Multiple sequence alignment - TraesCS1B01G168000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G168000 chr1B 100.000 4447 0 0 4056 8502 297297424 297301870 0.000000e+00 8213.0
1 TraesCS1B01G168000 chr1B 100.000 3531 0 0 1 3531 297293369 297296899 0.000000e+00 6521.0
2 TraesCS1B01G168000 chr1B 95.362 884 38 3 4067 4947 59836644 59837527 0.000000e+00 1402.0
3 TraesCS1B01G168000 chr1B 91.572 878 46 5 7650 8502 38271135 38270261 0.000000e+00 1186.0
4 TraesCS1B01G168000 chr1B 96.416 279 10 0 129 407 37568564 37568286 2.160000e-125 460.0
5 TraesCS1B01G168000 chr1B 95.789 285 12 0 123 407 660398561 660398845 2.160000e-125 460.0
6 TraesCS1B01G168000 chr1B 89.767 215 20 1 3319 3531 59836394 59836608 3.020000e-69 274.0
7 TraesCS1B01G168000 chr1B 92.754 138 10 0 5217 5354 138773797 138773660 5.200000e-47 200.0
8 TraesCS1B01G168000 chr1B 91.803 122 9 1 5591 5712 292206389 292206269 1.470000e-37 169.0
9 TraesCS1B01G168000 chr1A 96.785 1804 47 6 5800 7600 257967420 257969215 0.000000e+00 3000.0
10 TraesCS1B01G168000 chr1A 90.870 931 27 20 852 1731 257959788 257960711 0.000000e+00 1195.0
11 TraesCS1B01G168000 chr1A 90.730 356 32 1 2443 2798 257965750 257966104 2.780000e-129 473.0
12 TraesCS1B01G168000 chr1A 88.427 337 18 6 405 724 257959325 257959657 3.720000e-103 387.0
13 TraesCS1B01G168000 chr1A 92.029 276 18 3 4942 5216 257966782 257967054 1.340000e-102 385.0
14 TraesCS1B01G168000 chr1A 87.795 254 29 2 5339 5592 257967052 257967303 6.450000e-76 296.0
15 TraesCS1B01G168000 chr1A 86.250 240 16 9 3003 3241 257966572 257966795 2.370000e-60 244.0
16 TraesCS1B01G168000 chr1A 86.425 221 19 3 1727 1937 257964515 257964734 1.850000e-56 231.0
17 TraesCS1B01G168000 chr1A 95.327 107 5 0 1731 1837 257965213 257965319 4.080000e-38 171.0
18 TraesCS1B01G168000 chr1A 88.889 126 8 3 2321 2443 257965591 257965713 5.320000e-32 150.0
19 TraesCS1B01G168000 chr1A 91.489 94 7 1 2875 2967 257966140 257966233 2.490000e-25 128.0
20 TraesCS1B01G168000 chr1A 91.837 49 3 1 2071 2118 579321967 579321919 5.510000e-07 67.6
21 TraesCS1B01G168000 chr1D 96.280 1801 61 2 5800 7600 203430719 203432513 0.000000e+00 2950.0
22 TraesCS1B01G168000 chr1D 89.574 1621 74 33 405 1948 203427288 203428890 0.000000e+00 1969.0
23 TraesCS1B01G168000 chr1D 91.656 815 52 7 2443 3241 203429269 203430083 0.000000e+00 1114.0
24 TraesCS1B01G168000 chr1D 93.116 276 16 2 4942 5216 203430070 203430343 1.330000e-107 401.0
25 TraesCS1B01G168000 chr1D 89.370 254 26 1 5339 5592 203430341 203430593 1.380000e-82 318.0
26 TraesCS1B01G168000 chr1D 91.538 130 5 3 2318 2443 203429104 203429231 3.150000e-39 174.0
27 TraesCS1B01G168000 chr1D 87.879 66 6 2 2071 2134 490133015 490132950 9.150000e-10 76.8
28 TraesCS1B01G168000 chr5B 97.377 877 20 3 4067 4942 618139126 618140000 0.000000e+00 1489.0
29 TraesCS1B01G168000 chr5B 95.632 847 34 3 7656 8502 375421236 375420393 0.000000e+00 1356.0
30 TraesCS1B01G168000 chr5B 93.310 852 54 3 7651 8502 639760689 639759841 0.000000e+00 1254.0
31 TraesCS1B01G168000 chr5B 95.088 285 14 0 123 407 487639393 487639109 4.680000e-122 449.0
32 TraesCS1B01G168000 chr5B 89.677 155 14 2 5201 5354 408718875 408718722 6.730000e-46 196.0
33 TraesCS1B01G168000 chr5B 91.608 143 10 2 5201 5342 440648877 440649018 6.730000e-46 196.0
34 TraesCS1B01G168000 chr5B 89.706 136 11 3 5584 5718 469125865 469125998 4.080000e-38 171.0
35 TraesCS1B01G168000 chr5B 91.129 124 11 0 5591 5714 562793820 562793697 1.470000e-37 169.0
36 TraesCS1B01G168000 chr5B 84.211 114 15 2 5380 5491 528369868 528369980 3.250000e-19 108.0
37 TraesCS1B01G168000 chr2B 96.818 880 26 2 4064 4942 29532113 29531235 0.000000e+00 1469.0
38 TraesCS1B01G168000 chr2B 96.057 279 11 0 129 407 198448733 198449011 1.010000e-123 455.0
39 TraesCS1B01G168000 chr2B 91.608 143 10 2 5201 5342 244099195 244099336 6.730000e-46 196.0
40 TraesCS1B01G168000 chr4A 95.682 880 38 0 4065 4944 733779039 733779918 0.000000e+00 1415.0
41 TraesCS1B01G168000 chr4A 95.439 285 12 1 129 413 738612156 738612439 3.620000e-123 453.0
42 TraesCS1B01G168000 chr4A 92.562 121 9 0 5587 5707 286746917 286746797 3.150000e-39 174.0
43 TraesCS1B01G168000 chr4A 81.203 133 18 5 5380 5512 497020492 497020367 5.430000e-17 100.0
44 TraesCS1B01G168000 chr4A 93.023 43 2 1 2085 2126 34673996 34674038 2.560000e-05 62.1
45 TraesCS1B01G168000 chr3B 96.083 868 30 2 4076 4943 586726924 586727787 0.000000e+00 1411.0
46 TraesCS1B01G168000 chr3B 97.105 829 21 2 4119 4944 725179387 725180215 0.000000e+00 1395.0
47 TraesCS1B01G168000 chr3B 93.220 118 8 0 5590 5707 457968799 457968682 3.150000e-39 174.0
48 TraesCS1B01G168000 chr3B 93.220 118 8 0 5590 5707 805003333 805003450 3.150000e-39 174.0
49 TraesCS1B01G168000 chr3B 80.769 104 19 1 3066 3168 713878661 713878764 7.070000e-11 80.5
50 TraesCS1B01G168000 chr4B 94.965 854 37 6 7650 8502 609321802 609320954 0.000000e+00 1334.0
51 TraesCS1B01G168000 chr4B 79.262 1355 223 44 6044 7372 631572221 631570899 0.000000e+00 893.0
52 TraesCS1B01G168000 chr4B 95.439 285 13 0 123 407 453049522 453049238 1.010000e-123 455.0
53 TraesCS1B01G168000 chr4B 96.057 279 11 0 129 407 595706116 595705838 1.010000e-123 455.0
54 TraesCS1B01G168000 chr4B 94.276 297 14 2 124 418 483526494 483526199 1.300000e-122 451.0
55 TraesCS1B01G168000 chr4B 95.088 285 14 0 127 411 590862207 590861923 4.680000e-122 449.0
56 TraesCS1B01G168000 chr4B 88.341 223 26 0 1340 1562 631575125 631574903 1.410000e-67 268.0
57 TraesCS1B01G168000 chr4B 92.000 125 9 1 5591 5714 612251209 612251085 3.150000e-39 174.0
58 TraesCS1B01G168000 chr4B 93.162 117 8 0 5591 5707 144758157 144758041 1.130000e-38 172.0
59 TraesCS1B01G168000 chr7A 93.378 891 56 3 4056 4944 701034625 701035514 0.000000e+00 1315.0
60 TraesCS1B01G168000 chr6B 93.213 884 55 5 4065 4945 707905464 707906345 0.000000e+00 1295.0
61 TraesCS1B01G168000 chr6B 89.659 880 55 16 7650 8502 715208810 715207940 0.000000e+00 1088.0
62 TraesCS1B01G168000 chr6B 73.713 1438 312 46 6044 7454 36809461 36808063 1.270000e-137 501.0
63 TraesCS1B01G168000 chr6B 78.935 413 67 16 1156 1562 36811310 36810912 6.540000e-66 263.0
64 TraesCS1B01G168000 chr6B 94.815 135 7 0 5209 5343 160666149 160666283 2.400000e-50 211.0
65 TraesCS1B01G168000 chr6B 92.361 144 8 3 5201 5342 112462503 112462645 1.450000e-47 202.0
66 TraesCS1B01G168000 chr6B 92.199 141 11 0 5214 5354 244146379 244146239 5.200000e-47 200.0
67 TraesCS1B01G168000 chr6B 90.604 149 12 2 5201 5348 128506236 128506089 6.730000e-46 196.0
68 TraesCS1B01G168000 chr6B 100.000 29 0 0 3008 3036 686510713 686510741 4.000000e-03 54.7
69 TraesCS1B01G168000 chr7B 92.937 892 54 8 4056 4941 617551632 617550744 0.000000e+00 1290.0
70 TraesCS1B01G168000 chr7B 90.604 149 12 2 5201 5348 157542362 157542215 6.730000e-46 196.0
71 TraesCS1B01G168000 chr7B 93.478 46 3 0 2071 2116 503503472 503503517 1.530000e-07 69.4
72 TraesCS1B01G168000 chr7B 95.000 40 1 1 3006 3044 155471319 155471280 2.560000e-05 62.1
73 TraesCS1B01G168000 chr3D 90.899 879 49 7 7650 8502 377906923 377907796 0.000000e+00 1151.0
74 TraesCS1B01G168000 chr3D 82.109 313 48 7 6135 6443 177348175 177347867 2.350000e-65 261.0
75 TraesCS1B01G168000 chr3D 83.007 153 24 2 3006 3158 425983546 425983696 4.140000e-28 137.0
76 TraesCS1B01G168000 chr3D 76.623 154 23 10 3009 3155 615121354 615121501 1.180000e-08 73.1
77 TraesCS1B01G168000 chr3D 90.566 53 5 0 1486 1538 40754369 40754317 4.260000e-08 71.3
78 TraesCS1B01G168000 chr6D 90.330 879 54 7 7650 8502 1554112 1554985 0.000000e+00 1123.0
79 TraesCS1B01G168000 chr6D 78.374 578 117 8 6046 6619 22174124 22173551 1.350000e-97 368.0
80 TraesCS1B01G168000 chr6D 78.537 410 69 11 1156 1562 22175293 22174900 1.420000e-62 252.0
81 TraesCS1B01G168000 chr6D 91.406 128 11 0 1946 2073 126108389 126108262 8.770000e-40 176.0
82 TraesCS1B01G168000 chr6D 91.406 128 11 0 1946 2073 408047489 408047616 8.770000e-40 176.0
83 TraesCS1B01G168000 chr6D 82.099 162 29 0 5373 5534 304768867 304769028 1.150000e-28 139.0
84 TraesCS1B01G168000 chr6D 91.304 46 3 1 2084 2128 93604 93559 2.560000e-05 62.1
85 TraesCS1B01G168000 chr5D 89.989 879 59 7 7650 8502 37155583 37156458 0.000000e+00 1109.0
86 TraesCS1B01G168000 chr5D 88.610 878 58 27 7650 8502 344463911 344463051 0.000000e+00 1029.0
87 TraesCS1B01G168000 chr5D 91.111 135 12 0 1942 2076 354741254 354741120 5.240000e-42 183.0
88 TraesCS1B01G168000 chr5D 92.188 128 10 0 1946 2073 14868763 14868636 1.890000e-41 182.0
89 TraesCS1B01G168000 chr5D 92.188 128 10 0 1946 2073 364050414 364050541 1.890000e-41 182.0
90 TraesCS1B01G168000 chr5D 91.935 124 9 1 5591 5713 486173644 486173521 1.130000e-38 172.0
91 TraesCS1B01G168000 chr5D 88.679 53 5 1 2272 2324 551739889 551739940 7.120000e-06 63.9
92 TraesCS1B01G168000 chr2A 90.046 874 61 10 7650 8502 669843830 669842962 0.000000e+00 1109.0
93 TraesCS1B01G168000 chr2A 95.455 44 2 0 2071 2114 75305879 75305836 4.260000e-08 71.3
94 TraesCS1B01G168000 chr2A 92.000 50 2 2 2998 3045 537461155 537461106 1.530000e-07 69.4
95 TraesCS1B01G168000 chr2A 100.000 29 0 0 5773 5801 688549990 688549962 4.000000e-03 54.7
96 TraesCS1B01G168000 chr5A 79.377 1348 231 32 6044 7372 672837461 672836142 0.000000e+00 905.0
97 TraesCS1B01G168000 chr5A 89.686 223 23 0 1340 1562 672841298 672841076 1.400000e-72 285.0
98 TraesCS1B01G168000 chr5A 78.289 152 24 5 3007 3158 183434864 183435006 1.180000e-13 89.8
99 TraesCS1B01G168000 chr5A 85.526 76 10 1 3084 3158 7720001 7719926 2.540000e-10 78.7
100 TraesCS1B01G168000 chr5A 91.667 48 3 1 2079 2125 605797979 605798026 1.980000e-06 65.8
101 TraesCS1B01G168000 chr5A 90.000 50 3 1 2079 2128 83288561 83288514 7.120000e-06 63.9
102 TraesCS1B01G168000 chr4D 78.830 1351 236 36 6044 7372 493329843 493328521 0.000000e+00 865.0
103 TraesCS1B01G168000 chr4D 89.238 223 24 0 1340 1562 493336872 493336650 6.500000e-71 279.0
104 TraesCS1B01G168000 chr4D 93.182 44 3 0 2071 2114 40952182 40952139 1.980000e-06 65.8
105 TraesCS1B01G168000 chr4D 100.000 29 0 0 5773 5801 491948624 491948596 4.000000e-03 54.7
106 TraesCS1B01G168000 chr6A 75.148 1348 279 38 6044 7369 21636461 21635148 4.420000e-162 582.0
107 TraesCS1B01G168000 chr6A 79.512 410 65 11 1156 1562 21637459 21637066 3.020000e-69 274.0
108 TraesCS1B01G168000 chr6A 91.667 60 5 0 5376 5435 410576092 410576033 5.470000e-12 84.2
109 TraesCS1B01G168000 chrUn 92.188 128 10 0 1946 2073 98153915 98153788 1.890000e-41 182.0
110 TraesCS1B01G168000 chrUn 85.714 70 10 0 3084 3153 144878633 144878564 3.290000e-09 75.0
111 TraesCS1B01G168000 chrUn 85.714 70 10 0 3084 3153 144917222 144917153 3.290000e-09 75.0
112 TraesCS1B01G168000 chrUn 85.714 70 10 0 3084 3153 179841888 179841819 3.290000e-09 75.0
113 TraesCS1B01G168000 chrUn 85.714 70 10 0 3084 3153 179880059 179879990 3.290000e-09 75.0
114 TraesCS1B01G168000 chrUn 85.714 70 10 0 3084 3153 246179657 246179588 3.290000e-09 75.0
115 TraesCS1B01G168000 chrUn 85.714 70 10 0 3084 3153 272673732 272673663 3.290000e-09 75.0
116 TraesCS1B01G168000 chrUn 85.714 70 10 0 3084 3153 400259851 400259782 3.290000e-09 75.0
117 TraesCS1B01G168000 chrUn 92.157 51 4 0 3103 3153 446035574 446035624 1.180000e-08 73.1
118 TraesCS1B01G168000 chr7D 92.188 128 10 0 1946 2073 205474850 205474723 1.890000e-41 182.0
119 TraesCS1B01G168000 chr7D 83.007 153 26 0 3006 3158 575593984 575594136 1.150000e-28 139.0
120 TraesCS1B01G168000 chr7D 78.378 148 29 2 3012 3158 10723600 10723455 9.090000e-15 93.5
121 TraesCS1B01G168000 chr7D 89.796 49 5 0 2079 2127 495823381 495823429 7.120000e-06 63.9
122 TraesCS1B01G168000 chr2D 91.538 130 11 0 1946 2075 242564004 242564133 6.780000e-41 180.0
123 TraesCS1B01G168000 chr2D 92.126 127 10 0 1947 2073 605712386 605712260 6.780000e-41 180.0
124 TraesCS1B01G168000 chr2D 78.261 161 29 5 3006 3164 444766117 444766273 1.950000e-16 99.0
125 TraesCS1B01G168000 chr2D 86.957 69 7 2 2273 2341 642240155 642240221 9.150000e-10 76.8
126 TraesCS1B01G168000 chr2D 93.182 44 3 0 2071 2114 97871072 97871029 1.980000e-06 65.8
127 TraesCS1B01G168000 chr2D 100.000 31 0 0 5505 5535 459105984 459106014 3.310000e-04 58.4
128 TraesCS1B01G168000 chr3A 80.132 151 28 2 5382 5532 637465284 637465432 2.510000e-20 111.0
129 TraesCS1B01G168000 chr3A 78.947 95 20 0 7095 7189 640679416 640679322 1.980000e-06 65.8
130 TraesCS1B01G168000 chr3A 78.947 95 20 0 7095 7189 640699298 640699204 1.980000e-06 65.8
131 TraesCS1B01G168000 chr3A 78.947 95 20 0 7095 7189 640749353 640749259 1.980000e-06 65.8
132 TraesCS1B01G168000 chr3A 100.000 28 0 0 3004 3031 111556189 111556162 1.500000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G168000 chr1B 297293369 297301870 8501 False 7367.000000 8213 100.000000 1 8502 2 chr1B.!!$F3 8501
1 TraesCS1B01G168000 chr1B 38270261 38271135 874 True 1186.000000 1186 91.572000 7650 8502 1 chr1B.!!$R2 852
2 TraesCS1B01G168000 chr1B 59836394 59837527 1133 False 838.000000 1402 92.564500 3319 4947 2 chr1B.!!$F2 1628
3 TraesCS1B01G168000 chr1A 257959325 257969215 9890 False 605.454545 3000 90.456000 405 7600 11 chr1A.!!$F1 7195
4 TraesCS1B01G168000 chr1D 203427288 203432513 5225 False 1154.333333 2950 91.922333 405 7600 6 chr1D.!!$F1 7195
5 TraesCS1B01G168000 chr5B 618139126 618140000 874 False 1489.000000 1489 97.377000 4067 4942 1 chr5B.!!$F4 875
6 TraesCS1B01G168000 chr5B 375420393 375421236 843 True 1356.000000 1356 95.632000 7656 8502 1 chr5B.!!$R1 846
7 TraesCS1B01G168000 chr5B 639759841 639760689 848 True 1254.000000 1254 93.310000 7651 8502 1 chr5B.!!$R5 851
8 TraesCS1B01G168000 chr2B 29531235 29532113 878 True 1469.000000 1469 96.818000 4064 4942 1 chr2B.!!$R1 878
9 TraesCS1B01G168000 chr4A 733779039 733779918 879 False 1415.000000 1415 95.682000 4065 4944 1 chr4A.!!$F2 879
10 TraesCS1B01G168000 chr3B 586726924 586727787 863 False 1411.000000 1411 96.083000 4076 4943 1 chr3B.!!$F1 867
11 TraesCS1B01G168000 chr3B 725179387 725180215 828 False 1395.000000 1395 97.105000 4119 4944 1 chr3B.!!$F3 825
12 TraesCS1B01G168000 chr4B 609320954 609321802 848 True 1334.000000 1334 94.965000 7650 8502 1 chr4B.!!$R6 852
13 TraesCS1B01G168000 chr4B 631570899 631575125 4226 True 580.500000 893 83.801500 1340 7372 2 chr4B.!!$R8 6032
14 TraesCS1B01G168000 chr7A 701034625 701035514 889 False 1315.000000 1315 93.378000 4056 4944 1 chr7A.!!$F1 888
15 TraesCS1B01G168000 chr6B 707905464 707906345 881 False 1295.000000 1295 93.213000 4065 4945 1 chr6B.!!$F4 880
16 TraesCS1B01G168000 chr6B 715207940 715208810 870 True 1088.000000 1088 89.659000 7650 8502 1 chr6B.!!$R3 852
17 TraesCS1B01G168000 chr6B 36808063 36811310 3247 True 382.000000 501 76.324000 1156 7454 2 chr6B.!!$R4 6298
18 TraesCS1B01G168000 chr7B 617550744 617551632 888 True 1290.000000 1290 92.937000 4056 4941 1 chr7B.!!$R3 885
19 TraesCS1B01G168000 chr3D 377906923 377907796 873 False 1151.000000 1151 90.899000 7650 8502 1 chr3D.!!$F1 852
20 TraesCS1B01G168000 chr6D 1554112 1554985 873 False 1123.000000 1123 90.330000 7650 8502 1 chr6D.!!$F1 852
21 TraesCS1B01G168000 chr6D 22173551 22175293 1742 True 310.000000 368 78.455500 1156 6619 2 chr6D.!!$R3 5463
22 TraesCS1B01G168000 chr5D 37155583 37156458 875 False 1109.000000 1109 89.989000 7650 8502 1 chr5D.!!$F1 852
23 TraesCS1B01G168000 chr5D 344463051 344463911 860 True 1029.000000 1029 88.610000 7650 8502 1 chr5D.!!$R2 852
24 TraesCS1B01G168000 chr2A 669842962 669843830 868 True 1109.000000 1109 90.046000 7650 8502 1 chr2A.!!$R3 852
25 TraesCS1B01G168000 chr5A 672836142 672841298 5156 True 595.000000 905 84.531500 1340 7372 2 chr5A.!!$R3 6032
26 TraesCS1B01G168000 chr4D 493328521 493329843 1322 True 865.000000 865 78.830000 6044 7372 1 chr4D.!!$R3 1328
27 TraesCS1B01G168000 chr6A 21635148 21637459 2311 True 428.000000 582 77.330000 1156 7369 2 chr6A.!!$R2 6213

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
865 932 0.323178 CACTCTTCAGCCAGGGCATT 60.323 55.000 13.63 0.0 44.88 3.56 F
1351 1473 0.104120 TGTGTGCAGTGTACGAGCTT 59.896 50.000 6.88 0.0 0.00 3.74 F
2349 7962 0.328258 CATTTTGGGACCGGGAGAGT 59.672 55.000 6.32 0.0 0.00 3.24 F
2350 7963 1.557832 CATTTTGGGACCGGGAGAGTA 59.442 52.381 6.32 0.0 0.00 2.59 F
3246 9345 2.981805 TGAAACTATTCGACGTGGTTCG 59.018 45.455 0.00 0.0 40.89 3.95 F
3261 9360 0.041576 GTTCGTTCTTCAACACCGGC 60.042 55.000 0.00 0.0 32.14 6.13 F
5076 11187 0.107831 GGCCGTATCCACATTAGGCA 59.892 55.000 6.61 0.0 45.79 4.75 F
5230 11341 0.043637 AATACTCCCTCCGTCCCCAA 59.956 55.000 0.00 0.0 0.00 4.12 F
5234 11345 0.107165 CTCCCTCCGTCCCCAAATTC 60.107 60.000 0.00 0.0 0.00 2.17 F
5236 11347 0.331616 CCCTCCGTCCCCAAATTCTT 59.668 55.000 0.00 0.0 0.00 2.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2599 8256 0.035458 GACAGTCAGTCACCCCCAAG 59.965 60.000 0.00 0.00 46.77 3.61 R
3242 9341 0.041576 GCCGGTGTTGAAGAACGAAC 60.042 55.000 0.00 0.00 34.49 3.95 R
3249 9348 0.108329 AGATACCGCCGGTGTTGAAG 60.108 55.000 21.20 0.00 36.19 3.02 R
3250 9349 0.108520 GAGATACCGCCGGTGTTGAA 60.109 55.000 21.20 0.00 36.19 2.69 R
5211 11322 0.043637 TTGGGGACGGAGGGAGTATT 59.956 55.000 0.00 0.00 0.00 1.89 R
5215 11326 0.107165 GAATTTGGGGACGGAGGGAG 60.107 60.000 0.00 0.00 0.00 4.30 R
6631 15619 3.653078 TTGGCGTCCCCGGGATTT 61.653 61.111 26.32 0.00 32.73 2.17 R
7240 16237 4.017877 GCGCTGCTGAGCACGTTT 62.018 61.111 22.91 0.00 46.62 3.60 R
7468 16468 1.134280 GCTGGCTCTGAATGAAGCCTA 60.134 52.381 13.99 1.17 46.77 3.93 R
7600 16600 5.657470 TTCAGTAATGAGTATTGCATCGC 57.343 39.130 0.00 0.00 32.09 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.058206 CGCGCGCGCTGCATTATA 62.058 61.111 45.97 0.00 46.97 0.98
24 25 2.202096 GCGCGCGCTGCATTATAG 60.202 61.111 44.38 15.91 46.97 1.31
25 26 2.202096 CGCGCGCTGCATTATAGC 60.202 61.111 30.48 6.56 46.97 2.97
30 31 2.174349 GCTGCATTATAGCGCCGC 59.826 61.111 2.29 0.00 37.31 6.53
31 32 2.320587 GCTGCATTATAGCGCCGCT 61.321 57.895 18.67 18.67 43.41 5.52
32 33 1.494628 CTGCATTATAGCGCCGCTG 59.505 57.895 23.97 6.36 40.10 5.18
33 34 2.174349 GCATTATAGCGCCGCTGC 59.826 61.111 23.97 13.60 40.10 5.25
35 36 1.494628 CATTATAGCGCCGCTGCTG 59.505 57.895 23.97 9.60 46.70 4.41
36 37 1.669115 ATTATAGCGCCGCTGCTGG 60.669 57.895 23.97 1.93 46.70 4.85
37 38 2.099652 ATTATAGCGCCGCTGCTGGA 62.100 55.000 23.97 0.12 46.70 3.86
38 39 2.699576 TTATAGCGCCGCTGCTGGAG 62.700 60.000 23.97 11.19 46.70 3.86
88 89 2.800746 GCGCGCGCAAACAGATTT 60.801 55.556 46.11 0.00 41.49 2.17
89 90 2.364311 GCGCGCGCAAACAGATTTT 61.364 52.632 46.11 0.00 41.49 1.82
90 91 1.875419 GCGCGCGCAAACAGATTTTT 61.875 50.000 46.11 0.00 41.49 1.94
118 119 4.670606 GCTTTATCGCGGCTGTTG 57.329 55.556 6.13 0.00 0.00 3.33
119 120 2.086510 GCTTTATCGCGGCTGTTGA 58.913 52.632 6.13 0.00 0.00 3.18
120 121 0.446222 GCTTTATCGCGGCTGTTGAA 59.554 50.000 6.13 0.00 0.00 2.69
121 122 1.529826 GCTTTATCGCGGCTGTTGAAG 60.530 52.381 6.13 2.81 0.00 3.02
122 123 1.999735 CTTTATCGCGGCTGTTGAAGA 59.000 47.619 6.13 0.00 0.00 2.87
123 124 2.309528 TTATCGCGGCTGTTGAAGAT 57.690 45.000 6.13 0.00 0.00 2.40
124 125 1.570813 TATCGCGGCTGTTGAAGATG 58.429 50.000 6.13 0.00 0.00 2.90
125 126 1.709147 ATCGCGGCTGTTGAAGATGC 61.709 55.000 6.13 0.00 0.00 3.91
126 127 2.393768 CGCGGCTGTTGAAGATGCT 61.394 57.895 0.00 0.00 0.00 3.79
127 128 1.427020 GCGGCTGTTGAAGATGCTC 59.573 57.895 0.00 0.00 0.00 4.26
128 129 1.023513 GCGGCTGTTGAAGATGCTCT 61.024 55.000 0.00 0.00 0.00 4.09
129 130 1.446907 CGGCTGTTGAAGATGCTCTT 58.553 50.000 0.00 0.00 39.87 2.85
130 131 2.621338 CGGCTGTTGAAGATGCTCTTA 58.379 47.619 0.00 0.00 36.73 2.10
131 132 2.606725 CGGCTGTTGAAGATGCTCTTAG 59.393 50.000 0.00 0.00 36.73 2.18
132 133 2.941720 GGCTGTTGAAGATGCTCTTAGG 59.058 50.000 0.00 0.00 36.73 2.69
133 134 2.354199 GCTGTTGAAGATGCTCTTAGGC 59.646 50.000 0.00 0.00 36.73 3.93
134 135 3.871485 CTGTTGAAGATGCTCTTAGGCT 58.129 45.455 0.00 0.00 36.73 4.58
135 136 3.603532 TGTTGAAGATGCTCTTAGGCTG 58.396 45.455 0.00 0.00 36.73 4.85
136 137 2.941720 GTTGAAGATGCTCTTAGGCTGG 59.058 50.000 0.00 0.00 36.73 4.85
137 138 2.191400 TGAAGATGCTCTTAGGCTGGT 58.809 47.619 0.00 0.00 36.73 4.00
138 139 2.573462 TGAAGATGCTCTTAGGCTGGTT 59.427 45.455 0.00 0.00 36.73 3.67
139 140 2.706339 AGATGCTCTTAGGCTGGTTG 57.294 50.000 0.00 0.00 0.00 3.77
140 141 1.912043 AGATGCTCTTAGGCTGGTTGT 59.088 47.619 0.00 0.00 0.00 3.32
141 142 3.107601 AGATGCTCTTAGGCTGGTTGTA 58.892 45.455 0.00 0.00 0.00 2.41
142 143 3.519510 AGATGCTCTTAGGCTGGTTGTAA 59.480 43.478 0.00 0.00 0.00 2.41
143 144 4.164988 AGATGCTCTTAGGCTGGTTGTAAT 59.835 41.667 0.00 0.00 0.00 1.89
144 145 3.609853 TGCTCTTAGGCTGGTTGTAATG 58.390 45.455 0.00 0.00 0.00 1.90
145 146 2.945668 GCTCTTAGGCTGGTTGTAATGG 59.054 50.000 0.00 0.00 0.00 3.16
146 147 3.545703 CTCTTAGGCTGGTTGTAATGGG 58.454 50.000 0.00 0.00 0.00 4.00
147 148 3.186283 TCTTAGGCTGGTTGTAATGGGA 58.814 45.455 0.00 0.00 0.00 4.37
148 149 3.199946 TCTTAGGCTGGTTGTAATGGGAG 59.800 47.826 0.00 0.00 0.00 4.30
149 150 1.372501 AGGCTGGTTGTAATGGGAGT 58.627 50.000 0.00 0.00 0.00 3.85
150 151 2.557869 AGGCTGGTTGTAATGGGAGTA 58.442 47.619 0.00 0.00 0.00 2.59
151 152 3.123273 AGGCTGGTTGTAATGGGAGTAT 58.877 45.455 0.00 0.00 0.00 2.12
152 153 3.136626 AGGCTGGTTGTAATGGGAGTATC 59.863 47.826 0.00 0.00 0.00 2.24
153 154 3.118038 GGCTGGTTGTAATGGGAGTATCA 60.118 47.826 0.00 0.00 36.25 2.15
154 155 3.877508 GCTGGTTGTAATGGGAGTATCAC 59.122 47.826 0.00 0.00 40.71 3.06
167 168 5.960113 GGGAGTATCACAGCTAGTATCATG 58.040 45.833 0.00 0.00 39.41 3.07
168 169 5.406649 GGAGTATCACAGCTAGTATCATGC 58.593 45.833 0.00 0.00 36.25 4.06
169 170 5.047731 GGAGTATCACAGCTAGTATCATGCA 60.048 44.000 0.00 0.00 36.25 3.96
170 171 6.350864 GGAGTATCACAGCTAGTATCATGCAT 60.351 42.308 0.00 0.00 36.25 3.96
171 172 6.396450 AGTATCACAGCTAGTATCATGCATG 58.604 40.000 21.07 21.07 0.00 4.06
172 173 3.396560 TCACAGCTAGTATCATGCATGC 58.603 45.455 22.25 11.82 0.00 4.06
173 174 2.483106 CACAGCTAGTATCATGCATGCC 59.517 50.000 22.25 11.72 0.00 4.40
174 175 2.105306 ACAGCTAGTATCATGCATGCCA 59.895 45.455 22.25 8.84 0.00 4.92
175 176 3.143728 CAGCTAGTATCATGCATGCCAA 58.856 45.455 22.25 5.34 0.00 4.52
176 177 3.058432 CAGCTAGTATCATGCATGCCAAC 60.058 47.826 22.25 17.59 0.00 3.77
177 178 3.144506 GCTAGTATCATGCATGCCAACT 58.855 45.455 22.25 22.78 0.00 3.16
178 179 4.040829 AGCTAGTATCATGCATGCCAACTA 59.959 41.667 22.25 22.70 0.00 2.24
179 180 4.391216 GCTAGTATCATGCATGCCAACTAG 59.609 45.833 32.38 32.38 37.27 2.57
180 181 3.748083 AGTATCATGCATGCCAACTAGG 58.252 45.455 22.25 0.00 41.84 3.02
198 199 3.800628 GCAACTTTGATGAGGTGGC 57.199 52.632 0.00 0.00 34.87 5.01
199 200 0.961019 GCAACTTTGATGAGGTGGCA 59.039 50.000 0.00 0.00 34.87 4.92
200 201 1.547372 GCAACTTTGATGAGGTGGCAT 59.453 47.619 0.00 0.00 34.87 4.40
201 202 2.754552 GCAACTTTGATGAGGTGGCATA 59.245 45.455 0.00 0.00 34.87 3.14
202 203 3.193267 GCAACTTTGATGAGGTGGCATAA 59.807 43.478 0.00 0.00 34.87 1.90
203 204 4.321899 GCAACTTTGATGAGGTGGCATAAA 60.322 41.667 0.00 0.00 34.87 1.40
204 205 5.782047 CAACTTTGATGAGGTGGCATAAAA 58.218 37.500 0.00 0.00 30.59 1.52
205 206 6.400568 CAACTTTGATGAGGTGGCATAAAAT 58.599 36.000 0.00 0.00 30.28 1.82
206 207 6.610075 ACTTTGATGAGGTGGCATAAAATT 57.390 33.333 0.00 0.00 30.28 1.82
207 208 7.716799 ACTTTGATGAGGTGGCATAAAATTA 57.283 32.000 0.00 0.00 30.28 1.40
208 209 8.133024 ACTTTGATGAGGTGGCATAAAATTAA 57.867 30.769 0.00 0.00 30.28 1.40
209 210 8.592809 ACTTTGATGAGGTGGCATAAAATTAAA 58.407 29.630 0.00 0.00 30.28 1.52
210 211 9.603921 CTTTGATGAGGTGGCATAAAATTAAAT 57.396 29.630 0.00 0.00 30.28 1.40
211 212 8.945481 TTGATGAGGTGGCATAAAATTAAATG 57.055 30.769 0.00 0.00 0.00 2.32
212 213 8.303780 TGATGAGGTGGCATAAAATTAAATGA 57.696 30.769 0.00 0.00 0.00 2.57
213 214 8.756927 TGATGAGGTGGCATAAAATTAAATGAA 58.243 29.630 0.00 0.00 0.00 2.57
214 215 9.252962 GATGAGGTGGCATAAAATTAAATGAAG 57.747 33.333 0.00 0.00 0.00 3.02
215 216 8.133024 TGAGGTGGCATAAAATTAAATGAAGT 57.867 30.769 0.00 0.00 0.00 3.01
216 217 9.249053 TGAGGTGGCATAAAATTAAATGAAGTA 57.751 29.630 0.00 0.00 0.00 2.24
270 271 9.856488 ACCGTATCATAATAAATGCTACACTAG 57.144 33.333 0.00 0.00 0.00 2.57
271 272 9.856488 CCGTATCATAATAAATGCTACACTAGT 57.144 33.333 0.00 0.00 0.00 2.57
281 282 7.776933 AAATGCTACACTAGTATGTGTCATG 57.223 36.000 3.46 0.00 46.90 3.07
282 283 4.682787 TGCTACACTAGTATGTGTCATGC 58.317 43.478 3.46 8.05 46.90 4.06
283 284 4.159506 TGCTACACTAGTATGTGTCATGCA 59.840 41.667 3.46 10.15 46.90 3.96
284 285 5.163416 TGCTACACTAGTATGTGTCATGCAT 60.163 40.000 3.46 0.00 46.90 3.96
285 286 5.176406 GCTACACTAGTATGTGTCATGCATG 59.824 44.000 21.07 21.07 46.90 4.06
286 287 4.445453 ACACTAGTATGTGTCATGCATGG 58.555 43.478 25.97 8.61 46.90 3.66
287 288 3.249320 CACTAGTATGTGTCATGCATGGC 59.751 47.826 24.40 24.40 33.61 4.40
288 289 2.423446 AGTATGTGTCATGCATGGCA 57.577 45.000 29.45 29.45 44.86 4.92
289 290 2.725637 AGTATGTGTCATGCATGGCAA 58.274 42.857 34.01 23.37 44.94 4.52
290 291 3.293337 AGTATGTGTCATGCATGGCAAT 58.707 40.909 34.01 27.34 44.94 3.56
291 292 4.463070 AGTATGTGTCATGCATGGCAATA 58.537 39.130 34.01 26.44 44.94 1.90
292 293 4.888823 AGTATGTGTCATGCATGGCAATAA 59.111 37.500 34.01 22.53 44.94 1.40
293 294 4.739587 ATGTGTCATGCATGGCAATAAA 57.260 36.364 34.01 20.14 44.94 1.40
294 295 4.739587 TGTGTCATGCATGGCAATAAAT 57.260 36.364 34.01 0.00 44.94 1.40
295 296 5.848833 TGTGTCATGCATGGCAATAAATA 57.151 34.783 34.01 14.13 44.94 1.40
296 297 6.218108 TGTGTCATGCATGGCAATAAATAA 57.782 33.333 34.01 7.61 44.94 1.40
297 298 6.637657 TGTGTCATGCATGGCAATAAATAAA 58.362 32.000 34.01 6.82 44.94 1.40
298 299 7.101700 TGTGTCATGCATGGCAATAAATAAAA 58.898 30.769 34.01 6.03 44.94 1.52
299 300 7.769507 TGTGTCATGCATGGCAATAAATAAAAT 59.230 29.630 34.01 0.00 44.94 1.82
300 301 8.277713 GTGTCATGCATGGCAATAAATAAAATC 58.722 33.333 34.01 14.19 44.94 2.17
301 302 7.985752 TGTCATGCATGGCAATAAATAAAATCA 59.014 29.630 30.82 2.65 43.62 2.57
302 303 8.995220 GTCATGCATGGCAATAAATAAAATCAT 58.005 29.630 26.04 0.00 43.62 2.45
303 304 9.210329 TCATGCATGGCAATAAATAAAATCATC 57.790 29.630 25.97 0.00 43.62 2.92
304 305 9.214957 CATGCATGGCAATAAATAAAATCATCT 57.785 29.630 19.40 0.00 43.62 2.90
340 341 9.929180 TCATACAATACTATGCATTAGGAAGAC 57.071 33.333 3.54 0.00 31.68 3.01
341 342 9.710900 CATACAATACTATGCATTAGGAAGACA 57.289 33.333 3.54 0.00 31.68 3.41
342 343 9.935241 ATACAATACTATGCATTAGGAAGACAG 57.065 33.333 3.54 0.00 31.68 3.51
343 344 7.796054 ACAATACTATGCATTAGGAAGACAGT 58.204 34.615 3.54 0.88 31.68 3.55
344 345 8.924303 ACAATACTATGCATTAGGAAGACAGTA 58.076 33.333 3.54 3.44 31.68 2.74
345 346 9.935241 CAATACTATGCATTAGGAAGACAGTAT 57.065 33.333 3.54 5.85 31.68 2.12
347 348 7.603180 ACTATGCATTAGGAAGACAGTATCA 57.397 36.000 3.54 0.00 31.68 2.15
348 349 8.200024 ACTATGCATTAGGAAGACAGTATCAT 57.800 34.615 3.54 0.00 31.68 2.45
349 350 9.314133 ACTATGCATTAGGAAGACAGTATCATA 57.686 33.333 3.54 0.00 31.68 2.15
350 351 9.579768 CTATGCATTAGGAAGACAGTATCATAC 57.420 37.037 3.54 0.00 0.00 2.39
351 352 7.360113 TGCATTAGGAAGACAGTATCATACA 57.640 36.000 0.00 0.00 0.00 2.29
352 353 7.210174 TGCATTAGGAAGACAGTATCATACAC 58.790 38.462 0.00 0.00 0.00 2.90
353 354 7.069950 TGCATTAGGAAGACAGTATCATACACT 59.930 37.037 0.00 0.00 0.00 3.55
354 355 8.577296 GCATTAGGAAGACAGTATCATACACTA 58.423 37.037 0.00 0.00 0.00 2.74
356 357 9.869667 ATTAGGAAGACAGTATCATACACTAGT 57.130 33.333 0.00 0.00 0.00 2.57
359 360 9.509956 AGGAAGACAGTATCATACACTAGTATC 57.490 37.037 0.00 0.00 38.88 2.24
360 361 9.286170 GGAAGACAGTATCATACACTAGTATCA 57.714 37.037 0.00 0.00 38.88 2.15
390 391 9.804758 GCATGATACTAACTTATGATACTACCC 57.195 37.037 0.00 0.00 0.00 3.69
400 401 8.326765 ACTTATGATACTACCCATTACAACCA 57.673 34.615 0.00 0.00 0.00 3.67
401 402 8.429641 ACTTATGATACTACCCATTACAACCAG 58.570 37.037 0.00 0.00 0.00 4.00
402 403 5.031066 TGATACTACCCATTACAACCAGC 57.969 43.478 0.00 0.00 0.00 4.85
403 404 2.801077 ACTACCCATTACAACCAGCC 57.199 50.000 0.00 0.00 0.00 4.85
615 633 3.433306 AACGTGGGATCATCAAGGAAA 57.567 42.857 0.00 0.00 0.00 3.13
741 759 4.017130 AGACATGCCCCTTCTTTCCTTAAT 60.017 41.667 0.00 0.00 0.00 1.40
763 781 9.829507 TTAATTTCCATTTGGCCACTTATAATG 57.170 29.630 16.91 16.91 34.44 1.90
764 782 7.673641 ATTTCCATTTGGCCACTTATAATGA 57.326 32.000 23.01 8.49 34.44 2.57
766 784 6.899393 TCCATTTGGCCACTTATAATGATC 57.101 37.500 23.01 0.00 34.44 2.92
772 795 3.746492 GGCCACTTATAATGATCGTGGTC 59.254 47.826 17.47 13.57 45.24 4.02
815 856 1.001520 TGATCCACAGTGTTACCACCG 59.998 52.381 0.00 0.00 42.88 4.94
865 932 0.323178 CACTCTTCAGCCAGGGCATT 60.323 55.000 13.63 0.00 44.88 3.56
866 933 1.065199 CACTCTTCAGCCAGGGCATTA 60.065 52.381 13.63 0.00 44.88 1.90
867 934 1.065126 ACTCTTCAGCCAGGGCATTAC 60.065 52.381 13.63 0.00 44.88 1.89
908 975 1.063806 CGTCGTCAAGGCTCTTTCAG 58.936 55.000 0.00 0.00 0.00 3.02
944 1011 6.989659 TGTCTGGAGGGTATAATCGTAATTC 58.010 40.000 0.00 0.00 0.00 2.17
952 1019 5.867716 GGGTATAATCGTAATTCAGCGACAT 59.132 40.000 2.54 3.02 40.03 3.06
1014 1102 0.963962 AATCAATGCGGCCATCCATC 59.036 50.000 2.24 0.00 0.00 3.51
1066 1161 1.067142 CAGCAGCAGCCATTGAATTGT 60.067 47.619 0.00 0.00 43.56 2.71
1116 1211 1.755959 AGCACACAGAGAGATAGCCAG 59.244 52.381 0.00 0.00 0.00 4.85
1119 1214 1.755959 ACACAGAGAGATAGCCAGCAG 59.244 52.381 0.00 0.00 0.00 4.24
1120 1215 0.752054 ACAGAGAGATAGCCAGCAGC 59.248 55.000 0.00 0.00 44.25 5.25
1314 1424 2.031157 GGCTTACTTGTTGCGTTCATGT 60.031 45.455 0.00 0.00 0.00 3.21
1320 1430 0.872451 TGTTGCGTTCATGTCGTCGT 60.872 50.000 12.58 0.00 0.00 4.34
1351 1473 0.104120 TGTGTGCAGTGTACGAGCTT 59.896 50.000 6.88 0.00 0.00 3.74
1775 6014 3.253188 GTCAACAGGAAGCAACAGCAATA 59.747 43.478 0.00 0.00 0.00 1.90
1856 6105 6.718593 TTGGATATGGGCATTAATACTCCT 57.281 37.500 0.00 0.00 0.00 3.69
1949 6199 7.713734 ATGGCTATATACATTGGTACGTACT 57.286 36.000 24.07 7.61 30.94 2.73
1951 6201 7.596494 TGGCTATATACATTGGTACGTACTTC 58.404 38.462 24.07 10.06 30.94 3.01
1953 6203 7.094032 GGCTATATACATTGGTACGTACTTCCT 60.094 40.741 24.07 5.39 30.94 3.36
1954 6204 8.302438 GCTATATACATTGGTACGTACTTCCTT 58.698 37.037 24.07 9.70 30.94 3.36
1955 6205 9.837525 CTATATACATTGGTACGTACTTCCTTC 57.162 37.037 24.07 7.94 30.94 3.46
1956 6206 3.841643 ACATTGGTACGTACTTCCTTCG 58.158 45.455 24.07 9.79 0.00 3.79
1959 6209 1.812571 TGGTACGTACTTCCTTCGTCC 59.187 52.381 24.07 5.22 38.69 4.79
1960 6210 1.133216 GGTACGTACTTCCTTCGTCCC 59.867 57.143 24.07 0.22 38.69 4.46
1961 6211 1.812571 GTACGTACTTCCTTCGTCCCA 59.187 52.381 18.47 0.00 38.69 4.37
1962 6212 1.331214 ACGTACTTCCTTCGTCCCAA 58.669 50.000 0.00 0.00 32.26 4.12
1964 6214 2.102925 ACGTACTTCCTTCGTCCCAAAA 59.897 45.455 0.00 0.00 32.26 2.44
1965 6215 3.244318 ACGTACTTCCTTCGTCCCAAAAT 60.244 43.478 0.00 0.00 32.26 1.82
1966 6216 3.749609 CGTACTTCCTTCGTCCCAAAATT 59.250 43.478 0.00 0.00 0.00 1.82
1968 6218 4.100279 ACTTCCTTCGTCCCAAAATTCT 57.900 40.909 0.00 0.00 0.00 2.40
1969 6219 4.470602 ACTTCCTTCGTCCCAAAATTCTT 58.529 39.130 0.00 0.00 0.00 2.52
1970 6220 4.278419 ACTTCCTTCGTCCCAAAATTCTTG 59.722 41.667 0.00 0.00 0.00 3.02
1971 6221 3.827722 TCCTTCGTCCCAAAATTCTTGT 58.172 40.909 0.00 0.00 0.00 3.16
1972 6222 3.818773 TCCTTCGTCCCAAAATTCTTGTC 59.181 43.478 0.00 0.00 0.00 3.18
1973 6223 3.821033 CCTTCGTCCCAAAATTCTTGTCT 59.179 43.478 0.00 0.00 0.00 3.41
1976 6226 6.348540 CCTTCGTCCCAAAATTCTTGTCTTAG 60.349 42.308 0.00 0.00 0.00 2.18
1977 6227 5.860611 TCGTCCCAAAATTCTTGTCTTAGA 58.139 37.500 0.00 0.00 0.00 2.10
1978 6228 6.472887 TCGTCCCAAAATTCTTGTCTTAGAT 58.527 36.000 0.00 0.00 0.00 1.98
1979 6229 6.940298 TCGTCCCAAAATTCTTGTCTTAGATT 59.060 34.615 0.00 0.00 0.00 2.40
1980 6230 7.447238 TCGTCCCAAAATTCTTGTCTTAGATTT 59.553 33.333 0.00 0.00 0.00 2.17
1981 6231 8.726988 CGTCCCAAAATTCTTGTCTTAGATTTA 58.273 33.333 0.00 0.00 0.00 1.40
2066 7003 9.884465 ATCTAAAACAAGAATTTTGAGACGAAG 57.116 29.630 0.00 0.00 33.80 3.79
2067 7004 9.104965 TCTAAAACAAGAATTTTGAGACGAAGA 57.895 29.630 0.00 0.00 33.80 2.87
2069 7006 7.553881 AAACAAGAATTTTGAGACGAAGAGA 57.446 32.000 0.00 0.00 0.00 3.10
2135 7105 9.989869 GAAACAAGGAAATAGTACTAGAATTGC 57.010 33.333 8.85 8.60 0.00 3.56
2152 7122 0.674581 TGCTGGATTCTTGGTGCGAG 60.675 55.000 0.00 0.00 0.00 5.03
2155 7125 2.208431 CTGGATTCTTGGTGCGAGATC 58.792 52.381 0.00 0.00 0.00 2.75
2167 7137 0.941936 GCGAGATCTAAAGCCGGCTC 60.942 60.000 32.93 16.88 0.00 4.70
2172 7142 2.965831 AGATCTAAAGCCGGCTCATACA 59.034 45.455 32.93 14.32 0.00 2.29
2198 7168 2.579201 CAATGGGTCTCGCGTCCT 59.421 61.111 5.77 0.00 0.00 3.85
2208 7178 2.186903 CGCGTCCTATTGCACCCT 59.813 61.111 0.00 0.00 0.00 4.34
2285 7898 5.125417 ACAATATTTTCTCCACCCGACAATG 59.875 40.000 0.00 0.00 0.00 2.82
2286 7899 2.649531 TTTTCTCCACCCGACAATGT 57.350 45.000 0.00 0.00 0.00 2.71
2287 7900 3.773418 TTTTCTCCACCCGACAATGTA 57.227 42.857 0.00 0.00 0.00 2.29
2288 7901 3.773418 TTTCTCCACCCGACAATGTAA 57.227 42.857 0.00 0.00 0.00 2.41
2289 7902 3.328382 TTCTCCACCCGACAATGTAAG 57.672 47.619 0.00 0.00 0.00 2.34
2290 7903 2.531771 TCTCCACCCGACAATGTAAGA 58.468 47.619 0.00 0.00 0.00 2.10
2291 7904 2.232941 TCTCCACCCGACAATGTAAGAC 59.767 50.000 0.00 0.00 0.00 3.01
2292 7905 1.972075 TCCACCCGACAATGTAAGACA 59.028 47.619 0.00 0.00 0.00 3.41
2293 7906 2.569853 TCCACCCGACAATGTAAGACAT 59.430 45.455 0.00 0.00 41.31 3.06
2295 7908 3.756434 CCACCCGACAATGTAAGACATTT 59.244 43.478 2.09 0.00 45.80 2.32
2296 7909 4.217550 CCACCCGACAATGTAAGACATTTT 59.782 41.667 2.09 0.00 45.80 1.82
2297 7910 5.278758 CCACCCGACAATGTAAGACATTTTT 60.279 40.000 2.09 0.00 45.80 1.94
2298 7911 5.629020 CACCCGACAATGTAAGACATTTTTG 59.371 40.000 2.09 1.22 45.80 2.44
2299 7912 4.621034 CCCGACAATGTAAGACATTTTTGC 59.379 41.667 2.09 0.00 45.80 3.68
2300 7913 5.218885 CCGACAATGTAAGACATTTTTGCA 58.781 37.500 2.09 0.00 45.80 4.08
2301 7914 5.689514 CCGACAATGTAAGACATTTTTGCAA 59.310 36.000 0.00 0.00 45.80 4.08
2302 7915 6.129115 CCGACAATGTAAGACATTTTTGCAAG 60.129 38.462 0.00 0.00 45.80 4.01
2303 7916 6.529463 ACAATGTAAGACATTTTTGCAAGC 57.471 33.333 0.00 0.00 45.80 4.01
2304 7917 6.282930 ACAATGTAAGACATTTTTGCAAGCT 58.717 32.000 0.00 0.00 45.80 3.74
2305 7918 7.432869 ACAATGTAAGACATTTTTGCAAGCTA 58.567 30.769 0.00 0.00 45.80 3.32
2306 7919 7.925483 ACAATGTAAGACATTTTTGCAAGCTAA 59.075 29.630 0.00 0.00 45.80 3.09
2307 7920 8.763356 CAATGTAAGACATTTTTGCAAGCTAAA 58.237 29.630 0.00 0.00 45.80 1.85
2308 7921 9.492973 AATGTAAGACATTTTTGCAAGCTAAAT 57.507 25.926 0.00 0.14 45.80 1.40
2310 7923 9.624697 TGTAAGACATTTTTGCAAGCTAAATAG 57.375 29.630 7.15 5.57 0.00 1.73
2311 7924 9.076596 GTAAGACATTTTTGCAAGCTAAATAGG 57.923 33.333 7.15 0.79 0.00 2.57
2312 7925 6.633856 AGACATTTTTGCAAGCTAAATAGGG 58.366 36.000 7.15 0.21 0.00 3.53
2313 7926 5.178061 ACATTTTTGCAAGCTAAATAGGGC 58.822 37.500 7.15 0.00 0.00 5.19
2314 7927 5.046376 ACATTTTTGCAAGCTAAATAGGGCT 60.046 36.000 7.15 0.00 40.85 5.19
2330 7943 3.191669 AGGGCTTGCAAAAACGTTTTAC 58.808 40.909 25.44 20.06 0.00 2.01
2341 7954 6.479436 CAAAAACGTTTTACATTTTGGGACC 58.521 36.000 25.44 0.00 38.47 4.46
2343 7956 2.293955 ACGTTTTACATTTTGGGACCGG 59.706 45.455 0.00 0.00 0.00 5.28
2349 7962 0.328258 CATTTTGGGACCGGGAGAGT 59.672 55.000 6.32 0.00 0.00 3.24
2350 7963 1.557832 CATTTTGGGACCGGGAGAGTA 59.442 52.381 6.32 0.00 0.00 2.59
2382 7995 4.620184 AGTGTAATACTCGCGTGAAAGTTC 59.380 41.667 16.04 0.96 33.17 3.01
2412 8025 3.512724 TGGTACTCTAGAGGGGAAAAACG 59.487 47.826 23.50 0.00 0.00 3.60
2475 8129 6.223852 AGAGTCATTCTTCTGCGAAACTTTA 58.776 36.000 0.00 0.00 29.61 1.85
2476 8130 6.146347 AGAGTCATTCTTCTGCGAAACTTTAC 59.854 38.462 0.00 0.00 29.61 2.01
2599 8256 6.263392 GCCTCCATCTTACCCTTTTTCTTATC 59.737 42.308 0.00 0.00 0.00 1.75
2774 8524 6.295039 TCTGTTCGGAAACAAATGACTTAC 57.705 37.500 0.00 0.00 44.53 2.34
2945 8708 3.963676 GTGAGCACCACATTTGCAA 57.036 47.368 0.00 0.00 45.03 4.08
2961 8724 6.415702 CATTTGCAAATGTCAGAAAAGTGTG 58.584 36.000 34.17 13.19 40.61 3.82
2973 8762 4.813161 CAGAAAAGTGTGTGTCTGATCAGT 59.187 41.667 21.92 0.00 39.94 3.41
3023 9090 6.237887 AGTAGTACTCTCTCCGTTCACTAT 57.762 41.667 0.00 0.00 0.00 2.12
3237 9336 5.414789 TCCAGGTTGATGAAACTATTCGA 57.585 39.130 0.00 0.00 38.46 3.71
3238 9337 5.175859 TCCAGGTTGATGAAACTATTCGAC 58.824 41.667 0.00 0.00 38.46 4.20
3239 9338 4.032900 CCAGGTTGATGAAACTATTCGACG 59.967 45.833 0.00 0.00 38.46 5.12
3240 9339 4.625742 CAGGTTGATGAAACTATTCGACGT 59.374 41.667 0.00 0.00 38.46 4.34
3241 9340 4.625742 AGGTTGATGAAACTATTCGACGTG 59.374 41.667 0.00 0.00 38.46 4.49
3242 9341 4.201685 GGTTGATGAAACTATTCGACGTGG 60.202 45.833 0.00 0.00 38.46 4.94
3243 9342 4.182693 TGATGAAACTATTCGACGTGGT 57.817 40.909 0.00 0.00 38.46 4.16
3244 9343 4.562082 TGATGAAACTATTCGACGTGGTT 58.438 39.130 0.00 0.00 38.46 3.67
3245 9344 4.624024 TGATGAAACTATTCGACGTGGTTC 59.376 41.667 0.00 0.00 38.46 3.62
3246 9345 2.981805 TGAAACTATTCGACGTGGTTCG 59.018 45.455 0.00 0.00 40.89 3.95
3247 9346 3.550639 TGAAACTATTCGACGTGGTTCGT 60.551 43.478 0.00 0.00 43.35 3.85
3248 9347 5.028291 TGAAACTATTCGACGTGGTTCGTT 61.028 41.667 0.00 0.00 43.40 3.85
3249 9348 6.790299 TGAAACTATTCGACGTGGTTCGTTC 61.790 44.000 0.00 0.00 43.40 3.95
3250 9349 8.864472 TGAAACTATTCGACGTGGTTCGTTCT 62.864 42.308 0.00 0.00 43.40 3.01
3257 9356 2.362668 CGTGGTTCGTTCTTCAACAC 57.637 50.000 0.00 0.00 32.14 3.32
3258 9357 1.004292 CGTGGTTCGTTCTTCAACACC 60.004 52.381 0.00 0.00 31.77 4.16
3259 9358 1.004292 GTGGTTCGTTCTTCAACACCG 60.004 52.381 0.00 0.00 33.17 4.94
3260 9359 0.584876 GGTTCGTTCTTCAACACCGG 59.415 55.000 0.00 0.00 32.14 5.28
3261 9360 0.041576 GTTCGTTCTTCAACACCGGC 60.042 55.000 0.00 0.00 32.14 6.13
3262 9361 1.492319 TTCGTTCTTCAACACCGGCG 61.492 55.000 0.00 0.00 32.14 6.46
3263 9362 2.943653 GTTCTTCAACACCGGCGG 59.056 61.111 27.06 27.06 32.14 6.13
3264 9363 1.890510 GTTCTTCAACACCGGCGGT 60.891 57.895 28.83 28.83 35.62 5.68
3265 9364 0.600782 GTTCTTCAACACCGGCGGTA 60.601 55.000 33.65 14.16 32.11 4.02
3266 9365 0.322322 TTCTTCAACACCGGCGGTAT 59.678 50.000 33.65 20.52 32.11 2.73
3267 9366 0.108520 TCTTCAACACCGGCGGTATC 60.109 55.000 33.65 0.00 32.11 2.24
3268 9367 0.108329 CTTCAACACCGGCGGTATCT 60.108 55.000 33.65 16.18 32.11 1.98
3269 9368 0.108520 TTCAACACCGGCGGTATCTC 60.109 55.000 33.65 0.00 32.11 2.75
3270 9369 0.968901 TCAACACCGGCGGTATCTCT 60.969 55.000 33.65 11.46 32.11 3.10
3271 9370 0.527817 CAACACCGGCGGTATCTCTC 60.528 60.000 33.65 0.00 32.11 3.20
3272 9371 2.001361 AACACCGGCGGTATCTCTCG 62.001 60.000 33.65 19.85 32.11 4.04
3273 9372 2.184830 CACCGGCGGTATCTCTCGA 61.185 63.158 33.65 0.00 32.11 4.04
3274 9373 1.892862 ACCGGCGGTATCTCTCGAG 60.893 63.158 33.31 5.93 32.11 4.04
3275 9374 2.618219 CCGGCGGTATCTCTCGAGG 61.618 68.421 19.97 3.44 0.00 4.63
3276 9375 2.646143 GGCGGTATCTCTCGAGGC 59.354 66.667 13.56 5.79 0.00 4.70
3277 9376 2.646143 GCGGTATCTCTCGAGGCC 59.354 66.667 13.56 0.00 0.00 5.19
3278 9377 2.921797 GCGGTATCTCTCGAGGCCC 61.922 68.421 13.56 4.79 0.00 5.80
3279 9378 2.269529 CGGTATCTCTCGAGGCCCC 61.270 68.421 13.56 5.14 0.00 5.80
3280 9379 1.154221 GGTATCTCTCGAGGCCCCT 59.846 63.158 13.56 0.00 0.00 4.79
3281 9380 0.896479 GGTATCTCTCGAGGCCCCTC 60.896 65.000 13.56 4.19 39.55 4.30
3282 9381 0.111639 GTATCTCTCGAGGCCCCTCT 59.888 60.000 13.56 0.00 40.69 3.69
3283 9382 0.402504 TATCTCTCGAGGCCCCTCTC 59.597 60.000 13.56 0.00 40.69 3.20
3284 9383 1.360393 ATCTCTCGAGGCCCCTCTCT 61.360 60.000 13.56 0.00 40.69 3.10
3285 9384 1.528309 CTCTCGAGGCCCCTCTCTC 60.528 68.421 13.56 0.00 40.69 3.20
3286 9385 2.520741 CTCGAGGCCCCTCTCTCC 60.521 72.222 3.91 0.00 40.69 3.71
3287 9386 4.144727 TCGAGGCCCCTCTCTCCC 62.145 72.222 12.21 0.00 40.69 4.30
3289 9388 4.467107 GAGGCCCCTCTCTCCCGT 62.467 72.222 0.00 0.00 39.80 5.28
3290 9389 4.467107 AGGCCCCTCTCTCCCGTC 62.467 72.222 0.00 0.00 0.00 4.79
3296 9395 3.878519 CTCTCTCCCGTCCGCGAC 61.879 72.222 8.23 2.72 41.33 5.19
3370 9471 4.179599 CCCCTCCTCCTCCTCCCC 62.180 77.778 0.00 0.00 0.00 4.81
3461 9562 1.437986 CTCTAGGGTTTCTCCGGCG 59.562 63.158 0.00 0.00 37.00 6.46
4124 10228 4.295407 CCCTTCGGGCTCCATCTA 57.705 61.111 0.00 0.00 35.35 1.98
4546 10651 2.444895 GGTTGGTGGGGTTTGGCA 60.445 61.111 0.00 0.00 0.00 4.92
4774 10880 2.741145 TGGGCTGTAGTGGTTTGTTTT 58.259 42.857 0.00 0.00 0.00 2.43
4812 10918 2.332654 GGGTCATCCGCGCTTTGTT 61.333 57.895 5.56 0.00 33.83 2.83
4857 10967 3.230976 TCTTCTTCCTTTTCTTTGGGCC 58.769 45.455 0.00 0.00 0.00 5.80
4874 10984 2.667536 CTGTTGTGCTGCTCGCCT 60.668 61.111 0.00 0.00 38.05 5.52
4897 11008 5.062528 TCAGCATTGTGATGTGTACTTTGA 58.937 37.500 0.00 0.00 34.94 2.69
4929 11040 2.291930 TGGAATACAAAGCGGGGGAAAT 60.292 45.455 0.00 0.00 0.00 2.17
4944 11055 4.322198 GGGGGAAATCCTTTTTCGGTAAAC 60.322 45.833 0.00 0.00 35.95 2.01
4945 11056 4.525487 GGGGAAATCCTTTTTCGGTAAACT 59.475 41.667 0.00 0.00 35.95 2.66
4946 11057 5.711506 GGGGAAATCCTTTTTCGGTAAACTA 59.288 40.000 0.00 0.00 35.95 2.24
4948 11059 7.093640 GGGGAAATCCTTTTTCGGTAAACTATT 60.094 37.037 0.00 0.00 35.95 1.73
4949 11060 7.972277 GGGAAATCCTTTTTCGGTAAACTATTC 59.028 37.037 0.00 0.00 35.95 1.75
4950 11061 8.517056 GGAAATCCTTTTTCGGTAAACTATTCA 58.483 33.333 0.00 0.00 0.00 2.57
4978 11089 0.109132 GCGTTGCTCCCCTTTTGATG 60.109 55.000 0.00 0.00 0.00 3.07
5072 11183 1.214217 TTGGGGCCGTATCCACATTA 58.786 50.000 0.00 0.00 39.68 1.90
5076 11187 0.107831 GGCCGTATCCACATTAGGCA 59.892 55.000 6.61 0.00 45.79 4.75
5126 11237 4.565564 CCCTCCGTGAACTTTTATAAGACG 59.434 45.833 0.00 0.15 35.30 4.18
5127 11238 5.166398 CCTCCGTGAACTTTTATAAGACGT 58.834 41.667 0.00 0.00 35.30 4.34
5156 11267 3.305335 GGTAACCATGCCACAAAGACAAG 60.305 47.826 0.00 0.00 0.00 3.16
5182 11293 7.203255 ACAACTAAGAAAAAGGTGCAGATAC 57.797 36.000 0.00 0.00 34.92 2.24
5193 11304 2.167900 GGTGCAGATACCTAACGAACCT 59.832 50.000 0.00 0.00 37.74 3.50
5226 11337 6.661777 AGTATAGATAATACTCCCTCCGTCC 58.338 44.000 0.00 0.00 46.50 4.79
5227 11338 3.172471 AGATAATACTCCCTCCGTCCC 57.828 52.381 0.00 0.00 0.00 4.46
5228 11339 2.177734 GATAATACTCCCTCCGTCCCC 58.822 57.143 0.00 0.00 0.00 4.81
5229 11340 0.935942 TAATACTCCCTCCGTCCCCA 59.064 55.000 0.00 0.00 0.00 4.96
5230 11341 0.043637 AATACTCCCTCCGTCCCCAA 59.956 55.000 0.00 0.00 0.00 4.12
5231 11342 0.043637 ATACTCCCTCCGTCCCCAAA 59.956 55.000 0.00 0.00 0.00 3.28
5232 11343 0.043637 TACTCCCTCCGTCCCCAAAT 59.956 55.000 0.00 0.00 0.00 2.32
5233 11344 0.845102 ACTCCCTCCGTCCCCAAATT 60.845 55.000 0.00 0.00 0.00 1.82
5234 11345 0.107165 CTCCCTCCGTCCCCAAATTC 60.107 60.000 0.00 0.00 0.00 2.17
5235 11346 0.549169 TCCCTCCGTCCCCAAATTCT 60.549 55.000 0.00 0.00 0.00 2.40
5236 11347 0.331616 CCCTCCGTCCCCAAATTCTT 59.668 55.000 0.00 0.00 0.00 2.52
5237 11348 1.463674 CCTCCGTCCCCAAATTCTTG 58.536 55.000 0.00 0.00 0.00 3.02
5238 11349 1.271926 CCTCCGTCCCCAAATTCTTGT 60.272 52.381 0.00 0.00 0.00 3.16
5239 11350 2.084546 CTCCGTCCCCAAATTCTTGTC 58.915 52.381 0.00 0.00 0.00 3.18
5240 11351 1.702957 TCCGTCCCCAAATTCTTGTCT 59.297 47.619 0.00 0.00 0.00 3.41
5241 11352 2.107552 TCCGTCCCCAAATTCTTGTCTT 59.892 45.455 0.00 0.00 0.00 3.01
5242 11353 3.328343 TCCGTCCCCAAATTCTTGTCTTA 59.672 43.478 0.00 0.00 0.00 2.10
5243 11354 3.689649 CCGTCCCCAAATTCTTGTCTTAG 59.310 47.826 0.00 0.00 0.00 2.18
5244 11355 4.564821 CCGTCCCCAAATTCTTGTCTTAGA 60.565 45.833 0.00 0.00 0.00 2.10
5245 11356 5.186198 CGTCCCCAAATTCTTGTCTTAGAT 58.814 41.667 0.00 0.00 0.00 1.98
5246 11357 5.648092 CGTCCCCAAATTCTTGTCTTAGATT 59.352 40.000 0.00 0.00 0.00 2.40
5247 11358 6.151144 CGTCCCCAAATTCTTGTCTTAGATTT 59.849 38.462 0.00 0.00 0.00 2.17
5248 11359 7.315890 GTCCCCAAATTCTTGTCTTAGATTTG 58.684 38.462 0.00 0.00 0.00 2.32
5249 11360 7.010160 TCCCCAAATTCTTGTCTTAGATTTGT 58.990 34.615 0.00 0.00 0.00 2.83
5250 11361 7.039784 TCCCCAAATTCTTGTCTTAGATTTGTG 60.040 37.037 0.00 0.00 0.00 3.33
5251 11362 7.255942 CCCCAAATTCTTGTCTTAGATTTGTGT 60.256 37.037 0.00 0.00 0.00 3.72
5252 11363 8.792633 CCCAAATTCTTGTCTTAGATTTGTGTA 58.207 33.333 0.00 0.00 0.00 2.90
5253 11364 9.831737 CCAAATTCTTGTCTTAGATTTGTGTAG 57.168 33.333 0.00 0.00 0.00 2.74
5258 11369 9.569167 TTCTTGTCTTAGATTTGTGTAGATACG 57.431 33.333 0.00 0.00 0.00 3.06
5259 11370 8.188799 TCTTGTCTTAGATTTGTGTAGATACGG 58.811 37.037 0.00 0.00 0.00 4.02
5260 11371 7.634671 TGTCTTAGATTTGTGTAGATACGGA 57.365 36.000 0.00 0.00 0.00 4.69
5261 11372 8.234136 TGTCTTAGATTTGTGTAGATACGGAT 57.766 34.615 0.00 0.00 0.00 4.18
5262 11373 8.135529 TGTCTTAGATTTGTGTAGATACGGATG 58.864 37.037 0.00 0.00 0.00 3.51
5263 11374 8.136165 GTCTTAGATTTGTGTAGATACGGATGT 58.864 37.037 0.00 0.00 0.00 3.06
5264 11375 9.346005 TCTTAGATTTGTGTAGATACGGATGTA 57.654 33.333 0.00 0.00 34.45 2.29
5293 11404 7.998753 ACACTAAAATGTAACTAGATACGCC 57.001 36.000 0.00 0.00 0.00 5.68
5294 11405 6.982724 ACACTAAAATGTAACTAGATACGCCC 59.017 38.462 0.00 0.00 0.00 6.13
5295 11406 6.143438 CACTAAAATGTAACTAGATACGCCCG 59.857 42.308 0.00 0.00 0.00 6.13
5296 11407 4.660789 AAATGTAACTAGATACGCCCGT 57.339 40.909 0.00 0.00 0.00 5.28
5297 11408 5.772825 AAATGTAACTAGATACGCCCGTA 57.227 39.130 2.78 2.78 34.87 4.02
5298 11409 5.972107 AATGTAACTAGATACGCCCGTAT 57.028 39.130 12.62 12.62 43.24 3.06
5299 11410 5.972107 ATGTAACTAGATACGCCCGTATT 57.028 39.130 13.78 7.48 40.93 1.89
5300 11411 5.772825 TGTAACTAGATACGCCCGTATTT 57.227 39.130 13.78 11.04 40.93 1.40
5301 11412 6.875948 TGTAACTAGATACGCCCGTATTTA 57.124 37.500 13.78 11.53 40.93 1.40
5302 11413 6.902341 TGTAACTAGATACGCCCGTATTTAG 58.098 40.000 24.69 24.69 44.51 1.85
5303 11414 6.710295 TGTAACTAGATACGCCCGTATTTAGA 59.290 38.462 29.35 15.41 43.05 2.10
5304 11415 5.619625 ACTAGATACGCCCGTATTTAGAC 57.380 43.478 29.35 13.59 43.05 2.59
5305 11416 5.065914 ACTAGATACGCCCGTATTTAGACA 58.934 41.667 29.35 7.84 43.05 3.41
5306 11417 4.924305 AGATACGCCCGTATTTAGACAA 57.076 40.909 13.78 0.00 40.93 3.18
5307 11418 5.266733 AGATACGCCCGTATTTAGACAAA 57.733 39.130 13.78 0.00 40.93 2.83
5308 11419 5.850614 AGATACGCCCGTATTTAGACAAAT 58.149 37.500 13.78 0.00 40.93 2.32
5309 11420 5.924825 AGATACGCCCGTATTTAGACAAATC 59.075 40.000 13.78 0.81 40.93 2.17
5310 11421 4.133013 ACGCCCGTATTTAGACAAATCT 57.867 40.909 0.00 0.00 35.88 2.40
5311 11422 5.266733 ACGCCCGTATTTAGACAAATCTA 57.733 39.130 0.00 0.00 35.88 1.98
5312 11423 5.663456 ACGCCCGTATTTAGACAAATCTAA 58.337 37.500 0.00 0.00 44.17 2.10
5313 11424 5.751990 ACGCCCGTATTTAGACAAATCTAAG 59.248 40.000 0.00 0.00 45.93 2.18
5314 11425 5.981315 CGCCCGTATTTAGACAAATCTAAGA 59.019 40.000 0.00 0.00 45.93 2.10
5315 11426 6.074463 CGCCCGTATTTAGACAAATCTAAGAC 60.074 42.308 0.00 0.83 45.93 3.01
5316 11427 6.759827 GCCCGTATTTAGACAAATCTAAGACA 59.240 38.462 9.81 0.00 45.93 3.41
5317 11428 7.279313 GCCCGTATTTAGACAAATCTAAGACAA 59.721 37.037 9.81 0.00 45.93 3.18
5318 11429 9.158233 CCCGTATTTAGACAAATCTAAGACAAA 57.842 33.333 9.81 0.00 45.93 2.83
5327 11438 9.546428 AGACAAATCTAAGACAAAAATTTTGGG 57.454 29.630 20.79 5.88 31.46 4.12
5328 11439 9.541143 GACAAATCTAAGACAAAAATTTTGGGA 57.459 29.630 20.79 11.34 0.00 4.37
5329 11440 9.325198 ACAAATCTAAGACAAAAATTTTGGGAC 57.675 29.630 20.79 12.19 0.00 4.46
5330 11441 8.487176 CAAATCTAAGACAAAAATTTTGGGACG 58.513 33.333 20.79 6.95 0.00 4.79
5331 11442 6.079424 TCTAAGACAAAAATTTTGGGACGG 57.921 37.500 20.79 9.23 0.00 4.79
5332 11443 5.828859 TCTAAGACAAAAATTTTGGGACGGA 59.171 36.000 20.79 11.04 0.00 4.69
5333 11444 4.584327 AGACAAAAATTTTGGGACGGAG 57.416 40.909 20.79 0.00 0.00 4.63
5334 11445 3.320826 AGACAAAAATTTTGGGACGGAGG 59.679 43.478 20.79 0.00 0.00 4.30
5335 11446 2.367241 ACAAAAATTTTGGGACGGAGGG 59.633 45.455 20.79 0.00 0.00 4.30
5336 11447 2.630580 CAAAAATTTTGGGACGGAGGGA 59.369 45.455 10.41 0.00 0.00 4.20
5337 11448 2.215942 AAATTTTGGGACGGAGGGAG 57.784 50.000 0.00 0.00 0.00 4.30
5343 11454 0.928505 TGGGACGGAGGGAGTACATA 59.071 55.000 0.00 0.00 0.00 2.29
5472 11583 9.897744 TTTAGCATGTTTCTTCACTTATTTCAG 57.102 29.630 0.00 0.00 0.00 3.02
5536 11647 3.889520 AGTGAACGGAGGGAGTATTTC 57.110 47.619 0.00 0.00 0.00 2.17
5550 11661 5.104485 GGGAGTATTTCTTTTAGCAGGGAGA 60.104 44.000 0.00 0.00 0.00 3.71
5551 11662 5.818336 GGAGTATTTCTTTTAGCAGGGAGAC 59.182 44.000 0.00 0.00 0.00 3.36
5555 11666 7.945109 AGTATTTCTTTTAGCAGGGAGACTTTT 59.055 33.333 0.00 0.00 0.00 2.27
5602 11713 2.963782 GGTATCACATACTCCCTCCGTT 59.036 50.000 0.00 0.00 36.04 4.44
5607 11718 1.108776 CATACTCCCTCCGTTCGGAA 58.891 55.000 14.79 0.00 33.41 4.30
5613 11724 3.199289 ACTCCCTCCGTTCGGAATTATTT 59.801 43.478 14.79 0.00 33.41 1.40
5615 11726 3.054948 TCCCTCCGTTCGGAATTATTTGT 60.055 43.478 14.79 0.00 33.41 2.83
5618 11729 3.936453 CTCCGTTCGGAATTATTTGTCCA 59.064 43.478 14.79 0.00 33.41 4.02
5621 13023 4.393680 CCGTTCGGAATTATTTGTCCAAGA 59.606 41.667 5.19 0.00 33.10 3.02
5623 13025 6.375377 CGTTCGGAATTATTTGTCCAAGAAA 58.625 36.000 0.00 0.00 33.10 2.52
5626 13028 9.849166 GTTCGGAATTATTTGTCCAAGAAATAA 57.151 29.630 0.00 0.00 38.81 1.40
5702 13104 8.335532 TGTGATAAGTAATTTCAAACAGAGGG 57.664 34.615 0.00 0.00 0.00 4.30
5703 13105 8.160765 TGTGATAAGTAATTTCAAACAGAGGGA 58.839 33.333 0.00 0.00 0.00 4.20
5705 13107 8.383175 TGATAAGTAATTTCAAACAGAGGGAGT 58.617 33.333 0.00 0.00 0.00 3.85
5706 13108 9.886132 GATAAGTAATTTCAAACAGAGGGAGTA 57.114 33.333 0.00 0.00 0.00 2.59
5708 13110 8.567285 AAGTAATTTCAAACAGAGGGAGTATG 57.433 34.615 0.00 0.00 0.00 2.39
5715 13117 8.934023 TTCAAACAGAGGGAGTATGTTTTATT 57.066 30.769 0.07 0.00 46.21 1.40
5751 13257 6.019720 GCCGTTTTGAAGTTAAAAATCGGAAA 60.020 34.615 26.74 0.00 40.09 3.13
5785 14595 5.372959 TCCAGTCTACATACTCCCTCTGTAT 59.627 44.000 0.00 0.00 0.00 2.29
5813 14648 0.396974 AAGAGCAAACAACAGGCCCA 60.397 50.000 0.00 0.00 0.00 5.36
5854 14691 7.642071 AATACAAACACATGCAAATTCAGAC 57.358 32.000 0.00 0.00 0.00 3.51
5903 14740 6.144078 TCATAGTGTCACGTAGCATATGTT 57.856 37.500 4.29 0.08 39.16 2.71
5928 14765 8.589701 TCCTATTTGAGTATTGTCAGTCTACA 57.410 34.615 0.00 0.00 0.00 2.74
5970 14942 5.649782 TTGAAATCTCCTGAAGAATTGCC 57.350 39.130 0.00 0.00 37.61 4.52
6003 14991 6.307800 GCATGCGTTGTCAAAATTTATACTGT 59.692 34.615 0.00 0.00 0.00 3.55
6004 14992 7.483375 GCATGCGTTGTCAAAATTTATACTGTA 59.517 33.333 0.00 0.00 0.00 2.74
6005 14993 9.502145 CATGCGTTGTCAAAATTTATACTGTAT 57.498 29.630 5.53 5.53 0.00 2.29
6478 15466 1.002134 CACGAGCATGGGAAGGGTT 60.002 57.895 0.00 0.00 0.00 4.11
6631 15619 3.315949 AAGGCGGCGGTCAAGGTA 61.316 61.111 9.78 0.00 0.00 3.08
6967 15961 3.011517 AGGGGGATCACGCTGCTT 61.012 61.111 14.68 0.00 31.87 3.91
7075 16072 4.457496 CATGGACCTGACGCCGCT 62.457 66.667 0.00 0.00 0.00 5.52
7525 16525 1.923356 AATTGGATGTTTCGGCCTGT 58.077 45.000 0.00 0.00 0.00 4.00
7526 16526 2.799126 ATTGGATGTTTCGGCCTGTA 57.201 45.000 0.00 0.00 0.00 2.74
7568 16568 3.252974 AGAATGTCGATGAAGTGGTCC 57.747 47.619 0.00 0.00 0.00 4.46
7602 16602 8.897457 AACGATATATACTCATTACTGAAGCG 57.103 34.615 0.00 0.00 0.00 4.68
7603 16603 8.265165 ACGATATATACTCATTACTGAAGCGA 57.735 34.615 0.00 0.00 0.00 4.93
7604 16604 8.894731 ACGATATATACTCATTACTGAAGCGAT 58.105 33.333 0.00 0.00 0.00 4.58
7605 16605 9.163903 CGATATATACTCATTACTGAAGCGATG 57.836 37.037 0.00 0.00 0.00 3.84
7606 16606 8.864069 ATATATACTCATTACTGAAGCGATGC 57.136 34.615 0.00 0.00 0.00 3.91
7607 16607 3.251479 ACTCATTACTGAAGCGATGCA 57.749 42.857 0.00 0.00 0.00 3.96
7608 16608 3.599343 ACTCATTACTGAAGCGATGCAA 58.401 40.909 0.00 0.00 0.00 4.08
7609 16609 4.194640 ACTCATTACTGAAGCGATGCAAT 58.805 39.130 0.00 0.00 0.00 3.56
7610 16610 5.359756 ACTCATTACTGAAGCGATGCAATA 58.640 37.500 0.00 0.00 0.00 1.90
7611 16611 5.235186 ACTCATTACTGAAGCGATGCAATAC 59.765 40.000 0.00 0.00 0.00 1.89
7612 16612 5.359756 TCATTACTGAAGCGATGCAATACT 58.640 37.500 0.00 0.00 0.00 2.12
7613 16613 5.463392 TCATTACTGAAGCGATGCAATACTC 59.537 40.000 0.00 0.00 0.00 2.59
7614 16614 3.251479 ACTGAAGCGATGCAATACTCA 57.749 42.857 0.00 0.00 0.00 3.41
7615 16615 3.801698 ACTGAAGCGATGCAATACTCAT 58.198 40.909 0.00 0.00 0.00 2.90
7616 16616 4.194640 ACTGAAGCGATGCAATACTCATT 58.805 39.130 0.00 0.00 0.00 2.57
7617 16617 5.359756 ACTGAAGCGATGCAATACTCATTA 58.640 37.500 0.00 0.00 0.00 1.90
7618 16618 5.235186 ACTGAAGCGATGCAATACTCATTAC 59.765 40.000 0.00 0.00 0.00 1.89
7619 16619 5.359756 TGAAGCGATGCAATACTCATTACT 58.640 37.500 0.00 0.00 0.00 2.24
7620 16620 5.234972 TGAAGCGATGCAATACTCATTACTG 59.765 40.000 0.00 0.00 0.00 2.74
7621 16621 4.948847 AGCGATGCAATACTCATTACTGA 58.051 39.130 0.00 0.00 0.00 3.41
7622 16622 5.359756 AGCGATGCAATACTCATTACTGAA 58.640 37.500 0.00 0.00 0.00 3.02
7623 16623 5.817296 AGCGATGCAATACTCATTACTGAAA 59.183 36.000 0.00 0.00 0.00 2.69
7624 16624 6.484643 AGCGATGCAATACTCATTACTGAAAT 59.515 34.615 0.00 0.00 0.00 2.17
7625 16625 6.794158 GCGATGCAATACTCATTACTGAAATC 59.206 38.462 0.00 0.00 0.00 2.17
7626 16626 7.005958 CGATGCAATACTCATTACTGAAATCG 58.994 38.462 0.00 0.00 0.00 3.34
7627 16627 7.306807 CGATGCAATACTCATTACTGAAATCGT 60.307 37.037 0.00 0.00 0.00 3.73
7628 16628 7.234187 TGCAATACTCATTACTGAAATCGTC 57.766 36.000 0.00 0.00 0.00 4.20
7629 16629 6.816140 TGCAATACTCATTACTGAAATCGTCA 59.184 34.615 0.00 0.00 34.17 4.35
7630 16630 7.495606 TGCAATACTCATTACTGAAATCGTCAT 59.504 33.333 0.00 0.00 35.07 3.06
7631 16631 7.795734 GCAATACTCATTACTGAAATCGTCATG 59.204 37.037 0.00 0.00 35.07 3.07
7632 16632 8.820933 CAATACTCATTACTGAAATCGTCATGT 58.179 33.333 0.00 0.00 35.07 3.21
7635 16635 8.581057 ACTCATTACTGAAATCGTCATGTATC 57.419 34.615 0.00 0.00 35.07 2.24
7636 16636 8.417106 ACTCATTACTGAAATCGTCATGTATCT 58.583 33.333 0.00 0.00 35.07 1.98
7637 16637 8.803201 TCATTACTGAAATCGTCATGTATCTC 57.197 34.615 0.00 0.00 35.07 2.75
7638 16638 8.413229 TCATTACTGAAATCGTCATGTATCTCA 58.587 33.333 0.00 0.00 35.07 3.27
7639 16639 9.034544 CATTACTGAAATCGTCATGTATCTCAA 57.965 33.333 0.00 0.00 35.07 3.02
7640 16640 8.996024 TTACTGAAATCGTCATGTATCTCAAA 57.004 30.769 0.00 0.00 35.07 2.69
7641 16641 9.599866 TTACTGAAATCGTCATGTATCTCAAAT 57.400 29.630 0.00 0.00 35.07 2.32
7643 16643 9.599866 ACTGAAATCGTCATGTATCTCAAATAA 57.400 29.630 0.00 0.00 35.07 1.40
7654 16654 6.464222 TGTATCTCAAATAATAGAAGGGCGG 58.536 40.000 0.00 0.00 0.00 6.13
7813 16814 4.096003 CGCGGGACAATGGGGACT 62.096 66.667 0.00 0.00 0.00 3.85
7920 16921 1.667830 CAATGTCGCGAGGTGGTGT 60.668 57.895 10.24 0.00 0.00 4.16
7939 16940 4.287781 TGCGTTCGAACTGCCCGA 62.288 61.111 28.92 16.19 0.00 5.14
8050 17083 1.884579 GTGTCTGGAGGTCTACAACGA 59.115 52.381 0.00 0.00 0.00 3.85
8118 17152 4.739793 TCCATCTTCACAGGTTTTGGATT 58.260 39.130 0.00 0.00 0.00 3.01
8129 17163 2.102252 GGTTTTGGATTGTGGCTTGTCA 59.898 45.455 0.00 0.00 0.00 3.58
8139 17173 2.577059 GCTTGTCACCGGATCCGA 59.423 61.111 35.42 13.31 42.83 4.55
8147 17181 4.918201 CCGGATCCGAAGCAGGCC 62.918 72.222 35.42 0.00 42.83 5.19
8477 17512 2.586773 GGCGTTCTATCTTCCGCGC 61.587 63.158 0.00 0.00 46.62 6.86
8479 17514 1.065928 CGTTCTATCTTCCGCGCCT 59.934 57.895 0.00 0.00 0.00 5.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.947255 CTATAATGCAGCGCGCGCG 62.947 63.158 45.73 45.73 46.97 6.86
7 8 2.202096 CTATAATGCAGCGCGCGC 60.202 61.111 45.10 45.10 46.97 6.86
8 9 2.202096 GCTATAATGCAGCGCGCG 60.202 61.111 28.44 28.44 46.97 6.86
13 14 2.174349 GCGGCGCTATAATGCAGC 59.826 61.111 26.86 5.49 44.40 5.25
14 15 1.494628 CAGCGGCGCTATAATGCAG 59.505 57.895 35.90 15.93 36.40 4.41
15 16 2.606961 GCAGCGGCGCTATAATGCA 61.607 57.895 35.90 0.00 36.40 3.96
16 17 2.174349 GCAGCGGCGCTATAATGC 59.826 61.111 35.90 29.03 36.40 3.56
71 72 1.875419 AAAAATCTGTTTGCGCGCGC 61.875 50.000 45.02 45.02 42.35 6.86
72 73 2.132402 AAAAATCTGTTTGCGCGCG 58.868 47.368 28.44 28.44 0.00 6.86
101 102 0.446222 TTCAACAGCCGCGATAAAGC 59.554 50.000 8.23 0.66 0.00 3.51
102 103 1.999735 TCTTCAACAGCCGCGATAAAG 59.000 47.619 8.23 1.33 0.00 1.85
103 104 2.087501 TCTTCAACAGCCGCGATAAA 57.912 45.000 8.23 0.00 0.00 1.40
104 105 1.933181 CATCTTCAACAGCCGCGATAA 59.067 47.619 8.23 0.00 0.00 1.75
105 106 1.570813 CATCTTCAACAGCCGCGATA 58.429 50.000 8.23 0.00 0.00 2.92
106 107 1.709147 GCATCTTCAACAGCCGCGAT 61.709 55.000 8.23 0.00 0.00 4.58
107 108 2.390599 GCATCTTCAACAGCCGCGA 61.391 57.895 8.23 0.00 0.00 5.87
108 109 2.099062 GCATCTTCAACAGCCGCG 59.901 61.111 0.00 0.00 0.00 6.46
109 110 1.427020 GAGCATCTTCAACAGCCGC 59.573 57.895 0.00 0.00 0.00 6.53
121 122 2.409948 ACAACCAGCCTAAGAGCATC 57.590 50.000 0.00 0.00 34.23 3.91
122 123 4.202441 CATTACAACCAGCCTAAGAGCAT 58.798 43.478 0.00 0.00 34.23 3.79
123 124 3.609853 CATTACAACCAGCCTAAGAGCA 58.390 45.455 0.00 0.00 34.23 4.26
124 125 2.945668 CCATTACAACCAGCCTAAGAGC 59.054 50.000 0.00 0.00 0.00 4.09
125 126 3.199946 TCCCATTACAACCAGCCTAAGAG 59.800 47.826 0.00 0.00 0.00 2.85
126 127 3.186283 TCCCATTACAACCAGCCTAAGA 58.814 45.455 0.00 0.00 0.00 2.10
127 128 3.054361 ACTCCCATTACAACCAGCCTAAG 60.054 47.826 0.00 0.00 0.00 2.18
128 129 2.916934 ACTCCCATTACAACCAGCCTAA 59.083 45.455 0.00 0.00 0.00 2.69
129 130 2.557869 ACTCCCATTACAACCAGCCTA 58.442 47.619 0.00 0.00 0.00 3.93
130 131 1.372501 ACTCCCATTACAACCAGCCT 58.627 50.000 0.00 0.00 0.00 4.58
131 132 3.118038 TGATACTCCCATTACAACCAGCC 60.118 47.826 0.00 0.00 0.00 4.85
132 133 3.877508 GTGATACTCCCATTACAACCAGC 59.122 47.826 0.00 0.00 0.00 4.85
133 134 5.097742 TGTGATACTCCCATTACAACCAG 57.902 43.478 0.00 0.00 0.00 4.00
134 135 4.625324 GCTGTGATACTCCCATTACAACCA 60.625 45.833 0.00 0.00 0.00 3.67
135 136 3.877508 GCTGTGATACTCCCATTACAACC 59.122 47.826 0.00 0.00 0.00 3.77
136 137 4.770795 AGCTGTGATACTCCCATTACAAC 58.229 43.478 0.00 0.00 0.00 3.32
137 138 5.661312 ACTAGCTGTGATACTCCCATTACAA 59.339 40.000 0.00 0.00 0.00 2.41
138 139 5.208890 ACTAGCTGTGATACTCCCATTACA 58.791 41.667 0.00 0.00 0.00 2.41
139 140 5.793030 ACTAGCTGTGATACTCCCATTAC 57.207 43.478 0.00 0.00 0.00 1.89
140 141 7.238710 TGATACTAGCTGTGATACTCCCATTA 58.761 38.462 0.00 0.00 0.00 1.90
141 142 6.077993 TGATACTAGCTGTGATACTCCCATT 58.922 40.000 0.00 0.00 0.00 3.16
142 143 5.645201 TGATACTAGCTGTGATACTCCCAT 58.355 41.667 0.00 0.00 0.00 4.00
143 144 5.061721 TGATACTAGCTGTGATACTCCCA 57.938 43.478 0.00 0.00 0.00 4.37
144 145 5.623368 GCATGATACTAGCTGTGATACTCCC 60.623 48.000 0.00 0.00 0.00 4.30
145 146 5.047731 TGCATGATACTAGCTGTGATACTCC 60.048 44.000 0.00 0.00 0.00 3.85
146 147 6.018589 TGCATGATACTAGCTGTGATACTC 57.981 41.667 0.00 0.00 0.00 2.59
147 148 6.396450 CATGCATGATACTAGCTGTGATACT 58.604 40.000 22.59 0.00 0.00 2.12
148 149 5.063186 GCATGCATGATACTAGCTGTGATAC 59.937 44.000 30.64 2.07 0.00 2.24
149 150 5.173664 GCATGCATGATACTAGCTGTGATA 58.826 41.667 30.64 0.00 0.00 2.15
150 151 4.001652 GCATGCATGATACTAGCTGTGAT 58.998 43.478 30.64 0.00 0.00 3.06
151 152 3.396560 GCATGCATGATACTAGCTGTGA 58.603 45.455 30.64 0.00 0.00 3.58
152 153 2.483106 GGCATGCATGATACTAGCTGTG 59.517 50.000 30.64 0.23 0.00 3.66
153 154 2.105306 TGGCATGCATGATACTAGCTGT 59.895 45.455 30.64 0.00 0.00 4.40
154 155 2.774687 TGGCATGCATGATACTAGCTG 58.225 47.619 30.64 1.04 0.00 4.24
155 156 3.144506 GTTGGCATGCATGATACTAGCT 58.855 45.455 30.64 0.00 0.00 3.32
156 157 3.144506 AGTTGGCATGCATGATACTAGC 58.855 45.455 30.64 12.56 0.00 3.42
157 158 4.934001 CCTAGTTGGCATGCATGATACTAG 59.066 45.833 31.40 31.40 36.03 2.57
158 159 4.898320 CCTAGTTGGCATGCATGATACTA 58.102 43.478 30.64 25.87 0.00 1.82
159 160 3.748083 CCTAGTTGGCATGCATGATACT 58.252 45.455 30.64 26.11 0.00 2.12
172 173 3.441572 CCTCATCAAAGTTGCCTAGTTGG 59.558 47.826 0.00 0.00 39.35 3.77
173 174 4.074970 ACCTCATCAAAGTTGCCTAGTTG 58.925 43.478 0.00 0.00 0.00 3.16
174 175 4.074970 CACCTCATCAAAGTTGCCTAGTT 58.925 43.478 0.00 0.00 0.00 2.24
175 176 3.560025 CCACCTCATCAAAGTTGCCTAGT 60.560 47.826 0.00 0.00 0.00 2.57
176 177 3.012518 CCACCTCATCAAAGTTGCCTAG 58.987 50.000 0.00 0.00 0.00 3.02
177 178 2.879756 GCCACCTCATCAAAGTTGCCTA 60.880 50.000 0.00 0.00 0.00 3.93
178 179 1.915141 CCACCTCATCAAAGTTGCCT 58.085 50.000 0.00 0.00 0.00 4.75
179 180 0.244721 GCCACCTCATCAAAGTTGCC 59.755 55.000 0.00 0.00 0.00 4.52
180 181 0.961019 TGCCACCTCATCAAAGTTGC 59.039 50.000 0.00 0.00 0.00 4.17
181 182 5.389859 TTTATGCCACCTCATCAAAGTTG 57.610 39.130 0.00 0.00 0.00 3.16
182 183 6.610075 ATTTTATGCCACCTCATCAAAGTT 57.390 33.333 0.00 0.00 0.00 2.66
183 184 6.610075 AATTTTATGCCACCTCATCAAAGT 57.390 33.333 0.00 0.00 0.00 2.66
184 185 9.603921 ATTTAATTTTATGCCACCTCATCAAAG 57.396 29.630 0.00 0.00 0.00 2.77
185 186 9.381033 CATTTAATTTTATGCCACCTCATCAAA 57.619 29.630 0.00 0.00 0.00 2.69
186 187 8.756927 TCATTTAATTTTATGCCACCTCATCAA 58.243 29.630 0.00 0.00 0.00 2.57
187 188 8.303780 TCATTTAATTTTATGCCACCTCATCA 57.696 30.769 0.00 0.00 0.00 3.07
188 189 9.252962 CTTCATTTAATTTTATGCCACCTCATC 57.747 33.333 0.00 0.00 0.00 2.92
189 190 8.761689 ACTTCATTTAATTTTATGCCACCTCAT 58.238 29.630 0.00 0.00 0.00 2.90
190 191 8.133024 ACTTCATTTAATTTTATGCCACCTCA 57.867 30.769 0.00 0.00 0.00 3.86
208 209 9.249053 TGATACTCAACTCTCTCTTACTTCATT 57.751 33.333 0.00 0.00 0.00 2.57
209 210 8.815565 TGATACTCAACTCTCTCTTACTTCAT 57.184 34.615 0.00 0.00 0.00 2.57
210 211 8.815565 ATGATACTCAACTCTCTCTTACTTCA 57.184 34.615 0.00 0.00 0.00 3.02
216 217 9.585369 TCATGATATGATACTCAACTCTCTCTT 57.415 33.333 0.00 0.00 33.59 2.85
244 245 9.856488 CTAGTGTAGCATTTATTATGATACGGT 57.144 33.333 8.18 0.00 42.05 4.83
245 246 9.856488 ACTAGTGTAGCATTTATTATGATACGG 57.144 33.333 0.00 2.94 42.05 4.02
262 263 9.976056 TGCCATGCATGACACATACTAGTGTAG 62.976 44.444 28.31 5.81 42.57 2.74
263 264 8.307927 TGCCATGCATGACACATACTAGTGTA 62.308 42.308 28.31 2.94 42.57 2.90
264 265 7.601456 TGCCATGCATGACACATACTAGTGT 62.601 44.000 28.31 0.00 44.07 3.55
265 266 3.249320 GCCATGCATGACACATACTAGTG 59.751 47.826 28.31 7.28 44.93 2.74
266 267 3.118298 TGCCATGCATGACACATACTAGT 60.118 43.478 28.31 0.00 31.71 2.57
267 268 3.469739 TGCCATGCATGACACATACTAG 58.530 45.455 28.31 8.01 31.71 2.57
268 269 3.557228 TGCCATGCATGACACATACTA 57.443 42.857 28.31 0.00 31.71 1.82
269 270 2.423446 TGCCATGCATGACACATACT 57.577 45.000 28.31 0.00 31.71 2.12
270 271 3.720949 ATTGCCATGCATGACACATAC 57.279 42.857 28.31 8.36 38.76 2.39
271 272 5.848833 TTTATTGCCATGCATGACACATA 57.151 34.783 28.31 17.78 38.76 2.29
272 273 4.739587 TTTATTGCCATGCATGACACAT 57.260 36.364 28.31 18.68 38.76 3.21
273 274 4.739587 ATTTATTGCCATGCATGACACA 57.260 36.364 28.31 18.81 38.76 3.72
274 275 7.536895 TTTTATTTATTGCCATGCATGACAC 57.463 32.000 28.31 16.49 38.76 3.67
275 276 7.985752 TGATTTTATTTATTGCCATGCATGACA 59.014 29.630 28.31 20.53 38.76 3.58
276 277 8.367943 TGATTTTATTTATTGCCATGCATGAC 57.632 30.769 28.31 17.77 38.76 3.06
277 278 9.210329 GATGATTTTATTTATTGCCATGCATGA 57.790 29.630 28.31 8.76 38.76 3.07
278 279 9.214957 AGATGATTTTATTTATTGCCATGCATG 57.785 29.630 20.19 20.19 38.76 4.06
314 315 9.929180 GTCTTCCTAATGCATAGTATTGTATGA 57.071 33.333 0.00 0.00 32.88 2.15
315 316 9.710900 TGTCTTCCTAATGCATAGTATTGTATG 57.289 33.333 0.00 0.00 34.07 2.39
316 317 9.935241 CTGTCTTCCTAATGCATAGTATTGTAT 57.065 33.333 0.00 0.00 0.00 2.29
317 318 8.924303 ACTGTCTTCCTAATGCATAGTATTGTA 58.076 33.333 0.00 0.00 0.00 2.41
318 319 7.796054 ACTGTCTTCCTAATGCATAGTATTGT 58.204 34.615 0.00 0.00 0.00 2.71
319 320 9.935241 ATACTGTCTTCCTAATGCATAGTATTG 57.065 33.333 0.00 0.00 0.00 1.90
321 322 9.314133 TGATACTGTCTTCCTAATGCATAGTAT 57.686 33.333 11.08 11.08 33.08 2.12
322 323 8.706322 TGATACTGTCTTCCTAATGCATAGTA 57.294 34.615 0.00 0.81 0.00 1.82
323 324 7.603180 TGATACTGTCTTCCTAATGCATAGT 57.397 36.000 0.00 0.00 0.00 2.12
324 325 9.579768 GTATGATACTGTCTTCCTAATGCATAG 57.420 37.037 0.00 0.00 0.00 2.23
325 326 9.088987 TGTATGATACTGTCTTCCTAATGCATA 57.911 33.333 0.00 0.00 0.00 3.14
326 327 7.875041 GTGTATGATACTGTCTTCCTAATGCAT 59.125 37.037 4.03 0.00 0.00 3.96
327 328 7.069950 AGTGTATGATACTGTCTTCCTAATGCA 59.930 37.037 4.03 0.00 0.00 3.96
328 329 7.437748 AGTGTATGATACTGTCTTCCTAATGC 58.562 38.462 4.03 0.00 0.00 3.56
330 331 9.869667 ACTAGTGTATGATACTGTCTTCCTAAT 57.130 33.333 4.03 0.00 0.00 1.73
333 334 9.509956 GATACTAGTGTATGATACTGTCTTCCT 57.490 37.037 5.39 0.00 39.29 3.36
334 335 9.286170 TGATACTAGTGTATGATACTGTCTTCC 57.714 37.037 5.39 0.00 39.29 3.46
364 365 9.804758 GGGTAGTATCATAAGTTAGTATCATGC 57.195 37.037 0.00 0.00 0.00 4.06
374 375 8.774183 TGGTTGTAATGGGTAGTATCATAAGTT 58.226 33.333 0.00 0.00 0.00 2.66
375 376 8.326765 TGGTTGTAATGGGTAGTATCATAAGT 57.673 34.615 0.00 0.00 0.00 2.24
376 377 7.387948 GCTGGTTGTAATGGGTAGTATCATAAG 59.612 40.741 0.00 0.00 0.00 1.73
377 378 7.221450 GCTGGTTGTAATGGGTAGTATCATAA 58.779 38.462 0.00 0.00 0.00 1.90
378 379 6.239772 GGCTGGTTGTAATGGGTAGTATCATA 60.240 42.308 0.00 0.00 0.00 2.15
379 380 5.456186 GGCTGGTTGTAATGGGTAGTATCAT 60.456 44.000 0.00 0.00 0.00 2.45
380 381 4.141574 GGCTGGTTGTAATGGGTAGTATCA 60.142 45.833 0.00 0.00 0.00 2.15
381 382 4.102681 AGGCTGGTTGTAATGGGTAGTATC 59.897 45.833 0.00 0.00 0.00 2.24
382 383 4.045022 AGGCTGGTTGTAATGGGTAGTAT 58.955 43.478 0.00 0.00 0.00 2.12
383 384 3.456842 AGGCTGGTTGTAATGGGTAGTA 58.543 45.455 0.00 0.00 0.00 1.82
384 385 2.275466 AGGCTGGTTGTAATGGGTAGT 58.725 47.619 0.00 0.00 0.00 2.73
385 386 3.366052 AAGGCTGGTTGTAATGGGTAG 57.634 47.619 0.00 0.00 0.00 3.18
386 387 3.371166 GCTAAGGCTGGTTGTAATGGGTA 60.371 47.826 0.00 0.00 35.22 3.69
387 388 2.620627 GCTAAGGCTGGTTGTAATGGGT 60.621 50.000 0.00 0.00 35.22 4.51
388 389 2.024414 GCTAAGGCTGGTTGTAATGGG 58.976 52.381 0.00 0.00 35.22 4.00
401 402 4.158394 TGATGGAAATTGAACAGCTAAGGC 59.842 41.667 0.00 0.00 39.06 4.35
402 403 5.902613 TGATGGAAATTGAACAGCTAAGG 57.097 39.130 0.00 0.00 0.00 2.69
403 404 6.460676 GGGATGATGGAAATTGAACAGCTAAG 60.461 42.308 0.00 0.00 0.00 2.18
667 685 1.269723 CGAGCGCTCCTATTGTCCATA 59.730 52.381 30.66 0.00 0.00 2.74
705 723 1.077501 ATGTCTGGTGGCCGGAATG 60.078 57.895 5.05 0.00 41.00 2.67
741 759 7.469870 CGATCATTATAAGTGGCCAAATGGAAA 60.470 37.037 21.44 7.92 37.39 3.13
763 781 1.293924 CCAATGCTCAGACCACGATC 58.706 55.000 0.00 0.00 0.00 3.69
764 782 0.107508 CCCAATGCTCAGACCACGAT 60.108 55.000 0.00 0.00 0.00 3.73
766 784 2.401766 GCCCAATGCTCAGACCACG 61.402 63.158 0.00 0.00 36.87 4.94
772 795 2.034879 AACGTCGCCCAATGCTCAG 61.035 57.895 0.00 0.00 38.05 3.35
828 888 0.950836 TGGTGGCAATTCACGTCAAG 59.049 50.000 0.00 0.00 38.46 3.02
833 893 1.197721 GAAGAGTGGTGGCAATTCACG 59.802 52.381 9.98 0.00 38.46 4.35
865 932 1.651240 GCACTAGACCGACGCAGGTA 61.651 60.000 0.00 0.00 46.09 3.08
867 934 2.202623 GCACTAGACCGACGCAGG 60.203 66.667 0.00 0.00 37.30 4.85
944 1011 1.081892 CCTTCTGACCAATGTCGCTG 58.918 55.000 0.00 0.00 44.86 5.18
952 1019 0.473694 TCTGGCTCCCTTCTGACCAA 60.474 55.000 0.00 0.00 0.00 3.67
1014 1102 2.307768 TCCCCTGACGAGCTACTTATG 58.692 52.381 0.00 0.00 0.00 1.90
1043 1131 3.068691 CAATGGCTGCTGCTGCCT 61.069 61.111 38.41 26.10 46.43 4.75
1084 1179 0.112218 TGTGTGCTGGGTTTAGCCAT 59.888 50.000 0.46 0.00 43.02 4.40
1120 1215 3.826754 CATGGCCTGCTGCTGCTG 61.827 66.667 17.00 15.58 40.92 4.41
1333 1455 1.217882 AAAGCTCGTACACTGCACAC 58.782 50.000 0.00 0.00 0.00 3.82
1351 1473 1.471119 AGTACGCCATCCTCTCGAAA 58.529 50.000 0.00 0.00 0.00 3.46
1582 1708 1.205893 AGGCGAGGATGAAGACTGAAC 59.794 52.381 0.00 0.00 0.00 3.18
1838 6080 6.182507 ACGAAAGGAGTATTAATGCCCATA 57.817 37.500 11.59 0.00 0.00 2.74
1883 6132 5.648178 TTCACTTTGCTCCGTATGTAGTA 57.352 39.130 0.00 0.00 0.00 1.82
1940 6190 2.551355 GGACGAAGGAAGTACGTACC 57.449 55.000 21.80 7.35 40.29 3.34
1944 6194 2.443887 TTTGGGACGAAGGAAGTACG 57.556 50.000 0.00 0.00 0.00 3.67
1949 6199 4.211920 ACAAGAATTTTGGGACGAAGGAA 58.788 39.130 0.00 0.00 0.00 3.36
1951 6201 3.821033 AGACAAGAATTTTGGGACGAAGG 59.179 43.478 0.00 0.00 0.00 3.46
1953 6203 6.292923 TCTAAGACAAGAATTTTGGGACGAA 58.707 36.000 0.00 0.00 0.00 3.85
1954 6204 5.860611 TCTAAGACAAGAATTTTGGGACGA 58.139 37.500 0.00 0.00 0.00 4.20
1955 6205 6.743575 ATCTAAGACAAGAATTTTGGGACG 57.256 37.500 5.68 0.00 0.00 4.79
2041 6978 9.104965 TCTTCGTCTCAAAATTCTTGTTTTAGA 57.895 29.630 0.00 0.00 30.56 2.10
2042 6979 9.374960 CTCTTCGTCTCAAAATTCTTGTTTTAG 57.625 33.333 0.00 0.00 30.56 1.85
2043 6980 9.104965 TCTCTTCGTCTCAAAATTCTTGTTTTA 57.895 29.630 0.00 0.00 30.56 1.52
2047 6984 6.284459 ACTCTCTTCGTCTCAAAATTCTTGT 58.716 36.000 0.00 0.00 0.00 3.16
2048 6985 6.777526 ACTCTCTTCGTCTCAAAATTCTTG 57.222 37.500 0.00 0.00 0.00 3.02
2049 6986 7.662897 ACTACTCTCTTCGTCTCAAAATTCTT 58.337 34.615 0.00 0.00 0.00 2.52
2050 6987 7.222000 ACTACTCTCTTCGTCTCAAAATTCT 57.778 36.000 0.00 0.00 0.00 2.40
2051 6988 9.015577 CATACTACTCTCTTCGTCTCAAAATTC 57.984 37.037 0.00 0.00 0.00 2.17
2052 6989 8.524487 ACATACTACTCTCTTCGTCTCAAAATT 58.476 33.333 0.00 0.00 0.00 1.82
2053 6990 8.057536 ACATACTACTCTCTTCGTCTCAAAAT 57.942 34.615 0.00 0.00 0.00 1.82
2054 6991 7.450124 ACATACTACTCTCTTCGTCTCAAAA 57.550 36.000 0.00 0.00 0.00 2.44
2055 6992 8.734218 ATACATACTACTCTCTTCGTCTCAAA 57.266 34.615 0.00 0.00 0.00 2.69
2056 6993 8.734218 AATACATACTACTCTCTTCGTCTCAA 57.266 34.615 0.00 0.00 0.00 3.02
2057 6994 9.828039 TTAATACATACTACTCTCTTCGTCTCA 57.172 33.333 0.00 0.00 0.00 3.27
2113 7083 7.987458 TCCAGCAATTCTAGTACTATTTCCTTG 59.013 37.037 2.33 5.09 0.00 3.61
2114 7084 8.090788 TCCAGCAATTCTAGTACTATTTCCTT 57.909 34.615 2.33 0.00 0.00 3.36
2125 7095 4.946157 CACCAAGAATCCAGCAATTCTAGT 59.054 41.667 8.79 7.46 43.53 2.57
2126 7096 4.201990 GCACCAAGAATCCAGCAATTCTAG 60.202 45.833 8.79 6.99 43.53 2.43
2135 7105 2.158986 AGATCTCGCACCAAGAATCCAG 60.159 50.000 0.00 0.00 0.00 3.86
2152 7122 3.005897 TCTGTATGAGCCGGCTTTAGATC 59.994 47.826 33.34 17.70 0.00 2.75
2155 7125 2.890808 TCTGTATGAGCCGGCTTTAG 57.109 50.000 33.34 22.38 0.00 1.85
2167 7137 5.380043 AGACCCATTGGCTATTTCTGTATG 58.620 41.667 0.00 0.00 33.59 2.39
2172 7142 2.746472 GCGAGACCCATTGGCTATTTCT 60.746 50.000 0.00 0.00 33.59 2.52
2254 7866 8.895737 TCGGGTGGAGAAAATATTGTTATAAAC 58.104 33.333 0.00 0.00 0.00 2.01
2270 7883 2.232941 GTCTTACATTGTCGGGTGGAGA 59.767 50.000 0.00 0.00 0.00 3.71
2285 7898 9.076596 CCTATTTAGCTTGCAAAAATGTCTTAC 57.923 33.333 14.89 0.00 0.00 2.34
2286 7899 8.250332 CCCTATTTAGCTTGCAAAAATGTCTTA 58.750 33.333 14.89 0.00 0.00 2.10
2287 7900 7.099120 CCCTATTTAGCTTGCAAAAATGTCTT 58.901 34.615 14.89 0.00 0.00 3.01
2288 7901 6.633856 CCCTATTTAGCTTGCAAAAATGTCT 58.366 36.000 14.89 2.96 0.00 3.41
2289 7902 5.291858 GCCCTATTTAGCTTGCAAAAATGTC 59.708 40.000 14.89 2.00 0.00 3.06
2290 7903 5.046376 AGCCCTATTTAGCTTGCAAAAATGT 60.046 36.000 14.89 0.00 35.22 2.71
2291 7904 5.422145 AGCCCTATTTAGCTTGCAAAAATG 58.578 37.500 14.89 7.33 35.22 2.32
2292 7905 5.682234 AGCCCTATTTAGCTTGCAAAAAT 57.318 34.783 11.29 11.29 35.22 1.82
2301 7914 4.618227 CGTTTTTGCAAGCCCTATTTAGCT 60.618 41.667 0.00 0.00 42.40 3.32
2302 7915 3.612423 CGTTTTTGCAAGCCCTATTTAGC 59.388 43.478 0.00 0.00 0.00 3.09
2303 7916 4.805219 ACGTTTTTGCAAGCCCTATTTAG 58.195 39.130 0.00 0.00 0.00 1.85
2304 7917 4.857509 ACGTTTTTGCAAGCCCTATTTA 57.142 36.364 0.00 0.00 0.00 1.40
2305 7918 3.744238 ACGTTTTTGCAAGCCCTATTT 57.256 38.095 0.00 0.00 0.00 1.40
2306 7919 3.744238 AACGTTTTTGCAAGCCCTATT 57.256 38.095 0.00 0.00 0.00 1.73
2307 7920 3.744238 AAACGTTTTTGCAAGCCCTAT 57.256 38.095 7.96 0.00 0.00 2.57
2308 7921 3.528597 AAAACGTTTTTGCAAGCCCTA 57.471 38.095 20.26 0.00 0.00 3.53
2309 7922 2.394930 AAAACGTTTTTGCAAGCCCT 57.605 40.000 20.26 0.00 0.00 5.19
2310 7923 2.930682 TGTAAAACGTTTTTGCAAGCCC 59.069 40.909 29.42 9.58 0.00 5.19
2311 7924 4.787381 ATGTAAAACGTTTTTGCAAGCC 57.213 36.364 29.42 10.76 0.00 4.35
2312 7925 6.021861 CCAAAATGTAAAACGTTTTTGCAAGC 60.022 34.615 29.42 13.94 42.72 4.01
2313 7926 6.467364 CCCAAAATGTAAAACGTTTTTGCAAG 59.533 34.615 29.42 17.81 42.72 4.01
2314 7927 6.148811 TCCCAAAATGTAAAACGTTTTTGCAA 59.851 30.769 29.42 10.56 42.72 4.08
2315 7928 5.642063 TCCCAAAATGTAAAACGTTTTTGCA 59.358 32.000 29.42 25.81 42.72 4.08
2316 7929 5.960683 GTCCCAAAATGTAAAACGTTTTTGC 59.039 36.000 29.42 21.80 42.72 3.68
2317 7930 6.479436 GGTCCCAAAATGTAAAACGTTTTTG 58.521 36.000 29.42 19.75 42.72 2.44
2318 7931 5.291371 CGGTCCCAAAATGTAAAACGTTTTT 59.709 36.000 29.42 10.93 42.72 1.94
2319 7932 4.804665 CGGTCCCAAAATGTAAAACGTTTT 59.195 37.500 27.65 27.65 45.25 2.43
2330 7943 0.328258 ACTCTCCCGGTCCCAAAATG 59.672 55.000 0.00 0.00 0.00 2.32
2341 7954 7.741027 TTACACTAAGTCATATACTCTCCCG 57.259 40.000 0.00 0.00 37.50 5.14
2349 7962 8.315391 ACGCGAGTATTACACTAAGTCATATA 57.685 34.615 15.93 0.00 46.88 0.86
2350 7963 7.199541 ACGCGAGTATTACACTAAGTCATAT 57.800 36.000 15.93 0.00 46.88 1.78
2382 7995 3.702045 CCCTCTAGAGTACCACCTTTCAG 59.298 52.174 18.42 0.00 0.00 3.02
2448 8102 5.184096 AGTTTCGCAGAAGAATGACTCTAGA 59.816 40.000 0.00 0.00 45.90 2.43
2450 8104 5.392767 AGTTTCGCAGAAGAATGACTCTA 57.607 39.130 0.00 0.00 45.90 2.43
2475 8129 2.621998 ACCTAGCATATTACTCGTGCGT 59.378 45.455 0.00 0.00 43.37 5.24
2476 8130 3.284323 ACCTAGCATATTACTCGTGCG 57.716 47.619 0.00 0.00 43.37 5.34
2582 8238 5.656859 CCCCCAAGATAAGAAAAAGGGTAAG 59.343 44.000 0.00 0.00 32.90 2.34
2599 8256 0.035458 GACAGTCAGTCACCCCCAAG 59.965 60.000 0.00 0.00 46.77 3.61
2667 8324 3.385111 ACTCATCCAGATCTACCGTTTCC 59.615 47.826 0.00 0.00 0.00 3.13
2672 8329 2.035193 CCACACTCATCCAGATCTACCG 59.965 54.545 0.00 0.00 0.00 4.02
2830 8581 7.540299 TCCGTTTGAAAATAAGTGACTTGTTT 58.460 30.769 13.29 13.29 36.59 2.83
2847 8598 7.369551 ACAATATTATACTCCCTCCGTTTGA 57.630 36.000 0.00 0.00 0.00 2.69
2849 8600 7.231317 TCGTACAATATTATACTCCCTCCGTTT 59.769 37.037 2.59 0.00 0.00 3.60
2896 8658 5.055642 CATCAATGTGATGCTCAGTTTGT 57.944 39.130 5.36 0.00 46.37 2.83
2945 8708 5.185454 TCAGACACACACTTTTCTGACATT 58.815 37.500 0.00 0.00 39.62 2.71
2952 8715 4.572389 ACACTGATCAGACACACACTTTTC 59.428 41.667 29.27 0.00 0.00 2.29
2984 8773 7.173562 AGAGTACTACTAAGTTCACACAGTCAG 59.826 40.741 0.00 0.00 37.15 3.51
2997 8786 6.108015 AGTGAACGGAGAGAGTACTACTAAG 58.892 44.000 0.00 0.00 0.00 2.18
3239 9338 1.004292 CGGTGTTGAAGAACGAACCAC 60.004 52.381 0.00 0.00 34.49 4.16
3240 9339 1.292061 CGGTGTTGAAGAACGAACCA 58.708 50.000 0.00 0.00 34.49 3.67
3241 9340 0.584876 CCGGTGTTGAAGAACGAACC 59.415 55.000 0.00 0.00 34.49 3.62
3242 9341 0.041576 GCCGGTGTTGAAGAACGAAC 60.042 55.000 0.00 0.00 34.49 3.95
3243 9342 1.492319 CGCCGGTGTTGAAGAACGAA 61.492 55.000 6.91 0.00 34.49 3.85
3244 9343 1.952133 CGCCGGTGTTGAAGAACGA 60.952 57.895 6.91 0.00 34.49 3.85
3245 9344 2.549282 CGCCGGTGTTGAAGAACG 59.451 61.111 6.91 0.00 34.49 3.95
3246 9345 0.600782 TACCGCCGGTGTTGAAGAAC 60.601 55.000 21.20 0.00 36.19 3.01
3247 9346 0.322322 ATACCGCCGGTGTTGAAGAA 59.678 50.000 21.20 0.00 36.19 2.52
3248 9347 0.108520 GATACCGCCGGTGTTGAAGA 60.109 55.000 21.20 0.00 36.19 2.87
3249 9348 0.108329 AGATACCGCCGGTGTTGAAG 60.108 55.000 21.20 0.00 36.19 3.02
3250 9349 0.108520 GAGATACCGCCGGTGTTGAA 60.109 55.000 21.20 0.00 36.19 2.69
3251 9350 0.968901 AGAGATACCGCCGGTGTTGA 60.969 55.000 21.20 0.00 36.19 3.18
3252 9351 0.527817 GAGAGATACCGCCGGTGTTG 60.528 60.000 21.20 1.49 36.19 3.33
3253 9352 1.814527 GAGAGATACCGCCGGTGTT 59.185 57.895 21.20 6.09 36.19 3.32
3254 9353 2.478890 CGAGAGATACCGCCGGTGT 61.479 63.158 21.20 13.49 36.19 4.16
3255 9354 2.119147 CTCGAGAGATACCGCCGGTG 62.119 65.000 21.20 8.42 40.84 4.94
3256 9355 1.892862 CTCGAGAGATACCGCCGGT 60.893 63.158 15.63 15.63 40.84 5.28
3257 9356 2.618219 CCTCGAGAGATACCGCCGG 61.618 68.421 15.71 0.00 40.84 6.13
3258 9357 2.947542 CCTCGAGAGATACCGCCG 59.052 66.667 15.71 0.00 40.84 6.46
3259 9358 2.646143 GCCTCGAGAGATACCGCC 59.354 66.667 15.71 0.00 40.84 6.13
3260 9359 2.646143 GGCCTCGAGAGATACCGC 59.354 66.667 15.71 6.51 40.84 5.68
3261 9360 2.269529 GGGGCCTCGAGAGATACCG 61.270 68.421 15.71 0.00 40.84 4.02
3262 9361 0.896479 GAGGGGCCTCGAGAGATACC 60.896 65.000 15.71 8.63 40.84 2.73
3263 9362 0.111639 AGAGGGGCCTCGAGAGATAC 59.888 60.000 15.71 0.00 46.90 2.24
3264 9363 0.402504 GAGAGGGGCCTCGAGAGATA 59.597 60.000 15.71 0.00 46.90 1.98
3265 9364 1.152830 GAGAGGGGCCTCGAGAGAT 59.847 63.158 15.71 0.00 46.90 2.75
3266 9365 1.990160 GAGAGAGGGGCCTCGAGAGA 61.990 65.000 15.71 0.00 46.90 3.10
3267 9366 1.528309 GAGAGAGGGGCCTCGAGAG 60.528 68.421 15.71 5.19 46.90 3.20
3268 9367 2.598467 GAGAGAGGGGCCTCGAGA 59.402 66.667 15.71 0.00 46.90 4.04
3269 9368 2.520741 GGAGAGAGGGGCCTCGAG 60.521 72.222 5.13 5.13 46.90 4.04
3270 9369 4.144727 GGGAGAGAGGGGCCTCGA 62.145 72.222 0.84 0.00 46.90 4.04
3272 9371 4.467107 ACGGGAGAGAGGGGCCTC 62.467 72.222 0.84 0.00 43.03 4.70
3273 9372 4.467107 GACGGGAGAGAGGGGCCT 62.467 72.222 0.84 0.00 0.00 5.19
3279 9378 3.878519 GTCGCGGACGGGAGAGAG 61.879 72.222 11.80 0.00 40.63 3.20
3431 9532 1.947041 CCTAGAGGGGGAAGGGCTA 59.053 63.158 0.00 0.00 0.00 3.93
3443 9544 1.437986 CGCCGGAGAAACCCTAGAG 59.562 63.158 5.05 0.00 34.64 2.43
4531 10636 2.515071 GCATGCCAAACCCCACCAA 61.515 57.895 6.36 0.00 0.00 3.67
4874 10984 5.062528 TCAAAGTACACATCACAATGCTGA 58.937 37.500 0.00 0.00 36.26 4.26
4929 11040 6.482973 ACGTTGAATAGTTTACCGAAAAAGGA 59.517 34.615 0.00 0.00 34.73 3.36
5072 11183 0.853530 AAAGGGAAGGACAACTGCCT 59.146 50.000 0.00 0.00 45.35 4.75
5076 11187 8.971073 CATATATTTGAAAAGGGAAGGACAACT 58.029 33.333 0.00 0.00 0.00 3.16
5126 11237 3.570550 TGTGGCATGGTTACCTAAAACAC 59.429 43.478 2.07 6.43 37.69 3.32
5127 11238 3.833732 TGTGGCATGGTTACCTAAAACA 58.166 40.909 2.07 0.00 39.69 2.83
5156 11267 4.578928 TCTGCACCTTTTTCTTAGTTGTCC 59.421 41.667 0.00 0.00 0.00 4.02
5205 11316 4.325974 GGGGACGGAGGGAGTATTATCTAT 60.326 50.000 0.00 0.00 0.00 1.98
5206 11317 3.011032 GGGGACGGAGGGAGTATTATCTA 59.989 52.174 0.00 0.00 0.00 1.98
5207 11318 2.225318 GGGGACGGAGGGAGTATTATCT 60.225 54.545 0.00 0.00 0.00 1.98
5208 11319 2.177734 GGGGACGGAGGGAGTATTATC 58.822 57.143 0.00 0.00 0.00 1.75
5209 11320 1.506418 TGGGGACGGAGGGAGTATTAT 59.494 52.381 0.00 0.00 0.00 1.28
5210 11321 0.935942 TGGGGACGGAGGGAGTATTA 59.064 55.000 0.00 0.00 0.00 0.98
5211 11322 0.043637 TTGGGGACGGAGGGAGTATT 59.956 55.000 0.00 0.00 0.00 1.89
5213 11324 0.043637 ATTTGGGGACGGAGGGAGTA 59.956 55.000 0.00 0.00 0.00 2.59
5214 11325 0.845102 AATTTGGGGACGGAGGGAGT 60.845 55.000 0.00 0.00 0.00 3.85
5215 11326 0.107165 GAATTTGGGGACGGAGGGAG 60.107 60.000 0.00 0.00 0.00 4.30
5216 11327 0.549169 AGAATTTGGGGACGGAGGGA 60.549 55.000 0.00 0.00 0.00 4.20
5217 11328 0.331616 AAGAATTTGGGGACGGAGGG 59.668 55.000 0.00 0.00 0.00 4.30
5218 11329 1.271926 ACAAGAATTTGGGGACGGAGG 60.272 52.381 0.00 0.00 38.66 4.30
5219 11330 2.084546 GACAAGAATTTGGGGACGGAG 58.915 52.381 0.00 0.00 38.66 4.63
5220 11331 1.702957 AGACAAGAATTTGGGGACGGA 59.297 47.619 0.00 0.00 38.66 4.69
5221 11332 2.200373 AGACAAGAATTTGGGGACGG 57.800 50.000 0.00 0.00 38.66 4.79
5222 11333 4.575885 TCTAAGACAAGAATTTGGGGACG 58.424 43.478 0.00 0.00 38.66 4.79
5223 11334 7.039714 ACAAATCTAAGACAAGAATTTGGGGAC 60.040 37.037 9.98 0.00 38.66 4.46
5224 11335 7.010160 ACAAATCTAAGACAAGAATTTGGGGA 58.990 34.615 9.98 0.00 38.66 4.81
5225 11336 7.092716 CACAAATCTAAGACAAGAATTTGGGG 58.907 38.462 9.98 0.49 38.66 4.96
5226 11337 7.661040 ACACAAATCTAAGACAAGAATTTGGG 58.339 34.615 6.79 6.79 38.66 4.12
5227 11338 9.831737 CTACACAAATCTAAGACAAGAATTTGG 57.168 33.333 9.98 3.41 38.66 3.28
5232 11343 9.569167 CGTATCTACACAAATCTAAGACAAGAA 57.431 33.333 0.00 0.00 0.00 2.52
5233 11344 8.188799 CCGTATCTACACAAATCTAAGACAAGA 58.811 37.037 0.00 0.00 0.00 3.02
5234 11345 8.188799 TCCGTATCTACACAAATCTAAGACAAG 58.811 37.037 0.00 0.00 0.00 3.16
5235 11346 8.058667 TCCGTATCTACACAAATCTAAGACAA 57.941 34.615 0.00 0.00 0.00 3.18
5236 11347 7.634671 TCCGTATCTACACAAATCTAAGACA 57.365 36.000 0.00 0.00 0.00 3.41
5237 11348 8.136165 ACATCCGTATCTACACAAATCTAAGAC 58.864 37.037 0.00 0.00 0.00 3.01
5238 11349 8.234136 ACATCCGTATCTACACAAATCTAAGA 57.766 34.615 0.00 0.00 0.00 2.10
5267 11378 9.520204 GGCGTATCTAGTTACATTTTAGTGTTA 57.480 33.333 10.76 0.00 33.62 2.41
5268 11379 7.493645 GGGCGTATCTAGTTACATTTTAGTGTT 59.506 37.037 10.76 0.00 33.62 3.32
5269 11380 6.982724 GGGCGTATCTAGTTACATTTTAGTGT 59.017 38.462 10.76 0.00 36.13 3.55
5270 11381 6.143438 CGGGCGTATCTAGTTACATTTTAGTG 59.857 42.308 10.76 0.00 0.00 2.74
5271 11382 6.183360 ACGGGCGTATCTAGTTACATTTTAGT 60.183 38.462 10.76 1.66 0.00 2.24
5272 11383 6.211515 ACGGGCGTATCTAGTTACATTTTAG 58.788 40.000 10.76 1.18 0.00 1.85
5273 11384 6.147864 ACGGGCGTATCTAGTTACATTTTA 57.852 37.500 10.76 0.00 0.00 1.52
5274 11385 5.014808 ACGGGCGTATCTAGTTACATTTT 57.985 39.130 10.76 0.00 0.00 1.82
5275 11386 4.660789 ACGGGCGTATCTAGTTACATTT 57.339 40.909 10.76 0.00 0.00 2.32
5276 11387 5.972107 ATACGGGCGTATCTAGTTACATT 57.028 39.130 10.76 0.00 36.69 2.71
5277 11388 5.972107 AATACGGGCGTATCTAGTTACAT 57.028 39.130 10.76 0.00 40.08 2.29
5278 11389 5.772825 AAATACGGGCGTATCTAGTTACA 57.227 39.130 10.76 0.00 40.08 2.41
5279 11390 7.018235 GTCTAAATACGGGCGTATCTAGTTAC 58.982 42.308 0.00 1.44 40.08 2.50
5280 11391 6.710295 TGTCTAAATACGGGCGTATCTAGTTA 59.290 38.462 0.00 0.00 40.08 2.24
5281 11392 5.532406 TGTCTAAATACGGGCGTATCTAGTT 59.468 40.000 0.00 0.00 40.08 2.24
5282 11393 5.065914 TGTCTAAATACGGGCGTATCTAGT 58.934 41.667 0.00 0.00 40.08 2.57
5283 11394 5.618056 TGTCTAAATACGGGCGTATCTAG 57.382 43.478 0.00 0.00 40.08 2.43
5284 11395 6.389830 TTTGTCTAAATACGGGCGTATCTA 57.610 37.500 0.00 0.00 40.08 1.98
5285 11396 4.924305 TTGTCTAAATACGGGCGTATCT 57.076 40.909 0.00 0.00 40.08 1.98
5286 11397 5.924825 AGATTTGTCTAAATACGGGCGTATC 59.075 40.000 0.00 0.00 40.08 2.24
5287 11398 5.850614 AGATTTGTCTAAATACGGGCGTAT 58.149 37.500 0.00 0.00 42.48 3.06
5288 11399 5.266733 AGATTTGTCTAAATACGGGCGTA 57.733 39.130 0.00 0.00 36.66 4.42
5289 11400 4.133013 AGATTTGTCTAAATACGGGCGT 57.867 40.909 0.00 0.00 36.66 5.68
5290 11401 5.981315 TCTTAGATTTGTCTAAATACGGGCG 59.019 40.000 0.26 0.00 36.66 6.13
5291 11402 6.759827 TGTCTTAGATTTGTCTAAATACGGGC 59.240 38.462 0.26 0.00 36.66 6.13
5292 11403 8.712285 TTGTCTTAGATTTGTCTAAATACGGG 57.288 34.615 0.26 0.00 36.66 5.28
5301 11412 9.546428 CCCAAAATTTTTGTCTTAGATTTGTCT 57.454 29.630 18.05 0.00 0.00 3.41
5302 11413 9.541143 TCCCAAAATTTTTGTCTTAGATTTGTC 57.459 29.630 18.05 0.00 0.00 3.18
5303 11414 9.325198 GTCCCAAAATTTTTGTCTTAGATTTGT 57.675 29.630 18.05 0.00 0.00 2.83
5304 11415 8.487176 CGTCCCAAAATTTTTGTCTTAGATTTG 58.513 33.333 18.05 2.04 0.00 2.32
5305 11416 7.655732 CCGTCCCAAAATTTTTGTCTTAGATTT 59.344 33.333 18.05 0.00 0.00 2.17
5306 11417 7.014808 TCCGTCCCAAAATTTTTGTCTTAGATT 59.985 33.333 18.05 0.00 0.00 2.40
5307 11418 6.492087 TCCGTCCCAAAATTTTTGTCTTAGAT 59.508 34.615 18.05 0.00 0.00 1.98
5308 11419 5.828859 TCCGTCCCAAAATTTTTGTCTTAGA 59.171 36.000 18.05 8.44 0.00 2.10
5309 11420 6.079424 TCCGTCCCAAAATTTTTGTCTTAG 57.921 37.500 18.05 5.02 0.00 2.18
5310 11421 5.010213 CCTCCGTCCCAAAATTTTTGTCTTA 59.990 40.000 18.05 1.26 0.00 2.10
5311 11422 4.202212 CCTCCGTCCCAAAATTTTTGTCTT 60.202 41.667 18.05 0.00 0.00 3.01
5312 11423 3.320826 CCTCCGTCCCAAAATTTTTGTCT 59.679 43.478 18.05 0.00 0.00 3.41
5313 11424 3.554129 CCCTCCGTCCCAAAATTTTTGTC 60.554 47.826 18.05 9.04 0.00 3.18
5314 11425 2.367241 CCCTCCGTCCCAAAATTTTTGT 59.633 45.455 18.05 0.00 0.00 2.83
5315 11426 2.630580 TCCCTCCGTCCCAAAATTTTTG 59.369 45.455 13.76 13.76 0.00 2.44
5316 11427 2.897326 CTCCCTCCGTCCCAAAATTTTT 59.103 45.455 0.00 0.00 0.00 1.94
5317 11428 2.158370 ACTCCCTCCGTCCCAAAATTTT 60.158 45.455 0.00 0.00 0.00 1.82
5318 11429 1.427753 ACTCCCTCCGTCCCAAAATTT 59.572 47.619 0.00 0.00 0.00 1.82
5319 11430 1.073098 ACTCCCTCCGTCCCAAAATT 58.927 50.000 0.00 0.00 0.00 1.82
5320 11431 1.558294 GTACTCCCTCCGTCCCAAAAT 59.442 52.381 0.00 0.00 0.00 1.82
5321 11432 0.978907 GTACTCCCTCCGTCCCAAAA 59.021 55.000 0.00 0.00 0.00 2.44
5322 11433 0.178926 TGTACTCCCTCCGTCCCAAA 60.179 55.000 0.00 0.00 0.00 3.28
5323 11434 0.042131 ATGTACTCCCTCCGTCCCAA 59.958 55.000 0.00 0.00 0.00 4.12
5324 11435 0.928505 TATGTACTCCCTCCGTCCCA 59.071 55.000 0.00 0.00 0.00 4.37
5325 11436 2.077687 TTATGTACTCCCTCCGTCCC 57.922 55.000 0.00 0.00 0.00 4.46
5326 11437 3.387050 ACAATTATGTACTCCCTCCGTCC 59.613 47.826 0.00 0.00 38.24 4.79
5327 11438 4.369182 CACAATTATGTACTCCCTCCGTC 58.631 47.826 0.00 0.00 37.82 4.79
5328 11439 3.431766 GCACAATTATGTACTCCCTCCGT 60.432 47.826 0.00 0.00 37.82 4.69
5329 11440 3.131396 GCACAATTATGTACTCCCTCCG 58.869 50.000 0.00 0.00 37.82 4.63
5330 11441 4.150897 TGCACAATTATGTACTCCCTCC 57.849 45.455 0.00 0.00 37.82 4.30
5331 11442 6.699575 AATTGCACAATTATGTACTCCCTC 57.300 37.500 6.82 0.00 39.08 4.30
5332 11443 7.480760 AAAATTGCACAATTATGTACTCCCT 57.519 32.000 8.92 0.00 39.88 4.20
5450 11561 6.803807 GGACTGAAATAAGTGAAGAAACATGC 59.196 38.462 0.00 0.00 0.00 4.06
5452 11563 6.710744 ACGGACTGAAATAAGTGAAGAAACAT 59.289 34.615 0.00 0.00 0.00 2.71
5508 11619 4.225267 ACTCCCTCCGTTCACTATTTCAAT 59.775 41.667 0.00 0.00 0.00 2.57
5512 11623 5.952347 AATACTCCCTCCGTTCACTATTT 57.048 39.130 0.00 0.00 0.00 1.40
5536 11647 6.094186 GGTATCAAAAGTCTCCCTGCTAAAAG 59.906 42.308 0.00 0.00 0.00 2.27
5550 11661 6.099341 GCATTCCATTTTCGGTATCAAAAGT 58.901 36.000 0.00 0.00 0.00 2.66
5551 11662 6.034898 GTGCATTCCATTTTCGGTATCAAAAG 59.965 38.462 0.00 0.00 0.00 2.27
5555 11666 3.380004 GGTGCATTCCATTTTCGGTATCA 59.620 43.478 0.00 0.00 0.00 2.15
5677 13079 8.160765 TCCCTCTGTTTGAAATTACTTATCACA 58.839 33.333 0.00 0.00 0.00 3.58
5678 13080 8.561738 TCCCTCTGTTTGAAATTACTTATCAC 57.438 34.615 0.00 0.00 0.00 3.06
5679 13081 8.383175 ACTCCCTCTGTTTGAAATTACTTATCA 58.617 33.333 0.00 0.00 0.00 2.15
5680 13082 8.794335 ACTCCCTCTGTTTGAAATTACTTATC 57.206 34.615 0.00 0.00 0.00 1.75
5682 13084 9.667107 CATACTCCCTCTGTTTGAAATTACTTA 57.333 33.333 0.00 0.00 0.00 2.24
5683 13085 8.164070 ACATACTCCCTCTGTTTGAAATTACTT 58.836 33.333 0.00 0.00 0.00 2.24
5684 13086 7.690256 ACATACTCCCTCTGTTTGAAATTACT 58.310 34.615 0.00 0.00 0.00 2.24
5685 13087 7.923414 ACATACTCCCTCTGTTTGAAATTAC 57.077 36.000 0.00 0.00 0.00 1.89
5688 13090 7.839680 AAAACATACTCCCTCTGTTTGAAAT 57.160 32.000 1.12 0.00 41.03 2.17
5689 13091 8.934023 ATAAAACATACTCCCTCTGTTTGAAA 57.066 30.769 1.12 0.00 41.03 2.69
5691 13093 8.934023 AAATAAAACATACTCCCTCTGTTTGA 57.066 30.769 1.12 0.00 41.03 2.69
5692 13094 9.981114 AAAAATAAAACATACTCCCTCTGTTTG 57.019 29.630 1.12 0.00 41.03 2.93
5735 13137 7.836842 AGCATATGGTTTCCGATTTTTAACTT 58.163 30.769 0.40 0.00 0.00 2.66
5751 13257 5.841237 AGTATGTAGACTGGAAGCATATGGT 59.159 40.000 0.40 0.40 37.60 3.55
5785 14595 7.067008 GGCCTGTTGTTTGCTCTTATATTTCTA 59.933 37.037 0.00 0.00 0.00 2.10
5806 14641 0.899720 ATGTTTTGAGCATGGGCCTG 59.100 50.000 4.53 1.41 42.56 4.85
5808 14643 3.608316 TTTATGTTTTGAGCATGGGCC 57.392 42.857 0.00 0.00 42.56 5.80
5840 14677 1.621107 GTGCCGTCTGAATTTGCATG 58.379 50.000 0.00 0.00 34.04 4.06
5842 14679 1.573932 CGTGCCGTCTGAATTTGCA 59.426 52.632 0.00 0.00 0.00 4.08
5854 14691 3.248630 ATTGTCGTTTGCCGTGCCG 62.249 57.895 0.00 0.00 37.94 5.69
5903 14740 8.589701 TGTAGACTGACAATACTCAAATAGGA 57.410 34.615 0.00 0.00 0.00 2.94
6003 14991 7.008021 TCAGCCATGTCAAAGCAGATATATA 57.992 36.000 0.00 0.00 0.00 0.86
6004 14992 5.872963 TCAGCCATGTCAAAGCAGATATAT 58.127 37.500 0.00 0.00 0.00 0.86
6005 14993 5.294734 TCAGCCATGTCAAAGCAGATATA 57.705 39.130 0.00 0.00 0.00 0.86
6006 14994 4.160642 TCAGCCATGTCAAAGCAGATAT 57.839 40.909 0.00 0.00 0.00 1.63
6631 15619 3.653078 TTGGCGTCCCCGGGATTT 61.653 61.111 26.32 0.00 32.73 2.17
7240 16237 4.017877 GCGCTGCTGAGCACGTTT 62.018 61.111 22.91 0.00 46.62 3.60
7468 16468 1.134280 GCTGGCTCTGAATGAAGCCTA 60.134 52.381 13.99 1.17 46.77 3.93
7600 16600 5.657470 TTCAGTAATGAGTATTGCATCGC 57.343 39.130 0.00 0.00 32.09 4.58
7601 16601 7.005958 CGATTTCAGTAATGAGTATTGCATCG 58.994 38.462 0.00 3.79 31.88 3.84
7602 16602 7.855545 ACGATTTCAGTAATGAGTATTGCATC 58.144 34.615 0.00 0.00 32.09 3.91
7603 16603 7.495606 TGACGATTTCAGTAATGAGTATTGCAT 59.504 33.333 0.00 0.00 32.09 3.96
7604 16604 6.816140 TGACGATTTCAGTAATGAGTATTGCA 59.184 34.615 0.00 0.00 32.09 4.08
7605 16605 7.234187 TGACGATTTCAGTAATGAGTATTGC 57.766 36.000 0.00 0.00 0.00 3.56
7606 16606 8.820933 ACATGACGATTTCAGTAATGAGTATTG 58.179 33.333 0.00 0.00 37.77 1.90
7607 16607 8.948631 ACATGACGATTTCAGTAATGAGTATT 57.051 30.769 0.00 0.00 37.77 1.89
7609 16609 9.678941 GATACATGACGATTTCAGTAATGAGTA 57.321 33.333 0.00 0.00 37.77 2.59
7610 16610 8.417106 AGATACATGACGATTTCAGTAATGAGT 58.583 33.333 0.00 0.00 37.77 3.41
7611 16611 8.809159 AGATACATGACGATTTCAGTAATGAG 57.191 34.615 0.00 0.00 37.77 2.90
7612 16612 8.413229 TGAGATACATGACGATTTCAGTAATGA 58.587 33.333 0.00 0.00 37.77 2.57
7613 16613 8.579682 TGAGATACATGACGATTTCAGTAATG 57.420 34.615 0.00 0.00 37.77 1.90
7614 16614 9.599866 TTTGAGATACATGACGATTTCAGTAAT 57.400 29.630 0.00 0.00 37.77 1.89
7615 16615 8.996024 TTTGAGATACATGACGATTTCAGTAA 57.004 30.769 0.00 0.00 37.77 2.24
7617 16617 9.599866 TTATTTGAGATACATGACGATTTCAGT 57.400 29.630 0.00 0.00 37.77 3.41
7624 16624 9.914131 CCTTCTATTATTTGAGATACATGACGA 57.086 33.333 0.00 0.00 0.00 4.20
7625 16625 9.144747 CCCTTCTATTATTTGAGATACATGACG 57.855 37.037 0.00 0.00 0.00 4.35
7626 16626 8.940952 GCCCTTCTATTATTTGAGATACATGAC 58.059 37.037 0.00 0.00 0.00 3.06
7627 16627 7.819415 CGCCCTTCTATTATTTGAGATACATGA 59.181 37.037 0.00 0.00 0.00 3.07
7628 16628 7.065085 CCGCCCTTCTATTATTTGAGATACATG 59.935 40.741 0.00 0.00 0.00 3.21
7629 16629 7.106239 CCGCCCTTCTATTATTTGAGATACAT 58.894 38.462 0.00 0.00 0.00 2.29
7630 16630 6.464222 CCGCCCTTCTATTATTTGAGATACA 58.536 40.000 0.00 0.00 0.00 2.29
7631 16631 5.351740 GCCGCCCTTCTATTATTTGAGATAC 59.648 44.000 0.00 0.00 0.00 2.24
7632 16632 5.488341 GCCGCCCTTCTATTATTTGAGATA 58.512 41.667 0.00 0.00 0.00 1.98
7633 16633 4.327680 GCCGCCCTTCTATTATTTGAGAT 58.672 43.478 0.00 0.00 0.00 2.75
7634 16634 3.496160 GGCCGCCCTTCTATTATTTGAGA 60.496 47.826 0.00 0.00 0.00 3.27
7635 16635 2.814336 GGCCGCCCTTCTATTATTTGAG 59.186 50.000 0.00 0.00 0.00 3.02
7636 16636 2.488347 GGGCCGCCCTTCTATTATTTGA 60.488 50.000 22.31 0.00 41.34 2.69
7637 16637 1.886542 GGGCCGCCCTTCTATTATTTG 59.113 52.381 22.31 0.00 41.34 2.32
7638 16638 1.544759 CGGGCCGCCCTTCTATTATTT 60.545 52.381 26.29 0.00 42.67 1.40
7639 16639 0.036306 CGGGCCGCCCTTCTATTATT 59.964 55.000 26.29 0.00 42.67 1.40
7640 16640 0.834687 TCGGGCCGCCCTTCTATTAT 60.835 55.000 26.29 0.00 42.67 1.28
7641 16641 1.458020 TCGGGCCGCCCTTCTATTA 60.458 57.895 26.29 0.00 42.67 0.98
7642 16642 2.766651 TCGGGCCGCCCTTCTATT 60.767 61.111 26.29 0.00 42.67 1.73
7643 16643 3.234730 CTCGGGCCGCCCTTCTAT 61.235 66.667 26.29 0.00 42.67 1.98
7774 16775 1.489481 AGCCAGAACGAGATGGATGA 58.511 50.000 8.40 0.00 39.02 2.92
7805 16806 1.834822 GCGCTCCTCTAGTCCCCAT 60.835 63.158 0.00 0.00 0.00 4.00
7891 16892 3.869272 GACATTGCAGAGCCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
7896 16897 2.699809 CTCGCGACATTGCAGAGC 59.300 61.111 3.71 0.00 32.12 4.09
7899 16900 2.743752 CCACCTCGCGACATTGCAG 61.744 63.158 3.71 0.00 34.15 4.41
7900 16901 2.741985 CCACCTCGCGACATTGCA 60.742 61.111 3.71 0.00 34.15 4.08
7902 16903 1.626654 GACACCACCTCGCGACATTG 61.627 60.000 3.71 1.85 0.00 2.82
7903 16904 1.374252 GACACCACCTCGCGACATT 60.374 57.895 3.71 0.00 0.00 2.71
7904 16905 2.261671 GACACCACCTCGCGACAT 59.738 61.111 3.71 0.00 0.00 3.06
7905 16906 2.910479 AGACACCACCTCGCGACA 60.910 61.111 3.71 0.00 0.00 4.35
7920 16921 2.357034 GGGCAGTTCGAACGCAGA 60.357 61.111 31.09 0.00 32.69 4.26
7979 16980 3.863407 GGAGTCCGAAGCCAAGATT 57.137 52.632 0.00 0.00 0.00 2.40
8050 17083 3.449377 GGAAAGGAGGATCGAGAAGAACT 59.551 47.826 0.00 0.00 34.37 3.01
8118 17152 1.003839 GATCCGGTGACAAGCCACA 60.004 57.895 0.00 0.00 38.74 4.17
8129 17163 4.162690 GCCTGCTTCGGATCCGGT 62.163 66.667 32.79 0.00 40.25 5.28
8147 17181 1.524621 CCTATGCCACCAAGCCTCG 60.525 63.158 0.00 0.00 0.00 4.63
8152 17186 0.178981 CCCCATCCTATGCCACCAAG 60.179 60.000 0.00 0.00 0.00 3.61
8176 17210 3.701664 CCTAGCCATCCAAAGTTTCCTT 58.298 45.455 0.00 0.00 0.00 3.36
8477 17512 1.330521 CCGCCAAAACATCGACATAGG 59.669 52.381 0.00 0.00 0.00 2.57
8479 17514 0.730265 GCCGCCAAAACATCGACATA 59.270 50.000 0.00 0.00 0.00 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.