.90
5408 13802 9.790389 ATTACGTTTGTTATTGAAGTGAAAACA 57.210 25.926 0.00 0.00 0.00 2.83
5412 13806 8.311120 CGTTTGTTATTGAAGTGAAAACAACTC 58.689 33.333 0.00 0.00 39.14 3.01
5428 13822 3.172050 CAACTCTCAACTACGGATGTCG 58.828 50.000 0.00 0.00 45.88 4.35
5435 13829 3.940852 TCAACTACGGATGTCGCTAGTAA 59.059 43.478 0.00 0.00 43.89 2.24
5443 13837 4.556699 CGGATGTCGCTAGTAACATGATCA 60.557 45.833 14.43 0.00 36.28 2.92
5457 13851 9.896645 AGTAACATGATCACAAATGAGATTAGT 57.103 29.630 0.00 0.00 38.57 2.24
5460 13854 7.114754 ACATGATCACAAATGAGATTAGTGGT 58.885 34.615 0.00 0.00 38.57 4.16
5462 13856 6.475504 TGATCACAAATGAGATTAGTGGTGT 58.524 36.000 0.00 0.00 38.57 4.16
5463 13857 6.372381 TGATCACAAATGAGATTAGTGGTGTG 59.628 38.462 0.00 0.00 38.57 3.82
5464 13858 5.620206 TCACAAATGAGATTAGTGGTGTGT 58.380 37.500 0.00 0.00 37.12 3.72
5465 13859 5.469760 TCACAAATGAGATTAGTGGTGTGTG 59.530 40.000 0.00 0.00 37.12 3.82
5466 13860 4.216257 ACAAATGAGATTAGTGGTGTGTGC 59.784 41.667 0.00 0.00 0.00 4.57
5467 13861 2.078849 TGAGATTAGTGGTGTGTGCG 57.921 50.000 0.00 0.00 0.00 5.34
5468 13862 1.337728 TGAGATTAGTGGTGTGTGCGG 60.338 52.381 0.00 0.00 0.00 5.69
5469 13863 0.685097 AGATTAGTGGTGTGTGCGGT 59.315 50.000 0.00 0.00 0.00 5.68
5470 13864 0.796312 GATTAGTGGTGTGTGCGGTG 59.204 55.000 0.00 0.00 0.00 4.94
5471 13865 0.394938 ATTAGTGGTGTGTGCGGTGA 59.605 50.000 0.00 0.00 0.00 4.02
5472 13866 0.531090 TTAGTGGTGTGTGCGGTGAC 60.531 55.000 0.00 0.00 0.00 3.67
5473 13867 2.372040 TAGTGGTGTGTGCGGTGACC 62.372 60.000 0.00 0.00 0.00 4.02
5474 13868 3.787001 TGGTGTGTGCGGTGACCA 61.787 61.111 1.11 0.00 36.10 4.02
5511 14131 6.591062 TCGTTATACACCCATAAAAGTGACAC 59.409 38.462 0.00 0.00 37.43 3.67
5512 14132 6.183360 CGTTATACACCCATAAAAGTGACACC 60.183 42.308 0.84 0.00 37.43 4.16
5515 14135 3.218453 CACCCATAAAAGTGACACCACA 58.782 45.455 0.84 0.00 45.54 4.17
5537 14157 2.407562 TGTGATATGGGCAAGCCTCTA 58.592 47.619 11.40 3.55 36.10 2.43
5798 14418 5.451798 GGGAAACACTCAAATCAACACACAT 60.452 40.000 0.00 0.00 0.00 3.21
5800 14420 6.857964 GGAAACACTCAAATCAACACACATAG 59.142 38.462 0.00 0.00 0.00 2.23
5856 14477 6.771267 TGATCCAAATCATCCAAAGAGAGATG 59.229 38.462 0.00 0.00 41.05 2.90
5857 14478 5.443283 TCCAAATCATCCAAAGAGAGATGG 58.557 41.667 0.00 0.00 40.27 3.51
5876 14497 4.569719 TGGAACAAGATAGGGTTCTTCC 57.430 45.455 0.00 0.00 42.29 3.46
5889 14510 3.940319 GGTTCTTCCCAAGTCCTTAGAC 58.060 50.000 0.00 0.00 43.89 2.59
5917 14538 3.075866 GCTTGTTGCTTCTATGATGCC 57.924 47.619 3.59 0.00 38.95 4.40
5922 14543 3.374988 TGTTGCTTCTATGATGCCTTTCG 59.625 43.478 3.59 0.00 32.74 3.46
5926 14547 3.873952 GCTTCTATGATGCCTTTCGTCTT 59.126 43.478 0.00 0.00 0.00 3.01
5952 14573 4.993584 CGATTGGAGGTCTTGATATTCCTG 59.006 45.833 0.00 0.00 0.00 3.86
5972 14593 4.530161 CCTGAAGGAATCTACTCCTATGGG 59.470 50.000 0.00 0.00 45.59 4.00
5978 14599 2.400467 TCTACTCCTATGGGGCCTTC 57.600 55.000 0.84 0.00 34.39 3.46
6005 14626 3.197927 AGAGGAGGTCTTGATTCCACT 57.802 47.619 6.82 3.79 33.32 4.00
6009 14630 2.158885 GGAGGTCTTGATTCCACTAGGC 60.159 54.545 0.00 0.00 33.74 3.93
6011 14632 2.912956 AGGTCTTGATTCCACTAGGCAA 59.087 45.455 0.00 0.00 33.74 4.52
6013 14634 3.274288 GTCTTGATTCCACTAGGCAAGG 58.726 50.000 0.00 0.00 34.88 3.61
6020 14641 2.679082 TCCACTAGGCAAGGTAGATCC 58.321 52.381 0.00 0.00 33.74 3.36
6021 14642 1.694696 CCACTAGGCAAGGTAGATCCC 59.305 57.143 0.00 0.00 36.75 3.85
6042 14663 4.785301 CCACAAATGGGAGATACATGAGT 58.215 43.478 0.00 0.00 43.04 3.41
6046 14667 7.012704 CCACAAATGGGAGATACATGAGTAAAG 59.987 40.741 0.00 0.00 43.04 1.85
6049 14670 5.537300 TGGGAGATACATGAGTAAAGCTC 57.463 43.478 0.00 0.00 44.36 4.09
6055 14676 7.039363 GGAGATACATGAGTAAAGCTCTATGGT 60.039 40.741 0.00 0.00 44.41 3.55
6058 14679 9.331282 GATACATGAGTAAAGCTCTATGGTTTT 57.669 33.333 0.00 0.00 42.95 2.43
6087 14708 6.014647 TCTAGTGTTTGCTAACCCTAGAGAA 58.985 40.000 22.23 7.44 42.59 2.87
6096 14717 0.340208 ACCCTAGAGAAGAGGTGGGG 59.660 60.000 0.00 0.00 38.94 4.96
6098 14719 1.051556 CCTAGAGAAGAGGTGGGGGC 61.052 65.000 0.00 0.00 0.00 5.80
6113 14734 3.651423 GTGGGGGCAGGTATTTATAGTCT 59.349 47.826 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.639113 ACCTCAAAAAGAAGTATGAACACAA 57.361 32.000 0.00 0.00 0.00 3.33
37 38 8.740123 TTACCTCAAAAAGAAGTATGAACACA 57.260 30.769 0.00 0.00 0.00 3.72
50 51 1.135112 GCGGCCCATTACCTCAAAAAG 60.135 52.381 0.00 0.00 0.00 2.27
85 86 9.162764 GTCCATTGTGTGTAGTGAACTATAATT 57.837 33.333 0.00 0.00 0.00 1.40
87 88 7.101054 GGTCCATTGTGTGTAGTGAACTATAA 58.899 38.462 0.00 0.00 0.00 0.98
88 89 6.626402 CGGTCCATTGTGTGTAGTGAACTATA 60.626 42.308 0.00 0.00 0.00 1.31
97 98 2.936498 GGATTCGGTCCATTGTGTGTAG 59.064 50.000 3.29 0.00 46.96 2.74
111 112 1.666888 GCTTGTGCTGTTTGGATTCGG 60.667 52.381 0.00 0.00 36.03 4.30
112 113 1.666888 GGCTTGTGCTGTTTGGATTCG 60.667 52.381 0.00 0.00 39.59 3.34
132 154 1.135046 CTGAGTCAGTTGTGCGTGAG 58.865 55.000 12.28 0.00 0.00 3.51
141 163 1.000283 CACGCTCTTCCTGAGTCAGTT 60.000 52.381 18.74 0.00 44.41 3.16
144 166 0.884514 CTCACGCTCTTCCTGAGTCA 59.115 55.000 0.00 0.00 44.41 3.41
149 171 0.735632 GACTGCTCACGCTCTTCCTG 60.736 60.000 0.00 0.00 36.97 3.86
151 173 1.446966 GGACTGCTCACGCTCTTCC 60.447 63.158 0.00 0.00 36.97 3.46
159 181 4.141937 TGTCTATGTAATGGGACTGCTCAC 60.142 45.833 0.00 0.00 33.60 3.51
167 189 7.126573 TCCATGTTAGTTGTCTATGTAATGGGA 59.873 37.037 0.00 0.00 0.00 4.37
168 190 7.279615 TCCATGTTAGTTGTCTATGTAATGGG 58.720 38.462 0.00 0.00 0.00 4.00
198 220 4.557496 GCCGCAAAGTTTCTCTCAATTTCT 60.557 41.667 0.00 0.00 0.00 2.52
203 225 0.951558 GGCCGCAAAGTTTCTCTCAA 59.048 50.000 0.00 0.00 0.00 3.02
218 240 1.466167 CTGACATCAAGAGTTTGGCCG 59.534 52.381 0.00 0.00 34.97 6.13
249 271 2.248248 TGTATCGCTCAGGGATAAGGG 58.752 52.381 12.82 0.00 38.76 3.95
254 276 6.836007 TCTTATATGATGTATCGCTCAGGGAT 59.164 38.462 9.53 9.53 38.69 3.85
255 277 6.187682 TCTTATATGATGTATCGCTCAGGGA 58.812 40.000 0.00 0.00 0.00 4.20
259 281 9.521503 GCTAATTCTTATATGATGTATCGCTCA 57.478 33.333 0.00 0.00 0.00 4.26
270 292 9.679661 TGGTGTTCAAAGCTAATTCTTATATGA 57.320 29.630 0.00 0.00 0.00 2.15
275 297 7.450074 TCTCTGGTGTTCAAAGCTAATTCTTA 58.550 34.615 0.00 0.00 0.00 2.10
276 298 6.299141 TCTCTGGTGTTCAAAGCTAATTCTT 58.701 36.000 0.00 0.00 0.00 2.52
284 306 2.161211 GCTCATCTCTGGTGTTCAAAGC 59.839 50.000 0.00 0.00 0.00 3.51
290 312 3.262660 TCAGATTGCTCATCTCTGGTGTT 59.737 43.478 8.94 0.00 40.67 3.32
342 364 2.363406 GCCTCAGCATTTGCCCCT 60.363 61.111 0.00 0.00 43.38 4.79
353 375 1.797046 CTGCTATGCGTTATGCCTCAG 59.203 52.381 0.00 0.00 45.60 3.35
354 376 1.138859 ACTGCTATGCGTTATGCCTCA 59.861 47.619 0.00 0.00 45.60 3.86
382 404 1.212935 AGTGCCTGAACTTGAGTTGGT 59.787 47.619 0.30 0.00 38.56 3.67
399 421 4.037208 AGCAGATGTTCCTTTGACAAAGTG 59.963 41.667 23.07 14.94 36.77 3.16
435 457 4.926238 GTGATTCGTGATCATCATAGGGAC 59.074 45.833 0.00 0.00 46.01 4.46
462 484 3.206957 GGGTAAACGGATGCGGGC 61.207 66.667 12.44 0.00 0.00 6.13
472 494 3.404899 TCCATTTCGACACTGGGTAAAC 58.595 45.455 7.13 0.00 0.00 2.01
490 512 1.169661 AATGTTGACGCCGCTTTCCA 61.170 50.000 0.00 0.00 0.00 3.53
498 520 3.376859 TGGTGATGATAAATGTTGACGCC 59.623 43.478 0.00 0.00 0.00 5.68
579 630 3.359695 TTTACCATTGCACCCTAGACC 57.640 47.619 0.00 0.00 0.00 3.85
617 668 5.012664 TGGCTAAGTTAATCAGAGTTGGTGA 59.987 40.000 0.00 0.00 0.00 4.02
646 697 1.841302 TTGCTGCCTCCACACTAGGG 61.841 60.000 0.00 0.00 34.46 3.53
649 700 0.321671 GACTTGCTGCCTCCACACTA 59.678 55.000 0.00 0.00 0.00 2.74
784 874 1.974265 TGGACATCGCAACCAGAAAA 58.026 45.000 0.00 0.00 0.00 2.29
947 1046 1.003573 GGAGGGAGGTGAGATGGGT 59.996 63.158 0.00 0.00 0.00 4.51
954 1053 0.858598 TTAGGGAGGGAGGGAGGTGA 60.859 60.000 0.00 0.00 0.00 4.02
956 1055 0.860901 AGTTAGGGAGGGAGGGAGGT 60.861 60.000 0.00 0.00 0.00 3.85
958 1057 1.133104 GGTAGTTAGGGAGGGAGGGAG 60.133 61.905 0.00 0.00 0.00 4.30
963 1067 2.515429 ACGTATGGTAGTTAGGGAGGGA 59.485 50.000 0.00 0.00 0.00 4.20
965 1069 6.240894 TGTATACGTATGGTAGTTAGGGAGG 58.759 44.000 18.37 0.00 33.84 4.30
973 1077 4.077822 GCTCCCTGTATACGTATGGTAGT 58.922 47.826 18.37 0.00 33.84 2.73
983 1087 1.000955 CCATGGACGCTCCCTGTATAC 59.999 57.143 5.56 0.00 35.03 1.47
984 1088 1.338107 CCATGGACGCTCCCTGTATA 58.662 55.000 5.56 0.00 35.03 1.47
986 1090 2.731571 GCCATGGACGCTCCCTGTA 61.732 63.158 18.40 0.00 35.03 2.74
1175 1279 1.661341 GTGGAGCAGATGATTTCGCT 58.339 50.000 0.00 0.00 37.07 4.93
1201 1306 1.672356 GAAGCAAGCCGGAGAAGCA 60.672 57.895 5.05 0.00 0.00 3.91
1370 1481 2.154567 ACATGAGCCTCCATTGCAAT 57.845 45.000 5.99 5.99 0.00 3.56
1372 1483 2.025981 ACTAACATGAGCCTCCATTGCA 60.026 45.455 0.00 0.00 0.00 4.08
1375 1486 5.396884 GGAGTAACTAACATGAGCCTCCATT 60.397 44.000 0.00 0.00 37.71 3.16
1416 1527 3.111853 TCGATCGTACGTACCCTACAT 57.888 47.619 19.67 4.56 34.70 2.29
1437 1548 6.707440 TGTGACCAGCAGAGAAAAATAAAA 57.293 33.333 0.00 0.00 0.00 1.52
1594 1712 1.705337 CGTTCCTATGCCCGCAGTTG 61.705 60.000 0.00 0.00 0.00 3.16
1697 1831 1.839994 TGGATGGCTCCTAGTTCTTGG 59.160 52.381 4.92 0.00 42.59 3.61
1698 1832 3.495806 GGATGGATGGCTCCTAGTTCTTG 60.496 52.174 4.92 0.00 42.59 3.02
1699 1833 2.708325 GGATGGATGGCTCCTAGTTCTT 59.292 50.000 4.92 0.00 42.59 2.52
1700 1834 2.334023 GGATGGATGGCTCCTAGTTCT 58.666 52.381 4.92 0.00 42.59 3.01
1706 1840 1.840650 CGAGGGATGGATGGCTCCT 60.841 63.158 4.92 0.00 42.59 3.69
1725 1859 2.281208 CGGCCACTCAAAACCGGA 60.281 61.111 9.46 0.00 41.95 5.14
1728 1862 1.652563 GACACGGCCACTCAAAACC 59.347 57.895 2.24 0.00 0.00 3.27
1766 1900 4.157120 AGCGCGTGGGTGGGATAC 62.157 66.667 8.43 0.00 0.00 2.24
1786 1920 2.152830 GAGAGACGGGCGTATGTCTAT 58.847 52.381 5.72 3.34 45.09 1.98
1804 1938 5.215903 CGTACTACATCCATTACTGCAGAG 58.784 45.833 23.35 5.39 0.00 3.35
1882 2016 2.703007 GAGACGGAGGGAGTACTACCTA 59.297 54.545 27.44 0.00 46.12 3.08
1885 2019 2.706339 TGAGACGGAGGGAGTACTAC 57.294 55.000 0.00 0.00 0.00 2.73
1886 2020 3.726557 TTTGAGACGGAGGGAGTACTA 57.273 47.619 0.00 0.00 0.00 1.82
1887 2021 2.599408 TTTGAGACGGAGGGAGTACT 57.401 50.000 0.00 0.00 0.00 2.73
1888 2022 3.889520 ATTTTGAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
1889 2023 5.021458 ACTTATTTTGAGACGGAGGGAGTA 58.979 41.667 0.00 0.00 0.00 2.59
1890 2024 3.838903 ACTTATTTTGAGACGGAGGGAGT 59.161 43.478 0.00 0.00 0.00 3.85
1891 2025 4.184629 CACTTATTTTGAGACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
1892 2026 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
1893 2027 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
1894 2028 4.822026 AGACACTTATTTTGAGACGGAGG 58.178 43.478 0.00 0.00 0.00 4.30
1895 2029 5.926542 TCAAGACACTTATTTTGAGACGGAG 59.073 40.000 0.00 0.00 0.00 4.63
1896 2030 5.694910 GTCAAGACACTTATTTTGAGACGGA 59.305 40.000 0.00 0.00 30.86 4.69
1897 2031 5.107065 GGTCAAGACACTTATTTTGAGACGG 60.107 44.000 2.29 0.00 30.86 4.79
1898 2032 5.696724 AGGTCAAGACACTTATTTTGAGACG 59.303 40.000 2.29 0.00 30.86 4.18
1899 2033 7.497925 AAGGTCAAGACACTTATTTTGAGAC 57.502 36.000 2.29 0.00 30.86 3.36
1900 2034 8.429641 ACTAAGGTCAAGACACTTATTTTGAGA 58.570 33.333 2.29 0.00 30.86 3.27
1901 2035 8.608844 ACTAAGGTCAAGACACTTATTTTGAG 57.391 34.615 2.29 0.67 30.86 3.02
1938 2072 9.116067 AGTGTCTCAACTTTATACTAGCTCTAG 57.884 37.037 0.00 2.55 39.04 2.43
1939 2073 9.463902 AAGTGTCTCAACTTTATACTAGCTCTA 57.536 33.333 0.00 0.00 37.05 2.43
1940 2074 7.948034 AGTGTCTCAACTTTATACTAGCTCT 57.052 36.000 0.00 0.00 0.00 4.09
1949 2083 8.793592 GTCCCAAAATAAGTGTCTCAACTTTAT 58.206 33.333 0.00 0.00 40.77 1.40
1950 2084 7.041644 CGTCCCAAAATAAGTGTCTCAACTTTA 60.042 37.037 0.00 0.00 40.77 1.85
1951 2085 6.238648 CGTCCCAAAATAAGTGTCTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
1952 2086 5.238650 CGTCCCAAAATAAGTGTCTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
1953 2087 4.755123 CGTCCCAAAATAAGTGTCTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
1954 2088 4.083484 CCGTCCCAAAATAAGTGTCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
1955 2089 4.069304 CCGTCCCAAAATAAGTGTCTCAA 58.931 43.478 0.00 0.00 0.00 3.02
1956 2090 3.325425 TCCGTCCCAAAATAAGTGTCTCA 59.675 43.478 0.00 0.00 0.00 3.27
1957 2091 3.933332 CTCCGTCCCAAAATAAGTGTCTC 59.067 47.826 0.00 0.00 0.00 3.36
1958 2092 3.581332 TCTCCGTCCCAAAATAAGTGTCT 59.419 43.478 0.00 0.00 0.00 3.41
1959 2093 3.934068 TCTCCGTCCCAAAATAAGTGTC 58.066 45.455 0.00 0.00 0.00 3.67
1960 2094 4.360951 TTCTCCGTCCCAAAATAAGTGT 57.639 40.909 0.00 0.00 0.00 3.55
1961 2095 5.699097 TTTTCTCCGTCCCAAAATAAGTG 57.301 39.130 0.00 0.00 0.00 3.16
1962 2096 7.173032 AGTATTTTCTCCGTCCCAAAATAAGT 58.827 34.615 0.00 0.00 35.03 2.24
1963 2097 7.625828 AGTATTTTCTCCGTCCCAAAATAAG 57.374 36.000 0.00 0.00 35.03 1.73
1964 2098 9.689501 ATTAGTATTTTCTCCGTCCCAAAATAA 57.310 29.630 0.00 0.00 35.03 1.40
1966 2100 9.117183 GTATTAGTATTTTCTCCGTCCCAAAAT 57.883 33.333 0.00 0.00 34.75 1.82
1967 2101 8.323567 AGTATTAGTATTTTCTCCGTCCCAAAA 58.676 33.333 0.00 0.00 0.00 2.44
1968 2102 7.854337 AGTATTAGTATTTTCTCCGTCCCAAA 58.146 34.615 0.00 0.00 0.00 3.28
1969 2103 7.427989 AGTATTAGTATTTTCTCCGTCCCAA 57.572 36.000 0.00 0.00 0.00 4.12
1970 2104 7.781693 AGTAGTATTAGTATTTTCTCCGTCCCA 59.218 37.037 0.00 0.00 0.00 4.37
1971 2105 8.175925 AGTAGTATTAGTATTTTCTCCGTCCC 57.824 38.462 0.00 0.00 0.00 4.46
1989 2123 9.820725 CGGTCTATAGCAATCTAGTAGTAGTAT 57.179 37.037 4.51 0.00 0.00 2.12
1990 2124 8.256605 CCGGTCTATAGCAATCTAGTAGTAGTA 58.743 40.741 4.51 0.00 0.00 1.82
1991 2125 7.104939 CCGGTCTATAGCAATCTAGTAGTAGT 58.895 42.308 4.51 0.00 0.00 2.73
1992 2126 6.037391 GCCGGTCTATAGCAATCTAGTAGTAG 59.963 46.154 1.90 0.00 0.00 2.57
1993 2127 5.879223 GCCGGTCTATAGCAATCTAGTAGTA 59.121 44.000 1.90 0.00 0.00 1.82
1994 2128 4.701171 GCCGGTCTATAGCAATCTAGTAGT 59.299 45.833 1.90 0.00 0.00 2.73
1995 2129 4.201832 CGCCGGTCTATAGCAATCTAGTAG 60.202 50.000 1.90 0.00 0.00 2.57
1996 2130 3.688185 CGCCGGTCTATAGCAATCTAGTA 59.312 47.826 1.90 0.00 0.00 1.82
1997 2131 2.488545 CGCCGGTCTATAGCAATCTAGT 59.511 50.000 1.90 0.00 0.00 2.57
1998 2132 2.159366 CCGCCGGTCTATAGCAATCTAG 60.159 54.545 1.90 0.00 0.00 2.43
2004 2138 2.520982 AGCCGCCGGTCTATAGCA 60.521 61.111 4.45 0.00 0.00 3.49
2039 2173 0.593128 GCACCGTGCTCTTTCATTGT 59.407 50.000 16.51 0.00 40.96 2.71
2073 2207 0.607620 GCAGCATCCTAGGGCTCTAG 59.392 60.000 14.19 14.19 41.95 2.43
2079 2213 0.969149 TGTATCGCAGCATCCTAGGG 59.031 55.000 9.46 0.00 0.00 3.53
2173 2313 4.396166 ACATTGCTGCCTACTGTTTATGAC 59.604 41.667 0.00 0.00 0.00 3.06
2206 2346 0.951558 AAATCGTTGCTTCAGCCGTT 59.048 45.000 0.00 0.00 41.18 4.44
2292 2440 4.137116 TCCTATGGAAACGAACATGAGG 57.863 45.455 0.00 0.00 0.00 3.86
2358 2507 9.159364 CAATTCAGTGTTCTCTTCATATGAGAA 57.841 33.333 5.39 3.79 45.05 2.87
2359 2508 7.279536 GCAATTCAGTGTTCTCTTCATATGAGA 59.720 37.037 5.39 5.29 38.62 3.27
2360 2509 7.280428 AGCAATTCAGTGTTCTCTTCATATGAG 59.720 37.037 5.39 1.02 0.00 2.90
2361 2510 7.065443 CAGCAATTCAGTGTTCTCTTCATATGA 59.935 37.037 0.00 0.00 0.00 2.15
2362 2511 7.187480 CAGCAATTCAGTGTTCTCTTCATATG 58.813 38.462 0.00 0.00 0.00 1.78
2363 2512 6.183360 GCAGCAATTCAGTGTTCTCTTCATAT 60.183 38.462 0.00 0.00 0.00 1.78
2364 2513 5.122869 GCAGCAATTCAGTGTTCTCTTCATA 59.877 40.000 0.00 0.00 0.00 2.15
2365 2514 4.082895 GCAGCAATTCAGTGTTCTCTTCAT 60.083 41.667 0.00 0.00 0.00 2.57
2366 2515 3.251729 GCAGCAATTCAGTGTTCTCTTCA 59.748 43.478 0.00 0.00 0.00 3.02
2367 2516 3.365767 GGCAGCAATTCAGTGTTCTCTTC 60.366 47.826 0.00 0.00 0.00 2.87
2368 2517 2.555757 GGCAGCAATTCAGTGTTCTCTT 59.444 45.455 0.00 0.00 0.00 2.85
2369 2518 2.157738 GGCAGCAATTCAGTGTTCTCT 58.842 47.619 0.00 0.00 0.00 3.10
2370 2519 2.157738 AGGCAGCAATTCAGTGTTCTC 58.842 47.619 0.00 0.00 0.00 2.87
2371 2520 2.283145 AGGCAGCAATTCAGTGTTCT 57.717 45.000 0.00 0.00 0.00 3.01
2372 2521 2.035066 ACAAGGCAGCAATTCAGTGTTC 59.965 45.455 0.00 0.00 0.00 3.18
2373 2522 2.034124 ACAAGGCAGCAATTCAGTGTT 58.966 42.857 0.00 0.00 0.00 3.32
2374 2523 1.696063 ACAAGGCAGCAATTCAGTGT 58.304 45.000 0.00 0.00 0.00 3.55
2375 2524 2.806608 AACAAGGCAGCAATTCAGTG 57.193 45.000 0.00 0.00 0.00 3.66
2376 2525 3.305608 GCTTAACAAGGCAGCAATTCAGT 60.306 43.478 0.00 0.00 33.45 3.41
2377 2526 3.248266 GCTTAACAAGGCAGCAATTCAG 58.752 45.455 0.00 0.00 33.45 3.02
2378 2527 2.627221 TGCTTAACAAGGCAGCAATTCA 59.373 40.909 0.00 0.00 40.61 2.57
2379 2528 3.302365 TGCTTAACAAGGCAGCAATTC 57.698 42.857 0.00 0.00 40.61 2.17
2380 2529 3.967332 ATGCTTAACAAGGCAGCAATT 57.033 38.095 0.00 0.00 46.35 2.32
2397 2546 0.868406 GACAAGCCGGCTATGTATGC 59.132 55.000 33.07 18.57 0.00 3.14
2402 2551 1.153289 AGCAGACAAGCCGGCTATG 60.153 57.895 33.07 29.05 35.88 2.23
2403 2552 1.153289 CAGCAGACAAGCCGGCTAT 60.153 57.895 33.07 22.14 35.88 2.97
2404 2553 2.265739 CAGCAGACAAGCCGGCTA 59.734 61.111 33.07 0.00 35.88 3.93
2452 2601 3.119531 TGACCGTTGGTTGGTAGTATACG 60.120 47.826 0.00 0.00 38.24 3.06
2462 2611 1.644913 GGTTCGTGACCGTTGGTTG 59.355 57.895 0.00 0.00 39.00 3.77
2522 2675 5.924254 TGAGCAATTAAATATAGCGCGTACT 59.076 36.000 8.43 0.00 0.00 2.73
2557 2710 4.110493 GCGAGGTGCGAGCTTATT 57.890 55.556 0.00 0.00 44.57 1.40
2623 2814 3.252458 GGGACCACAACACTTGTAATCAC 59.748 47.826 0.00 0.00 43.23 3.06
2680 2875 5.163519 CCAGCTTCAGGAACAAAAGAAAAGA 60.164 40.000 0.00 0.00 0.00 2.52
2742 2937 1.225376 TACTGAAAACCGGCAGTGCG 61.225 55.000 19.17 4.48 44.47 5.34
2763 2958 5.415077 TGCGGAATAAATAAAAACGAAGGGA 59.585 36.000 0.00 0.00 0.00 4.20
2764 2959 5.642686 TGCGGAATAAATAAAAACGAAGGG 58.357 37.500 0.00 0.00 0.00 3.95
2769 2964 9.607285 AGCTAATATGCGGAATAAATAAAAACG 57.393 29.630 0.00 0.00 38.13 3.60
2776 4122 9.448438 TGACAATAGCTAATATGCGGAATAAAT 57.552 29.630 0.00 0.00 38.13 1.40
2780 4126 7.744087 TTTGACAATAGCTAATATGCGGAAT 57.256 32.000 0.00 0.00 38.13 3.01
2783 4129 9.891828 TTAATTTTGACAATAGCTAATATGCGG 57.108 29.630 0.00 0.00 38.13 5.69
2973 4319 7.261325 TCTGCATATTAGAGTTGACTGAAGTC 58.739 38.462 3.41 3.41 44.97 3.01
2974 4320 7.175347 TCTGCATATTAGAGTTGACTGAAGT 57.825 36.000 0.00 0.00 0.00 3.01
2975 4321 7.697352 CTCTGCATATTAGAGTTGACTGAAG 57.303 40.000 5.84 0.00 37.48 3.02
2990 4336 8.621286 CCCTTCGTTTTTATTTACTCTGCATAT 58.379 33.333 0.00 0.00 0.00 1.78
2991 4337 7.825270 TCCCTTCGTTTTTATTTACTCTGCATA 59.175 33.333 0.00 0.00 0.00 3.14
2993 4339 5.998981 TCCCTTCGTTTTTATTTACTCTGCA 59.001 36.000 0.00 0.00 0.00 4.41
2994 4340 6.148976 ACTCCCTTCGTTTTTATTTACTCTGC 59.851 38.462 0.00 0.00 0.00 4.26
2995 4341 7.668525 ACTCCCTTCGTTTTTATTTACTCTG 57.331 36.000 0.00 0.00 0.00 3.35
2996 4342 9.955102 AATACTCCCTTCGTTTTTATTTACTCT 57.045 29.630 0.00 0.00 0.00 3.24
3003 4507 9.819267 CTCTCTTAATACTCCCTTCGTTTTTAT 57.181 33.333 0.00 0.00 0.00 1.40
3005 4509 7.904205 TCTCTCTTAATACTCCCTTCGTTTTT 58.096 34.615 0.00 0.00 0.00 1.94
3006 4510 7.477945 TCTCTCTTAATACTCCCTTCGTTTT 57.522 36.000 0.00 0.00 0.00 2.43
3007 4511 7.477945 TTCTCTCTTAATACTCCCTTCGTTT 57.522 36.000 0.00 0.00 0.00 3.60
3010 4514 6.981559 CCTTTTCTCTCTTAATACTCCCTTCG 59.018 42.308 0.00 0.00 0.00 3.79
3014 4518 9.369672 TCTATCCTTTTCTCTCTTAATACTCCC 57.630 37.037 0.00 0.00 0.00 4.30
3034 4538 1.757699 AGCTCCACTCGGTTTCTATCC 59.242 52.381 0.00 0.00 0.00 2.59
3052 4589 5.586643 AGAAAAGGAAATCTCCATACGAAGC 59.413 40.000 0.00 0.00 45.24 3.86
3080 4618 3.204597 TCGTGTGTTTTTGGTGTTGAC 57.795 42.857 0.00 0.00 0.00 3.18
3094 4632 3.665409 GCACAAAGAAACATCATCGTGTG 59.335 43.478 0.00 0.00 39.08 3.82
3109 4647 1.153353 ACCGTAACCATCGCACAAAG 58.847 50.000 0.00 0.00 0.00 2.77
3210 4756 3.595758 ACTGCACCGCAAGTTGCC 61.596 61.111 21.84 8.48 41.12 4.52
3215 4761 1.617755 CTCGTACACTGCACCGCAAG 61.618 60.000 0.00 0.00 38.41 4.01
3216 4762 1.663388 CTCGTACACTGCACCGCAA 60.663 57.895 0.00 0.00 38.41 4.85
3456 5005 3.243177 GCCGTACAAAAACAAAAATGCGA 59.757 39.130 0.00 0.00 0.00 5.10
3457 5006 3.000322 TGCCGTACAAAAACAAAAATGCG 60.000 39.130 0.00 0.00 0.00 4.73
3458 5007 4.513581 CTGCCGTACAAAAACAAAAATGC 58.486 39.130 0.00 0.00 0.00 3.56
3459 5008 4.269844 AGCTGCCGTACAAAAACAAAAATG 59.730 37.500 0.00 0.00 0.00 2.32
3460 5009 4.438148 AGCTGCCGTACAAAAACAAAAAT 58.562 34.783 0.00 0.00 0.00 1.82
3462 5011 3.129638 AGAGCTGCCGTACAAAAACAAAA 59.870 39.130 0.00 0.00 0.00 2.44
3463 5012 2.685897 AGAGCTGCCGTACAAAAACAAA 59.314 40.909 0.00 0.00 0.00 2.83
3465 5014 1.961793 AGAGCTGCCGTACAAAAACA 58.038 45.000 0.00 0.00 0.00 2.83
3466 5015 3.241995 CGATAGAGCTGCCGTACAAAAAC 60.242 47.826 0.00 0.00 39.76 2.43
3467 5016 2.927477 CGATAGAGCTGCCGTACAAAAA 59.073 45.455 0.00 0.00 39.76 1.94
3468 5017 2.536365 CGATAGAGCTGCCGTACAAAA 58.464 47.619 0.00 0.00 39.76 2.44
3471 5020 0.750546 ACCGATAGAGCTGCCGTACA 60.751 55.000 0.00 0.00 39.76 2.90
3472 5021 1.197264 CTACCGATAGAGCTGCCGTAC 59.803 57.143 0.00 0.00 39.76 3.67
3473 5022 1.520494 CTACCGATAGAGCTGCCGTA 58.480 55.000 0.00 0.00 39.76 4.02
3474 5023 1.797211 GCTACCGATAGAGCTGCCGT 61.797 60.000 0.00 0.00 35.73 5.68
3475 5024 1.081108 GCTACCGATAGAGCTGCCG 60.081 63.158 0.00 0.00 35.73 5.69
3476 5025 4.976996 GCTACCGATAGAGCTGCC 57.023 61.111 0.00 0.00 35.73 4.85
3489 5082 2.267961 CCACCCACGGGAAGCTAC 59.732 66.667 9.72 0.00 38.96 3.58
3515 5121 1.964223 TCATTAGCGGAGGAGGATGAC 59.036 52.381 0.00 0.00 0.00 3.06
3518 5124 1.821753 CGATCATTAGCGGAGGAGGAT 59.178 52.381 0.00 0.00 0.00 3.24
3519 5125 1.248486 CGATCATTAGCGGAGGAGGA 58.752 55.000 0.00 0.00 0.00 3.71
3520 5126 0.389166 GCGATCATTAGCGGAGGAGG 60.389 60.000 0.00 0.00 34.37 4.30
3521 5127 3.114558 GCGATCATTAGCGGAGGAG 57.885 57.895 0.00 0.00 34.37 3.69
3619 8697 2.639286 CTTGTGGTCGCAGTTGGC 59.361 61.111 0.00 0.00 39.90 4.52
3675 8753 4.420143 CCGACGGCAAGGATGTAG 57.580 61.111 0.00 0.00 0.00 2.74
3843 8921 1.341531 CCGATCCTGTCCTGGATGTAC 59.658 57.143 10.09 0.00 46.00 2.90
3954 9032 1.316706 CGAAGGAGCTCTCGGAGGTT 61.317 60.000 14.64 0.00 40.67 3.50
4135 12245 3.569701 AGTCCGACGTGGTTTAGACTTTA 59.430 43.478 0.00 0.00 39.52 1.85
4137 12247 1.959282 AGTCCGACGTGGTTTAGACTT 59.041 47.619 0.00 0.00 39.52 3.01
4138 12248 1.268899 CAGTCCGACGTGGTTTAGACT 59.731 52.381 0.00 0.00 39.52 3.24
4139 12249 1.000938 ACAGTCCGACGTGGTTTAGAC 60.001 52.381 0.00 0.00 39.52 2.59
4140 12250 1.321474 ACAGTCCGACGTGGTTTAGA 58.679 50.000 0.00 0.00 39.52 2.10
4141 12251 2.144482 AACAGTCCGACGTGGTTTAG 57.856 50.000 0.00 0.00 39.52 1.85
4142 12252 3.005684 ACATAACAGTCCGACGTGGTTTA 59.994 43.478 0.00 0.00 39.52 2.01
4145 12255 0.963962 ACATAACAGTCCGACGTGGT 59.036 50.000 0.00 0.00 39.52 4.16
4146 12256 1.336517 ACACATAACAGTCCGACGTGG 60.337 52.381 0.00 0.00 40.09 4.94
4147 12257 2.060326 ACACATAACAGTCCGACGTG 57.940 50.000 0.00 0.00 0.00 4.49
4156 12271 5.610398 TGAGGCCACATATACACATAACAG 58.390 41.667 5.01 0.00 0.00 3.16
4165 12280 8.904099 AAGTTAACTAATGAGGCCACATATAC 57.096 34.615 16.56 8.22 0.00 1.47
4175 12290 7.865706 ATGGCAGTTAAGTTAACTAATGAGG 57.134 36.000 24.33 13.94 46.66 3.86
4190 12305 1.000233 CCCCCAGCAATGGCAGTTA 60.000 57.895 0.00 0.00 44.61 2.24
4191 12306 2.284112 CCCCCAGCAATGGCAGTT 60.284 61.111 0.00 0.00 44.61 3.16
4192 12307 3.593680 ACCCCCAGCAATGGCAGT 61.594 61.111 0.00 0.00 44.61 4.40
4214 12334 4.748679 GCCGCTTTGCTCAGCACG 62.749 66.667 0.00 0.00 38.71 5.34
4571 12709 1.244816 TCACGATGTGGAAGACGAGT 58.755 50.000 0.00 0.00 33.87 4.18
4673 12811 0.319383 CGAAGATGGAGAGCGGGATG 60.319 60.000 0.00 0.00 0.00 3.51
4674 12812 0.757188 ACGAAGATGGAGAGCGGGAT 60.757 55.000 0.00 0.00 0.00 3.85
4969 13113 2.548067 GCGAAGAAGACAAGGAGGTTGA 60.548 50.000 0.00 0.00 38.60 3.18
5095 13239 1.929836 GATGAACTTCTACTGCGCCTG 59.070 52.381 4.18 0.00 0.00 4.85
5128 13272 2.684881 CTCGATTGATGAGGGTTTTGGG 59.315 50.000 0.00 0.00 0.00 4.12
5149 13293 8.596380 GCAGTACTATTTCACAATACTCTGAAC 58.404 37.037 0.00 0.00 0.00 3.18
5154 13298 6.019801 CCGTGCAGTACTATTTCACAATACTC 60.020 42.308 0.00 0.00 0.00 2.59
5172 13316 4.126437 TGTTTCCATATCATACCGTGCAG 58.874 43.478 0.00 0.00 0.00 4.41
5179 13323 9.651913 ATTGTGGTTTTTGTTTCCATATCATAC 57.348 29.630 0.00 0.00 33.68 2.39
5181 13325 9.874205 CTATTGTGGTTTTTGTTTCCATATCAT 57.126 29.630 0.00 0.00 33.68 2.45
5182 13326 7.816995 GCTATTGTGGTTTTTGTTTCCATATCA 59.183 33.333 0.00 0.00 33.68 2.15
5183 13327 8.034804 AGCTATTGTGGTTTTTGTTTCCATATC 58.965 33.333 0.00 0.00 33.68 1.63
5184 13328 7.906327 AGCTATTGTGGTTTTTGTTTCCATAT 58.094 30.769 0.00 0.00 33.68 1.78
5235 13380 5.304101 TGCATCTGCCCTTTTTCTTTTCTTA 59.696 36.000 0.00 0.00 41.18 2.10
5263 13408 8.041323 TGGGTTTTAAAGTTGATGTTTAGCAAA 58.959 29.630 0.00 0.00 33.43 3.68
5274 13419 9.362151 ACTCATCTTATTGGGTTTTAAAGTTGA 57.638 29.630 0.00 0.00 0.00 3.18
5281 13426 9.177608 CATCTGAACTCATCTTATTGGGTTTTA 57.822 33.333 0.00 0.00 40.37 1.52
5301 13454 8.421249 AAAAGTAATGGTCATTTTCCATCTGA 57.579 30.769 1.28 0.00 43.85 3.27
5327 13480 1.409521 CGGGGGTGATGCTCCATTAAA 60.410 52.381 0.00 0.00 40.42 1.52
5331 13484 3.492353 CCGGGGGTGATGCTCCAT 61.492 66.667 0.00 0.00 40.42 3.41
5337 13490 4.181010 CAGAGGCCGGGGGTGATG 62.181 72.222 2.18 0.00 0.00 3.07
5345 13498 4.899239 GTCGGATGCAGAGGCCGG 62.899 72.222 16.62 0.00 44.87 6.13
5346 13499 4.147449 TGTCGGATGCAGAGGCCG 62.147 66.667 12.24 12.24 46.08 6.13
5348 13501 0.879400 CATCTGTCGGATGCAGAGGC 60.879 60.000 8.73 0.00 44.86 4.70
5357 13510 0.956633 GGCCGTATACATCTGTCGGA 59.043 55.000 11.74 0.00 43.22 4.55
5358 13511 0.671796 TGGCCGTATACATCTGTCGG 59.328 55.000 3.32 4.97 43.37 4.79
5359 13512 2.724977 ATGGCCGTATACATCTGTCG 57.275 50.000 0.00 0.00 0.00 4.35
5360 13513 3.257375 TGGTATGGCCGTATACATCTGTC 59.743 47.826 8.21 0.00 41.21 3.51
5361 13514 3.236047 TGGTATGGCCGTATACATCTGT 58.764 45.455 8.21 0.00 41.21 3.41
5364 13517 4.802039 CGTAATGGTATGGCCGTATACATC 59.198 45.833 19.49 11.04 41.21 3.06
5367 13520 4.178545 ACGTAATGGTATGGCCGTATAC 57.821 45.455 8.21 6.31 41.21 1.47
5368 13521 4.870123 AACGTAATGGTATGGCCGTATA 57.130 40.909 8.21 0.97 41.21 1.47
5370 13523 3.196463 CAAACGTAATGGTATGGCCGTA 58.804 45.455 0.00 0.00 41.21 4.02
5371 13524 2.011222 CAAACGTAATGGTATGGCCGT 58.989 47.619 1.35 1.35 41.21 5.68
5373 13526 5.761165 ATAACAAACGTAATGGTATGGCC 57.239 39.130 10.16 0.00 29.69 5.36
5374 13527 6.787225 TCAATAACAAACGTAATGGTATGGC 58.213 36.000 11.35 0.00 31.24 4.40
5376 13529 9.272901 CACTTCAATAACAAACGTAATGGTATG 57.727 33.333 11.35 7.22 31.24 2.39
5377 13530 9.221933 TCACTTCAATAACAAACGTAATGGTAT 57.778 29.630 6.11 6.11 32.12 2.73
5388 13782 9.567848 GAGAGTTGTTTTCACTTCAATAACAAA 57.432 29.630 0.00 0.00 39.53 2.83
5391 13785 9.010366 GTTGAGAGTTGTTTTCACTTCAATAAC 57.990 33.333 0.00 0.00 0.00 1.89
5397 13791 6.411652 CGTAGTTGAGAGTTGTTTTCACTTC 58.588 40.000 0.00 0.00 0.00 3.01
5407 13801 3.172050 CGACATCCGTAGTTGAGAGTTG 58.828 50.000 0.00 0.00 0.00 3.16
5408 13802 2.415625 GCGACATCCGTAGTTGAGAGTT 60.416 50.000 0.00 0.00 41.15 3.01
5412 13806 2.355132 ACTAGCGACATCCGTAGTTGAG 59.645 50.000 0.00 0.00 41.15 3.02
5428 13822 7.776933 TCTCATTTGTGATCATGTTACTAGC 57.223 36.000 0.00 0.00 0.00 3.42
5435 13829 7.066645 CACCACTAATCTCATTTGTGATCATGT 59.933 37.037 0.00 0.34 44.87 3.21
5443 13837 4.216257 GCACACACCACTAATCTCATTTGT 59.784 41.667 0.00 0.00 0.00 2.83
5457 13851 1.759459 TATGGTCACCGCACACACCA 61.759 55.000 0.00 0.00 43.10 4.17
5460 13854 1.472552 GCTATATGGTCACCGCACACA 60.473 52.381 0.00 0.00 0.00 3.72
5462 13856 0.827368 TGCTATATGGTCACCGCACA 59.173 50.000 0.00 0.00 0.00 4.57
5463 13857 1.948104 TTGCTATATGGTCACCGCAC 58.052 50.000 0.00 0.00 0.00 5.34
5464 13858 2.560504 CTTTGCTATATGGTCACCGCA 58.439 47.619 0.00 0.00 0.00 5.69
5465 13859 1.873591 CCTTTGCTATATGGTCACCGC 59.126 52.381 0.00 0.00 0.00 5.68
5466 13860 3.131396 GACCTTTGCTATATGGTCACCG 58.869 50.000 6.18 0.00 45.87 4.94
5467 13861 3.131396 CGACCTTTGCTATATGGTCACC 58.869 50.000 10.92 0.00 46.65 4.02
5468 13862 3.793559 ACGACCTTTGCTATATGGTCAC 58.206 45.455 10.92 0.00 46.65 3.67
5469 13863 4.481368 AACGACCTTTGCTATATGGTCA 57.519 40.909 10.92 0.00 46.65 4.02
5470 13864 7.115947 GTGTATAACGACCTTTGCTATATGGTC 59.884 40.741 0.00 0.00 43.86 4.02
5471 13865 6.927381 GTGTATAACGACCTTTGCTATATGGT 59.073 38.462 0.00 0.00 35.23 3.55
5472 13866 6.367969 GGTGTATAACGACCTTTGCTATATGG 59.632 42.308 0.00 0.00 0.00 2.74
5473 13867 6.367969 GGGTGTATAACGACCTTTGCTATATG 59.632 42.308 0.00 0.00 32.33 1.78
5474 13868 6.042322 TGGGTGTATAACGACCTTTGCTATAT 59.958 38.462 0.00 0.00 32.33 0.86
5511 14131 2.223876 GCTTGCCCATATCACATTGTGG 60.224 50.000 16.46 0.74 33.87 4.17
5512 14132 2.223876 GGCTTGCCCATATCACATTGTG 60.224 50.000 10.64 10.64 34.45 3.33
5515 14135 2.176364 AGAGGCTTGCCCATATCACATT 59.824 45.455 8.17 0.00 35.39 2.71
5761 14381 2.289820 GTGTTTCCCCTCGTGTTTTCTC 59.710 50.000 0.00 0.00 0.00 2.87
5762 14382 2.092592 AGTGTTTCCCCTCGTGTTTTCT 60.093 45.455 0.00 0.00 0.00 2.52
5763 14383 2.289820 GAGTGTTTCCCCTCGTGTTTTC 59.710 50.000 0.00 0.00 0.00 2.29
5764 14384 2.294979 GAGTGTTTCCCCTCGTGTTTT 58.705 47.619 0.00 0.00 0.00 2.43
5771 14391 3.888930 TGTTGATTTGAGTGTTTCCCCTC 59.111 43.478 0.00 0.00 0.00 4.30
5780 14400 6.025896 GCATCTATGTGTGTTGATTTGAGTG 58.974 40.000 0.00 0.00 0.00 3.51
5788 14408 7.920160 TCTTTATTGCATCTATGTGTGTTGA 57.080 32.000 0.00 0.00 0.00 3.18
5825 14446 8.313944 TCTTTGGATGATTTGGATCAATGATT 57.686 30.769 0.00 0.00 44.96 2.57
5826 14447 7.783119 TCTCTTTGGATGATTTGGATCAATGAT 59.217 33.333 0.00 0.00 44.96 2.45
5828 14449 7.284716 TCTCTCTTTGGATGATTTGGATCAATG 59.715 37.037 0.00 0.00 44.96 2.82
5844 14465 6.054295 CCTATCTTGTTCCATCTCTCTTTGG 58.946 44.000 0.00 0.00 0.00 3.28
5902 14523 3.609853 ACGAAAGGCATCATAGAAGCAA 58.390 40.909 0.00 0.00 0.00 3.91
5922 14543 2.996621 CAAGACCTCCAATCGTGAAGAC 59.003 50.000 0.00 0.00 0.00 3.01
5926 14547 5.453339 GGAATATCAAGACCTCCAATCGTGA 60.453 44.000 0.00 0.00 38.63 4.35
5932 14553 5.104360 CCTTCAGGAATATCAAGACCTCCAA 60.104 44.000 0.00 0.00 37.39 3.53
5952 14573 3.262151 GCCCCATAGGAGTAGATTCCTTC 59.738 52.174 0.00 0.00 45.35 3.46
5961 14582 3.571755 GGAAGGCCCCATAGGAGTA 57.428 57.895 0.00 0.00 38.24 2.59
5972 14593 1.616628 TCCTCTTGAGGGGAAGGCC 60.617 63.158 15.81 0.00 0.00 5.19
5984 14605 3.525862 AGTGGAATCAAGACCTCCTCTT 58.474 45.455 0.00 0.00 40.13 2.85
5985 14606 3.197927 AGTGGAATCAAGACCTCCTCT 57.802 47.619 0.00 1.82 0.00 3.69
5986 14607 3.386402 CCTAGTGGAATCAAGACCTCCTC 59.614 52.174 0.00 0.00 34.57 3.71
6005 14626 2.561209 TGTGGGATCTACCTTGCCTA 57.439 50.000 0.00 0.00 38.98 3.93
6020 14641 4.785301 ACTCATGTATCTCCCATTTGTGG 58.215 43.478 0.00 0.00 0.00 4.17
6021 14642 7.467811 GCTTTACTCATGTATCTCCCATTTGTG 60.468 40.741 0.00 0.00 0.00 3.33
6046 14667 8.549338 AACACTAGAACTAAAAACCATAGAGC 57.451 34.615 0.00 0.00 0.00 4.09
6049 14670 8.784043 AGCAAACACTAGAACTAAAAACCATAG 58.216 33.333 0.00 0.00 0.00 2.23
6055 14676 7.933396 GGGTTAGCAAACACTAGAACTAAAAA 58.067 34.615 0.00 0.00 36.01 1.94
6087 14708 0.552615 AAATACCTGCCCCCACCTCT 60.553 55.000 0.00 0.00 0.00 3.69
6096 14717 6.391537 GTGAGCTAGACTATAAATACCTGCC 58.608 44.000 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.