Multiple sequence alignment - TraesCS1B01G167900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G167900 chr1B 100.000 3527 0 0 1 3527 297102952 297099426 0.000000e+00 6514.0
1 TraesCS1B01G167900 chr1A 92.892 1871 82 20 884 2749 257566556 257564732 0.000000e+00 2671.0
2 TraesCS1B01G167900 chr1A 90.924 628 29 15 2927 3527 257559112 257558486 0.000000e+00 819.0
3 TraesCS1B01G167900 chr1A 81.174 494 72 10 292 766 257567511 257567020 9.240000e-101 377.0
4 TraesCS1B01G167900 chr1A 93.627 204 11 2 2741 2942 257559367 257559164 1.590000e-78 303.0
5 TraesCS1B01G167900 chr1D 92.921 777 39 8 2177 2942 203294140 203293369 0.000000e+00 1116.0
6 TraesCS1B01G167900 chr1D 87.805 738 25 18 986 1695 203311539 203310839 0.000000e+00 804.0
7 TraesCS1B01G167900 chr1D 83.846 780 110 9 2 766 203314129 203313351 0.000000e+00 728.0
8 TraesCS1B01G167900 chr1D 96.330 218 7 1 3311 3527 203292965 203292748 1.200000e-94 357.0
9 TraesCS1B01G167900 chr1D 91.322 242 10 4 2927 3160 203293317 203293079 1.580000e-83 320.0
10 TraesCS1B01G167900 chr1D 95.238 105 5 0 3145 3249 203293065 203292961 2.180000e-37 167.0
11 TraesCS1B01G167900 chr1D 95.699 93 4 0 913 1005 203313159 203313067 2.190000e-32 150.0
12 TraesCS1B01G167900 chr7B 84.158 101 16 0 528 628 319591373 319591473 8.060000e-17 99.0
13 TraesCS1B01G167900 chr5A 89.552 67 7 0 3258 3324 374902312 374902378 6.270000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G167900 chr1B 297099426 297102952 3526 True 6514.000000 6514 100.000000 1 3527 1 chr1B.!!$R1 3526
1 TraesCS1B01G167900 chr1A 257564732 257567511 2779 True 1524.000000 2671 87.033000 292 2749 2 chr1A.!!$R2 2457
2 TraesCS1B01G167900 chr1A 257558486 257559367 881 True 561.000000 819 92.275500 2741 3527 2 chr1A.!!$R1 786
3 TraesCS1B01G167900 chr1D 203310839 203314129 3290 True 560.666667 804 89.116667 2 1695 3 chr1D.!!$R2 1693
4 TraesCS1B01G167900 chr1D 203292748 203294140 1392 True 490.000000 1116 93.952750 2177 3527 4 chr1D.!!$R1 1350

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
414 417 0.034198 TGAATCACGGAGGTGCGAAA 59.966 50.0 0.0 0.0 44.03 3.46 F
584 604 0.102481 CGTCGGATCTCGTGGGATTT 59.898 55.0 0.0 0.0 40.32 2.17 F
697 717 0.389426 GACGGTTGGTGTAGCACGAT 60.389 55.0 0.0 0.0 34.83 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 3649 1.207089 TGGAGAGTGCCTGGATTAACG 59.793 52.381 0.00 0.0 0.00 3.18 R
2442 4394 0.467290 GGTTTTGTGCCTCCTGGTCA 60.467 55.000 0.00 0.0 35.27 4.02 R
2684 4645 1.422531 AAGATAGAGCCCAGGCAGAG 58.577 55.000 12.03 0.0 44.88 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.218974 GTGGGGAGAGGTCCGATTA 57.781 57.895 0.00 0.00 45.05 1.75
20 21 1.619332 GTGGGGAGAGGTCCGATTATC 59.381 57.143 0.00 0.00 45.05 1.75
29 30 2.826725 AGGTCCGATTATCCGAGAATCC 59.173 50.000 9.61 0.00 30.83 3.01
30 31 2.561419 GGTCCGATTATCCGAGAATCCA 59.439 50.000 9.61 0.00 30.83 3.41
32 33 3.005472 GTCCGATTATCCGAGAATCCACA 59.995 47.826 9.61 0.00 30.83 4.17
49 51 2.558359 CCACAAAAGAACTGGCCCTAAG 59.442 50.000 0.00 0.00 0.00 2.18
58 60 2.192263 ACTGGCCCTAAGAGGAGAAAG 58.808 52.381 0.00 0.00 37.67 2.62
61 63 2.840651 TGGCCCTAAGAGGAGAAAGAAG 59.159 50.000 0.00 0.00 37.67 2.85
74 76 6.463360 AGGAGAAAGAAGAGTTTGATGACTC 58.537 40.000 0.00 0.00 45.05 3.36
98 100 3.232213 ACGAAACGATGCTAGACACAT 57.768 42.857 0.00 0.00 0.00 3.21
99 101 2.923655 ACGAAACGATGCTAGACACATG 59.076 45.455 0.00 0.00 0.00 3.21
109 111 2.693591 GCTAGACACATGTACCTAGGCA 59.306 50.000 23.82 0.00 31.69 4.75
110 112 3.132289 GCTAGACACATGTACCTAGGCAA 59.868 47.826 23.82 0.00 31.69 4.52
127 129 5.695851 AGGCAAGAACACAATTTAGAGTG 57.304 39.130 0.00 0.00 41.40 3.51
236 238 4.336433 ACTTAGCGCATCATTTAAGCACAT 59.664 37.500 11.47 0.00 0.00 3.21
238 240 6.205464 ACTTAGCGCATCATTTAAGCACATAT 59.795 34.615 11.47 0.00 0.00 1.78
263 266 4.390129 TTGGGTGAGGCCTTAACATTTA 57.610 40.909 15.47 0.00 37.43 1.40
268 271 5.193679 GGTGAGGCCTTAACATTTAGACAT 58.806 41.667 6.77 0.00 0.00 3.06
269 272 5.066505 GGTGAGGCCTTAACATTTAGACATG 59.933 44.000 6.77 0.00 0.00 3.21
278 281 7.326789 CCTTAACATTTAGACATGCACAAGTTG 59.673 37.037 0.00 0.00 0.00 3.16
286 289 2.292569 ACATGCACAAGTTGAGAAGCTG 59.707 45.455 10.54 9.85 0.00 4.24
332 335 1.405661 CCCAAGAAGTAACTCCGAGGC 60.406 57.143 0.00 0.00 0.00 4.70
352 355 2.170817 GCGACTAGGATTTTCCCTCCTT 59.829 50.000 0.00 0.00 40.29 3.36
357 360 1.560146 AGGATTTTCCCTCCTTCCGTC 59.440 52.381 0.00 0.00 40.29 4.79
361 364 3.899545 TTCCCTCCTTCCGTCGGCT 62.900 63.158 6.34 0.00 0.00 5.52
362 365 3.839432 CCCTCCTTCCGTCGGCTC 61.839 72.222 6.34 0.00 0.00 4.70
366 369 1.878656 CTCCTTCCGTCGGCTCTGTT 61.879 60.000 6.34 0.00 0.00 3.16
398 401 1.885887 CCGCCTTTGATGTCCTTTGAA 59.114 47.619 0.00 0.00 0.00 2.69
402 405 4.488879 GCCTTTGATGTCCTTTGAATCAC 58.511 43.478 0.00 0.00 30.26 3.06
407 410 2.472695 TGTCCTTTGAATCACGGAGG 57.527 50.000 1.20 1.28 0.00 4.30
414 417 0.034198 TGAATCACGGAGGTGCGAAA 59.966 50.000 0.00 0.00 44.03 3.46
422 425 1.976112 GAGGTGCGAAAGACCTCCT 59.024 57.895 8.64 0.00 45.01 3.69
435 439 4.835891 CTCCTACCCCTCGCCGGT 62.836 72.222 1.90 0.00 37.40 5.28
451 455 2.520968 GTGGGAGGGGCACAACTT 59.479 61.111 0.00 0.00 0.00 2.66
452 456 1.152546 GTGGGAGGGGCACAACTTT 60.153 57.895 0.00 0.00 0.00 2.66
453 457 0.759060 GTGGGAGGGGCACAACTTTT 60.759 55.000 0.00 0.00 0.00 2.27
455 459 1.367471 GGAGGGGCACAACTTTTGC 59.633 57.895 0.00 0.00 39.41 3.68
476 480 2.614057 CTCTTGTTTGGTTCAGCGTCTT 59.386 45.455 0.00 0.00 0.00 3.01
480 484 4.742438 TGTTTGGTTCAGCGTCTTAATC 57.258 40.909 0.00 0.00 0.00 1.75
481 485 3.500680 TGTTTGGTTCAGCGTCTTAATCC 59.499 43.478 0.00 0.00 0.00 3.01
482 486 2.396590 TGGTTCAGCGTCTTAATCCC 57.603 50.000 0.00 0.00 0.00 3.85
483 487 1.626321 TGGTTCAGCGTCTTAATCCCA 59.374 47.619 0.00 0.00 0.00 4.37
484 488 2.238646 TGGTTCAGCGTCTTAATCCCAT 59.761 45.455 0.00 0.00 0.00 4.00
485 489 3.452990 TGGTTCAGCGTCTTAATCCCATA 59.547 43.478 0.00 0.00 0.00 2.74
486 490 4.058817 GGTTCAGCGTCTTAATCCCATAG 58.941 47.826 0.00 0.00 0.00 2.23
487 491 4.443034 GGTTCAGCGTCTTAATCCCATAGT 60.443 45.833 0.00 0.00 0.00 2.12
488 492 5.221382 GGTTCAGCGTCTTAATCCCATAGTA 60.221 44.000 0.00 0.00 0.00 1.82
491 495 6.301486 TCAGCGTCTTAATCCCATAGTAGTA 58.699 40.000 0.00 0.00 0.00 1.82
492 496 6.774170 TCAGCGTCTTAATCCCATAGTAGTAA 59.226 38.462 0.00 0.00 0.00 2.24
493 497 7.450634 TCAGCGTCTTAATCCCATAGTAGTAAT 59.549 37.037 0.00 0.00 0.00 1.89
494 498 8.737175 CAGCGTCTTAATCCCATAGTAGTAATA 58.263 37.037 0.00 0.00 0.00 0.98
518 538 1.228521 TAACGTCTGGTCCCCGTCA 60.229 57.895 0.00 0.00 32.95 4.35
523 543 2.677524 CTGGTCCCCGTCACGGTA 60.678 66.667 16.87 0.00 46.80 4.02
526 546 3.376078 GTCCCCGTCACGGTAGCA 61.376 66.667 16.87 0.00 46.80 3.49
536 556 0.797249 CACGGTAGCACGTCTAGCAC 60.797 60.000 17.96 7.36 46.75 4.40
579 599 2.716244 CTCCGTCGGATCTCGTGG 59.284 66.667 15.81 0.00 40.32 4.94
580 600 2.827190 TCCGTCGGATCTCGTGGG 60.827 66.667 10.71 10.81 40.32 4.61
584 604 0.102481 CGTCGGATCTCGTGGGATTT 59.898 55.000 0.00 0.00 40.32 2.17
585 605 1.335810 CGTCGGATCTCGTGGGATTTA 59.664 52.381 0.00 0.00 40.32 1.40
593 613 2.498481 TCTCGTGGGATTTAATCGGTGT 59.502 45.455 0.00 0.00 0.00 4.16
613 633 0.895530 TGGTCTTCGGTGGATCTGTC 59.104 55.000 0.00 0.00 0.00 3.51
615 635 2.291346 TGGTCTTCGGTGGATCTGTCTA 60.291 50.000 0.00 0.00 0.00 2.59
683 703 6.624423 TCTACGCTTTTCTTTATTAGACGGT 58.376 36.000 0.00 0.00 30.90 4.83
697 717 0.389426 GACGGTTGGTGTAGCACGAT 60.389 55.000 0.00 0.00 34.83 3.73
715 735 3.312421 ACGATGACTTCACAACAGGTTTG 59.688 43.478 0.00 0.00 0.00 2.93
716 736 3.312421 CGATGACTTCACAACAGGTTTGT 59.688 43.478 0.00 0.00 39.87 2.83
724 744 3.924576 AACAGGTTTGTTGGGCTCT 57.075 47.368 0.00 0.00 45.54 4.09
725 745 1.402787 AACAGGTTTGTTGGGCTCTG 58.597 50.000 0.00 0.00 45.54 3.35
727 747 1.531602 AGGTTTGTTGGGCTCTGGC 60.532 57.895 0.00 0.00 37.82 4.85
728 748 1.832167 GGTTTGTTGGGCTCTGGCA 60.832 57.895 0.00 0.00 40.87 4.92
729 749 1.187567 GGTTTGTTGGGCTCTGGCAT 61.188 55.000 0.00 0.00 40.87 4.40
735 759 1.499913 TTGGGCTCTGGCATGGAAGA 61.500 55.000 0.00 0.00 40.87 2.87
753 777 3.104766 GGTGATGACAGCGGCATG 58.895 61.111 1.45 0.01 34.87 4.06
766 790 1.421485 GGCATGTCTTTGACTCGCG 59.579 57.895 0.00 0.00 33.53 5.87
767 791 1.225854 GCATGTCTTTGACTCGCGC 60.226 57.895 0.00 0.00 33.15 6.86
768 792 1.630244 GCATGTCTTTGACTCGCGCT 61.630 55.000 5.56 0.00 33.15 5.92
773 797 3.176708 TGTCTTTGACTCGCGCTAATAC 58.823 45.455 5.56 0.00 33.15 1.89
785 993 5.877031 TCGCGCTAATACTTATAGTCATCC 58.123 41.667 5.56 0.00 0.00 3.51
790 998 7.468906 GCGCTAATACTTATAGTCATCCCTAGG 60.469 44.444 0.06 0.06 0.00 3.02
807 1034 9.855021 CATCCCTAGGTAATTTTTGTTACTTTG 57.145 33.333 8.29 0.00 35.43 2.77
843 1071 3.084039 CACTGCCATATGACAAGTGGTT 58.916 45.455 17.74 0.00 35.44 3.67
867 1199 1.149101 AGGGAGCCAACTTTTCTCCA 58.851 50.000 9.40 0.00 46.24 3.86
868 1200 1.074566 AGGGAGCCAACTTTTCTCCAG 59.925 52.381 9.40 0.00 46.24 3.86
871 1203 3.425659 GGAGCCAACTTTTCTCCAGAAT 58.574 45.455 2.88 0.00 44.38 2.40
992 2909 6.382087 TCTAACCCTAGCATTTCTATCTCCA 58.618 40.000 0.00 0.00 0.00 3.86
997 2914 5.540337 CCCTAGCATTTCTATCTCCAGTACA 59.460 44.000 0.00 0.00 0.00 2.90
1022 2939 8.865090 CAGTATGTTAGGTGAATTATCCTCTCT 58.135 37.037 4.45 0.00 35.51 3.10
1023 2940 9.440761 AGTATGTTAGGTGAATTATCCTCTCTT 57.559 33.333 4.45 2.31 35.51 2.85
1026 2943 9.981460 ATGTTAGGTGAATTATCCTCTCTTTTT 57.019 29.630 4.45 0.00 35.51 1.94
1065 2985 8.680039 TTCCTCTTCTATTCTAGTACTACTGC 57.320 38.462 0.00 0.00 0.00 4.40
1066 2986 7.225725 TCCTCTTCTATTCTAGTACTACTGCC 58.774 42.308 0.00 0.00 0.00 4.85
1133 3053 0.676466 TCAAATCGCTTCACCGGCAT 60.676 50.000 0.00 0.00 0.00 4.40
1149 3069 1.429463 GCATACATACGCCTACCTGC 58.571 55.000 0.00 0.00 0.00 4.85
1155 3075 1.453762 ATACGCCTACCTGCTCGACC 61.454 60.000 0.00 0.00 0.00 4.79
1204 3124 8.380742 TCTTGTCTTCACTTTCCTCCTATATT 57.619 34.615 0.00 0.00 0.00 1.28
1405 3339 5.825151 GGATGCCTACTTCTTTAAGCAGATT 59.175 40.000 0.00 0.00 36.05 2.40
1462 3396 1.309950 CAGCATGGCTCTGGAATGAG 58.690 55.000 0.00 0.00 36.40 2.90
1497 3431 2.031163 GTGGACGCTCAAGCCACT 59.969 61.111 0.00 0.00 46.56 4.00
1525 3473 2.628657 GGTAGGTACTATGGCTGGTGAG 59.371 54.545 0.00 0.00 45.60 3.51
1624 3576 6.932356 TCATCTACCTGAATGCTCATTTTC 57.068 37.500 0.00 0.00 0.00 2.29
1668 3620 4.084328 GCCTGTAGATAATGTCAATGCGTC 60.084 45.833 0.00 0.00 0.00 5.19
1673 3625 1.364721 TAATGTCAATGCGTCCCACG 58.635 50.000 0.00 0.00 45.88 4.94
1709 3661 5.462398 CAGTAAGACATACGTTAATCCAGGC 59.538 44.000 0.00 0.00 39.62 4.85
1710 3662 4.481368 AAGACATACGTTAATCCAGGCA 57.519 40.909 0.00 0.00 0.00 4.75
1723 3675 0.549950 CCAGGCACTCTCCATTCCAT 59.450 55.000 0.00 0.00 34.60 3.41
1730 3682 3.388308 CACTCTCCATTCCATAGCTTCG 58.612 50.000 0.00 0.00 0.00 3.79
1738 3690 3.394674 TTCCATAGCTTCGTTGTGTGA 57.605 42.857 0.00 0.00 0.00 3.58
1739 3691 2.683968 TCCATAGCTTCGTTGTGTGAC 58.316 47.619 0.00 0.00 0.00 3.67
1740 3692 2.036604 TCCATAGCTTCGTTGTGTGACA 59.963 45.455 0.00 0.00 0.00 3.58
1741 3693 3.002791 CCATAGCTTCGTTGTGTGACAT 58.997 45.455 0.00 0.00 0.00 3.06
1742 3694 3.062639 CCATAGCTTCGTTGTGTGACATC 59.937 47.826 0.00 0.00 0.00 3.06
1743 3695 1.512926 AGCTTCGTTGTGTGACATCC 58.487 50.000 0.00 0.00 0.00 3.51
1744 3696 1.202639 AGCTTCGTTGTGTGACATCCA 60.203 47.619 0.00 0.00 0.00 3.41
1763 3715 6.095440 ACATCCATCCATAACTTCTTTTTCCG 59.905 38.462 0.00 0.00 0.00 4.30
1809 3761 3.064545 GTCCATCACTGCATCAACTAAGC 59.935 47.826 0.00 0.00 0.00 3.09
1815 3767 1.078709 TGCATCAACTAAGCAGCGAC 58.921 50.000 0.00 0.00 33.75 5.19
1838 3790 5.183140 ACTTTGGCTACGCAATTAACAAGAT 59.817 36.000 0.00 0.00 0.00 2.40
1858 3810 1.885233 TGCATGCCGTTTTCTTGATGA 59.115 42.857 16.68 0.00 0.00 2.92
1874 3826 6.282930 TCTTGATGAGATGCGATTCATACAA 58.717 36.000 0.00 0.00 34.33 2.41
1891 3843 5.600484 TCATACAACTTTTTGTGGGGTTGAT 59.400 36.000 10.89 0.00 45.91 2.57
1894 3846 4.408596 ACAACTTTTTGTGGGGTTGATCAT 59.591 37.500 10.89 0.00 44.66 2.45
1963 3915 5.945191 TGAAACAGCATATTCTGGTCATTGA 59.055 36.000 7.30 0.00 38.36 2.57
1975 3927 7.482654 TTCTGGTCATTGATTATCATTCGAC 57.517 36.000 0.00 3.54 0.00 4.20
1976 3928 5.691754 TCTGGTCATTGATTATCATTCGACG 59.308 40.000 0.00 0.00 0.00 5.12
1977 3929 5.596845 TGGTCATTGATTATCATTCGACGA 58.403 37.500 0.00 0.00 0.00 4.20
1978 3930 5.691754 TGGTCATTGATTATCATTCGACGAG 59.308 40.000 0.00 0.00 0.00 4.18
1979 3931 5.692204 GGTCATTGATTATCATTCGACGAGT 59.308 40.000 0.00 0.00 0.00 4.18
1980 3932 6.201044 GGTCATTGATTATCATTCGACGAGTT 59.799 38.462 0.00 0.00 0.00 3.01
1981 3933 7.277205 GTCATTGATTATCATTCGACGAGTTC 58.723 38.462 0.00 0.00 0.00 3.01
1982 3934 7.168302 GTCATTGATTATCATTCGACGAGTTCT 59.832 37.037 0.00 0.00 0.00 3.01
1983 3935 7.379797 TCATTGATTATCATTCGACGAGTTCTC 59.620 37.037 0.00 0.00 0.00 2.87
1984 3936 5.520632 TGATTATCATTCGACGAGTTCTCC 58.479 41.667 0.00 0.00 0.00 3.71
1985 3937 5.299531 TGATTATCATTCGACGAGTTCTCCT 59.700 40.000 0.00 0.00 0.00 3.69
1986 3938 5.578005 TTATCATTCGACGAGTTCTCCTT 57.422 39.130 0.00 0.00 0.00 3.36
1987 3939 6.688637 TTATCATTCGACGAGTTCTCCTTA 57.311 37.500 0.00 0.00 0.00 2.69
1988 3940 5.776173 ATCATTCGACGAGTTCTCCTTAT 57.224 39.130 0.00 0.00 0.00 1.73
1989 3941 6.879276 ATCATTCGACGAGTTCTCCTTATA 57.121 37.500 0.00 0.00 0.00 0.98
1990 3942 6.879276 TCATTCGACGAGTTCTCCTTATAT 57.121 37.500 0.00 0.00 0.00 0.86
1991 3943 7.974482 TCATTCGACGAGTTCTCCTTATATA 57.026 36.000 0.00 0.00 0.00 0.86
1992 3944 8.563123 TCATTCGACGAGTTCTCCTTATATAT 57.437 34.615 0.00 0.00 0.00 0.86
1993 3945 8.451748 TCATTCGACGAGTTCTCCTTATATATG 58.548 37.037 0.00 0.00 0.00 1.78
1994 3946 7.974482 TTCGACGAGTTCTCCTTATATATGA 57.026 36.000 0.00 0.00 0.00 2.15
2035 3987 3.181476 GCCACCTTCAACACTCAAACATT 60.181 43.478 0.00 0.00 0.00 2.71
2078 4030 9.664332 GAACTTCTATGATGCACTGGATTATAT 57.336 33.333 0.00 0.00 0.00 0.86
2103 4055 9.950496 ATATCTTATGTGACACCAGAATTATCC 57.050 33.333 2.45 0.00 0.00 2.59
2110 4062 4.080356 TGACACCAGAATTATCCCTTGGAG 60.080 45.833 0.00 0.00 34.05 3.86
2171 4123 6.438259 TCTCTTCTACAAGACCGTGATAAG 57.562 41.667 0.00 0.00 34.71 1.73
2412 4364 6.761242 CGGATACAAATGTGGACTCTGATAAA 59.239 38.462 0.00 0.00 0.00 1.40
2442 4394 5.813080 AGCAACTACAGTCGAAAAAGTTT 57.187 34.783 0.00 0.00 0.00 2.66
2610 4562 4.081254 TCTCAGCTCTGCTAATTGACACAT 60.081 41.667 0.00 0.00 36.40 3.21
2684 4645 3.277142 TTATCCTCCTTTTTCCCGCTC 57.723 47.619 0.00 0.00 0.00 5.03
2685 4646 1.290134 ATCCTCCTTTTTCCCGCTCT 58.710 50.000 0.00 0.00 0.00 4.09
2697 4658 4.527583 CGCTCTCTGCCTGGGCTC 62.528 72.222 13.05 0.00 42.51 4.70
2708 4669 3.582208 CTGCCTGGGCTCTATCTTATTCT 59.418 47.826 13.05 0.00 42.51 2.40
2829 4791 8.918202 TCTTTAAGACATGTTATCAACCAGTT 57.082 30.769 0.00 0.00 0.00 3.16
2851 4813 6.263168 AGTTGTTGAGTCCTTATTTTCCTGTG 59.737 38.462 0.00 0.00 0.00 3.66
2870 4833 7.276658 TCCTGTGTTCACAAACTTGAGTTATA 58.723 34.615 7.07 0.00 37.25 0.98
2897 4860 3.374678 GGTGTTTACAAACCAGTCGTTGA 59.625 43.478 2.55 0.00 38.11 3.18
2984 5014 0.319900 GTGGCGCTCTTGTTCTCTCA 60.320 55.000 7.64 0.00 0.00 3.27
3010 5040 0.823356 TGAGACCACAGCTTTTGGCC 60.823 55.000 10.59 0.00 43.05 5.36
3011 5041 1.856265 GAGACCACAGCTTTTGGCCG 61.856 60.000 10.59 0.00 43.05 6.13
3023 5061 6.042143 CAGCTTTTGGCCGTAAATCATAAAT 58.958 36.000 0.00 0.00 43.05 1.40
3050 5088 8.211629 AGGTCCATGTAATAAGGTAGAAATGTC 58.788 37.037 0.00 0.00 0.00 3.06
3236 5303 7.290813 CCCTAGGTCTAAATTCCTATTTTGCT 58.709 38.462 8.29 0.00 36.00 3.91
3268 5342 1.112113 CCTCAAGGCTAGGCGTTCTA 58.888 55.000 11.10 0.00 34.33 2.10
3298 5372 1.510480 GCGCCTAGGCATGCTTAAGG 61.510 60.000 32.47 20.69 42.06 2.69
3301 5375 0.183492 CCTAGGCATGCTTAAGGGCA 59.817 55.000 18.92 0.00 46.63 5.36
3302 5376 1.312815 CTAGGCATGCTTAAGGGCAC 58.687 55.000 18.92 0.00 45.36 5.01
3303 5377 0.623194 TAGGCATGCTTAAGGGCACA 59.377 50.000 18.92 0.00 45.36 4.57
3465 5551 9.192642 AGTAGAGAGATAAAAGAGACCCTTTAC 57.807 37.037 0.00 0.00 43.90 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 2.780714 TCTCGGATAATCGGACCTCTC 58.219 52.381 0.00 0.00 0.00 3.20
12 13 3.660501 TGTGGATTCTCGGATAATCGG 57.339 47.619 9.23 0.00 34.74 4.18
18 19 4.697352 CAGTTCTTTTGTGGATTCTCGGAT 59.303 41.667 0.00 0.00 0.00 4.18
20 21 3.189287 CCAGTTCTTTTGTGGATTCTCGG 59.811 47.826 0.00 0.00 32.60 4.63
29 30 3.486383 TCTTAGGGCCAGTTCTTTTGTG 58.514 45.455 6.18 0.00 0.00 3.33
30 31 3.498661 CCTCTTAGGGCCAGTTCTTTTGT 60.499 47.826 6.18 0.00 0.00 2.83
32 33 2.986728 TCCTCTTAGGGCCAGTTCTTTT 59.013 45.455 6.18 0.00 35.59 2.27
49 51 6.463360 AGTCATCAAACTCTTCTTTCTCCTC 58.537 40.000 0.00 0.00 0.00 3.71
58 60 3.365220 CGTTCCGAGTCATCAAACTCTTC 59.635 47.826 2.89 0.00 42.90 2.87
61 63 2.942710 TCGTTCCGAGTCATCAAACTC 58.057 47.619 0.00 0.00 41.88 3.01
74 76 1.582502 GTCTAGCATCGTTTCGTTCCG 59.417 52.381 0.00 0.00 0.00 4.30
75 77 2.344741 GTGTCTAGCATCGTTTCGTTCC 59.655 50.000 0.00 0.00 0.00 3.62
79 81 2.923655 ACATGTGTCTAGCATCGTTTCG 59.076 45.455 0.00 0.00 0.00 3.46
98 100 4.634012 ATTGTGTTCTTGCCTAGGTACA 57.366 40.909 11.31 4.85 0.00 2.90
99 101 5.959618 AAATTGTGTTCTTGCCTAGGTAC 57.040 39.130 11.31 2.27 0.00 3.34
109 111 8.732746 AGTTGTACACTCTAAATTGTGTTCTT 57.267 30.769 0.00 0.00 43.88 2.52
110 112 9.826574 TTAGTTGTACACTCTAAATTGTGTTCT 57.173 29.630 13.82 3.17 43.88 3.01
143 145 5.464168 GCTTTTTCTTGCTAAGCTTCATGA 58.536 37.500 0.00 0.63 40.75 3.07
201 203 1.453155 CGCTAAGTGCATGAAAGGGT 58.547 50.000 0.00 0.00 43.06 4.34
236 238 0.630673 AAGGCCTCACCCAATGCATA 59.369 50.000 5.23 0.00 40.58 3.14
238 240 0.407528 TTAAGGCCTCACCCAATGCA 59.592 50.000 5.23 0.00 40.58 3.96
246 248 5.449177 GCATGTCTAAATGTTAAGGCCTCAC 60.449 44.000 5.23 6.95 0.00 3.51
263 266 2.551459 GCTTCTCAACTTGTGCATGTCT 59.449 45.455 0.00 0.00 0.00 3.41
268 271 0.664761 GCAGCTTCTCAACTTGTGCA 59.335 50.000 0.00 0.00 0.00 4.57
269 272 0.664761 TGCAGCTTCTCAACTTGTGC 59.335 50.000 0.00 0.00 0.00 4.57
278 281 5.111989 TGTGTGTCTAATATGCAGCTTCTC 58.888 41.667 0.00 0.00 0.00 2.87
286 289 8.499162 GGAGAATTACATGTGTGTCTAATATGC 58.501 37.037 9.11 0.00 39.77 3.14
332 335 3.181464 GGAAGGAGGGAAAATCCTAGTCG 60.181 52.174 0.00 0.00 46.75 4.18
340 343 0.252197 CCGACGGAAGGAGGGAAAAT 59.748 55.000 8.64 0.00 0.00 1.82
352 355 4.373116 GGCAACAGAGCCGACGGA 62.373 66.667 20.50 0.00 46.12 4.69
361 364 4.329545 GGGCAGACCGGCAACAGA 62.330 66.667 0.00 0.00 43.60 3.41
382 385 4.455533 TCCGTGATTCAAAGGACATCAAAG 59.544 41.667 7.75 0.00 0.00 2.77
385 388 3.599343 CTCCGTGATTCAAAGGACATCA 58.401 45.455 7.75 0.00 0.00 3.07
398 401 0.389948 GTCTTTCGCACCTCCGTGAT 60.390 55.000 0.00 0.00 43.14 3.06
402 405 2.657237 AGGTCTTTCGCACCTCCG 59.343 61.111 0.00 0.00 40.54 4.63
407 410 0.108281 GGGTAGGAGGTCTTTCGCAC 60.108 60.000 0.00 0.00 0.00 5.34
414 417 2.279408 GCGAGGGGTAGGAGGTCT 59.721 66.667 0.00 0.00 0.00 3.85
435 439 0.758685 CAAAAGTTGTGCCCCTCCCA 60.759 55.000 0.00 0.00 0.00 4.37
443 447 3.062504 CCAAACAAGAGCAAAAGTTGTGC 59.937 43.478 10.24 10.24 42.55 4.57
451 455 2.479389 CGCTGAACCAAACAAGAGCAAA 60.479 45.455 0.00 0.00 0.00 3.68
452 456 1.065401 CGCTGAACCAAACAAGAGCAA 59.935 47.619 0.00 0.00 0.00 3.91
453 457 0.662619 CGCTGAACCAAACAAGAGCA 59.337 50.000 0.00 0.00 0.00 4.26
455 459 2.213499 AGACGCTGAACCAAACAAGAG 58.787 47.619 0.00 0.00 0.00 2.85
480 484 9.837525 GACGTTAGACATTATTACTACTATGGG 57.162 37.037 0.00 0.00 0.00 4.00
484 488 9.618890 ACCAGACGTTAGACATTATTACTACTA 57.381 33.333 0.00 0.00 0.00 1.82
485 489 8.517062 ACCAGACGTTAGACATTATTACTACT 57.483 34.615 0.00 0.00 0.00 2.57
486 490 7.859875 GGACCAGACGTTAGACATTATTACTAC 59.140 40.741 0.00 0.00 0.00 2.73
487 491 7.013655 GGGACCAGACGTTAGACATTATTACTA 59.986 40.741 0.00 0.00 0.00 1.82
488 492 6.183360 GGGACCAGACGTTAGACATTATTACT 60.183 42.308 0.00 0.00 0.00 2.24
491 495 5.019785 GGGACCAGACGTTAGACATTATT 57.980 43.478 0.00 0.00 0.00 1.40
492 496 4.667519 GGGACCAGACGTTAGACATTAT 57.332 45.455 0.00 0.00 0.00 1.28
518 538 1.505353 GTGCTAGACGTGCTACCGT 59.495 57.895 0.00 0.00 45.18 4.83
521 541 0.522915 GACGGTGCTAGACGTGCTAC 60.523 60.000 11.42 0.00 44.24 3.58
523 543 2.201436 CTGACGGTGCTAGACGTGCT 62.201 60.000 11.42 0.00 44.24 4.40
536 556 2.343758 CCACACACCCTCTGACGG 59.656 66.667 0.00 0.00 0.00 4.79
561 581 2.716244 CACGAGATCCGACGGAGG 59.284 66.667 22.99 13.23 41.76 4.30
562 582 2.716244 CCACGAGATCCGACGGAG 59.284 66.667 22.99 10.96 41.76 4.63
564 584 1.735376 AATCCCACGAGATCCGACGG 61.735 60.000 7.84 7.84 41.76 4.79
579 599 4.201783 CGAAGACCAACACCGATTAAATCC 60.202 45.833 0.00 0.00 0.00 3.01
580 600 4.201783 CCGAAGACCAACACCGATTAAATC 60.202 45.833 0.00 0.00 0.00 2.17
584 604 1.619827 ACCGAAGACCAACACCGATTA 59.380 47.619 0.00 0.00 0.00 1.75
585 605 0.395312 ACCGAAGACCAACACCGATT 59.605 50.000 0.00 0.00 0.00 3.34
593 613 1.275291 GACAGATCCACCGAAGACCAA 59.725 52.381 0.00 0.00 0.00 3.67
613 633 3.634448 ACATGACCGAAGACTGGATCTAG 59.366 47.826 4.25 4.25 36.27 2.43
615 635 2.167281 CACATGACCGAAGACTGGATCT 59.833 50.000 0.00 0.00 40.46 2.75
663 683 5.106830 ACCAACCGTCTAATAAAGAAAAGCG 60.107 40.000 0.00 0.00 35.47 4.68
683 703 2.036604 TGAAGTCATCGTGCTACACCAA 59.963 45.455 0.00 0.00 0.00 3.67
715 735 1.304381 TTCCATGCCAGAGCCCAAC 60.304 57.895 0.00 0.00 38.69 3.77
716 736 1.000521 CTTCCATGCCAGAGCCCAA 60.001 57.895 0.00 0.00 38.69 4.12
718 738 1.153005 CTCTTCCATGCCAGAGCCC 60.153 63.158 6.48 0.00 38.69 5.19
719 739 1.153005 CCTCTTCCATGCCAGAGCC 60.153 63.158 12.04 0.00 36.03 4.70
721 741 0.907486 TCACCTCTTCCATGCCAGAG 59.093 55.000 10.95 10.95 36.96 3.35
722 742 1.211212 CATCACCTCTTCCATGCCAGA 59.789 52.381 0.00 0.00 0.00 3.86
723 743 1.211212 TCATCACCTCTTCCATGCCAG 59.789 52.381 0.00 0.00 0.00 4.85
724 744 1.065199 GTCATCACCTCTTCCATGCCA 60.065 52.381 0.00 0.00 0.00 4.92
725 745 1.065199 TGTCATCACCTCTTCCATGCC 60.065 52.381 0.00 0.00 0.00 4.40
727 747 2.286872 GCTGTCATCACCTCTTCCATG 58.713 52.381 0.00 0.00 0.00 3.66
728 748 1.134580 CGCTGTCATCACCTCTTCCAT 60.135 52.381 0.00 0.00 0.00 3.41
729 749 0.247460 CGCTGTCATCACCTCTTCCA 59.753 55.000 0.00 0.00 0.00 3.53
735 759 1.450848 CATGCCGCTGTCATCACCT 60.451 57.895 0.00 0.00 0.00 4.00
753 777 3.436496 AGTATTAGCGCGAGTCAAAGAC 58.564 45.455 12.10 3.12 0.00 3.01
758 782 5.467735 TGACTATAAGTATTAGCGCGAGTCA 59.532 40.000 12.10 12.62 38.67 3.41
766 790 8.826293 ACCTAGGGATGACTATAAGTATTAGC 57.174 38.462 14.81 0.00 31.76 3.09
807 1034 9.726232 CATATGGCAGTGCAACAAATATATATC 57.274 33.333 18.61 0.00 41.43 1.63
814 1041 3.510753 TGTCATATGGCAGTGCAACAAAT 59.489 39.130 18.61 4.73 41.43 2.32
816 1043 2.512705 TGTCATATGGCAGTGCAACAA 58.487 42.857 18.61 0.00 41.43 2.83
818 1045 2.489329 ACTTGTCATATGGCAGTGCAAC 59.511 45.455 18.61 0.22 0.00 4.17
819 1046 2.488937 CACTTGTCATATGGCAGTGCAA 59.511 45.455 18.61 5.88 0.00 4.08
821 1048 1.402968 CCACTTGTCATATGGCAGTGC 59.597 52.381 23.33 6.55 31.89 4.40
843 1071 4.587262 GGAGAAAAGTTGGCTCCCTAAAAA 59.413 41.667 11.47 0.00 41.84 1.94
847 1075 2.305927 CTGGAGAAAAGTTGGCTCCCTA 59.694 50.000 17.22 3.98 46.01 3.53
849 1077 1.073923 TCTGGAGAAAAGTTGGCTCCC 59.926 52.381 17.22 5.02 46.01 4.30
850 1078 2.568623 TCTGGAGAAAAGTTGGCTCC 57.431 50.000 14.43 14.43 46.60 4.70
853 1081 5.940470 TCTTCTATTCTGGAGAAAAGTTGGC 59.060 40.000 0.00 0.00 37.61 4.52
854 1082 6.936900 TGTCTTCTATTCTGGAGAAAAGTTGG 59.063 38.462 0.00 0.00 37.61 3.77
856 1084 6.647067 CGTGTCTTCTATTCTGGAGAAAAGTT 59.353 38.462 0.00 0.00 37.61 2.66
860 1088 5.105716 CCTCGTGTCTTCTATTCTGGAGAAA 60.106 44.000 0.00 0.00 37.61 2.52
862 1090 3.948473 CCTCGTGTCTTCTATTCTGGAGA 59.052 47.826 0.00 0.00 0.00 3.71
867 1199 1.757699 GGCCCTCGTGTCTTCTATTCT 59.242 52.381 0.00 0.00 0.00 2.40
868 1200 1.202545 GGGCCCTCGTGTCTTCTATTC 60.203 57.143 17.04 0.00 0.00 1.75
871 1203 2.050350 CGGGCCCTCGTGTCTTCTA 61.050 63.158 22.43 0.00 0.00 2.10
992 2909 9.435570 AGGATAATTCACCTAACATACTGTACT 57.564 33.333 2.08 0.00 34.47 2.73
997 2914 9.440761 AAGAGAGGATAATTCACCTAACATACT 57.559 33.333 3.75 0.00 36.57 2.12
1024 2941 7.123383 AGAAGAGGAAACAAGTTAGGGAAAAA 58.877 34.615 0.00 0.00 0.00 1.94
1025 2942 6.669631 AGAAGAGGAAACAAGTTAGGGAAAA 58.330 36.000 0.00 0.00 0.00 2.29
1026 2943 6.262056 AGAAGAGGAAACAAGTTAGGGAAA 57.738 37.500 0.00 0.00 0.00 3.13
1027 2944 5.906772 AGAAGAGGAAACAAGTTAGGGAA 57.093 39.130 0.00 0.00 0.00 3.97
1028 2945 7.458170 AGAATAGAAGAGGAAACAAGTTAGGGA 59.542 37.037 0.00 0.00 0.00 4.20
1029 2946 7.625469 AGAATAGAAGAGGAAACAAGTTAGGG 58.375 38.462 0.00 0.00 0.00 3.53
1133 3053 0.949397 CGAGCAGGTAGGCGTATGTA 59.051 55.000 0.00 0.00 39.27 2.29
1155 3075 2.979813 GTTTTAGTCACTGCGGCATTTG 59.020 45.455 1.75 4.13 0.00 2.32
1204 3124 4.980805 GCGTCACCTGCGGGACAA 62.981 66.667 21.41 0.00 33.66 3.18
1405 3339 2.361992 CAGAGCATGCCCTTGCCA 60.362 61.111 15.66 0.00 43.83 4.92
1497 3431 2.694920 GCCATAGTACCTACCTTGGGGA 60.695 54.545 0.00 0.00 36.25 4.81
1591 3543 6.493116 CATTCAGGTAGATGAACTTCATTGC 58.507 40.000 5.73 1.02 41.76 3.56
1648 3600 4.141824 TGGGACGCATTGACATTATCTACA 60.142 41.667 0.00 0.00 0.00 2.74
1697 3649 1.207089 TGGAGAGTGCCTGGATTAACG 59.793 52.381 0.00 0.00 0.00 3.18
1709 3661 3.181471 ACGAAGCTATGGAATGGAGAGTG 60.181 47.826 0.00 0.00 0.00 3.51
1710 3662 3.034635 ACGAAGCTATGGAATGGAGAGT 58.965 45.455 0.00 0.00 0.00 3.24
1723 3675 2.036604 TGGATGTCACACAACGAAGCTA 59.963 45.455 0.00 0.00 0.00 3.32
1730 3682 4.943705 AGTTATGGATGGATGTCACACAAC 59.056 41.667 0.00 0.00 0.00 3.32
1738 3690 6.095440 CGGAAAAAGAAGTTATGGATGGATGT 59.905 38.462 0.00 0.00 0.00 3.06
1739 3691 6.318648 TCGGAAAAAGAAGTTATGGATGGATG 59.681 38.462 0.00 0.00 0.00 3.51
1740 3692 6.423182 TCGGAAAAAGAAGTTATGGATGGAT 58.577 36.000 0.00 0.00 0.00 3.41
1741 3693 5.811190 TCGGAAAAAGAAGTTATGGATGGA 58.189 37.500 0.00 0.00 0.00 3.41
1742 3694 6.509418 TTCGGAAAAAGAAGTTATGGATGG 57.491 37.500 0.00 0.00 0.00 3.51
1838 3790 1.885233 TCATCAAGAAAACGGCATGCA 59.115 42.857 21.36 0.00 0.00 3.96
1858 3810 6.803320 CACAAAAAGTTGTATGAATCGCATCT 59.197 34.615 0.00 0.00 46.47 2.90
1874 3826 3.244181 GCATGATCAACCCCACAAAAAGT 60.244 43.478 0.00 0.00 0.00 2.66
1891 3843 1.869132 GCAGCTACGATCAATGCATGA 59.131 47.619 0.00 0.03 43.67 3.07
1894 3846 1.736612 TTGCAGCTACGATCAATGCA 58.263 45.000 0.00 0.00 44.58 3.96
1947 3899 9.983804 CGAATGATAATCAATGACCAGAATATG 57.016 33.333 0.00 0.00 0.00 1.78
1963 3915 5.776173 AGGAGAACTCGTCGAATGATAAT 57.224 39.130 0.00 0.00 0.00 1.28
1975 3927 7.367159 ACTCGTCATATATAAGGAGAACTCG 57.633 40.000 11.72 1.75 32.96 4.18
1976 3928 9.005777 AGAACTCGTCATATATAAGGAGAACTC 57.994 37.037 11.72 6.01 32.96 3.01
1977 3929 8.927675 AGAACTCGTCATATATAAGGAGAACT 57.072 34.615 11.72 7.63 32.96 3.01
1978 3930 8.238631 GGAGAACTCGTCATATATAAGGAGAAC 58.761 40.741 11.72 5.89 32.96 3.01
1979 3931 8.164733 AGGAGAACTCGTCATATATAAGGAGAA 58.835 37.037 11.72 0.00 32.96 2.87
1980 3932 7.691213 AGGAGAACTCGTCATATATAAGGAGA 58.309 38.462 11.72 0.00 32.96 3.71
1981 3933 7.931578 AGGAGAACTCGTCATATATAAGGAG 57.068 40.000 4.34 4.34 34.42 3.69
1982 3934 9.976776 ATAAGGAGAACTCGTCATATATAAGGA 57.023 33.333 0.00 0.00 0.00 3.36
1989 3941 8.634444 GGCATATATAAGGAGAACTCGTCATAT 58.366 37.037 5.77 5.77 0.00 1.78
1990 3942 7.614192 TGGCATATATAAGGAGAACTCGTCATA 59.386 37.037 0.00 0.00 0.00 2.15
1991 3943 6.437477 TGGCATATATAAGGAGAACTCGTCAT 59.563 38.462 0.00 0.00 0.00 3.06
1992 3944 5.773176 TGGCATATATAAGGAGAACTCGTCA 59.227 40.000 0.00 0.00 0.00 4.35
1993 3945 6.094061 GTGGCATATATAAGGAGAACTCGTC 58.906 44.000 0.00 0.00 0.00 4.20
1994 3946 5.047235 GGTGGCATATATAAGGAGAACTCGT 60.047 44.000 0.00 0.00 0.00 4.18
2078 4030 8.375506 GGGATAATTCTGGTGTCACATAAGATA 58.624 37.037 5.12 0.00 0.00 1.98
2171 4123 8.182227 GGGTGAACATTAGCAAATAGAAGTTAC 58.818 37.037 0.00 0.00 0.00 2.50
2427 4379 3.377172 CCTGGTCAAACTTTTTCGACTGT 59.623 43.478 0.00 0.00 0.00 3.55
2442 4394 0.467290 GGTTTTGTGCCTCCTGGTCA 60.467 55.000 0.00 0.00 35.27 4.02
2552 4504 4.558226 ACTCTAGCATGACACCATTTCA 57.442 40.909 0.00 0.00 0.00 2.69
2610 4562 9.884636 TTGCATTTATTCTAAGTTACTAGCTGA 57.115 29.630 0.00 0.00 0.00 4.26
2684 4645 1.422531 AAGATAGAGCCCAGGCAGAG 58.577 55.000 12.03 0.00 44.88 3.35
2685 4646 2.775490 TAAGATAGAGCCCAGGCAGA 57.225 50.000 12.03 0.00 44.88 4.26
2745 4706 8.145767 CCAACAAGATTAATATTGGCATGACAT 58.854 33.333 22.97 0.00 33.87 3.06
2829 4791 5.690865 ACACAGGAAAATAAGGACTCAACA 58.309 37.500 0.00 0.00 0.00 3.33
2836 4798 6.605594 AGTTTGTGAACACAGGAAAATAAGGA 59.394 34.615 7.67 0.00 42.94 3.36
2851 4813 8.784043 ACCAGAATATAACTCAAGTTTGTGAAC 58.216 33.333 0.00 0.00 39.31 3.18
2891 4854 3.244770 ACTGGAAAATAAGGGCTCAACGA 60.245 43.478 0.00 0.00 0.00 3.85
2897 4860 1.359130 AGCCACTGGAAAATAAGGGCT 59.641 47.619 0.00 0.00 44.92 5.19
2984 5014 3.067091 CTGTGGTCTCAGCAGCCT 58.933 61.111 0.00 0.00 0.00 4.58
3008 5038 6.430000 ACATGGACCTATTTATGATTTACGGC 59.570 38.462 0.00 0.00 0.00 5.68
3023 5061 9.220906 ACATTTCTACCTTATTACATGGACCTA 57.779 33.333 0.00 0.00 0.00 3.08
3037 5075 4.039973 TCCACACTTCGACATTTCTACCTT 59.960 41.667 0.00 0.00 0.00 3.50
3050 5088 1.867233 CTTCCACTGTTCCACACTTCG 59.133 52.381 0.00 0.00 0.00 3.79
3236 5303 1.198713 CTTGAGGGCTCTAGGCAGAA 58.801 55.000 5.85 0.00 44.01 3.02
3276 5350 0.318441 TAAGCATGCCTAGGCGCTAG 59.682 55.000 29.38 19.59 45.51 3.42
3287 5361 0.967380 AGGTGTGCCCTTAAGCATGC 60.967 55.000 10.51 10.51 42.73 4.06
3322 5396 8.745590 ACTGGCTACCAACGATTTTATTTATTT 58.254 29.630 0.00 0.00 30.80 1.40
3392 5467 1.873591 CTAAAGTGACAGGTGCACCAC 59.126 52.381 36.39 25.08 38.89 4.16
3395 5470 2.256117 ACCTAAAGTGACAGGTGCAC 57.744 50.000 8.80 8.80 43.64 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.