Multiple sequence alignment - TraesCS1B01G167800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G167800 chr1B 100.000 8679 0 0 1 8679 297091598 297100276 0.000000e+00 16028.0
1 TraesCS1B01G167800 chr1B 92.079 101 8 0 2337 2437 507106477 507106377 9.080000e-30 143.0
2 TraesCS1B01G167800 chr1B 91.089 101 9 0 2337 2437 507061150 507061050 4.230000e-28 137.0
3 TraesCS1B01G167800 chr1B 88.462 104 11 1 2345 2447 12433296 12433193 3.290000e-24 124.0
4 TraesCS1B01G167800 chr1B 89.796 98 8 1 2346 2441 396753981 396754078 3.290000e-24 124.0
5 TraesCS1B01G167800 chr1A 97.371 3271 54 16 2428 5674 257553246 257556508 0.000000e+00 5535.0
6 TraesCS1B01G167800 chr1A 94.189 2461 82 22 6006 8429 257556676 257559112 0.000000e+00 3696.0
7 TraesCS1B01G167800 chr1A 91.478 1631 70 17 749 2347 257551655 257553248 0.000000e+00 2178.0
8 TraesCS1B01G167800 chr1A 85.981 749 75 10 2 745 257550951 257551674 0.000000e+00 774.0
9 TraesCS1B01G167800 chr1A 93.627 204 11 2 8414 8615 257559164 257559367 3.940000e-78 303.0
10 TraesCS1B01G167800 chr1A 94.675 169 5 1 5729 5893 257556511 257556679 8.640000e-65 259.0
11 TraesCS1B01G167800 chr1A 92.405 79 6 0 6451 6529 107472095 107472017 7.120000e-21 113.0
12 TraesCS1B01G167800 chr1A 93.151 73 4 1 8607 8679 257564732 257564803 1.190000e-18 106.0
13 TraesCS1B01G167800 chr1D 95.366 2050 57 16 6006 8045 203290944 203292965 0.000000e+00 3225.0
14 TraesCS1B01G167800 chr1D 97.046 1794 35 11 2474 4252 203285639 203287429 0.000000e+00 3003.0
15 TraesCS1B01G167800 chr1D 97.890 1659 28 3 4239 5893 203289292 203290947 0.000000e+00 2863.0
16 TraesCS1B01G167800 chr1D 94.466 1536 42 17 784 2305 203284136 203285642 0.000000e+00 2326.0
17 TraesCS1B01G167800 chr1D 87.974 765 59 18 1 741 203283262 203284017 0.000000e+00 872.0
18 TraesCS1B01G167800 chr1D 92.164 268 19 2 8414 8679 203293369 203293636 2.290000e-100 377.0
19 TraesCS1B01G167800 chr1D 91.322 242 10 4 8196 8429 203293079 203293317 3.910000e-83 320.0
20 TraesCS1B01G167800 chr1D 95.238 105 5 0 8107 8211 203292961 203293065 5.390000e-37 167.0
21 TraesCS1B01G167800 chr1D 95.652 92 4 0 2345 2436 473933015 473932924 1.950000e-31 148.0
22 TraesCS1B01G167800 chr1D 90.291 103 8 2 2343 2444 96041028 96041129 5.470000e-27 134.0
23 TraesCS1B01G167800 chr1D 94.915 59 3 0 2502 2560 203285823 203285881 9.280000e-15 93.5
24 TraesCS1B01G167800 chr6D 75.323 620 113 32 5041 5631 47662474 47661866 2.400000e-65 261.0
25 TraesCS1B01G167800 chr6B 75.323 620 112 30 5041 5631 123843275 123843882 8.640000e-65 259.0
26 TraesCS1B01G167800 chr6B 92.500 80 5 1 6449 6528 672163647 672163725 7.120000e-21 113.0
27 TraesCS1B01G167800 chr6B 83.607 122 16 3 2345 2463 521118926 521119046 2.560000e-20 111.0
28 TraesCS1B01G167800 chr5B 93.333 135 8 1 5884 6017 619116603 619116737 1.910000e-46 198.0
29 TraesCS1B01G167800 chr5B 85.443 158 13 6 2176 2325 98663178 98663333 1.170000e-33 156.0
30 TraesCS1B01G167800 chr5B 83.571 140 20 2 2155 2292 317304047 317304185 2.540000e-25 128.0
31 TraesCS1B01G167800 chr5B 93.590 78 5 0 6452 6529 574956515 574956438 5.500000e-22 117.0
32 TraesCS1B01G167800 chr7A 96.610 118 4 0 5890 6007 105313853 105313736 6.870000e-46 196.0
33 TraesCS1B01G167800 chr7A 93.396 106 6 1 2187 2292 201987013 201987117 1.170000e-33 156.0
34 TraesCS1B01G167800 chr7A 96.667 90 3 0 2344 2433 32008556 32008467 5.430000e-32 150.0
35 TraesCS1B01G167800 chr2A 94.531 128 6 1 5889 6016 78845692 78845566 6.870000e-46 196.0
36 TraesCS1B01G167800 chr2A 94.681 94 5 0 2344 2437 111412090 111412183 7.020000e-31 147.0
37 TraesCS1B01G167800 chr2A 80.405 148 28 1 6113 6259 750108162 750108309 2.560000e-20 111.0
38 TraesCS1B01G167800 chr5A 95.122 123 6 0 5885 6007 649239373 649239251 2.470000e-45 195.0
39 TraesCS1B01G167800 chr5A 84.810 158 14 3 2176 2325 86662019 86662174 5.430000e-32 150.0
40 TraesCS1B01G167800 chr5A 83.803 142 20 2 2153 2292 368554875 368554735 1.970000e-26 132.0
41 TraesCS1B01G167800 chr5A 89.552 67 7 0 8032 8098 374902378 374902312 1.550000e-12 86.1
42 TraesCS1B01G167800 chr2B 95.833 120 5 0 5888 6007 643184739 643184620 2.470000e-45 195.0
43 TraesCS1B01G167800 chr2B 89.431 123 12 1 4591 4713 707609879 707610000 4.200000e-33 154.0
44 TraesCS1B01G167800 chr2B 90.566 53 5 0 2389 2441 504483468 504483416 4.350000e-08 71.3
45 TraesCS1B01G167800 chr2D 95.122 123 5 1 5891 6013 294973455 294973576 8.890000e-45 193.0
46 TraesCS1B01G167800 chr2D 91.453 117 9 1 2176 2292 122864263 122864148 9.020000e-35 159.0
47 TraesCS1B01G167800 chr2D 94.595 74 4 0 6449 6522 617437222 617437295 1.980000e-21 115.0
48 TraesCS1B01G167800 chr3D 94.309 123 7 0 5889 6011 94848841 94848719 1.150000e-43 189.0
49 TraesCS1B01G167800 chr3D 91.241 137 10 2 5872 6007 609106331 609106196 1.490000e-42 185.0
50 TraesCS1B01G167800 chr3D 91.729 133 10 1 5875 6007 107670947 107671078 5.350000e-42 183.0
51 TraesCS1B01G167800 chr3D 96.629 89 3 0 2345 2433 172830740 172830828 1.950000e-31 148.0
52 TraesCS1B01G167800 chr3D 93.878 98 5 1 2340 2437 604391405 604391501 7.020000e-31 147.0
53 TraesCS1B01G167800 chr3D 84.800 125 14 4 2164 2286 29167283 29167404 4.260000e-23 121.0
54 TraesCS1B01G167800 chr3D 91.860 86 4 3 6452 6534 422517724 422517809 5.500000e-22 117.0
55 TraesCS1B01G167800 chr7B 90.083 121 10 2 2173 2292 155471163 155471282 1.170000e-33 156.0
56 TraesCS1B01G167800 chr4B 94.681 94 4 1 2345 2437 117191185 117191092 2.530000e-30 145.0
57 TraesCS1B01G167800 chr4B 86.957 115 6 4 2183 2297 92547359 92547254 4.260000e-23 121.0
58 TraesCS1B01G167800 chr4B 85.088 114 15 2 2185 2298 232097930 232097819 1.980000e-21 115.0
59 TraesCS1B01G167800 chr7D 93.750 96 5 1 2337 2432 622185155 622185061 9.080000e-30 143.0
60 TraesCS1B01G167800 chr7D 88.660 97 11 0 2345 2441 69957061 69956965 1.530000e-22 119.0
61 TraesCS1B01G167800 chr4D 84.722 144 18 4 2183 2325 397160001 397159861 3.270000e-29 141.0
62 TraesCS1B01G167800 chr5D 83.221 149 20 4 2176 2324 265961978 265961835 1.970000e-26 132.0
63 TraesCS1B01G167800 chr6A 85.039 127 17 2 2166 2292 184388167 184388291 2.540000e-25 128.0
64 TraesCS1B01G167800 chr3A 84.000 125 15 4 2164 2286 38393163 38393284 1.980000e-21 115.0
65 TraesCS1B01G167800 chr3A 94.595 74 4 0 6449 6522 353624523 353624596 1.980000e-21 115.0
66 TraesCS1B01G167800 chr3A 94.521 73 4 0 6452 6524 127196456 127196384 7.120000e-21 113.0
67 TraesCS1B01G167800 chr3A 87.755 98 10 2 2344 2440 653512622 653512526 7.120000e-21 113.0
68 TraesCS1B01G167800 chr3A 86.598 97 12 1 2345 2441 600920364 600920459 1.190000e-18 106.0
69 TraesCS1B01G167800 chr3B 84.906 106 14 2 2337 2442 238571845 238571742 1.190000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G167800 chr1B 297091598 297100276 8678 False 16028.000000 16028 100.000000 1 8679 1 chr1B.!!$F1 8678
1 TraesCS1B01G167800 chr1A 257550951 257559367 8416 False 2124.166667 5535 92.886833 2 8615 6 chr1A.!!$F2 8613
2 TraesCS1B01G167800 chr1D 203283262 203293636 10374 False 1471.833333 3225 94.042333 1 8679 9 chr1D.!!$F2 8678
3 TraesCS1B01G167800 chr6D 47661866 47662474 608 True 261.000000 261 75.323000 5041 5631 1 chr6D.!!$R1 590
4 TraesCS1B01G167800 chr6B 123843275 123843882 607 False 259.000000 259 75.323000 5041 5631 1 chr6B.!!$F1 590

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
645 671 0.107643 GGGTCCATGAAGCTCCTAGC 59.892 60.000 0.00 0.00 42.84 3.42 F
1576 1687 0.413037 TGTTGGGATGGGGCTCATTT 59.587 50.000 0.00 0.00 35.97 2.32 F
2882 3027 2.230266 CCAAATACAGAAAACACCCGGG 59.770 50.000 22.25 22.25 0.00 5.73 F
3120 3271 0.725784 CGTCGCGCTTCTTTTGCATT 60.726 50.000 5.56 0.00 0.00 3.56 F
3520 3674 1.660607 CACACATCGATTTGGTCCTCG 59.339 52.381 15.58 0.00 36.25 4.63 F
4741 6783 1.780503 AATGGTGCTGCCTAAATCCC 58.219 50.000 0.00 0.00 38.35 3.85 F
5920 7984 0.034896 GTCCGAGAAAGCTTGTCCCA 59.965 55.000 0.00 0.00 0.00 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1709 1840 0.826062 CCCTATTGCTTTGGCCTTGG 59.174 55.000 3.32 0.0 37.74 3.61 R
3000 3145 0.817634 CGGAGTGGCAAACTTGTGGA 60.818 55.000 0.00 0.0 40.07 4.02 R
4719 6761 3.256631 GGGATTTAGGCAGCACCATTATG 59.743 47.826 0.00 0.0 43.14 1.90 R
5002 7044 9.883142 ATGAAGTTCAAAATTGTACTCCAAAAA 57.117 25.926 10.14 0.0 37.75 1.94 R
5676 7736 4.758688 CCCATAATGCTTTTTCAGAACCC 58.241 43.478 0.00 0.0 0.00 4.11 R
5994 8058 0.033228 GATCATGCTCCCTCTGTCCG 59.967 60.000 0.00 0.0 0.00 4.79 R
8053 10148 0.183492 CCTAGGCATGCTTAAGGGCA 59.817 55.000 18.92 0.0 46.63 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.201910 TCGACTCAACAATTTAGTTTTGCG 58.798 37.500 0.00 0.00 0.00 4.85
45 46 1.336755 GTTTTGCGGATTGTGTGGACT 59.663 47.619 0.00 0.00 0.00 3.85
114 115 0.187117 TTTGGTGTGATCCAAGCCCA 59.813 50.000 0.00 0.00 46.27 5.36
123 124 2.309755 TGATCCAAGCCCAGATGTCTTT 59.690 45.455 0.00 0.00 0.00 2.52
221 222 1.337728 ACGTCGATGGCTGATGACAAA 60.338 47.619 9.90 0.00 33.27 2.83
248 249 1.571460 CCTGATTTATCGCGGCTGC 59.429 57.895 7.70 7.70 37.91 5.25
276 298 4.133796 GCCATGGCAGCGGGTTTC 62.134 66.667 32.08 0.00 41.49 2.78
277 299 2.676121 CCATGGCAGCGGGTTTCA 60.676 61.111 0.00 0.00 0.00 2.69
280 302 1.973281 ATGGCAGCGGGTTTCACTG 60.973 57.895 0.00 0.00 34.48 3.66
281 303 2.281484 GGCAGCGGGTTTCACTGA 60.281 61.111 0.00 0.00 33.10 3.41
284 306 1.237285 GCAGCGGGTTTCACTGACAT 61.237 55.000 0.00 0.00 33.10 3.06
285 307 0.518636 CAGCGGGTTTCACTGACATG 59.481 55.000 0.00 0.00 33.10 3.21
286 308 0.606401 AGCGGGTTTCACTGACATGG 60.606 55.000 0.00 0.00 0.00 3.66
287 309 1.875963 CGGGTTTCACTGACATGGC 59.124 57.895 0.00 0.00 0.00 4.40
289 311 1.327303 GGGTTTCACTGACATGGCAA 58.673 50.000 1.11 0.00 0.00 4.52
290 312 1.000274 GGGTTTCACTGACATGGCAAC 60.000 52.381 1.11 0.00 0.00 4.17
331 356 3.123050 ACAACGCTTTTGAATTTGGCTC 58.877 40.909 2.19 0.00 0.00 4.70
353 378 3.181483 CCCATAGCAACATTTTCCTCTGC 60.181 47.826 0.00 0.00 0.00 4.26
355 380 4.883585 CCATAGCAACATTTTCCTCTGCTA 59.116 41.667 4.70 4.70 46.46 3.49
360 385 3.550437 ACATTTTCCTCTGCTATCGCT 57.450 42.857 0.00 0.00 36.97 4.93
424 449 1.535028 AGCGACAACAATGCGAAATCA 59.465 42.857 0.00 0.00 0.00 2.57
431 456 5.295950 ACAACAATGCGAAATCAAAATGGA 58.704 33.333 0.00 0.00 0.00 3.41
437 463 1.469079 CGAAATCAAAATGGACGGCCC 60.469 52.381 3.83 0.00 0.00 5.80
443 469 1.135024 CAAAATGGACGGCCCTTCATG 60.135 52.381 3.83 0.14 35.38 3.07
467 493 1.468054 GGTGTTCATGATTGAAGCGGC 60.468 52.381 0.00 0.00 42.41 6.53
472 498 1.944709 TCATGATTGAAGCGGCATCAG 59.055 47.619 8.01 0.00 0.00 2.90
494 520 4.448060 AGACTCTTTGGAAAACGATTCGAC 59.552 41.667 13.95 1.42 0.00 4.20
554 580 8.819974 CAACAAGTTATTTTTGCAGATTGAGTT 58.180 29.630 0.00 0.00 0.00 3.01
585 611 7.393796 TGATTACGTTAATTGGGAAGGCTTTTA 59.606 33.333 0.00 0.00 0.00 1.52
597 623 6.551601 TGGGAAGGCTTTTAAAGTTGTTCATA 59.448 34.615 0.00 0.00 0.00 2.15
616 642 9.860650 TGTTCATAATATTGGTAGGCATACTTT 57.139 29.630 8.63 0.00 32.12 2.66
645 671 0.107643 GGGTCCATGAAGCTCCTAGC 59.892 60.000 0.00 0.00 42.84 3.42
750 776 5.803020 AAAAACCACTAATTTGCGCAAAA 57.197 30.435 36.42 21.70 33.56 2.44
751 777 5.803020 AAAACCACTAATTTGCGCAAAAA 57.197 30.435 36.42 25.83 33.56 1.94
776 802 3.006967 ACATCCACTAATACTCGATGGGC 59.993 47.826 0.00 0.00 35.67 5.36
837 941 0.687354 TGAGCTTGTCTCCCTTGTCC 59.313 55.000 0.00 0.00 41.18 4.02
846 951 2.198304 CTCCCTTGTCCTTTCCCCGG 62.198 65.000 0.00 0.00 0.00 5.73
902 1007 2.438434 CCACCCCAATCACTCGCC 60.438 66.667 0.00 0.00 0.00 5.54
984 1089 1.880027 CTCCGTTTCTCCAACCCAAAG 59.120 52.381 0.00 0.00 30.65 2.77
1307 1418 2.126031 GTTCAGCCCCGTCGAGTC 60.126 66.667 0.00 0.00 0.00 3.36
1308 1419 2.599281 TTCAGCCCCGTCGAGTCA 60.599 61.111 0.00 0.00 0.00 3.41
1396 1507 9.569074 TTTAGCAATAATAGTATAGGGATCCCA 57.431 33.333 32.69 18.54 38.92 4.37
1397 1508 9.569074 TTAGCAATAATAGTATAGGGATCCCAA 57.431 33.333 32.69 14.78 38.92 4.12
1398 1509 8.644432 AGCAATAATAGTATAGGGATCCCAAT 57.356 34.615 32.69 15.76 38.92 3.16
1399 1510 9.744125 AGCAATAATAGTATAGGGATCCCAATA 57.256 33.333 32.69 17.55 38.92 1.90
1419 1530 9.209175 CCCAATAGTATATAACTCTGTGCTTTC 57.791 37.037 0.00 0.00 39.80 2.62
1484 1595 1.369091 GCGAGATCACCGCCATGTTT 61.369 55.000 18.04 0.00 46.22 2.83
1576 1687 0.413037 TGTTGGGATGGGGCTCATTT 59.587 50.000 0.00 0.00 35.97 2.32
1624 1739 5.352293 TGAGTATGCTGTTGCTTTCTATGTG 59.648 40.000 0.00 0.00 40.48 3.21
1675 1806 5.511025 GCTTTCAGCGTTACTACTAGTGTAC 59.489 44.000 5.39 0.00 0.00 2.90
1760 1891 4.857933 ACCCACCAAGCCTGGATATAATAT 59.142 41.667 8.77 0.00 46.92 1.28
1855 1986 4.260985 TCGGGCCATGCATATAACATTAG 58.739 43.478 4.39 0.00 0.00 1.73
1932 2067 5.174037 AGTCCAATAAACCGGAAATGAGA 57.826 39.130 9.46 0.00 31.67 3.27
1966 2104 4.199310 CCCAATGTGACCTATGATTCGTT 58.801 43.478 0.00 0.00 0.00 3.85
2033 2171 3.686916 ACTAGACTGCCTCCTTTTGTC 57.313 47.619 0.00 0.00 0.00 3.18
2350 2493 8.423906 TCTTACTTGGATAATCATCTACTCCC 57.576 38.462 0.00 0.00 0.00 4.30
2351 2494 8.235230 TCTTACTTGGATAATCATCTACTCCCT 58.765 37.037 0.00 0.00 0.00 4.20
2352 2495 6.926630 ACTTGGATAATCATCTACTCCCTC 57.073 41.667 0.00 0.00 0.00 4.30
2353 2496 6.629156 ACTTGGATAATCATCTACTCCCTCT 58.371 40.000 0.00 0.00 0.00 3.69
2354 2497 6.496565 ACTTGGATAATCATCTACTCCCTCTG 59.503 42.308 0.00 0.00 0.00 3.35
2355 2498 5.970289 TGGATAATCATCTACTCCCTCTGT 58.030 41.667 0.00 0.00 0.00 3.41
2356 2499 6.013379 TGGATAATCATCTACTCCCTCTGTC 58.987 44.000 0.00 0.00 0.00 3.51
2357 2500 6.183361 TGGATAATCATCTACTCCCTCTGTCT 60.183 42.308 0.00 0.00 0.00 3.41
2358 2501 6.377146 GGATAATCATCTACTCCCTCTGTCTC 59.623 46.154 0.00 0.00 0.00 3.36
2359 2502 4.805140 ATCATCTACTCCCTCTGTCTCA 57.195 45.455 0.00 0.00 0.00 3.27
2360 2503 4.805140 TCATCTACTCCCTCTGTCTCAT 57.195 45.455 0.00 0.00 0.00 2.90
2361 2504 5.913946 TCATCTACTCCCTCTGTCTCATA 57.086 43.478 0.00 0.00 0.00 2.15
2362 2505 6.267492 TCATCTACTCCCTCTGTCTCATAA 57.733 41.667 0.00 0.00 0.00 1.90
2363 2506 6.857848 TCATCTACTCCCTCTGTCTCATAAT 58.142 40.000 0.00 0.00 0.00 1.28
2364 2507 7.990055 TCATCTACTCCCTCTGTCTCATAATA 58.010 38.462 0.00 0.00 0.00 0.98
2365 2508 8.619281 TCATCTACTCCCTCTGTCTCATAATAT 58.381 37.037 0.00 0.00 0.00 1.28
2366 2509 9.913310 CATCTACTCCCTCTGTCTCATAATATA 57.087 37.037 0.00 0.00 0.00 0.86
2368 2511 9.967451 TCTACTCCCTCTGTCTCATAATATAAG 57.033 37.037 0.00 0.00 0.00 1.73
2369 2512 9.967451 CTACTCCCTCTGTCTCATAATATAAGA 57.033 37.037 0.00 0.00 0.00 2.10
2371 2514 9.084533 ACTCCCTCTGTCTCATAATATAAGAAC 57.915 37.037 0.00 0.00 0.00 3.01
2372 2515 8.112016 TCCCTCTGTCTCATAATATAAGAACG 57.888 38.462 0.00 0.00 0.00 3.95
2373 2516 7.724506 TCCCTCTGTCTCATAATATAAGAACGT 59.275 37.037 0.00 0.00 0.00 3.99
2374 2517 8.361139 CCCTCTGTCTCATAATATAAGAACGTT 58.639 37.037 0.00 0.00 0.00 3.99
2375 2518 9.751542 CCTCTGTCTCATAATATAAGAACGTTT 57.248 33.333 0.46 0.00 0.00 3.60
2393 2536 9.485206 AGAACGTTTTTGATATTAGTGTAGTGT 57.515 29.630 0.46 0.00 0.00 3.55
2421 2564 7.989416 AAACGTTCTTATATTTTGGGACAGA 57.011 32.000 0.00 0.00 42.39 3.41
2422 2565 7.611213 AACGTTCTTATATTTTGGGACAGAG 57.389 36.000 0.00 0.00 42.39 3.35
2423 2566 6.113411 ACGTTCTTATATTTTGGGACAGAGG 58.887 40.000 0.00 0.00 42.39 3.69
2424 2567 5.527582 CGTTCTTATATTTTGGGACAGAGGG 59.472 44.000 0.00 0.00 42.39 4.30
2425 2568 6.631766 CGTTCTTATATTTTGGGACAGAGGGA 60.632 42.308 0.00 0.00 42.39 4.20
2426 2569 6.500589 TCTTATATTTTGGGACAGAGGGAG 57.499 41.667 0.00 0.00 42.39 4.30
2427 2570 5.970640 TCTTATATTTTGGGACAGAGGGAGT 59.029 40.000 0.00 0.00 42.39 3.85
2428 2571 7.136885 TCTTATATTTTGGGACAGAGGGAGTA 58.863 38.462 0.00 0.00 42.39 2.59
2429 2572 5.632034 ATATTTTGGGACAGAGGGAGTAC 57.368 43.478 0.00 0.00 42.39 2.73
2430 2573 2.409064 TTTGGGACAGAGGGAGTACA 57.591 50.000 0.00 0.00 42.39 2.90
2646 2790 5.186996 ACCAACTCATAAGTTTTGCAGTG 57.813 39.130 0.00 0.00 43.28 3.66
2882 3027 2.230266 CCAAATACAGAAAACACCCGGG 59.770 50.000 22.25 22.25 0.00 5.73
3000 3145 1.823899 GAGCCCCGCGGAAATCAAT 60.824 57.895 30.73 4.50 0.00 2.57
3070 3215 2.092103 ACCAGCCAGTTTTGGTCTGTAA 60.092 45.455 13.21 0.00 44.16 2.41
3120 3271 0.725784 CGTCGCGCTTCTTTTGCATT 60.726 50.000 5.56 0.00 0.00 3.56
3362 3516 8.566260 GCTTCTATTGATCTAACAGCAATGAAT 58.434 33.333 0.00 0.00 34.41 2.57
3399 3553 6.747280 CAGGGCTATTACAAATTGTCGAAAAG 59.253 38.462 0.22 0.00 0.00 2.27
3432 3586 9.923143 CAATATGAGCATGATTTATCACCAAAT 57.077 29.630 0.00 0.00 40.03 2.32
3520 3674 1.660607 CACACATCGATTTGGTCCTCG 59.339 52.381 15.58 0.00 36.25 4.63
3552 3706 2.137523 CCAGGCAAGTGAAAATGTTGC 58.862 47.619 0.00 0.00 44.79 4.17
3554 3708 2.540931 CAGGCAAGTGAAAATGTTGCAC 59.459 45.455 8.41 0.00 46.86 4.57
3709 3863 3.659786 CGACCTTCATGTTACAGTTCCA 58.340 45.455 0.00 0.00 0.00 3.53
3763 3917 7.144234 TCTTAGCTTATTAATTACCCTGGCA 57.856 36.000 0.00 0.00 0.00 4.92
4115 4272 4.584325 TGCCTTTGCTTTCAGTATGTTTCT 59.416 37.500 0.00 0.00 38.71 2.52
4209 4366 7.147312 TCAAACATATGGAGTGCAAGAAAAAG 58.853 34.615 7.80 0.00 0.00 2.27
4210 4367 6.655078 AACATATGGAGTGCAAGAAAAAGT 57.345 33.333 7.80 0.00 0.00 2.66
4526 6568 4.923264 GGTTACAACCTTTTCTAGAGCG 57.077 45.455 3.80 0.00 45.75 5.03
4719 6761 3.674997 TGTTTCTTGCCAGGTACTCATC 58.325 45.455 0.00 0.00 34.60 2.92
4741 6783 1.780503 AATGGTGCTGCCTAAATCCC 58.219 50.000 0.00 0.00 38.35 3.85
4993 7035 9.451002 TGTTTTCATTTCAATATTCATGCCAAT 57.549 25.926 0.00 0.00 0.00 3.16
5002 7044 8.467963 TCAATATTCATGCCAATCACTGTATT 57.532 30.769 0.00 0.00 0.00 1.89
5329 7389 2.925706 TCCGTGGCCTTGCTGGTA 60.926 61.111 3.32 0.00 38.35 3.25
5676 7736 2.631160 TGACATAACCATTAGGGGCG 57.369 50.000 0.00 0.00 42.91 6.13
5688 7748 0.772384 TAGGGGCGGGTTCTGAAAAA 59.228 50.000 0.00 0.00 0.00 1.94
5814 7878 2.867624 ACATGCTCAGTTTCACCACAT 58.132 42.857 0.00 0.00 0.00 3.21
5852 7916 6.349280 GCAAACACCTAATTTAGCACATCAGA 60.349 38.462 0.00 0.00 0.00 3.27
5893 7957 7.744715 GTGTGCTCACATGTACAAAAATAGTAC 59.255 37.037 13.83 4.95 43.97 2.73
5894 7958 7.659799 TGTGCTCACATGTACAAAAATAGTACT 59.340 33.333 0.00 0.00 38.48 2.73
5895 7959 8.169268 GTGCTCACATGTACAAAAATAGTACTC 58.831 37.037 0.00 0.00 41.76 2.59
5896 7960 7.333423 TGCTCACATGTACAAAAATAGTACTCC 59.667 37.037 0.00 0.00 41.76 3.85
5897 7961 7.201617 GCTCACATGTACAAAAATAGTACTCCC 60.202 40.741 0.00 0.00 41.76 4.30
5898 7962 7.913789 TCACATGTACAAAAATAGTACTCCCT 58.086 34.615 0.00 0.00 41.76 4.20
5899 7963 8.038944 TCACATGTACAAAAATAGTACTCCCTC 58.961 37.037 0.00 0.00 41.76 4.30
5900 7964 7.280205 CACATGTACAAAAATAGTACTCCCTCC 59.720 40.741 0.00 0.00 41.76 4.30
5901 7965 5.969423 TGTACAAAAATAGTACTCCCTCCG 58.031 41.667 0.00 0.00 41.76 4.63
5902 7966 5.481473 TGTACAAAAATAGTACTCCCTCCGT 59.519 40.000 0.00 0.00 41.76 4.69
5903 7967 5.082251 ACAAAAATAGTACTCCCTCCGTC 57.918 43.478 0.00 0.00 0.00 4.79
5904 7968 4.081254 ACAAAAATAGTACTCCCTCCGTCC 60.081 45.833 0.00 0.00 0.00 4.79
5905 7969 1.978454 AATAGTACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
5906 7970 1.135094 ATAGTACTCCCTCCGTCCGA 58.865 55.000 0.00 0.00 0.00 4.55
5907 7971 0.467384 TAGTACTCCCTCCGTCCGAG 59.533 60.000 0.00 0.00 38.46 4.63
5908 7972 1.222936 GTACTCCCTCCGTCCGAGA 59.777 63.158 0.00 0.00 41.63 4.04
5909 7973 0.393537 GTACTCCCTCCGTCCGAGAA 60.394 60.000 0.00 0.00 41.63 2.87
5910 7974 0.329261 TACTCCCTCCGTCCGAGAAA 59.671 55.000 0.00 0.00 41.63 2.52
5911 7975 0.966370 ACTCCCTCCGTCCGAGAAAG 60.966 60.000 0.00 0.00 41.63 2.62
5912 7976 2.184579 CCCTCCGTCCGAGAAAGC 59.815 66.667 0.00 0.00 41.63 3.51
5913 7977 2.352032 CCCTCCGTCCGAGAAAGCT 61.352 63.158 0.00 0.00 41.63 3.74
5914 7978 1.592223 CCTCCGTCCGAGAAAGCTT 59.408 57.895 0.00 0.00 41.63 3.74
5915 7979 0.737715 CCTCCGTCCGAGAAAGCTTG 60.738 60.000 0.00 0.00 41.63 4.01
5916 7980 0.038159 CTCCGTCCGAGAAAGCTTGT 60.038 55.000 0.00 0.00 41.63 3.16
5917 7981 0.038526 TCCGTCCGAGAAAGCTTGTC 60.039 55.000 0.00 0.00 0.00 3.18
5918 7982 1.014564 CCGTCCGAGAAAGCTTGTCC 61.015 60.000 0.00 0.00 0.00 4.02
5919 7983 1.014564 CGTCCGAGAAAGCTTGTCCC 61.015 60.000 0.00 0.00 0.00 4.46
5920 7984 0.034896 GTCCGAGAAAGCTTGTCCCA 59.965 55.000 0.00 0.00 0.00 4.37
5921 7985 0.762418 TCCGAGAAAGCTTGTCCCAA 59.238 50.000 0.00 0.00 0.00 4.12
5922 7986 1.160137 CCGAGAAAGCTTGTCCCAAG 58.840 55.000 0.00 0.00 0.00 3.61
5923 7987 0.519077 CGAGAAAGCTTGTCCCAAGC 59.481 55.000 18.69 18.69 43.31 4.01
5929 7993 1.959848 GCTTGTCCCAAGCTTGTCC 59.040 57.895 24.35 12.15 40.01 4.02
5930 7994 1.527433 GCTTGTCCCAAGCTTGTCCC 61.527 60.000 24.35 11.81 40.01 4.46
5931 7995 0.111253 CTTGTCCCAAGCTTGTCCCT 59.889 55.000 24.35 0.00 0.00 4.20
5932 7996 0.110486 TTGTCCCAAGCTTGTCCCTC 59.890 55.000 24.35 10.65 0.00 4.30
5933 7997 1.059584 TGTCCCAAGCTTGTCCCTCA 61.060 55.000 24.35 12.85 0.00 3.86
5934 7998 0.110486 GTCCCAAGCTTGTCCCTCAA 59.890 55.000 24.35 0.00 34.61 3.02
5935 7999 0.850100 TCCCAAGCTTGTCCCTCAAA 59.150 50.000 24.35 0.00 35.48 2.69
5936 8000 1.428912 TCCCAAGCTTGTCCCTCAAAT 59.571 47.619 24.35 0.00 35.48 2.32
5937 8001 1.547372 CCCAAGCTTGTCCCTCAAATG 59.453 52.381 24.35 5.47 35.48 2.32
5938 8002 1.547372 CCAAGCTTGTCCCTCAAATGG 59.453 52.381 24.35 1.81 35.48 3.16
5939 8003 2.517959 CAAGCTTGTCCCTCAAATGGA 58.482 47.619 18.65 0.00 35.48 3.41
5940 8004 3.094572 CAAGCTTGTCCCTCAAATGGAT 58.905 45.455 18.65 0.00 35.48 3.41
5941 8005 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
5942 8006 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
5943 8007 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
5944 8008 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
5945 8009 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
5946 8010 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
5947 8011 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
5948 8012 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
5949 8013 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
5950 8014 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
5951 8015 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
5952 8016 5.221803 CCCTCAAATGGATGTATCTAGCACT 60.222 44.000 0.00 0.00 0.00 4.40
5953 8017 6.014242 CCCTCAAATGGATGTATCTAGCACTA 60.014 42.308 0.00 0.00 0.00 2.74
5954 8018 7.445121 CCTCAAATGGATGTATCTAGCACTAA 58.555 38.462 0.00 0.00 0.00 2.24
5955 8019 7.386299 CCTCAAATGGATGTATCTAGCACTAAC 59.614 40.741 0.00 0.00 0.00 2.34
5956 8020 8.023021 TCAAATGGATGTATCTAGCACTAACT 57.977 34.615 0.00 0.00 0.00 2.24
5957 8021 8.486210 TCAAATGGATGTATCTAGCACTAACTT 58.514 33.333 0.00 0.00 0.00 2.66
5958 8022 8.554528 CAAATGGATGTATCTAGCACTAACTTG 58.445 37.037 0.00 0.00 0.00 3.16
5959 8023 6.161855 TGGATGTATCTAGCACTAACTTGG 57.838 41.667 0.00 0.00 0.00 3.61
5960 8024 5.661312 TGGATGTATCTAGCACTAACTTGGT 59.339 40.000 0.00 0.00 0.00 3.67
5961 8025 5.986135 GGATGTATCTAGCACTAACTTGGTG 59.014 44.000 0.97 0.97 37.70 4.17
5962 8026 5.995565 TGTATCTAGCACTAACTTGGTGT 57.004 39.130 7.08 0.00 37.07 4.16
5963 8027 6.354794 TGTATCTAGCACTAACTTGGTGTT 57.645 37.500 7.08 3.82 42.31 3.32
5964 8028 7.470935 TGTATCTAGCACTAACTTGGTGTTA 57.529 36.000 7.08 4.74 39.89 2.41
5978 8042 7.630242 ACTTGGTGTTAGATACATCCATTTG 57.370 36.000 0.00 0.00 37.04 2.32
5979 8043 7.402054 ACTTGGTGTTAGATACATCCATTTGA 58.598 34.615 0.00 0.00 37.04 2.69
5980 8044 7.554118 ACTTGGTGTTAGATACATCCATTTGAG 59.446 37.037 0.00 0.00 37.04 3.02
5981 8045 6.356556 TGGTGTTAGATACATCCATTTGAGG 58.643 40.000 0.00 0.00 37.04 3.86
5982 8046 5.765182 GGTGTTAGATACATCCATTTGAGGG 59.235 44.000 0.00 0.00 39.39 4.30
5983 8047 6.409234 GGTGTTAGATACATCCATTTGAGGGA 60.409 42.308 0.00 0.00 39.39 4.20
5984 8048 6.483640 GTGTTAGATACATCCATTTGAGGGAC 59.516 42.308 0.00 0.00 39.39 4.46
5985 8049 6.157820 TGTTAGATACATCCATTTGAGGGACA 59.842 38.462 0.00 0.00 37.23 4.02
5986 8050 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
5987 8051 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
5988 8052 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
5989 8053 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
5990 8054 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
5991 8055 3.243359 TCCATTTGAGGGACAAGCTTT 57.757 42.857 0.00 0.00 39.77 3.51
5992 8056 3.575805 TCCATTTGAGGGACAAGCTTTT 58.424 40.909 0.00 0.00 39.77 2.27
5993 8057 3.966665 TCCATTTGAGGGACAAGCTTTTT 59.033 39.130 0.00 0.00 39.77 1.94
5994 8058 4.039124 TCCATTTGAGGGACAAGCTTTTTC 59.961 41.667 0.00 0.00 39.77 2.29
5995 8059 3.708563 TTTGAGGGACAAGCTTTTTCG 57.291 42.857 0.00 0.00 39.77 3.46
5996 8060 1.604604 TGAGGGACAAGCTTTTTCGG 58.395 50.000 0.00 0.00 0.00 4.30
5997 8061 1.142060 TGAGGGACAAGCTTTTTCGGA 59.858 47.619 0.00 0.00 0.00 4.55
5998 8062 1.535896 GAGGGACAAGCTTTTTCGGAC 59.464 52.381 0.00 0.00 0.00 4.79
5999 8063 1.133915 AGGGACAAGCTTTTTCGGACA 60.134 47.619 0.00 0.00 0.00 4.02
6000 8064 1.266989 GGGACAAGCTTTTTCGGACAG 59.733 52.381 0.00 0.00 0.00 3.51
6001 8065 2.218603 GGACAAGCTTTTTCGGACAGA 58.781 47.619 0.00 0.00 0.00 3.41
6002 8066 2.224314 GGACAAGCTTTTTCGGACAGAG 59.776 50.000 0.00 0.00 0.00 3.35
6003 8067 2.222027 ACAAGCTTTTTCGGACAGAGG 58.778 47.619 0.00 0.00 0.00 3.69
6004 8068 1.537202 CAAGCTTTTTCGGACAGAGGG 59.463 52.381 0.00 0.00 0.00 4.30
6005 8069 1.056660 AGCTTTTTCGGACAGAGGGA 58.943 50.000 0.00 0.00 0.00 4.20
6006 8070 1.002544 AGCTTTTTCGGACAGAGGGAG 59.997 52.381 0.00 0.00 0.00 4.30
6007 8071 1.443802 CTTTTTCGGACAGAGGGAGC 58.556 55.000 0.00 0.00 0.00 4.70
6008 8072 0.762418 TTTTTCGGACAGAGGGAGCA 59.238 50.000 0.00 0.00 0.00 4.26
6022 8086 1.521580 GGAGCATGATCAAGGCTAGC 58.478 55.000 21.10 6.04 38.15 3.42
6049 8113 4.657814 ACAAGTATTCCACAAGGACCAT 57.342 40.909 0.00 0.00 45.73 3.55
6066 8137 4.819630 GGACCATGACTTAAAACACAGACA 59.180 41.667 0.00 0.00 0.00 3.41
6104 8175 8.977267 TCTCAGAGTTATAGTAGACTTTACCC 57.023 38.462 0.00 0.00 0.00 3.69
6455 8529 3.872696 CCAGTTTTTGGCCAAAAAGACT 58.127 40.909 42.59 36.07 46.91 3.24
6681 8756 6.374578 GCAAAGACTAAGAAACCTGTCAATC 58.625 40.000 0.00 0.00 32.41 2.67
6713 8788 1.078115 AACCGGGACATAAACCCCTT 58.922 50.000 6.32 0.00 44.09 3.95
6752 8827 2.891941 TTGGCGCCAAGCTCCATAGG 62.892 60.000 37.30 0.00 43.19 2.57
6802 8877 3.429410 CGCTCATGACTACATCCAACTCA 60.429 47.826 0.00 0.00 34.15 3.41
7158 9241 4.644685 GCAGATTTTGGGGAAAGCTATACA 59.355 41.667 0.00 0.00 41.79 2.29
7163 9246 6.987403 TTTTGGGGAAAGCTATACAAAGTT 57.013 33.333 0.00 0.00 0.00 2.66
7325 9408 4.757149 AGTGTTCTGATCTTACCTTTGTGC 59.243 41.667 0.00 0.00 0.00 4.57
7326 9409 3.745975 TGTTCTGATCTTACCTTTGTGCG 59.254 43.478 0.00 0.00 0.00 5.34
7332 9415 2.778299 TCTTACCTTTGTGCGATTGCT 58.222 42.857 6.47 0.00 43.34 3.91
7368 9451 9.985730 TCTTTTTCATTCTGCTGTGAATATTTT 57.014 25.926 0.00 0.00 35.18 1.82
7444 9527 3.340034 TGCTATTGTTCCCAAAGTACCG 58.660 45.455 0.00 0.00 33.44 4.02
7510 9593 3.125316 GGATGAACAATGTTCTGACGGAC 59.875 47.826 24.30 9.39 0.00 4.79
7526 9609 0.178068 GGACAGGGAGAGCGCAAATA 59.822 55.000 11.47 0.00 0.00 1.40
7837 9920 9.161629 TGAATGTACATGTTACTTACTCATTGG 57.838 33.333 9.63 0.00 0.00 3.16
7959 10053 2.256117 ACCTAAAGTGACAGGTGCAC 57.744 50.000 8.80 8.80 43.64 4.57
7962 10056 1.873591 CTAAAGTGACAGGTGCACCAC 59.126 52.381 36.39 25.08 38.89 4.16
8031 10126 8.288689 ACTGGCTACCAACGATTTTATTTATT 57.711 30.769 0.00 0.00 30.80 1.40
8067 10162 0.967380 AGGTGTGCCCTTAAGCATGC 60.967 55.000 10.51 10.51 42.73 4.06
8078 10173 0.318441 TAAGCATGCCTAGGCGCTAG 59.682 55.000 29.38 19.59 45.51 3.42
8118 10220 1.198713 CTTGAGGGCTCTAGGCAGAA 58.801 55.000 5.85 0.00 44.01 3.02
8304 10435 1.867233 CTTCCACTGTTCCACACTTCG 59.133 52.381 0.00 0.00 0.00 3.79
8317 10448 4.039973 TCCACACTTCGACATTTCTACCTT 59.960 41.667 0.00 0.00 0.00 3.50
8331 10462 9.220906 ACATTTCTACCTTATTACATGGACCTA 57.779 33.333 0.00 0.00 0.00 3.08
8345 10476 7.979444 ACATGGACCTATTTATGATTTACGG 57.021 36.000 0.00 0.00 0.00 4.02
8346 10477 6.430000 ACATGGACCTATTTATGATTTACGGC 59.570 38.462 0.00 0.00 0.00 5.68
8370 10509 3.067091 CTGTGGTCTCAGCAGCCT 58.933 61.111 0.00 0.00 0.00 4.58
8457 10663 1.359130 AGCCACTGGAAAATAAGGGCT 59.641 47.619 0.00 0.00 44.92 5.19
8463 10669 3.244770 ACTGGAAAATAAGGGCTCAACGA 60.245 43.478 0.00 0.00 0.00 3.85
8503 10710 8.784043 ACCAGAATATAACTCAAGTTTGTGAAC 58.216 33.333 0.00 0.00 39.31 3.18
8518 10725 6.605594 AGTTTGTGAACACAGGAAAATAAGGA 59.394 34.615 7.67 0.00 42.94 3.36
8525 10732 5.690865 ACACAGGAAAATAAGGACTCAACA 58.309 37.500 0.00 0.00 0.00 3.33
8607 10814 7.935338 CCAACAAGATTAATATTGGCATGAC 57.065 36.000 22.97 0.00 33.87 3.06
8608 10815 7.490840 CCAACAAGATTAATATTGGCATGACA 58.509 34.615 22.97 0.00 33.87 3.58
8609 10816 8.145767 CCAACAAGATTAATATTGGCATGACAT 58.854 33.333 22.97 0.00 33.87 3.06
8610 10817 8.974408 CAACAAGATTAATATTGGCATGACATG 58.026 33.333 22.97 11.27 33.54 3.21
8669 10877 2.775490 TAAGATAGAGCCCAGGCAGA 57.225 50.000 12.03 0.00 44.88 4.26
8670 10878 1.422531 AAGATAGAGCCCAGGCAGAG 58.577 55.000 12.03 0.00 44.88 3.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 4.000988 ACGTAATCAAGTCCACACAATCC 58.999 43.478 0.00 0.00 0.00 3.01
45 46 8.624367 TCTTCTTTCCCAATTAACGTAATCAA 57.376 30.769 0.00 0.00 0.00 2.57
114 115 2.175202 AGACAGGAGCGAAAGACATCT 58.825 47.619 0.00 0.00 0.00 2.90
123 124 1.178276 GAGAAGGAAGACAGGAGCGA 58.822 55.000 0.00 0.00 0.00 4.93
179 180 1.141053 GGATCATCCAACCTAACCGCT 59.859 52.381 0.00 0.00 36.28 5.52
221 222 3.306364 CGCGATAAATCAGGGAGAGGATT 60.306 47.826 0.00 0.00 35.34 3.01
248 249 3.506096 CCATGGCAGCTGACGCAG 61.506 66.667 20.43 8.44 39.10 5.18
268 290 1.875963 CCATGTCAGTGAAACCCGC 59.124 57.895 0.00 0.00 37.80 6.13
270 292 1.000274 GTTGCCATGTCAGTGAAACCC 60.000 52.381 0.00 0.00 37.80 4.11
271 293 1.680735 TGTTGCCATGTCAGTGAAACC 59.319 47.619 0.00 0.00 37.80 3.27
272 294 2.358898 AGTGTTGCCATGTCAGTGAAAC 59.641 45.455 0.00 0.00 0.00 2.78
276 298 0.877071 GGAGTGTTGCCATGTCAGTG 59.123 55.000 0.00 0.00 0.00 3.66
277 299 0.473755 TGGAGTGTTGCCATGTCAGT 59.526 50.000 0.00 0.00 0.00 3.41
280 302 3.319755 CAAAATGGAGTGTTGCCATGTC 58.680 45.455 0.00 0.00 45.11 3.06
281 303 2.548493 GCAAAATGGAGTGTTGCCATGT 60.548 45.455 0.00 0.00 45.11 3.21
284 306 3.984838 GCAAAATGGAGTGTTGCCA 57.015 47.368 0.00 0.00 41.41 4.92
286 308 1.142474 GCAGCAAAATGGAGTGTTGC 58.858 50.000 0.00 0.00 46.35 4.17
287 309 1.068895 TGGCAGCAAAATGGAGTGTTG 59.931 47.619 0.00 0.00 0.00 3.33
289 311 1.274167 CATGGCAGCAAAATGGAGTGT 59.726 47.619 0.00 0.00 0.00 3.55
290 312 1.546923 TCATGGCAGCAAAATGGAGTG 59.453 47.619 0.00 0.00 0.00 3.51
291 313 1.547372 GTCATGGCAGCAAAATGGAGT 59.453 47.619 0.00 0.00 0.00 3.85
292 314 1.546923 TGTCATGGCAGCAAAATGGAG 59.453 47.619 0.00 0.00 0.00 3.86
331 356 3.181483 GCAGAGGAAAATGTTGCTATGGG 60.181 47.826 12.97 0.00 42.71 4.00
353 378 0.460284 AACTCCGGCACAAGCGATAG 60.460 55.000 0.00 0.00 43.41 2.08
355 380 0.460284 CTAACTCCGGCACAAGCGAT 60.460 55.000 0.00 0.00 43.41 4.58
360 385 0.887387 GCAACCTAACTCCGGCACAA 60.887 55.000 0.00 0.00 0.00 3.33
393 418 1.014352 GTTGTCGCTTCCGCCATTAT 58.986 50.000 0.00 0.00 0.00 1.28
424 449 1.185315 CATGAAGGGCCGTCCATTTT 58.815 50.000 17.02 0.00 36.34 1.82
431 456 4.047125 CCCCACATGAAGGGCCGT 62.047 66.667 18.78 0.00 45.39 5.68
437 463 2.794103 TCATGAACACCCCACATGAAG 58.206 47.619 0.00 0.00 44.42 3.02
443 469 2.094545 GCTTCAATCATGAACACCCCAC 60.095 50.000 0.00 0.00 40.59 4.61
467 493 5.869753 ATCGTTTTCCAAAGAGTCTGATG 57.130 39.130 0.00 0.00 0.00 3.07
472 498 4.377124 GGTCGAATCGTTTTCCAAAGAGTC 60.377 45.833 1.52 0.00 33.68 3.36
494 520 4.641989 CCAAGTATCACTTCCTTCCAATGG 59.358 45.833 0.00 0.00 36.03 3.16
524 550 7.935338 ATCTGCAAAAATAACTTGTTGAGTG 57.065 32.000 0.00 0.00 39.00 3.51
554 580 5.423704 TCCCAATTAACGTAATCAGGTCA 57.576 39.130 0.00 0.00 0.00 4.02
585 611 8.588290 TGCCTACCAATATTATGAACAACTTT 57.412 30.769 0.00 0.00 0.00 2.66
616 642 4.837860 AGCTTCATGGACCCAATTACAAAA 59.162 37.500 0.00 0.00 0.00 2.44
617 643 4.415596 AGCTTCATGGACCCAATTACAAA 58.584 39.130 0.00 0.00 0.00 2.83
645 671 7.591057 TCGTCAATCAGTTTGCTCAAAATAAAG 59.409 33.333 0.00 0.00 35.16 1.85
750 776 6.542370 CCCATCGAGTATTAGTGGATGTTTTT 59.458 38.462 17.26 0.00 33.55 1.94
751 777 6.055588 CCCATCGAGTATTAGTGGATGTTTT 58.944 40.000 17.26 0.00 33.55 2.43
752 778 5.611374 CCCATCGAGTATTAGTGGATGTTT 58.389 41.667 17.26 0.00 33.55 2.83
754 780 3.006967 GCCCATCGAGTATTAGTGGATGT 59.993 47.826 17.26 0.00 33.55 3.06
755 781 3.259374 AGCCCATCGAGTATTAGTGGATG 59.741 47.826 13.67 13.67 34.69 3.51
757 783 2.958818 AGCCCATCGAGTATTAGTGGA 58.041 47.619 0.48 0.00 31.59 4.02
758 784 3.069586 TGAAGCCCATCGAGTATTAGTGG 59.930 47.826 0.00 0.00 0.00 4.00
759 785 4.322080 TGAAGCCCATCGAGTATTAGTG 57.678 45.455 0.00 0.00 0.00 2.74
760 786 4.649674 TCTTGAAGCCCATCGAGTATTAGT 59.350 41.667 0.00 0.00 33.32 2.24
761 787 5.201713 TCTTGAAGCCCATCGAGTATTAG 57.798 43.478 0.00 0.00 33.32 1.73
763 789 4.487714 TTCTTGAAGCCCATCGAGTATT 57.512 40.909 0.00 0.00 33.32 1.89
764 790 4.487714 TTTCTTGAAGCCCATCGAGTAT 57.512 40.909 0.00 0.00 33.32 2.12
765 791 3.973206 TTTCTTGAAGCCCATCGAGTA 57.027 42.857 0.00 0.00 33.32 2.59
766 792 2.859165 TTTCTTGAAGCCCATCGAGT 57.141 45.000 0.00 0.00 33.32 4.18
767 793 3.753272 TCTTTTTCTTGAAGCCCATCGAG 59.247 43.478 0.00 0.00 32.90 4.04
769 795 3.119708 CCTCTTTTTCTTGAAGCCCATCG 60.120 47.826 0.00 0.00 0.00 3.84
770 796 4.082125 TCCTCTTTTTCTTGAAGCCCATC 58.918 43.478 0.00 0.00 0.00 3.51
776 802 9.645059 ACTTTCTTTTTCCTCTTTTTCTTGAAG 57.355 29.630 0.00 0.00 0.00 3.02
837 941 1.452108 GATGCACTCCCGGGGAAAG 60.452 63.158 23.50 14.00 0.00 2.62
846 951 1.202510 AGATCAAGAGCGATGCACTCC 60.203 52.381 0.00 0.00 34.56 3.85
902 1007 3.480133 GTGGAGGGGATGGGACGG 61.480 72.222 0.00 0.00 0.00 4.79
940 1045 5.707764 GGAGTTACTTGAAGAAGGAAAGCAT 59.292 40.000 0.00 0.00 33.56 3.79
942 1047 5.309638 AGGAGTTACTTGAAGAAGGAAAGC 58.690 41.667 0.00 0.00 33.56 3.51
984 1089 1.607628 GACATTGCTGGAGATGATGCC 59.392 52.381 0.00 0.00 0.00 4.40
1221 1332 1.991121 AGTAGTCCTTGACGGTCACA 58.009 50.000 10.97 1.83 37.67 3.58
1335 1446 0.321387 CTGGCAAGAAGAGCAGCAGA 60.321 55.000 0.00 0.00 0.00 4.26
1388 1499 8.478877 CACAGAGTTATATACTATTGGGATCCC 58.521 40.741 25.22 25.22 37.17 3.85
1389 1500 7.982354 GCACAGAGTTATATACTATTGGGATCC 59.018 40.741 1.92 1.92 37.17 3.36
1390 1501 8.754080 AGCACAGAGTTATATACTATTGGGATC 58.246 37.037 0.00 0.00 37.17 3.36
1391 1502 8.671987 AGCACAGAGTTATATACTATTGGGAT 57.328 34.615 0.00 0.00 37.17 3.85
1392 1503 8.492415 AAGCACAGAGTTATATACTATTGGGA 57.508 34.615 0.00 0.00 37.17 4.37
1393 1504 9.209175 GAAAGCACAGAGTTATATACTATTGGG 57.791 37.037 0.00 0.00 37.17 4.12
1394 1505 9.988815 AGAAAGCACAGAGTTATATACTATTGG 57.011 33.333 0.00 0.00 37.17 3.16
1396 1507 9.482627 GCAGAAAGCACAGAGTTATATACTATT 57.517 33.333 0.00 0.00 44.79 1.73
1397 1508 7.810282 CGCAGAAAGCACAGAGTTATATACTAT 59.190 37.037 0.00 0.00 46.13 2.12
1398 1509 7.139392 CGCAGAAAGCACAGAGTTATATACTA 58.861 38.462 0.00 0.00 46.13 1.82
1399 1510 5.980116 CGCAGAAAGCACAGAGTTATATACT 59.020 40.000 0.00 0.00 46.13 2.12
1400 1511 5.332656 GCGCAGAAAGCACAGAGTTATATAC 60.333 44.000 0.30 0.00 46.13 1.47
1401 1512 4.745125 GCGCAGAAAGCACAGAGTTATATA 59.255 41.667 0.30 0.00 46.13 0.86
1402 1513 3.557595 GCGCAGAAAGCACAGAGTTATAT 59.442 43.478 0.30 0.00 46.13 0.86
1403 1514 2.930040 GCGCAGAAAGCACAGAGTTATA 59.070 45.455 0.30 0.00 46.13 0.98
1504 1615 1.680338 ACAGAAGCAAACTGACCACC 58.320 50.000 10.78 0.00 38.55 4.61
1576 1687 1.110442 CCCAAAGACTTGTGGTGCAA 58.890 50.000 12.51 0.00 32.60 4.08
1709 1840 0.826062 CCCTATTGCTTTGGCCTTGG 59.174 55.000 3.32 0.00 37.74 3.61
1814 1945 5.221461 GCCCGAATATAGGTCTTCTGAAAGA 60.221 44.000 0.00 0.00 44.68 2.52
1819 1950 2.632996 TGGCCCGAATATAGGTCTTCTG 59.367 50.000 0.00 0.00 0.00 3.02
1833 1964 2.877097 ATGTTATATGCATGGCCCGA 57.123 45.000 10.16 0.00 0.00 5.14
1855 1986 7.834803 ACCTACTTAAGTACTGGACAACATAC 58.165 38.462 21.75 0.00 0.00 2.39
1932 2067 4.385310 GGTCACATTGGGTAGGCTTATTCT 60.385 45.833 0.00 0.00 0.00 2.40
2347 2490 7.724506 ACGTTCTTATATTATGAGACAGAGGGA 59.275 37.037 0.00 0.00 0.00 4.20
2348 2491 7.887381 ACGTTCTTATATTATGAGACAGAGGG 58.113 38.462 0.00 0.00 0.00 4.30
2349 2492 9.751542 AAACGTTCTTATATTATGAGACAGAGG 57.248 33.333 0.00 0.00 0.00 3.69
2367 2510 9.485206 ACACTACACTAATATCAAAAACGTTCT 57.515 29.630 0.00 0.00 0.00 3.01
2395 2538 8.852135 TCTGTCCCAAAATATAAGAACGTTTTT 58.148 29.630 9.22 9.22 0.00 1.94
2396 2539 8.398878 TCTGTCCCAAAATATAAGAACGTTTT 57.601 30.769 0.46 0.00 0.00 2.43
2397 2540 7.120726 CCTCTGTCCCAAAATATAAGAACGTTT 59.879 37.037 0.46 0.00 0.00 3.60
2398 2541 6.598064 CCTCTGTCCCAAAATATAAGAACGTT 59.402 38.462 0.00 0.00 0.00 3.99
2399 2542 6.113411 CCTCTGTCCCAAAATATAAGAACGT 58.887 40.000 0.00 0.00 0.00 3.99
2400 2543 5.527582 CCCTCTGTCCCAAAATATAAGAACG 59.472 44.000 0.00 0.00 0.00 3.95
2401 2544 6.659824 TCCCTCTGTCCCAAAATATAAGAAC 58.340 40.000 0.00 0.00 0.00 3.01
2402 2545 6.447084 ACTCCCTCTGTCCCAAAATATAAGAA 59.553 38.462 0.00 0.00 0.00 2.52
2403 2546 5.970640 ACTCCCTCTGTCCCAAAATATAAGA 59.029 40.000 0.00 0.00 0.00 2.10
2404 2547 6.253946 ACTCCCTCTGTCCCAAAATATAAG 57.746 41.667 0.00 0.00 0.00 1.73
2405 2548 6.674861 TGTACTCCCTCTGTCCCAAAATATAA 59.325 38.462 0.00 0.00 0.00 0.98
2406 2549 6.206787 TGTACTCCCTCTGTCCCAAAATATA 58.793 40.000 0.00 0.00 0.00 0.86
2407 2550 5.036916 TGTACTCCCTCTGTCCCAAAATAT 58.963 41.667 0.00 0.00 0.00 1.28
2408 2551 4.431378 TGTACTCCCTCTGTCCCAAAATA 58.569 43.478 0.00 0.00 0.00 1.40
2409 2552 3.256704 TGTACTCCCTCTGTCCCAAAAT 58.743 45.455 0.00 0.00 0.00 1.82
2410 2553 2.696775 TGTACTCCCTCTGTCCCAAAA 58.303 47.619 0.00 0.00 0.00 2.44
2411 2554 2.409064 TGTACTCCCTCTGTCCCAAA 57.591 50.000 0.00 0.00 0.00 3.28
2412 2555 2.642171 ATGTACTCCCTCTGTCCCAA 57.358 50.000 0.00 0.00 0.00 4.12
2413 2556 2.358932 GGTATGTACTCCCTCTGTCCCA 60.359 54.545 0.00 0.00 0.00 4.37
2414 2557 2.317973 GGTATGTACTCCCTCTGTCCC 58.682 57.143 0.00 0.00 0.00 4.46
2415 2558 3.028094 TGGTATGTACTCCCTCTGTCC 57.972 52.381 0.00 0.00 0.00 4.02
2416 2559 4.024670 AGTTGGTATGTACTCCCTCTGTC 58.975 47.826 0.00 0.00 0.00 3.51
2417 2560 4.062490 AGTTGGTATGTACTCCCTCTGT 57.938 45.455 0.00 0.00 0.00 3.41
2418 2561 5.422214 AAAGTTGGTATGTACTCCCTCTG 57.578 43.478 0.00 0.00 0.00 3.35
2419 2562 5.785940 AGAAAAGTTGGTATGTACTCCCTCT 59.214 40.000 0.00 0.00 0.00 3.69
2420 2563 6.051179 AGAAAAGTTGGTATGTACTCCCTC 57.949 41.667 0.00 0.00 0.00 4.30
2421 2564 5.785940 AGAGAAAAGTTGGTATGTACTCCCT 59.214 40.000 0.00 0.00 0.00 4.20
2422 2565 6.051179 AGAGAAAAGTTGGTATGTACTCCC 57.949 41.667 0.00 0.00 0.00 4.30
2423 2566 7.609056 TGTAGAGAAAAGTTGGTATGTACTCC 58.391 38.462 0.00 0.00 0.00 3.85
2424 2567 9.141400 CTTGTAGAGAAAAGTTGGTATGTACTC 57.859 37.037 0.00 0.00 0.00 2.59
2425 2568 8.648693 ACTTGTAGAGAAAAGTTGGTATGTACT 58.351 33.333 0.00 0.00 32.75 2.73
2426 2569 8.828688 ACTTGTAGAGAAAAGTTGGTATGTAC 57.171 34.615 0.00 0.00 32.75 2.90
2523 2666 7.147828 TGGATGAAACTGTAGTCCTAATGAGAG 60.148 40.741 0.00 0.00 0.00 3.20
2684 2828 6.153680 AGACTTGGATGAAACTGTAGTCCTAG 59.846 42.308 0.00 0.00 37.67 3.02
2769 2913 4.475345 AGTATTCCTCTAGTTCCTCGCAT 58.525 43.478 0.00 0.00 0.00 4.73
2890 3035 2.500504 GGACTCGTTTAGGTGGGATCTT 59.499 50.000 0.00 0.00 0.00 2.40
2964 3109 4.202172 GGGCTCTCTTGGTGAATCTAGTAC 60.202 50.000 0.00 0.00 0.00 2.73
3000 3145 0.817634 CGGAGTGGCAAACTTGTGGA 60.818 55.000 0.00 0.00 40.07 4.02
3087 3238 1.588404 CGCGACGATGATATTATGCCC 59.412 52.381 0.00 0.00 0.00 5.36
3096 3247 1.061131 CAAAAGAAGCGCGACGATGAT 59.939 47.619 12.10 0.00 0.00 2.45
3130 3281 8.618702 TGTAATTAACACCGAAGAATTACCAA 57.381 30.769 11.71 0.00 41.15 3.67
3362 3516 9.854668 TTTGTAATAGCCCTGTAAGCATTTATA 57.145 29.630 0.00 0.00 0.00 0.98
3432 3586 8.651589 AATCTCCAACAAGATATATCGGTCTA 57.348 34.615 7.08 0.18 34.90 2.59
3552 3706 9.814899 AGAACTATCTCATCACATTCTAAAGTG 57.185 33.333 0.00 0.00 37.10 3.16
3748 3902 3.914771 AGCACATGCCAGGGTAATTAAT 58.085 40.909 0.00 0.00 43.38 1.40
3763 3917 4.037208 CAGAACAACTGGAAGAAAGCACAT 59.963 41.667 0.00 0.00 42.39 3.21
4274 6308 6.893958 AGAGTTACAGCAGATCAAATAACG 57.106 37.500 0.00 0.00 0.00 3.18
4341 6375 9.480861 TCATTTCTTAAAGTAGAGATCTCCTGA 57.519 33.333 19.30 2.24 0.00 3.86
4382 6416 8.428063 ACTCTATATGCTTTTCTAGACTTGCAT 58.572 33.333 21.41 21.41 42.64 3.96
4719 6761 3.256631 GGGATTTAGGCAGCACCATTATG 59.743 47.826 0.00 0.00 43.14 1.90
5002 7044 9.883142 ATGAAGTTCAAAATTGTACTCCAAAAA 57.117 25.926 10.14 0.00 37.75 1.94
5676 7736 4.758688 CCCATAATGCTTTTTCAGAACCC 58.241 43.478 0.00 0.00 0.00 4.11
5688 7748 3.459598 TCTCCTAAACTGCCCATAATGCT 59.540 43.478 0.00 0.00 0.00 3.79
5814 7878 5.606348 AGGTGTTTGCAAAAATAGTTCCA 57.394 34.783 14.67 1.89 0.00 3.53
5852 7916 6.714810 TGTGAGCACACTCCTAATAACAAAAT 59.285 34.615 15.43 0.00 46.07 1.82
5893 7957 1.810532 CTTTCTCGGACGGAGGGAG 59.189 63.158 9.88 5.07 43.34 4.30
5894 7958 2.348888 GCTTTCTCGGACGGAGGGA 61.349 63.158 9.88 0.00 43.34 4.20
5895 7959 1.889530 AAGCTTTCTCGGACGGAGGG 61.890 60.000 9.88 3.12 43.34 4.30
5896 7960 0.737715 CAAGCTTTCTCGGACGGAGG 60.738 60.000 9.88 0.00 43.34 4.30
5897 7961 0.038159 ACAAGCTTTCTCGGACGGAG 60.038 55.000 0.00 3.68 44.58 4.63
5898 7962 0.038526 GACAAGCTTTCTCGGACGGA 60.039 55.000 0.00 0.00 0.00 4.69
5899 7963 1.014564 GGACAAGCTTTCTCGGACGG 61.015 60.000 0.00 0.00 0.00 4.79
5900 7964 1.014564 GGGACAAGCTTTCTCGGACG 61.015 60.000 0.00 0.00 0.00 4.79
5901 7965 0.034896 TGGGACAAGCTTTCTCGGAC 59.965 55.000 0.00 0.00 31.92 4.79
5902 7966 2.447630 TGGGACAAGCTTTCTCGGA 58.552 52.632 0.00 0.00 31.92 4.55
5912 7976 5.893518 TTGAGGGACAAGCTTGGGACAAG 62.894 52.174 29.18 3.71 37.48 3.16
5913 7977 4.092026 TTGAGGGACAAGCTTGGGACAA 62.092 50.000 29.18 21.59 37.48 3.18
5914 7978 1.059584 TGAGGGACAAGCTTGGGACA 61.060 55.000 29.18 17.71 0.00 4.02
5915 7979 0.110486 TTGAGGGACAAGCTTGGGAC 59.890 55.000 29.18 18.90 34.20 4.46
5916 7980 0.850100 TTTGAGGGACAAGCTTGGGA 59.150 50.000 29.18 4.51 39.77 4.37
5917 7981 1.547372 CATTTGAGGGACAAGCTTGGG 59.453 52.381 29.18 6.83 39.77 4.12
5918 7982 1.547372 CCATTTGAGGGACAAGCTTGG 59.453 52.381 29.18 12.28 39.77 3.61
5919 7983 2.517959 TCCATTTGAGGGACAAGCTTG 58.482 47.619 24.84 24.84 39.77 4.01
5920 7984 2.978156 TCCATTTGAGGGACAAGCTT 57.022 45.000 0.00 0.00 39.77 3.74
5921 7985 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
5922 7986 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
5923 7987 5.688807 AGATACATCCATTTGAGGGACAAG 58.311 41.667 0.00 0.00 39.77 3.16
5924 7988 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
5925 7989 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
5926 7990 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
5927 7991 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
5928 7992 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
5929 7993 5.862845 AGTGCTAGATACATCCATTTGAGG 58.137 41.667 0.00 0.00 0.00 3.86
5930 7994 8.147058 AGTTAGTGCTAGATACATCCATTTGAG 58.853 37.037 0.00 0.00 0.00 3.02
5931 7995 8.023021 AGTTAGTGCTAGATACATCCATTTGA 57.977 34.615 0.00 0.00 0.00 2.69
5932 7996 8.554528 CAAGTTAGTGCTAGATACATCCATTTG 58.445 37.037 0.00 0.00 0.00 2.32
5933 7997 7.716998 CCAAGTTAGTGCTAGATACATCCATTT 59.283 37.037 0.00 0.00 0.00 2.32
5934 7998 7.147479 ACCAAGTTAGTGCTAGATACATCCATT 60.147 37.037 0.00 0.00 0.00 3.16
5935 7999 6.327626 ACCAAGTTAGTGCTAGATACATCCAT 59.672 38.462 0.00 0.00 0.00 3.41
5936 8000 5.661312 ACCAAGTTAGTGCTAGATACATCCA 59.339 40.000 0.00 0.00 0.00 3.41
5937 8001 5.986135 CACCAAGTTAGTGCTAGATACATCC 59.014 44.000 0.00 0.00 0.00 3.51
5938 8002 6.574350 ACACCAAGTTAGTGCTAGATACATC 58.426 40.000 0.99 0.00 38.87 3.06
5939 8003 6.546428 ACACCAAGTTAGTGCTAGATACAT 57.454 37.500 0.99 0.00 38.87 2.29
5940 8004 5.995565 ACACCAAGTTAGTGCTAGATACA 57.004 39.130 0.99 0.00 38.87 2.29
5952 8016 9.173021 CAAATGGATGTATCTAACACCAAGTTA 57.827 33.333 0.00 0.00 42.09 2.24
5953 8017 7.888021 TCAAATGGATGTATCTAACACCAAGTT 59.112 33.333 0.00 0.00 42.09 2.66
5954 8018 7.402054 TCAAATGGATGTATCTAACACCAAGT 58.598 34.615 0.00 0.00 42.09 3.16
5955 8019 7.012704 CCTCAAATGGATGTATCTAACACCAAG 59.987 40.741 0.00 0.00 42.09 3.61
5956 8020 6.828273 CCTCAAATGGATGTATCTAACACCAA 59.172 38.462 0.00 0.00 42.09 3.67
5957 8021 6.356556 CCTCAAATGGATGTATCTAACACCA 58.643 40.000 0.00 0.00 42.09 4.17
5958 8022 5.765182 CCCTCAAATGGATGTATCTAACACC 59.235 44.000 0.00 0.00 42.09 4.16
5959 8023 6.483640 GTCCCTCAAATGGATGTATCTAACAC 59.516 42.308 0.00 0.00 42.09 3.32
5960 8024 6.157820 TGTCCCTCAAATGGATGTATCTAACA 59.842 38.462 0.00 0.00 43.86 2.41
5961 8025 6.591935 TGTCCCTCAAATGGATGTATCTAAC 58.408 40.000 0.00 0.00 33.65 2.34
5962 8026 6.823286 TGTCCCTCAAATGGATGTATCTAA 57.177 37.500 0.00 0.00 33.65 2.10
5963 8027 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
5964 8028 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
5965 8029 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
5966 8030 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
5967 8031 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
5968 8032 2.042162 AGCTTGTCCCTCAAATGGATGT 59.958 45.455 0.00 0.00 35.48 3.06
5969 8033 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
5970 8034 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
5971 8035 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
5972 8036 4.309933 GAAAAAGCTTGTCCCTCAAATGG 58.690 43.478 0.00 0.00 35.48 3.16
5973 8037 3.983344 CGAAAAAGCTTGTCCCTCAAATG 59.017 43.478 0.00 0.00 35.48 2.32
5974 8038 3.005791 CCGAAAAAGCTTGTCCCTCAAAT 59.994 43.478 0.00 0.00 35.48 2.32
5975 8039 2.360801 CCGAAAAAGCTTGTCCCTCAAA 59.639 45.455 0.00 0.00 35.48 2.69
5976 8040 1.953686 CCGAAAAAGCTTGTCCCTCAA 59.046 47.619 0.00 0.00 34.61 3.02
5977 8041 1.142060 TCCGAAAAAGCTTGTCCCTCA 59.858 47.619 0.00 0.00 0.00 3.86
5978 8042 1.535896 GTCCGAAAAAGCTTGTCCCTC 59.464 52.381 0.00 0.00 0.00 4.30
5979 8043 1.133915 TGTCCGAAAAAGCTTGTCCCT 60.134 47.619 0.00 0.00 0.00 4.20
5980 8044 1.266989 CTGTCCGAAAAAGCTTGTCCC 59.733 52.381 0.00 0.00 0.00 4.46
5981 8045 2.218603 TCTGTCCGAAAAAGCTTGTCC 58.781 47.619 0.00 0.00 0.00 4.02
5982 8046 2.224314 CCTCTGTCCGAAAAAGCTTGTC 59.776 50.000 0.00 0.00 0.00 3.18
5983 8047 2.222027 CCTCTGTCCGAAAAAGCTTGT 58.778 47.619 0.00 0.00 0.00 3.16
5984 8048 1.537202 CCCTCTGTCCGAAAAAGCTTG 59.463 52.381 0.00 0.00 0.00 4.01
5985 8049 1.420138 TCCCTCTGTCCGAAAAAGCTT 59.580 47.619 0.00 0.00 0.00 3.74
5986 8050 1.002544 CTCCCTCTGTCCGAAAAAGCT 59.997 52.381 0.00 0.00 0.00 3.74
5987 8051 1.443802 CTCCCTCTGTCCGAAAAAGC 58.556 55.000 0.00 0.00 0.00 3.51
5988 8052 1.270839 TGCTCCCTCTGTCCGAAAAAG 60.271 52.381 0.00 0.00 0.00 2.27
5989 8053 0.762418 TGCTCCCTCTGTCCGAAAAA 59.238 50.000 0.00 0.00 0.00 1.94
5990 8054 0.984230 ATGCTCCCTCTGTCCGAAAA 59.016 50.000 0.00 0.00 0.00 2.29
5991 8055 0.250234 CATGCTCCCTCTGTCCGAAA 59.750 55.000 0.00 0.00 0.00 3.46
5992 8056 0.614697 TCATGCTCCCTCTGTCCGAA 60.615 55.000 0.00 0.00 0.00 4.30
5993 8057 0.397675 ATCATGCTCCCTCTGTCCGA 60.398 55.000 0.00 0.00 0.00 4.55
5994 8058 0.033228 GATCATGCTCCCTCTGTCCG 59.967 60.000 0.00 0.00 0.00 4.79
5995 8059 1.126488 TGATCATGCTCCCTCTGTCC 58.874 55.000 0.00 0.00 0.00 4.02
5996 8060 2.485124 CCTTGATCATGCTCCCTCTGTC 60.485 54.545 0.00 0.00 0.00 3.51
5997 8061 1.489649 CCTTGATCATGCTCCCTCTGT 59.510 52.381 0.00 0.00 0.00 3.41
5998 8062 1.814634 GCCTTGATCATGCTCCCTCTG 60.815 57.143 9.78 0.00 0.00 3.35
5999 8063 0.473326 GCCTTGATCATGCTCCCTCT 59.527 55.000 9.78 0.00 0.00 3.69
6000 8064 0.473326 AGCCTTGATCATGCTCCCTC 59.527 55.000 13.02 0.00 0.00 4.30
6001 8065 1.698532 CTAGCCTTGATCATGCTCCCT 59.301 52.381 20.00 8.36 36.57 4.20
6002 8066 1.881498 GCTAGCCTTGATCATGCTCCC 60.881 57.143 20.00 10.95 36.57 4.30
6003 8067 1.521580 GCTAGCCTTGATCATGCTCC 58.478 55.000 20.00 11.23 36.57 4.70
6004 8068 1.146637 CGCTAGCCTTGATCATGCTC 58.853 55.000 20.00 9.11 36.57 4.26
6005 8069 0.467384 ACGCTAGCCTTGATCATGCT 59.533 50.000 20.20 20.20 39.10 3.79
6006 8070 0.864455 GACGCTAGCCTTGATCATGC 59.136 55.000 9.66 9.17 0.00 4.06
6007 8071 2.522836 AGACGCTAGCCTTGATCATG 57.477 50.000 9.66 0.00 0.00 3.07
6008 8072 3.384789 TGTTAGACGCTAGCCTTGATCAT 59.615 43.478 9.66 0.00 0.00 2.45
6022 8086 5.347907 GTCCTTGTGGAATACTTGTTAGACG 59.652 44.000 0.00 0.00 45.18 4.18
6362 8435 6.088016 TCAACTGGTCAAGATTTCAAATGG 57.912 37.500 0.00 0.00 0.00 3.16
6404 8477 8.133627 CACTGAGAAAAGGCTTCCATTATAATG 58.866 37.037 17.11 17.11 36.17 1.90
6407 8480 6.069673 TCCACTGAGAAAAGGCTTCCATTATA 60.070 38.462 0.00 0.00 0.00 0.98
6455 8529 0.395312 GAAGGGTCCGACCACTTTGA 59.605 55.000 19.43 0.00 41.02 2.69
6492 8566 1.320344 CCTAGTGCACGTAGCTCCCA 61.320 60.000 12.01 0.05 45.94 4.37
6579 8654 2.878406 CCCTTTTCTCAGCGAAGTCAAA 59.122 45.455 0.00 0.00 32.21 2.69
6681 8756 2.102749 CGGTTTGGATGGCATGCG 59.897 61.111 14.47 0.00 0.00 4.73
6713 8788 3.275617 AGCGGCTCAAATGTATTACCA 57.724 42.857 0.00 0.00 0.00 3.25
6752 8827 1.860484 GAAGGCACAGCACAAGGAGC 61.860 60.000 0.00 0.00 0.00 4.70
6802 8877 2.823747 TGCAGGTGTTACTCTCGTGTAT 59.176 45.455 0.00 0.00 0.00 2.29
7158 9241 9.213799 TGCAGAAAGAAAACACAAATAAACTTT 57.786 25.926 0.00 0.00 0.00 2.66
7163 9246 7.277539 CCAACTGCAGAAAGAAAACACAAATAA 59.722 33.333 23.35 0.00 0.00 1.40
7325 9408 5.613358 AAAAGAGTCCAAGTAAGCAATCG 57.387 39.130 0.00 0.00 0.00 3.34
7326 9409 6.970484 TGAAAAAGAGTCCAAGTAAGCAATC 58.030 36.000 0.00 0.00 0.00 2.67
7332 9415 6.772716 AGCAGAATGAAAAAGAGTCCAAGTAA 59.227 34.615 0.00 0.00 39.69 2.24
7368 9451 5.582269 CCTTTGACGCTATCTCTGAAATGAA 59.418 40.000 0.00 0.00 0.00 2.57
7444 9527 4.874396 CCAAAAAGGTAGTAGAATCGTCCC 59.126 45.833 0.00 0.00 0.00 4.46
7510 9593 2.096496 CACTTTATTTGCGCTCTCCCTG 59.904 50.000 9.73 0.00 0.00 4.45
7806 9889 9.525007 GAGTAAGTAACATGTACATTCAAAACG 57.475 33.333 5.37 0.00 0.00 3.60
7889 9972 9.192642 AGTAGAGAGATAAAAGAGACCCTTTAC 57.807 37.037 0.00 0.00 43.90 2.01
8051 10146 0.623194 TAGGCATGCTTAAGGGCACA 59.377 50.000 18.92 0.00 45.36 4.57
8052 10147 1.312815 CTAGGCATGCTTAAGGGCAC 58.687 55.000 18.92 0.00 45.36 5.01
8053 10148 0.183492 CCTAGGCATGCTTAAGGGCA 59.817 55.000 18.92 0.00 46.63 5.36
8056 10151 1.510480 GCGCCTAGGCATGCTTAAGG 61.510 60.000 32.47 20.69 42.06 2.69
8086 10181 1.112113 CCTCAAGGCTAGGCGTTCTA 58.888 55.000 11.10 0.00 34.33 2.10
8118 10220 7.290813 CCCTAGGTCTAAATTCCTATTTTGCT 58.709 38.462 8.29 0.00 36.00 3.91
8304 10435 8.211629 AGGTCCATGTAATAAGGTAGAAATGTC 58.788 37.037 0.00 0.00 0.00 3.06
8331 10462 6.042143 CAGCTTTTGGCCGTAAATCATAAAT 58.958 36.000 0.00 0.00 43.05 1.40
8343 10474 1.856265 GAGACCACAGCTTTTGGCCG 61.856 60.000 10.59 0.00 43.05 6.13
8344 10475 0.823356 TGAGACCACAGCTTTTGGCC 60.823 55.000 10.59 0.00 43.05 5.36
8345 10476 0.595095 CTGAGACCACAGCTTTTGGC 59.405 55.000 10.59 4.70 37.69 4.52
8370 10509 0.319900 GTGGCGCTCTTGTTCTCTCA 60.320 55.000 7.64 0.00 0.00 3.27
8457 10663 3.374678 GGTGTTTACAAACCAGTCGTTGA 59.625 43.478 2.55 0.00 38.11 3.18
8484 10690 7.276658 TCCTGTGTTCACAAACTTGAGTTATA 58.723 34.615 7.07 0.00 37.25 0.98
8503 10710 6.263168 AGTTGTTGAGTCCTTATTTTCCTGTG 59.737 38.462 0.00 0.00 0.00 3.66
8525 10732 8.918202 TCTTTAAGACATGTTATCAACCAGTT 57.082 30.769 0.00 0.00 0.00 3.16
8606 10813 3.254060 GAGCATCTACGTTGTGTCATGT 58.746 45.455 0.00 0.00 0.00 3.21
8607 10814 3.914555 GAGCATCTACGTTGTGTCATG 57.085 47.619 0.00 0.00 0.00 3.07
8645 10853 4.752063 TGCCTGGGCTCTATCTTATTCTA 58.248 43.478 13.05 0.00 42.51 2.10
8646 10854 3.582208 CTGCCTGGGCTCTATCTTATTCT 59.418 47.826 13.05 0.00 42.51 2.40
8649 10857 3.172339 CTCTGCCTGGGCTCTATCTTAT 58.828 50.000 13.05 0.00 42.51 1.73
8657 10865 4.527583 CGCTCTCTGCCTGGGCTC 62.528 72.222 13.05 0.00 42.51 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.