Multiple sequence alignment - TraesCS1B01G167700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G167700 chr1B 100.000 6278 0 0 1 6278 297055666 297061943 0.000000e+00 11594
1 TraesCS1B01G167700 chr1A 93.523 5496 251 49 1 5424 257414133 257419595 0.000000e+00 8080
2 TraesCS1B01G167700 chr1A 85.437 412 21 11 5541 5933 257420118 257420509 5.900000e-105 392
3 TraesCS1B01G167700 chr1A 92.000 150 3 2 5411 5551 257419626 257419775 1.070000e-47 202
4 TraesCS1B01G167700 chr1D 93.338 5374 248 38 625 5933 203267697 203273025 0.000000e+00 7840
5 TraesCS1B01G167700 chr1D 91.176 204 13 1 1 204 203264521 203264719 8.020000e-69 272
6 TraesCS1B01G167700 chr1D 86.413 184 6 7 328 506 203265142 203265311 3.870000e-42 183
7 TraesCS1B01G167700 chr1D 86.335 161 18 4 6115 6273 418312123 418312281 8.370000e-39 172
8 TraesCS1B01G167700 chr1D 86.250 160 15 6 6115 6270 414147098 414147254 3.890000e-37 167
9 TraesCS1B01G167700 chr1D 81.765 170 26 5 6111 6278 27546862 27547028 3.050000e-28 137
10 TraesCS1B01G167700 chr5D 83.996 1862 258 31 1214 3057 33679569 33677730 0.000000e+00 1751
11 TraesCS1B01G167700 chr4B 84.124 1833 268 14 1317 3136 657255583 657253761 0.000000e+00 1751
12 TraesCS1B01G167700 chr5A 83.379 1835 281 17 1317 3136 698456844 698455019 0.000000e+00 1677
13 TraesCS1B01G167700 chr6A 83.685 1753 274 8 1316 3062 12055380 12057126 0.000000e+00 1642
14 TraesCS1B01G167700 chr6A 89.691 194 17 1 4364 4554 23745859 23745666 1.750000e-60 244
15 TraesCS1B01G167700 chr6B 83.523 1754 273 8 1314 3062 19233002 19234744 0.000000e+00 1624
16 TraesCS1B01G167700 chr6B 82.792 1755 276 15 1314 3062 19240170 19241904 0.000000e+00 1544
17 TraesCS1B01G167700 chr6B 89.262 149 13 2 4364 4512 41625732 41625587 3.870000e-42 183
18 TraesCS1B01G167700 chr4D 84.878 1521 213 13 1317 2827 509510790 509512303 0.000000e+00 1519
19 TraesCS1B01G167700 chr4D 83.133 166 20 6 6116 6278 94759054 94759214 1.820000e-30 145
20 TraesCS1B01G167700 chrUn 94.307 404 14 2 5289 5683 50157178 50156775 1.500000e-170 610
21 TraesCS1B01G167700 chrUn 94.307 404 14 2 5289 5683 340066547 340066144 1.500000e-170 610
22 TraesCS1B01G167700 chr4A 80.789 380 60 11 4839 5217 522297884 522297517 1.030000e-72 285
23 TraesCS1B01G167700 chr4A 85.987 157 18 3 6115 6270 713957137 713957290 1.400000e-36 165
24 TraesCS1B01G167700 chr4A 81.928 166 26 3 6115 6278 721945289 721945126 3.050000e-28 137
25 TraesCS1B01G167700 chr7D 86.061 165 20 3 6115 6278 422205114 422205276 2.330000e-39 174
26 TraesCS1B01G167700 chr2B 85.276 163 19 3 6115 6273 230212728 230212567 5.040000e-36 163
27 TraesCS1B01G167700 chr2B 84.146 164 25 1 6115 6278 35114467 35114305 2.340000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G167700 chr1B 297055666 297061943 6277 False 11594.000000 11594 100.000 1 6278 1 chr1B.!!$F1 6277
1 TraesCS1B01G167700 chr1A 257414133 257420509 6376 False 2891.333333 8080 90.320 1 5933 3 chr1A.!!$F1 5932
2 TraesCS1B01G167700 chr1D 203264521 203273025 8504 False 2765.000000 7840 90.309 1 5933 3 chr1D.!!$F4 5932
3 TraesCS1B01G167700 chr5D 33677730 33679569 1839 True 1751.000000 1751 83.996 1214 3057 1 chr5D.!!$R1 1843
4 TraesCS1B01G167700 chr4B 657253761 657255583 1822 True 1751.000000 1751 84.124 1317 3136 1 chr4B.!!$R1 1819
5 TraesCS1B01G167700 chr5A 698455019 698456844 1825 True 1677.000000 1677 83.379 1317 3136 1 chr5A.!!$R1 1819
6 TraesCS1B01G167700 chr6A 12055380 12057126 1746 False 1642.000000 1642 83.685 1316 3062 1 chr6A.!!$F1 1746
7 TraesCS1B01G167700 chr6B 19233002 19234744 1742 False 1624.000000 1624 83.523 1314 3062 1 chr6B.!!$F1 1748
8 TraesCS1B01G167700 chr6B 19240170 19241904 1734 False 1544.000000 1544 82.792 1314 3062 1 chr6B.!!$F2 1748
9 TraesCS1B01G167700 chr4D 509510790 509512303 1513 False 1519.000000 1519 84.878 1317 2827 1 chr4D.!!$F2 1510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.337773 TCCTGACCCTCTCATGCTCT 59.662 55.000 0.00 0.0 0.00 4.09 F
602 3065 0.871592 GCGCGTCATGCAGATAGACA 60.872 55.000 8.43 0.0 46.97 3.41 F
1036 3663 0.251916 TATTCCGCTTCCCCACACAG 59.748 55.000 0.00 0.0 0.00 3.66 F
1773 4431 0.321653 GTGCCAACTTCCTCACCGAT 60.322 55.000 0.00 0.0 0.00 4.18 F
2738 5399 1.000270 TGCCCGCCACCATTACATT 60.000 52.632 0.00 0.0 0.00 2.71 F
3067 5731 1.668101 GGACGTCTCTGGGAGCGAAT 61.668 60.000 16.46 0.0 34.90 3.34 F
4470 7134 0.183492 AGTTGCTTGGGTCTGCTTCA 59.817 50.000 0.00 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1015 3642 0.035820 GTGTGGGGAAGCGGAATACA 60.036 55.000 0.00 0.00 0.00 2.29 R
2085 4746 0.464870 CTCTGAGCTGGGACATGGAG 59.535 60.000 0.00 0.00 38.20 3.86 R
3034 5698 1.218316 CGTCCAGGTAGTCCAAGCC 59.782 63.158 0.00 0.00 35.89 4.35 R
3373 6037 0.251354 CTGAGCTTGCTAAGGCCAGA 59.749 55.000 5.01 0.00 37.74 3.86 R
3865 6529 0.033228 CGAGGCCTCCTTCTGCATAG 59.967 60.000 27.20 4.84 31.76 2.23 R
4950 7632 0.110823 CAACAACGCCGAAGCTGTAC 60.111 55.000 0.00 0.00 36.60 2.90 R
5940 9062 0.037303 AACCTGTCGAGACGGAGGTA 59.963 55.000 13.22 0.00 38.49 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.760385 CCACCTCCGGTCCTCCTC 60.760 72.222 0.00 0.00 31.02 3.71
57 58 3.009143 GGTCCTCCTCTGTAAACATTGGT 59.991 47.826 0.00 0.00 0.00 3.67
132 133 1.004394 GTTGTAACCCCCTTCCTCCTG 59.996 57.143 0.00 0.00 0.00 3.86
142 143 1.343884 CCTTCCTCCTGACCCTCTCAT 60.344 57.143 0.00 0.00 0.00 2.90
147 148 0.337773 TCCTGACCCTCTCATGCTCT 59.662 55.000 0.00 0.00 0.00 4.09
156 157 2.089980 CTCTCATGCTCTGGTTTTGGG 58.910 52.381 0.00 0.00 0.00 4.12
158 159 2.108075 TCTCATGCTCTGGTTTTGGGAA 59.892 45.455 0.00 0.00 0.00 3.97
223 251 9.679661 TCTACTTACCAATGAAAGATATGCAAA 57.320 29.630 0.00 0.00 0.00 3.68
241 269 4.944962 CAAACTCTTGCGTATCCATGAA 57.055 40.909 0.00 0.00 0.00 2.57
299 327 2.788407 GCACACTTTTTCAACGCGTGTA 60.788 45.455 14.98 0.00 36.76 2.90
331 359 1.363744 GCGTGATAAGCTGCAAGACT 58.636 50.000 1.02 0.00 34.07 3.24
401 722 8.565896 AAAGAACATGTAGCAACTAATGATGA 57.434 30.769 0.00 0.00 0.00 2.92
418 739 7.621428 AATGATGATATAAATCTCAAGGCCG 57.379 36.000 0.00 0.00 32.93 6.13
478 799 2.135933 GCTCCACGCCACTATACAATC 58.864 52.381 0.00 0.00 0.00 2.67
479 800 2.224066 GCTCCACGCCACTATACAATCT 60.224 50.000 0.00 0.00 0.00 2.40
480 801 3.005472 GCTCCACGCCACTATACAATCTA 59.995 47.826 0.00 0.00 0.00 1.98
484 806 6.684686 TCCACGCCACTATACAATCTATTAC 58.315 40.000 0.00 0.00 0.00 1.89
593 3056 2.270275 ATAGATAGAGCGCGTCATGC 57.730 50.000 8.43 0.00 41.47 4.06
602 3065 0.871592 GCGCGTCATGCAGATAGACA 60.872 55.000 8.43 0.00 46.97 3.41
644 3233 2.221169 CAAGTTTGGAGTGCAGCTACA 58.779 47.619 0.00 0.00 35.94 2.74
805 3428 5.596845 TCACGATGGATCAATCAACGATTA 58.403 37.500 10.75 0.00 30.44 1.75
882 3509 5.691305 GTCAAAGCACTGCATTTTTACATCA 59.309 36.000 3.30 0.00 0.00 3.07
886 3513 4.681025 AGCACTGCATTTTTACATCAAACG 59.319 37.500 3.30 0.00 0.00 3.60
967 3594 1.377333 CGGCCCTGAAACCCTCTTC 60.377 63.158 0.00 0.00 0.00 2.87
971 3598 1.339535 GCCCTGAAACCCTCTTCTCTG 60.340 57.143 0.00 0.00 0.00 3.35
1015 3642 2.185350 CGATGCCTCCAAGTCGCT 59.815 61.111 0.00 0.00 0.00 4.93
1019 3646 0.833287 ATGCCTCCAAGTCGCTGTAT 59.167 50.000 0.00 0.00 0.00 2.29
1020 3647 0.613260 TGCCTCCAAGTCGCTGTATT 59.387 50.000 0.00 0.00 0.00 1.89
1036 3663 0.251916 TATTCCGCTTCCCCACACAG 59.748 55.000 0.00 0.00 0.00 3.66
1074 3708 3.776158 CCCAACCACACACATGGG 58.224 61.111 0.00 0.00 46.07 4.00
1075 3709 1.152567 CCCAACCACACACATGGGT 60.153 57.895 0.00 0.00 46.13 4.51
1088 3722 1.753073 ACATGGGTGCCGTACTAGTAC 59.247 52.381 21.06 21.06 0.00 2.73
1089 3723 2.029623 CATGGGTGCCGTACTAGTACT 58.970 52.381 26.36 0.00 34.04 2.73
1090 3724 3.216800 CATGGGTGCCGTACTAGTACTA 58.783 50.000 26.36 12.80 34.04 1.82
1091 3725 2.923121 TGGGTGCCGTACTAGTACTAG 58.077 52.381 26.36 25.30 39.04 2.57
1118 3752 0.898789 TGTCTCCTCGAGTCAACCCC 60.899 60.000 12.31 0.00 0.00 4.95
1175 3809 3.591835 CCTCCTCTCGCTCCGCTC 61.592 72.222 0.00 0.00 0.00 5.03
1566 4224 3.755526 CTTCATCGGCGCCATCCCA 62.756 63.158 28.98 5.79 0.00 4.37
1620 4278 4.373116 GACCTCGGCAGCAACGGA 62.373 66.667 0.00 0.00 0.00 4.69
1773 4431 0.321653 GTGCCAACTTCCTCACCGAT 60.322 55.000 0.00 0.00 0.00 4.18
2060 4721 4.704540 ACGGATTGCAACCAATAATCTGAA 59.295 37.500 0.00 0.00 41.60 3.02
2085 4746 1.032794 GAATCCCCGATTTCCTTGGC 58.967 55.000 0.00 0.00 31.89 4.52
2738 5399 1.000270 TGCCCGCCACCATTACATT 60.000 52.632 0.00 0.00 0.00 2.71
3067 5731 1.668101 GGACGTCTCTGGGAGCGAAT 61.668 60.000 16.46 0.00 34.90 3.34
3148 5812 3.537580 GACGGCAATGGTTTATCAGGTA 58.462 45.455 0.00 0.00 0.00 3.08
3288 5952 3.591789 TCTTAGCCATAATGCCCTCTCT 58.408 45.455 0.00 0.00 0.00 3.10
3504 6168 6.336566 TCTTGATCTGAGCAGTAACTCATTC 58.663 40.000 0.00 0.00 45.34 2.67
3583 6247 2.061773 CACACAACGATCTCAGTGGTC 58.938 52.381 11.34 0.00 36.35 4.02
3865 6529 1.061570 GCTGCTTGCGTCATACTGC 59.938 57.895 0.00 0.00 0.00 4.40
3964 6628 3.441500 AGGAGGGAAAGTTCACATTCC 57.558 47.619 5.53 5.53 41.58 3.01
4029 6693 1.732117 TTGGTAAAGGAGGGTTCGGA 58.268 50.000 0.00 0.00 0.00 4.55
4032 6696 1.627329 GGTAAAGGAGGGTTCGGAACT 59.373 52.381 19.40 1.55 0.00 3.01
4059 6723 4.410743 GCCGAGCTTGCAAGTGGC 62.411 66.667 30.14 30.14 45.13 5.01
4155 6819 2.988010 ATGAGATAAAGGCGCTGACA 57.012 45.000 7.64 0.00 0.00 3.58
4227 6891 4.404715 GGTGACTACATGTACCTGGTGTAT 59.595 45.833 10.23 0.44 0.00 2.29
4272 6936 1.636988 CGAAGACATTGTACGGGGAC 58.363 55.000 0.00 0.00 0.00 4.46
4419 7083 8.845413 ATAATATCCTGCTTGAATCTGACTTC 57.155 34.615 0.00 0.00 0.00 3.01
4470 7134 0.183492 AGTTGCTTGGGTCTGCTTCA 59.817 50.000 0.00 0.00 0.00 3.02
4473 7137 0.183492 TGCTTGGGTCTGCTTCAACT 59.817 50.000 0.00 0.00 0.00 3.16
4497 7161 0.615331 GGACTTCTGTGGCAGGATCA 59.385 55.000 0.00 0.00 31.51 2.92
4526 7193 2.236395 ACATGGCTCCAGGTACACTTAC 59.764 50.000 4.19 0.00 39.28 2.34
4527 7194 2.018355 TGGCTCCAGGTACACTTACA 57.982 50.000 0.00 0.00 0.00 2.41
4569 7236 9.970395 TTTGCAATGAGACATATAAATGGATTC 57.030 29.630 0.00 0.00 37.43 2.52
4603 7270 5.935206 TGCTCGGTAACAATAATCTTTGTCA 59.065 36.000 0.00 0.00 38.85 3.58
4604 7271 6.428465 TGCTCGGTAACAATAATCTTTGTCAA 59.572 34.615 0.00 0.00 38.85 3.18
4605 7272 7.041030 TGCTCGGTAACAATAATCTTTGTCAAA 60.041 33.333 0.00 0.00 38.85 2.69
4606 7273 7.806014 GCTCGGTAACAATAATCTTTGTCAAAA 59.194 33.333 0.00 0.00 38.85 2.44
4642 7309 0.530870 GCGAAGATCCCTACTGGTGC 60.531 60.000 0.00 0.00 34.77 5.01
4643 7310 1.115467 CGAAGATCCCTACTGGTGCT 58.885 55.000 0.00 0.00 34.77 4.40
4647 7314 0.755686 GATCCCTACTGGTGCTGGAG 59.244 60.000 0.00 0.00 34.77 3.86
4651 7318 1.561542 CCCTACTGGTGCTGGAGAATT 59.438 52.381 0.00 0.00 0.00 2.17
4652 7319 2.025887 CCCTACTGGTGCTGGAGAATTT 60.026 50.000 0.00 0.00 0.00 1.82
4653 7320 3.562176 CCCTACTGGTGCTGGAGAATTTT 60.562 47.826 0.00 0.00 0.00 1.82
4658 7325 4.946157 ACTGGTGCTGGAGAATTTTATGAG 59.054 41.667 0.00 0.00 0.00 2.90
4659 7326 4.272489 TGGTGCTGGAGAATTTTATGAGG 58.728 43.478 0.00 0.00 0.00 3.86
4660 7327 4.018506 TGGTGCTGGAGAATTTTATGAGGA 60.019 41.667 0.00 0.00 0.00 3.71
4661 7328 4.336713 GGTGCTGGAGAATTTTATGAGGAC 59.663 45.833 0.00 0.00 0.00 3.85
4662 7329 4.943705 GTGCTGGAGAATTTTATGAGGACA 59.056 41.667 0.00 0.00 0.00 4.02
4664 7331 6.096001 GTGCTGGAGAATTTTATGAGGACATT 59.904 38.462 0.00 0.00 37.87 2.71
4665 7332 7.283127 GTGCTGGAGAATTTTATGAGGACATTA 59.717 37.037 0.00 0.00 37.87 1.90
4666 7333 8.000709 TGCTGGAGAATTTTATGAGGACATTAT 58.999 33.333 0.00 0.00 37.87 1.28
4667 7334 8.295288 GCTGGAGAATTTTATGAGGACATTATG 58.705 37.037 0.00 0.00 37.87 1.90
4707 7383 2.288213 TGTGCGTGAGAACCTAGTGAAG 60.288 50.000 0.00 0.00 39.64 3.02
4727 7408 5.483937 TGAAGCCACTTCTATCCTAGTTGAA 59.516 40.000 8.66 0.00 40.73 2.69
4728 7409 6.156949 TGAAGCCACTTCTATCCTAGTTGAAT 59.843 38.462 8.66 0.00 40.73 2.57
4734 7415 9.838339 CCACTTCTATCCTAGTTGAATAATTGT 57.162 33.333 0.00 0.00 0.00 2.71
4767 7448 6.689554 AGTTAAGTACTCAGAAGTAGTTGCC 58.310 40.000 13.40 6.10 46.43 4.52
4808 7489 4.875536 TGTATTTGGATCAGTGTCATTCCG 59.124 41.667 0.00 0.00 0.00 4.30
4864 7546 5.887598 ACTTAGCAATGTCATATTGGAGCAA 59.112 36.000 0.00 0.00 0.00 3.91
4865 7547 4.644103 AGCAATGTCATATTGGAGCAAC 57.356 40.909 0.00 0.00 0.00 4.17
4866 7548 4.018490 AGCAATGTCATATTGGAGCAACA 58.982 39.130 0.00 0.00 0.00 3.33
4867 7549 4.107622 GCAATGTCATATTGGAGCAACAC 58.892 43.478 0.00 0.00 0.00 3.32
4868 7550 4.380761 GCAATGTCATATTGGAGCAACACA 60.381 41.667 0.00 0.00 0.00 3.72
4869 7551 4.970662 ATGTCATATTGGAGCAACACAC 57.029 40.909 0.00 0.00 0.00 3.82
4870 7552 4.019792 TGTCATATTGGAGCAACACACT 57.980 40.909 0.00 0.00 0.00 3.55
4893 7575 3.780902 CACACTAACATATGACGGCTCA 58.219 45.455 10.38 0.00 0.00 4.26
4950 7632 3.062763 GGTGACAGAGAAGTGTGATGTG 58.937 50.000 0.00 0.00 0.00 3.21
5190 7872 2.150809 CTGCAATGCGATCCGTAGCG 62.151 60.000 0.00 0.00 37.63 4.26
5285 7967 2.639839 ACTACCAGAAGTGATGCACCTT 59.360 45.455 0.00 0.00 34.49 3.50
5312 7994 4.194640 CAGAGATTGTGAACCTACATGGG 58.805 47.826 0.00 0.00 41.11 4.00
5331 8013 1.615392 GGCAGGTGAAAATTGCAGACT 59.385 47.619 0.00 0.00 39.54 3.24
5370 8052 4.825422 TGCAGTTTCAGATCCTCAAGTAG 58.175 43.478 0.00 0.00 0.00 2.57
5382 8064 7.819415 CAGATCCTCAAGTAGTTTGTATGTCAA 59.181 37.037 0.00 0.00 38.01 3.18
5404 8086 1.604604 TAACTGCCAAAGACCAGCAC 58.395 50.000 0.00 0.00 32.37 4.40
5556 8650 3.055312 AGGGCTAAGCAGTAAGGTGTAAC 60.055 47.826 0.00 0.00 0.00 2.50
5557 8651 3.055312 GGGCTAAGCAGTAAGGTGTAACT 60.055 47.826 0.00 0.00 36.74 2.24
5558 8652 3.933332 GGCTAAGCAGTAAGGTGTAACTG 59.067 47.826 0.00 0.00 44.79 3.16
5559 8653 4.562963 GGCTAAGCAGTAAGGTGTAACTGT 60.563 45.833 4.57 0.00 44.03 3.55
5560 8654 5.337009 GGCTAAGCAGTAAGGTGTAACTGTA 60.337 44.000 4.57 0.00 44.03 2.74
5561 8655 6.161381 GCTAAGCAGTAAGGTGTAACTGTAA 58.839 40.000 4.57 0.00 44.03 2.41
5562 8656 6.310711 GCTAAGCAGTAAGGTGTAACTGTAAG 59.689 42.308 4.57 1.88 44.03 2.34
5563 8657 6.415206 AAGCAGTAAGGTGTAACTGTAAGA 57.585 37.500 4.57 0.00 44.03 2.10
5564 8658 6.607004 AGCAGTAAGGTGTAACTGTAAGAT 57.393 37.500 4.57 0.00 44.03 2.40
5565 8659 7.713734 AGCAGTAAGGTGTAACTGTAAGATA 57.286 36.000 4.57 0.00 44.03 1.98
5566 8660 8.307582 AGCAGTAAGGTGTAACTGTAAGATAT 57.692 34.615 4.57 0.00 44.03 1.63
5567 8661 9.417561 AGCAGTAAGGTGTAACTGTAAGATATA 57.582 33.333 4.57 0.00 44.03 0.86
5689 8783 8.697292 TCTTATAGCTCCCTAAAGAAGAGAAAC 58.303 37.037 0.00 0.00 0.00 2.78
5733 8827 4.322080 AGAAAACCAGTGGCTAAAAAGC 57.678 40.909 9.78 0.00 0.00 3.51
5740 8834 2.032799 CAGTGGCTAAAAAGCGTTGTGA 59.967 45.455 0.00 0.00 35.24 3.58
5766 8860 2.291735 TGATCCCATGCCACAACTTGAT 60.292 45.455 0.00 0.00 0.00 2.57
5821 8922 4.857130 GGTAGTACCCCCAAGAATTTCT 57.143 45.455 8.27 0.00 30.04 2.52
5822 8923 4.524053 GGTAGTACCCCCAAGAATTTCTG 58.476 47.826 8.27 0.00 30.04 3.02
5824 8925 2.649816 AGTACCCCCAAGAATTTCTGCT 59.350 45.455 0.00 0.00 0.00 4.24
5847 8969 1.063616 CCTCGCTGTTGCTGATCAATG 59.936 52.381 0.00 0.00 36.99 2.82
5852 8974 3.181504 CGCTGTTGCTGATCAATGATTCA 60.182 43.478 0.00 0.00 36.99 2.57
5864 8986 7.057894 TGATCAATGATTCATCTCCATCAACA 58.942 34.615 0.00 0.00 33.13 3.33
5909 9031 1.775869 CATGATCCATGGTCTCGTCG 58.224 55.000 12.58 3.70 38.11 5.12
5939 9061 3.189910 TGATTGACAAATCAGAGCACAGC 59.810 43.478 0.00 0.00 45.76 4.40
5940 9062 2.556144 TGACAAATCAGAGCACAGCT 57.444 45.000 0.00 0.00 43.88 4.24
5941 9063 3.683365 TGACAAATCAGAGCACAGCTA 57.317 42.857 0.00 0.00 39.88 3.32
5942 9064 3.329386 TGACAAATCAGAGCACAGCTAC 58.671 45.455 0.00 0.00 39.88 3.58
5943 9065 2.675348 GACAAATCAGAGCACAGCTACC 59.325 50.000 0.00 0.00 39.88 3.18
5944 9066 2.304180 ACAAATCAGAGCACAGCTACCT 59.696 45.455 0.00 0.00 39.88 3.08
5945 9067 2.935201 CAAATCAGAGCACAGCTACCTC 59.065 50.000 0.00 0.00 39.88 3.85
5946 9068 1.118838 ATCAGAGCACAGCTACCTCC 58.881 55.000 0.00 0.00 39.88 4.30
5947 9069 1.140589 CAGAGCACAGCTACCTCCG 59.859 63.158 0.00 0.00 39.88 4.63
5948 9070 1.304547 AGAGCACAGCTACCTCCGT 60.305 57.895 0.00 0.00 39.88 4.69
5949 9071 1.139947 GAGCACAGCTACCTCCGTC 59.860 63.158 0.00 0.00 39.88 4.79
5950 9072 1.304547 AGCACAGCTACCTCCGTCT 60.305 57.895 0.00 0.00 36.99 4.18
5951 9073 1.139947 GCACAGCTACCTCCGTCTC 59.860 63.158 0.00 0.00 0.00 3.36
5952 9074 1.429825 CACAGCTACCTCCGTCTCG 59.570 63.158 0.00 0.00 0.00 4.04
5953 9075 1.025113 CACAGCTACCTCCGTCTCGA 61.025 60.000 0.00 0.00 0.00 4.04
5954 9076 1.025647 ACAGCTACCTCCGTCTCGAC 61.026 60.000 0.00 0.00 0.00 4.20
5955 9077 1.025113 CAGCTACCTCCGTCTCGACA 61.025 60.000 0.00 0.00 0.00 4.35
5956 9078 0.745128 AGCTACCTCCGTCTCGACAG 60.745 60.000 0.00 0.00 0.00 3.51
5957 9079 1.716826 GCTACCTCCGTCTCGACAGG 61.717 65.000 2.80 2.80 34.41 4.00
5958 9080 0.392729 CTACCTCCGTCTCGACAGGT 60.393 60.000 12.12 12.12 40.91 4.00
5959 9081 0.037303 TACCTCCGTCTCGACAGGTT 59.963 55.000 12.55 1.27 39.47 3.50
5960 9082 1.213013 CCTCCGTCTCGACAGGTTG 59.787 63.158 0.00 0.00 0.00 3.77
5961 9083 1.241990 CCTCCGTCTCGACAGGTTGA 61.242 60.000 0.00 0.00 0.00 3.18
5962 9084 0.596577 CTCCGTCTCGACAGGTTGAA 59.403 55.000 0.00 0.00 0.00 2.69
5963 9085 1.000607 CTCCGTCTCGACAGGTTGAAA 60.001 52.381 0.00 0.00 0.00 2.69
5964 9086 1.616865 TCCGTCTCGACAGGTTGAAAT 59.383 47.619 0.00 0.00 0.00 2.17
5965 9087 2.036733 TCCGTCTCGACAGGTTGAAATT 59.963 45.455 0.00 0.00 0.00 1.82
5966 9088 2.157668 CCGTCTCGACAGGTTGAAATTG 59.842 50.000 0.00 0.00 0.00 2.32
5967 9089 2.157668 CGTCTCGACAGGTTGAAATTGG 59.842 50.000 0.00 0.00 0.00 3.16
5968 9090 2.095718 GTCTCGACAGGTTGAAATTGGC 60.096 50.000 0.00 0.00 0.00 4.52
5969 9091 0.871722 TCGACAGGTTGAAATTGGCG 59.128 50.000 0.00 0.00 44.42 5.69
5970 9092 0.109781 CGACAGGTTGAAATTGGCGG 60.110 55.000 0.00 0.00 39.58 6.13
5971 9093 0.388520 GACAGGTTGAAATTGGCGGC 60.389 55.000 0.00 0.00 0.00 6.53
5972 9094 0.827507 ACAGGTTGAAATTGGCGGCT 60.828 50.000 11.43 0.00 0.00 5.52
5973 9095 0.109132 CAGGTTGAAATTGGCGGCTC 60.109 55.000 11.43 0.00 0.00 4.70
5974 9096 0.251341 AGGTTGAAATTGGCGGCTCT 60.251 50.000 11.43 0.00 0.00 4.09
5975 9097 0.109132 GGTTGAAATTGGCGGCTCTG 60.109 55.000 11.43 0.00 0.00 3.35
5976 9098 0.109132 GTTGAAATTGGCGGCTCTGG 60.109 55.000 11.43 0.00 0.00 3.86
5977 9099 0.539438 TTGAAATTGGCGGCTCTGGT 60.539 50.000 11.43 0.00 0.00 4.00
5978 9100 0.539438 TGAAATTGGCGGCTCTGGTT 60.539 50.000 11.43 0.00 0.00 3.67
5979 9101 0.171231 GAAATTGGCGGCTCTGGTTC 59.829 55.000 11.43 3.28 0.00 3.62
5980 9102 1.586154 AAATTGGCGGCTCTGGTTCG 61.586 55.000 11.43 0.00 0.00 3.95
5981 9103 2.748058 AATTGGCGGCTCTGGTTCGT 62.748 55.000 11.43 0.00 0.00 3.85
5982 9104 3.876589 TTGGCGGCTCTGGTTCGTC 62.877 63.158 11.43 0.00 0.00 4.20
5983 9105 4.373116 GGCGGCTCTGGTTCGTCA 62.373 66.667 0.00 0.00 0.00 4.35
5984 9106 2.811317 GCGGCTCTGGTTCGTCAG 60.811 66.667 0.00 0.00 36.17 3.51
5985 9107 2.125912 CGGCTCTGGTTCGTCAGG 60.126 66.667 0.00 0.00 35.58 3.86
5986 9108 2.435059 GGCTCTGGTTCGTCAGGC 60.435 66.667 0.00 0.00 35.58 4.85
5987 9109 2.343758 GCTCTGGTTCGTCAGGCA 59.656 61.111 0.00 0.00 35.58 4.75
5988 9110 2.029844 GCTCTGGTTCGTCAGGCAC 61.030 63.158 0.00 0.00 35.58 5.01
6016 9138 4.096003 CTGCGGTGTCGGGGGATT 62.096 66.667 0.00 0.00 36.79 3.01
6017 9139 4.402528 TGCGGTGTCGGGGGATTG 62.403 66.667 0.00 0.00 36.79 2.67
6019 9141 4.402528 CGGTGTCGGGGGATTGCA 62.403 66.667 0.00 0.00 0.00 4.08
6020 9142 2.750237 GGTGTCGGGGGATTGCAC 60.750 66.667 0.00 0.00 0.00 4.57
6021 9143 2.033448 GTGTCGGGGGATTGCACA 59.967 61.111 0.00 0.00 0.00 4.57
6022 9144 2.033448 TGTCGGGGGATTGCACAC 59.967 61.111 0.00 0.00 0.00 3.82
6023 9145 3.124921 GTCGGGGGATTGCACACG 61.125 66.667 0.00 0.00 0.00 4.49
6024 9146 3.632080 TCGGGGGATTGCACACGT 61.632 61.111 0.00 0.00 0.00 4.49
6025 9147 2.266372 CGGGGGATTGCACACGTA 59.734 61.111 0.00 0.00 0.00 3.57
6026 9148 2.104253 CGGGGGATTGCACACGTAC 61.104 63.158 0.00 0.00 0.00 3.67
6027 9149 2.104253 GGGGGATTGCACACGTACG 61.104 63.158 15.01 15.01 0.00 3.67
6028 9150 1.079681 GGGGATTGCACACGTACGA 60.080 57.895 24.41 0.00 0.00 3.43
6029 9151 0.461339 GGGGATTGCACACGTACGAT 60.461 55.000 24.41 6.62 0.00 3.73
6030 9152 0.650512 GGGATTGCACACGTACGATG 59.349 55.000 24.41 19.65 0.00 3.84
6031 9153 1.635844 GGATTGCACACGTACGATGA 58.364 50.000 24.41 5.29 0.00 2.92
6032 9154 1.323534 GGATTGCACACGTACGATGAC 59.676 52.381 24.41 14.80 0.00 3.06
6033 9155 1.323534 GATTGCACACGTACGATGACC 59.676 52.381 24.41 12.26 0.00 4.02
6034 9156 0.668096 TTGCACACGTACGATGACCC 60.668 55.000 24.41 7.69 0.00 4.46
6035 9157 1.808390 GCACACGTACGATGACCCC 60.808 63.158 24.41 3.39 0.00 4.95
6036 9158 1.888018 CACACGTACGATGACCCCT 59.112 57.895 24.41 0.00 0.00 4.79
6037 9159 0.245539 CACACGTACGATGACCCCTT 59.754 55.000 24.41 0.00 0.00 3.95
6038 9160 0.971386 ACACGTACGATGACCCCTTT 59.029 50.000 24.41 0.00 0.00 3.11
6039 9161 1.345415 ACACGTACGATGACCCCTTTT 59.655 47.619 24.41 0.00 0.00 2.27
6040 9162 2.224354 ACACGTACGATGACCCCTTTTT 60.224 45.455 24.41 0.00 0.00 1.94
6058 9180 1.408969 TTTTTGGGAGACAACTGGCC 58.591 50.000 0.00 0.00 39.19 5.36
6059 9181 0.555769 TTTTGGGAGACAACTGGCCT 59.444 50.000 3.32 0.00 39.19 5.19
6060 9182 0.110486 TTTGGGAGACAACTGGCCTC 59.890 55.000 3.32 0.00 39.19 4.70
6061 9183 1.059584 TTGGGAGACAACTGGCCTCA 61.060 55.000 3.32 0.00 33.18 3.86
6062 9184 1.059584 TGGGAGACAACTGGCCTCAA 61.060 55.000 3.32 0.00 0.00 3.02
6063 9185 0.606673 GGGAGACAACTGGCCTCAAC 60.607 60.000 3.32 0.00 0.00 3.18
6064 9186 0.606673 GGAGACAACTGGCCTCAACC 60.607 60.000 3.32 0.00 0.00 3.77
6065 9187 0.951040 GAGACAACTGGCCTCAACCG 60.951 60.000 3.32 0.00 0.00 4.44
6066 9188 1.966451 GACAACTGGCCTCAACCGG 60.966 63.158 3.32 0.00 42.28 5.28
6073 9195 4.954933 GCCTCAACCGGCTGATAA 57.045 55.556 8.24 0.00 46.63 1.75
6074 9196 2.394604 GCCTCAACCGGCTGATAAC 58.605 57.895 8.24 0.00 46.63 1.89
6075 9197 1.095807 GCCTCAACCGGCTGATAACC 61.096 60.000 8.24 0.00 46.63 2.85
6076 9198 0.251916 CCTCAACCGGCTGATAACCA 59.748 55.000 8.24 0.00 0.00 3.67
6077 9199 1.369625 CTCAACCGGCTGATAACCAC 58.630 55.000 8.24 0.00 0.00 4.16
6078 9200 0.390603 TCAACCGGCTGATAACCACG 60.391 55.000 2.67 0.00 0.00 4.94
6079 9201 1.743995 AACCGGCTGATAACCACGC 60.744 57.895 0.00 0.00 0.00 5.34
6080 9202 2.895372 CCGGCTGATAACCACGCC 60.895 66.667 0.00 0.00 36.42 5.68
6082 9204 2.895372 GGCTGATAACCACGCCGG 60.895 66.667 0.00 0.00 42.50 6.13
6096 9218 4.148825 CCGGTCCGCCTCCTTCTG 62.149 72.222 5.50 0.00 0.00 3.02
6097 9219 4.821589 CGGTCCGCCTCCTTCTGC 62.822 72.222 0.00 0.00 0.00 4.26
6104 9226 3.523806 GCCTCCTTCTGCGATATCC 57.476 57.895 0.00 0.00 0.00 2.59
6105 9227 0.972883 GCCTCCTTCTGCGATATCCT 59.027 55.000 0.00 0.00 0.00 3.24
6106 9228 1.346068 GCCTCCTTCTGCGATATCCTT 59.654 52.381 0.00 0.00 0.00 3.36
6107 9229 2.224402 GCCTCCTTCTGCGATATCCTTT 60.224 50.000 0.00 0.00 0.00 3.11
6108 9230 3.006967 GCCTCCTTCTGCGATATCCTTTA 59.993 47.826 0.00 0.00 0.00 1.85
6109 9231 4.323104 GCCTCCTTCTGCGATATCCTTTAT 60.323 45.833 0.00 0.00 0.00 1.40
6110 9232 5.415221 CCTCCTTCTGCGATATCCTTTATC 58.585 45.833 0.00 0.00 0.00 1.75
6111 9233 5.047021 CCTCCTTCTGCGATATCCTTTATCA 60.047 44.000 0.00 0.00 0.00 2.15
6112 9234 5.784177 TCCTTCTGCGATATCCTTTATCAC 58.216 41.667 0.00 0.00 0.00 3.06
6113 9235 4.932200 CCTTCTGCGATATCCTTTATCACC 59.068 45.833 0.00 0.00 0.00 4.02
6114 9236 4.174411 TCTGCGATATCCTTTATCACCG 57.826 45.455 0.00 0.00 0.00 4.94
6115 9237 3.572682 TCTGCGATATCCTTTATCACCGT 59.427 43.478 0.00 0.00 0.00 4.83
6116 9238 4.038763 TCTGCGATATCCTTTATCACCGTT 59.961 41.667 0.00 0.00 0.00 4.44
6117 9239 4.055360 TGCGATATCCTTTATCACCGTTG 58.945 43.478 0.00 0.00 0.00 4.10
6118 9240 4.202172 TGCGATATCCTTTATCACCGTTGA 60.202 41.667 0.00 0.00 35.73 3.18
6119 9241 4.386049 GCGATATCCTTTATCACCGTTGAG 59.614 45.833 0.00 0.00 34.35 3.02
6120 9242 5.529791 CGATATCCTTTATCACCGTTGAGT 58.470 41.667 0.00 0.00 34.35 3.41
6121 9243 6.675026 CGATATCCTTTATCACCGTTGAGTA 58.325 40.000 0.00 0.00 34.35 2.59
6122 9244 7.313646 CGATATCCTTTATCACCGTTGAGTAT 58.686 38.462 0.00 0.00 34.35 2.12
6123 9245 8.456471 CGATATCCTTTATCACCGTTGAGTATA 58.544 37.037 0.00 0.00 34.35 1.47
6126 9248 8.833231 ATCCTTTATCACCGTTGAGTATATTG 57.167 34.615 0.00 0.00 34.35 1.90
6127 9249 7.214381 TCCTTTATCACCGTTGAGTATATTGG 58.786 38.462 0.00 0.00 34.35 3.16
6128 9250 6.990349 CCTTTATCACCGTTGAGTATATTGGT 59.010 38.462 0.00 0.00 34.35 3.67
6129 9251 7.497909 CCTTTATCACCGTTGAGTATATTGGTT 59.502 37.037 0.00 0.00 34.35 3.67
6130 9252 9.537192 CTTTATCACCGTTGAGTATATTGGTTA 57.463 33.333 0.00 0.00 34.35 2.85
6132 9254 9.701098 TTATCACCGTTGAGTATATTGGTTATC 57.299 33.333 0.00 0.00 34.35 1.75
6133 9255 7.114866 TCACCGTTGAGTATATTGGTTATCA 57.885 36.000 0.00 0.00 0.00 2.15
6134 9256 7.732025 TCACCGTTGAGTATATTGGTTATCAT 58.268 34.615 0.00 0.00 0.00 2.45
6135 9257 7.655732 TCACCGTTGAGTATATTGGTTATCATG 59.344 37.037 0.00 0.00 0.00 3.07
6136 9258 7.655732 CACCGTTGAGTATATTGGTTATCATGA 59.344 37.037 0.00 0.00 0.00 3.07
6137 9259 8.208224 ACCGTTGAGTATATTGGTTATCATGAA 58.792 33.333 0.00 0.00 0.00 2.57
6138 9260 9.051679 CCGTTGAGTATATTGGTTATCATGAAA 57.948 33.333 0.00 0.00 0.00 2.69
6166 9288 9.771534 ATAAGATAGACTAGGATTTGTTCTTGC 57.228 33.333 0.00 0.00 0.00 4.01
6167 9289 7.430760 AGATAGACTAGGATTTGTTCTTGCT 57.569 36.000 0.00 0.00 0.00 3.91
6168 9290 7.856415 AGATAGACTAGGATTTGTTCTTGCTT 58.144 34.615 0.00 0.00 0.00 3.91
6169 9291 8.325046 AGATAGACTAGGATTTGTTCTTGCTTT 58.675 33.333 0.00 0.00 0.00 3.51
6170 9292 6.566197 AGACTAGGATTTGTTCTTGCTTTG 57.434 37.500 0.00 0.00 0.00 2.77
6171 9293 6.064717 AGACTAGGATTTGTTCTTGCTTTGT 58.935 36.000 0.00 0.00 0.00 2.83
6172 9294 6.205658 AGACTAGGATTTGTTCTTGCTTTGTC 59.794 38.462 0.00 0.00 0.00 3.18
6173 9295 6.064717 ACTAGGATTTGTTCTTGCTTTGTCT 58.935 36.000 0.00 0.00 0.00 3.41
6174 9296 5.859205 AGGATTTGTTCTTGCTTTGTCTT 57.141 34.783 0.00 0.00 0.00 3.01
6175 9297 5.594926 AGGATTTGTTCTTGCTTTGTCTTG 58.405 37.500 0.00 0.00 0.00 3.02
6176 9298 5.127682 AGGATTTGTTCTTGCTTTGTCTTGT 59.872 36.000 0.00 0.00 0.00 3.16
6177 9299 6.321181 AGGATTTGTTCTTGCTTTGTCTTGTA 59.679 34.615 0.00 0.00 0.00 2.41
6178 9300 6.417930 GGATTTGTTCTTGCTTTGTCTTGTAC 59.582 38.462 0.00 0.00 0.00 2.90
6179 9301 6.509418 TTTGTTCTTGCTTTGTCTTGTACT 57.491 33.333 0.00 0.00 0.00 2.73
6180 9302 6.509418 TTGTTCTTGCTTTGTCTTGTACTT 57.491 33.333 0.00 0.00 0.00 2.24
6181 9303 6.119144 TGTTCTTGCTTTGTCTTGTACTTC 57.881 37.500 0.00 0.00 0.00 3.01
6182 9304 5.645929 TGTTCTTGCTTTGTCTTGTACTTCA 59.354 36.000 0.00 0.00 0.00 3.02
6183 9305 6.318648 TGTTCTTGCTTTGTCTTGTACTTCAT 59.681 34.615 0.00 0.00 0.00 2.57
6184 9306 6.304356 TCTTGCTTTGTCTTGTACTTCATG 57.696 37.500 0.00 0.00 0.00 3.07
6185 9307 5.822519 TCTTGCTTTGTCTTGTACTTCATGT 59.177 36.000 0.00 0.00 0.00 3.21
6186 9308 6.989759 TCTTGCTTTGTCTTGTACTTCATGTA 59.010 34.615 0.00 0.00 0.00 2.29
6187 9309 7.497579 TCTTGCTTTGTCTTGTACTTCATGTAA 59.502 33.333 0.00 0.00 32.25 2.41
6188 9310 7.561021 TGCTTTGTCTTGTACTTCATGTAAA 57.439 32.000 0.00 0.00 32.25 2.01
6189 9311 8.165239 TGCTTTGTCTTGTACTTCATGTAAAT 57.835 30.769 0.00 0.00 32.25 1.40
6190 9312 8.289618 TGCTTTGTCTTGTACTTCATGTAAATC 58.710 33.333 0.00 0.00 32.25 2.17
6191 9313 8.289618 GCTTTGTCTTGTACTTCATGTAAATCA 58.710 33.333 0.00 0.00 32.25 2.57
6195 9317 9.283768 TGTCTTGTACTTCATGTAAATCATTGT 57.716 29.630 0.00 0.00 34.09 2.71
6222 9344 8.484214 TTCCTATATATATGTCCATGAGGCTC 57.516 38.462 7.79 7.79 33.74 4.70
6223 9345 7.595488 TCCTATATATATGTCCATGAGGCTCA 58.405 38.462 21.19 21.19 33.74 4.26
6224 9346 8.067488 TCCTATATATATGTCCATGAGGCTCAA 58.933 37.037 22.84 4.57 33.74 3.02
6225 9347 8.366401 CCTATATATATGTCCATGAGGCTCAAG 58.634 40.741 22.84 17.42 33.74 3.02
6226 9348 2.627515 TATGTCCATGAGGCTCAAGC 57.372 50.000 22.84 11.97 41.14 4.01
6227 9349 0.622136 ATGTCCATGAGGCTCAAGCA 59.378 50.000 22.84 16.94 44.36 3.91
6228 9350 0.401356 TGTCCATGAGGCTCAAGCAA 59.599 50.000 22.84 5.13 44.36 3.91
6229 9351 1.005097 TGTCCATGAGGCTCAAGCAAT 59.995 47.619 22.84 0.66 44.36 3.56
6230 9352 2.239402 TGTCCATGAGGCTCAAGCAATA 59.761 45.455 22.84 3.65 44.36 1.90
6231 9353 2.615912 GTCCATGAGGCTCAAGCAATAC 59.384 50.000 22.84 10.17 44.36 1.89
6232 9354 2.239402 TCCATGAGGCTCAAGCAATACA 59.761 45.455 22.84 0.00 44.36 2.29
6233 9355 2.357009 CCATGAGGCTCAAGCAATACAC 59.643 50.000 22.84 0.00 44.36 2.90
6234 9356 1.725641 TGAGGCTCAAGCAATACACG 58.274 50.000 16.28 0.00 44.36 4.49
6235 9357 1.275010 TGAGGCTCAAGCAATACACGA 59.725 47.619 16.28 0.00 44.36 4.35
6236 9358 2.289382 TGAGGCTCAAGCAATACACGAA 60.289 45.455 16.28 0.00 44.36 3.85
6237 9359 2.939103 GAGGCTCAAGCAATACACGAAT 59.061 45.455 10.25 0.00 44.36 3.34
6238 9360 3.347216 AGGCTCAAGCAATACACGAATT 58.653 40.909 4.13 0.00 44.36 2.17
6239 9361 4.513442 AGGCTCAAGCAATACACGAATTA 58.487 39.130 4.13 0.00 44.36 1.40
6240 9362 5.126067 AGGCTCAAGCAATACACGAATTAT 58.874 37.500 4.13 0.00 44.36 1.28
6241 9363 5.008019 AGGCTCAAGCAATACACGAATTATG 59.992 40.000 4.13 0.00 44.36 1.90
6242 9364 4.672413 GCTCAAGCAATACACGAATTATGC 59.328 41.667 0.00 0.00 41.59 3.14
6243 9365 5.168526 TCAAGCAATACACGAATTATGCC 57.831 39.130 0.00 0.00 0.00 4.40
6244 9366 4.637977 TCAAGCAATACACGAATTATGCCA 59.362 37.500 0.00 0.00 0.00 4.92
6245 9367 4.552166 AGCAATACACGAATTATGCCAC 57.448 40.909 0.00 0.00 0.00 5.01
6246 9368 3.315191 AGCAATACACGAATTATGCCACC 59.685 43.478 0.00 0.00 0.00 4.61
6247 9369 3.066064 GCAATACACGAATTATGCCACCA 59.934 43.478 0.00 0.00 0.00 4.17
6248 9370 4.261572 GCAATACACGAATTATGCCACCAT 60.262 41.667 0.00 0.00 35.44 3.55
6249 9371 5.049060 GCAATACACGAATTATGCCACCATA 60.049 40.000 0.00 0.00 32.85 2.74
6250 9372 6.349280 GCAATACACGAATTATGCCACCATAT 60.349 38.462 0.00 0.00 34.10 1.78
6251 9373 6.985188 ATACACGAATTATGCCACCATATC 57.015 37.500 0.00 0.00 34.10 1.63
6252 9374 4.072131 ACACGAATTATGCCACCATATCC 58.928 43.478 0.00 0.00 34.10 2.59
6253 9375 3.440173 CACGAATTATGCCACCATATCCC 59.560 47.826 0.00 0.00 34.10 3.85
6254 9376 3.330701 ACGAATTATGCCACCATATCCCT 59.669 43.478 0.00 0.00 34.10 4.20
6255 9377 3.941483 CGAATTATGCCACCATATCCCTC 59.059 47.826 0.00 0.00 34.10 4.30
6256 9378 4.273318 GAATTATGCCACCATATCCCTCC 58.727 47.826 0.00 0.00 34.10 4.30
6257 9379 1.668826 TATGCCACCATATCCCTCCC 58.331 55.000 0.00 0.00 32.85 4.30
6258 9380 0.103715 ATGCCACCATATCCCTCCCT 60.104 55.000 0.00 0.00 0.00 4.20
6259 9381 0.768221 TGCCACCATATCCCTCCCTC 60.768 60.000 0.00 0.00 0.00 4.30
6260 9382 1.492993 GCCACCATATCCCTCCCTCC 61.493 65.000 0.00 0.00 0.00 4.30
6261 9383 0.842467 CCACCATATCCCTCCCTCCC 60.842 65.000 0.00 0.00 0.00 4.30
6262 9384 0.194587 CACCATATCCCTCCCTCCCT 59.805 60.000 0.00 0.00 0.00 4.20
6263 9385 0.960423 ACCATATCCCTCCCTCCCTT 59.040 55.000 0.00 0.00 0.00 3.95
6264 9386 1.132365 ACCATATCCCTCCCTCCCTTC 60.132 57.143 0.00 0.00 0.00 3.46
6265 9387 1.153132 CCATATCCCTCCCTCCCTTCT 59.847 57.143 0.00 0.00 0.00 2.85
6266 9388 2.387160 CCATATCCCTCCCTCCCTTCTA 59.613 54.545 0.00 0.00 0.00 2.10
6267 9389 3.181395 CCATATCCCTCCCTCCCTTCTAA 60.181 52.174 0.00 0.00 0.00 2.10
6268 9390 2.498473 ATCCCTCCCTCCCTTCTAAC 57.502 55.000 0.00 0.00 0.00 2.34
6269 9391 1.098589 TCCCTCCCTCCCTTCTAACA 58.901 55.000 0.00 0.00 0.00 2.41
6270 9392 1.657162 TCCCTCCCTCCCTTCTAACAT 59.343 52.381 0.00 0.00 0.00 2.71
6271 9393 1.771255 CCCTCCCTCCCTTCTAACATG 59.229 57.143 0.00 0.00 0.00 3.21
6272 9394 1.771255 CCTCCCTCCCTTCTAACATGG 59.229 57.143 0.00 0.00 0.00 3.66
6273 9395 2.482494 CTCCCTCCCTTCTAACATGGT 58.518 52.381 0.00 0.00 0.00 3.55
6274 9396 3.632645 CCTCCCTCCCTTCTAACATGGTA 60.633 52.174 0.00 0.00 0.00 3.25
6275 9397 4.235372 CTCCCTCCCTTCTAACATGGTAT 58.765 47.826 0.00 0.00 0.00 2.73
6276 9398 4.232091 TCCCTCCCTTCTAACATGGTATC 58.768 47.826 0.00 0.00 0.00 2.24
6277 9399 3.973973 CCCTCCCTTCTAACATGGTATCA 59.026 47.826 0.00 0.00 0.00 2.15
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 1.995066 TGGGCCTCACCGATGATGT 60.995 57.895 4.53 0.00 40.62 3.06
57 58 2.892852 CTCAGGAAGAATGTTGGCCAAA 59.107 45.455 22.47 11.31 0.00 3.28
132 133 0.908198 AACCAGAGCATGAGAGGGTC 59.092 55.000 0.00 0.00 0.00 4.46
142 143 0.185901 AGCTTCCCAAAACCAGAGCA 59.814 50.000 0.00 0.00 0.00 4.26
147 148 1.547675 CCTAGCAGCTTCCCAAAACCA 60.548 52.381 0.00 0.00 0.00 3.67
262 290 2.265739 GCGACAGACCTGCATGGA 59.734 61.111 8.91 0.00 39.71 3.41
299 327 4.884901 CACGCGCGTGTTTTAGTT 57.115 50.000 45.19 16.39 40.91 2.24
311 339 0.025513 GTCTTGCAGCTTATCACGCG 59.974 55.000 3.53 3.53 0.00 6.01
331 359 4.403734 TGATAGAGTATATCACACCCGCA 58.596 43.478 3.30 0.00 0.00 5.69
401 722 6.611613 TCTCATCGGCCTTGAGATTTATAT 57.388 37.500 23.97 0.00 43.49 0.86
416 737 4.822350 TCTTGTCACTACCTATCTCATCGG 59.178 45.833 0.00 0.00 0.00 4.18
418 739 7.575414 TTCTCTTGTCACTACCTATCTCATC 57.425 40.000 0.00 0.00 0.00 2.92
480 801 9.997172 ATTTTGGATTCCTTTTCCTAGAGTAAT 57.003 29.630 3.95 0.00 34.17 1.89
484 806 8.907885 CCTTATTTTGGATTCCTTTTCCTAGAG 58.092 37.037 3.95 0.00 34.17 2.43
496 818 4.183865 GTTGCCAGCCTTATTTTGGATTC 58.816 43.478 0.00 0.00 33.76 2.52
570 3031 4.030753 GCATGACGCGCTCTATCTATTAAC 59.969 45.833 5.73 0.00 0.00 2.01
572 3033 3.190535 TGCATGACGCGCTCTATCTATTA 59.809 43.478 5.73 0.00 46.97 0.98
573 3034 2.029918 TGCATGACGCGCTCTATCTATT 60.030 45.455 5.73 0.00 46.97 1.73
593 3056 3.099905 TGGGTTCCAGAGTGTCTATCTG 58.900 50.000 0.00 0.00 43.15 2.90
602 3065 3.054361 GGACAATGTATGGGTTCCAGAGT 60.054 47.826 0.00 0.00 36.75 3.24
644 3233 2.258726 GCCGCGGGTTCAGTTTTCT 61.259 57.895 29.38 0.00 0.00 2.52
805 3428 6.347859 GGACGATTCCATTCCTCTTACTAT 57.652 41.667 0.00 0.00 42.30 2.12
894 3521 1.515521 CTTGCCGTGGTTTGACCTCC 61.516 60.000 0.00 0.00 39.58 4.30
967 3594 1.821332 GGAATTCCAGCGGCCAGAG 60.821 63.158 20.04 0.00 35.64 3.35
971 3598 3.394635 TACCGGAATTCCAGCGGCC 62.395 63.158 24.09 0.00 35.14 6.13
1015 3642 0.035820 GTGTGGGGAAGCGGAATACA 60.036 55.000 0.00 0.00 0.00 2.29
1019 3646 2.144078 TCTGTGTGGGGAAGCGGAA 61.144 57.895 0.00 0.00 0.00 4.30
1020 3647 2.525629 TCTGTGTGGGGAAGCGGA 60.526 61.111 0.00 0.00 0.00 5.54
1074 3708 6.757026 GTACTACTAGTACTAGTACGGCAC 57.243 45.833 30.50 21.05 45.70 5.01
1088 3722 5.663456 ACTCGAGGAGACAAGTACTACTAG 58.337 45.833 18.41 0.00 33.32 2.57
1089 3723 5.186603 TGACTCGAGGAGACAAGTACTACTA 59.813 44.000 18.41 0.00 32.27 1.82
1090 3724 4.020396 TGACTCGAGGAGACAAGTACTACT 60.020 45.833 18.41 0.00 32.27 2.57
1091 3725 4.252073 TGACTCGAGGAGACAAGTACTAC 58.748 47.826 18.41 0.00 32.27 2.73
1104 3738 4.796231 CGCGGGGTTGACTCGAGG 62.796 72.222 18.41 0.00 0.00 4.63
1407 4059 2.747686 GACACGCCCTTCCAGGAA 59.252 61.111 0.71 0.71 37.67 3.36
1620 4278 1.153168 CGGGATGGAGCCGTTGAAT 60.153 57.895 0.00 0.00 0.00 2.57
2060 4721 0.468648 GAAATCGGGGATTCCTCCGT 59.531 55.000 23.46 13.40 45.79 4.69
2085 4746 0.464870 CTCTGAGCTGGGACATGGAG 59.535 60.000 0.00 0.00 38.20 3.86
2535 5196 3.322541 TCACCGACAAATCCAACTGAGTA 59.677 43.478 0.00 0.00 0.00 2.59
2738 5399 5.124457 GCAAGGTATTGAAGATTTCTGAGCA 59.876 40.000 0.00 0.00 38.83 4.26
3034 5698 1.218316 CGTCCAGGTAGTCCAAGCC 59.782 63.158 0.00 0.00 35.89 4.35
3067 5731 2.306255 GAAGATAGCCGGCCGGTCAA 62.306 60.000 42.53 28.73 37.65 3.18
3148 5812 2.672996 AAACGCCGCTGGAATGCT 60.673 55.556 0.00 0.00 0.00 3.79
3288 5952 1.638529 AATTTGCCGGAATTGACCCA 58.361 45.000 5.05 0.00 0.00 4.51
3373 6037 0.251354 CTGAGCTTGCTAAGGCCAGA 59.749 55.000 5.01 0.00 37.74 3.86
3621 6285 7.657761 AGTCGATTGTAAGAGAAATCAACTGTT 59.342 33.333 0.00 0.00 30.71 3.16
3865 6529 0.033228 CGAGGCCTCCTTCTGCATAG 59.967 60.000 27.20 4.84 31.76 2.23
4029 6693 1.671742 CTCGGCCCTGTACACAGTT 59.328 57.895 8.48 0.00 42.27 3.16
4032 6696 2.214216 AAGCTCGGCCCTGTACACA 61.214 57.895 0.00 0.00 0.00 3.72
4059 6723 1.799258 GCTTCACAGCCACAACCTGG 61.799 60.000 0.00 0.00 44.08 4.45
4155 6819 2.866523 TATTCCGGTGGCGGACCTCT 62.867 60.000 0.00 0.00 43.55 3.69
4227 6891 0.474854 TGCCCCTTTCCAGGTACTCA 60.475 55.000 0.00 0.00 38.79 3.41
4272 6936 1.276421 TCCAGCTTCTTCTTCCCTTCG 59.724 52.381 0.00 0.00 0.00 3.79
4470 7134 2.438021 TGCCACAGAAGTCCAGTTAGTT 59.562 45.455 0.00 0.00 0.00 2.24
4473 7137 1.347707 CCTGCCACAGAAGTCCAGTTA 59.652 52.381 0.00 0.00 32.44 2.24
4497 7161 1.632409 CCTGGAGCCATGTAGCCATAT 59.368 52.381 0.00 0.00 0.00 1.78
4580 7247 6.417191 TGACAAAGATTATTGTTACCGAGC 57.583 37.500 0.00 0.00 43.31 5.03
4610 7277 5.011023 AGGGATCTTCGCATTTTTGAAGTTT 59.989 36.000 0.00 0.00 41.77 2.66
4619 7286 2.505819 ACCAGTAGGGATCTTCGCATTT 59.494 45.455 0.00 0.00 41.15 2.32
4623 7290 0.530870 GCACCAGTAGGGATCTTCGC 60.531 60.000 0.00 0.00 41.15 4.70
4642 7309 9.347240 ACATAATGTCCTCATAAAATTCTCCAG 57.653 33.333 0.00 0.00 33.49 3.86
4643 7310 9.699410 AACATAATGTCCTCATAAAATTCTCCA 57.301 29.630 0.00 0.00 33.49 3.86
4666 7333 9.811995 ACGCACAGTTAATAGAAATATCTAACA 57.188 29.630 0.00 0.00 41.38 2.41
4683 7359 1.687123 ACTAGGTTCTCACGCACAGTT 59.313 47.619 0.00 0.00 0.00 3.16
4686 7362 1.324383 TCACTAGGTTCTCACGCACA 58.676 50.000 0.00 0.00 0.00 4.57
4689 7365 1.351153 GCTTCACTAGGTTCTCACGC 58.649 55.000 0.00 0.00 0.00 5.34
4691 7367 2.689646 GTGGCTTCACTAGGTTCTCAC 58.310 52.381 0.00 0.00 38.32 3.51
4707 7383 8.778358 CAATTATTCAACTAGGATAGAAGTGGC 58.222 37.037 0.00 0.00 42.77 5.01
4767 7448 5.277974 AAATACACATATTAGCAAGGCTGCG 60.278 40.000 0.07 0.00 40.72 5.18
4808 7489 7.814107 TCTGAATTTTGTGGAATTTGAGCATAC 59.186 33.333 0.00 0.00 29.75 2.39
4864 7546 4.690748 GTCATATGTTAGTGTGCAGTGTGT 59.309 41.667 1.90 0.00 0.00 3.72
4865 7547 4.201618 CGTCATATGTTAGTGTGCAGTGTG 60.202 45.833 1.90 0.00 0.00 3.82
4866 7548 3.926527 CGTCATATGTTAGTGTGCAGTGT 59.073 43.478 1.90 0.00 0.00 3.55
4867 7549 3.306973 CCGTCATATGTTAGTGTGCAGTG 59.693 47.826 1.90 0.00 0.00 3.66
4868 7550 3.521560 CCGTCATATGTTAGTGTGCAGT 58.478 45.455 1.90 0.00 0.00 4.40
4869 7551 2.285220 GCCGTCATATGTTAGTGTGCAG 59.715 50.000 1.90 0.00 0.00 4.41
4870 7552 2.093711 AGCCGTCATATGTTAGTGTGCA 60.094 45.455 1.90 0.00 0.00 4.57
4950 7632 0.110823 CAACAACGCCGAAGCTGTAC 60.111 55.000 0.00 0.00 36.60 2.90
5190 7872 2.805099 GGTATGTGCTGCTATCTCTTGC 59.195 50.000 0.00 0.00 0.00 4.01
5285 7967 3.213206 AGGTTCACAATCTCTGCACAA 57.787 42.857 0.00 0.00 0.00 3.33
5312 7994 3.375782 AAGTCTGCAATTTTCACCTGC 57.624 42.857 0.00 0.00 36.60 4.85
5370 8052 7.938563 TTGGCAGTTAAATTGACATACAAAC 57.061 32.000 0.00 0.00 42.03 2.93
5382 8064 3.005791 GTGCTGGTCTTTGGCAGTTAAAT 59.994 43.478 0.00 0.00 36.62 1.40
5404 8086 5.960113 AGTTATCGCAATATGCTCTCCTAG 58.040 41.667 0.43 0.00 42.25 3.02
5444 8172 5.540337 TCAGACAGTCTTCAGGATAGTTTGT 59.460 40.000 0.00 0.00 0.00 2.83
5461 8189 5.237996 ACATCACATTGTTTCAGTCAGACAG 59.762 40.000 2.66 0.00 0.00 3.51
5566 8660 9.127277 ACTTGTTGCCTTTTTATTGTCTACTTA 57.873 29.630 0.00 0.00 0.00 2.24
5567 8661 8.007405 ACTTGTTGCCTTTTTATTGTCTACTT 57.993 30.769 0.00 0.00 0.00 2.24
5568 8662 7.582667 ACTTGTTGCCTTTTTATTGTCTACT 57.417 32.000 0.00 0.00 0.00 2.57
5569 8663 9.908152 AATACTTGTTGCCTTTTTATTGTCTAC 57.092 29.630 0.00 0.00 0.00 2.59
5673 8767 7.174426 ACATTAAACGGTTTCTCTTCTTTAGGG 59.826 37.037 9.78 0.00 0.00 3.53
5721 8815 2.766970 TCACAACGCTTTTTAGCCAC 57.233 45.000 0.00 0.00 0.00 5.01
5733 8827 3.825308 CATGGGATCACTTTTCACAACG 58.175 45.455 0.00 0.00 28.63 4.10
5740 8834 2.299867 GTTGTGGCATGGGATCACTTTT 59.700 45.455 0.00 0.00 33.04 2.27
5811 8912 2.352960 GCGAGGGTAGCAGAAATTCTTG 59.647 50.000 0.00 0.00 34.19 3.02
5813 8914 1.834263 AGCGAGGGTAGCAGAAATTCT 59.166 47.619 0.00 0.00 37.01 2.40
5814 8915 1.936547 CAGCGAGGGTAGCAGAAATTC 59.063 52.381 0.00 0.00 37.01 2.17
5818 8919 0.037326 CAACAGCGAGGGTAGCAGAA 60.037 55.000 0.00 0.00 37.01 3.02
5819 8920 1.591703 CAACAGCGAGGGTAGCAGA 59.408 57.895 0.00 0.00 37.01 4.26
5820 8921 2.103042 GCAACAGCGAGGGTAGCAG 61.103 63.158 0.00 0.00 37.01 4.24
5821 8922 2.047274 GCAACAGCGAGGGTAGCA 60.047 61.111 0.00 0.00 37.01 3.49
5822 8923 2.103042 CAGCAACAGCGAGGGTAGC 61.103 63.158 0.00 0.00 0.00 3.58
5824 8925 0.175760 GATCAGCAACAGCGAGGGTA 59.824 55.000 0.00 0.00 0.00 3.69
5847 8969 7.496920 TGATAGTGTTGTTGATGGAGATGAATC 59.503 37.037 0.00 0.00 0.00 2.52
5852 8974 6.765036 GTGATGATAGTGTTGTTGATGGAGAT 59.235 38.462 0.00 0.00 0.00 2.75
5864 8986 4.532126 TGGGACTCTTGTGATGATAGTGTT 59.468 41.667 0.00 0.00 0.00 3.32
5909 9031 6.182039 TCTGATTTGTCAATCAAACGATCC 57.818 37.500 0.00 0.00 46.67 3.36
5933 9055 1.139947 GAGACGGAGGTAGCTGTGC 59.860 63.158 0.00 0.00 0.00 4.57
5934 9056 1.025113 TCGAGACGGAGGTAGCTGTG 61.025 60.000 0.00 0.00 0.00 3.66
5935 9057 1.025647 GTCGAGACGGAGGTAGCTGT 61.026 60.000 0.00 0.00 0.00 4.40
5936 9058 1.025113 TGTCGAGACGGAGGTAGCTG 61.025 60.000 0.00 0.00 0.00 4.24
5937 9059 0.745128 CTGTCGAGACGGAGGTAGCT 60.745 60.000 6.20 0.00 40.06 3.32
5938 9060 1.716826 CCTGTCGAGACGGAGGTAGC 61.717 65.000 13.22 0.00 40.06 3.58
5939 9061 0.392729 ACCTGTCGAGACGGAGGTAG 60.393 60.000 13.22 0.00 37.98 3.18
5940 9062 0.037303 AACCTGTCGAGACGGAGGTA 59.963 55.000 13.22 0.00 38.49 3.08
5941 9063 1.228490 AACCTGTCGAGACGGAGGT 60.228 57.895 13.22 10.83 40.15 3.85
5942 9064 1.213013 CAACCTGTCGAGACGGAGG 59.787 63.158 13.22 10.23 40.06 4.30
5943 9065 0.596577 TTCAACCTGTCGAGACGGAG 59.403 55.000 13.22 6.37 40.06 4.63
5944 9066 1.034356 TTTCAACCTGTCGAGACGGA 58.966 50.000 13.22 0.00 40.06 4.69
5945 9067 2.080286 ATTTCAACCTGTCGAGACGG 57.920 50.000 5.13 5.13 37.44 4.79
5946 9068 2.157668 CCAATTTCAACCTGTCGAGACG 59.842 50.000 0.00 0.00 0.00 4.18
5947 9069 2.095718 GCCAATTTCAACCTGTCGAGAC 60.096 50.000 0.00 0.00 0.00 3.36
5948 9070 2.151202 GCCAATTTCAACCTGTCGAGA 58.849 47.619 0.00 0.00 0.00 4.04
5949 9071 1.135972 CGCCAATTTCAACCTGTCGAG 60.136 52.381 0.00 0.00 0.00 4.04
5950 9072 0.871722 CGCCAATTTCAACCTGTCGA 59.128 50.000 0.00 0.00 0.00 4.20
5951 9073 0.109781 CCGCCAATTTCAACCTGTCG 60.110 55.000 0.00 0.00 0.00 4.35
5952 9074 0.388520 GCCGCCAATTTCAACCTGTC 60.389 55.000 0.00 0.00 0.00 3.51
5953 9075 0.827507 AGCCGCCAATTTCAACCTGT 60.828 50.000 0.00 0.00 0.00 4.00
5954 9076 0.109132 GAGCCGCCAATTTCAACCTG 60.109 55.000 0.00 0.00 0.00 4.00
5955 9077 0.251341 AGAGCCGCCAATTTCAACCT 60.251 50.000 0.00 0.00 0.00 3.50
5956 9078 0.109132 CAGAGCCGCCAATTTCAACC 60.109 55.000 0.00 0.00 0.00 3.77
5957 9079 0.109132 CCAGAGCCGCCAATTTCAAC 60.109 55.000 0.00 0.00 0.00 3.18
5958 9080 0.539438 ACCAGAGCCGCCAATTTCAA 60.539 50.000 0.00 0.00 0.00 2.69
5959 9081 0.539438 AACCAGAGCCGCCAATTTCA 60.539 50.000 0.00 0.00 0.00 2.69
5960 9082 0.171231 GAACCAGAGCCGCCAATTTC 59.829 55.000 0.00 0.00 0.00 2.17
5961 9083 1.586154 CGAACCAGAGCCGCCAATTT 61.586 55.000 0.00 0.00 0.00 1.82
5962 9084 2.040544 CGAACCAGAGCCGCCAATT 61.041 57.895 0.00 0.00 0.00 2.32
5963 9085 2.436646 CGAACCAGAGCCGCCAAT 60.437 61.111 0.00 0.00 0.00 3.16
5964 9086 3.876589 GACGAACCAGAGCCGCCAA 62.877 63.158 0.00 0.00 0.00 4.52
5965 9087 4.373116 GACGAACCAGAGCCGCCA 62.373 66.667 0.00 0.00 0.00 5.69
5966 9088 4.373116 TGACGAACCAGAGCCGCC 62.373 66.667 0.00 0.00 0.00 6.13
5967 9089 2.811317 CTGACGAACCAGAGCCGC 60.811 66.667 0.00 0.00 36.29 6.53
5968 9090 2.125912 CCTGACGAACCAGAGCCG 60.126 66.667 0.00 0.00 36.29 5.52
5969 9091 2.435059 GCCTGACGAACCAGAGCC 60.435 66.667 0.00 0.00 36.29 4.70
5970 9092 2.029844 GTGCCTGACGAACCAGAGC 61.030 63.158 0.00 0.65 36.29 4.09
5971 9093 4.268687 GTGCCTGACGAACCAGAG 57.731 61.111 0.00 0.00 36.29 3.35
5999 9121 4.096003 AATCCCCCGACACCGCAG 62.096 66.667 0.00 0.00 0.00 5.18
6000 9122 4.402528 CAATCCCCCGACACCGCA 62.403 66.667 0.00 0.00 0.00 5.69
6002 9124 4.402528 TGCAATCCCCCGACACCG 62.403 66.667 0.00 0.00 0.00 4.94
6003 9125 2.750237 GTGCAATCCCCCGACACC 60.750 66.667 0.00 0.00 0.00 4.16
6004 9126 2.033448 TGTGCAATCCCCCGACAC 59.967 61.111 0.00 0.00 0.00 3.67
6005 9127 2.033448 GTGTGCAATCCCCCGACA 59.967 61.111 0.00 0.00 0.00 4.35
6006 9128 2.510064 TACGTGTGCAATCCCCCGAC 62.510 60.000 0.00 0.00 0.00 4.79
6007 9129 2.284276 TACGTGTGCAATCCCCCGA 61.284 57.895 0.00 0.00 0.00 5.14
6008 9130 2.104253 GTACGTGTGCAATCCCCCG 61.104 63.158 0.00 0.00 0.00 5.73
6009 9131 2.104253 CGTACGTGTGCAATCCCCC 61.104 63.158 7.22 0.00 0.00 5.40
6010 9132 0.461339 ATCGTACGTGTGCAATCCCC 60.461 55.000 16.05 0.00 0.00 4.81
6011 9133 0.650512 CATCGTACGTGTGCAATCCC 59.349 55.000 16.05 0.00 0.00 3.85
6012 9134 1.323534 GTCATCGTACGTGTGCAATCC 59.676 52.381 16.05 0.00 0.00 3.01
6013 9135 1.323534 GGTCATCGTACGTGTGCAATC 59.676 52.381 16.05 7.03 0.00 2.67
6014 9136 1.355971 GGTCATCGTACGTGTGCAAT 58.644 50.000 16.05 0.00 0.00 3.56
6015 9137 0.668096 GGGTCATCGTACGTGTGCAA 60.668 55.000 16.05 0.00 0.00 4.08
6016 9138 1.080366 GGGTCATCGTACGTGTGCA 60.080 57.895 16.05 0.00 0.00 4.57
6017 9139 1.808390 GGGGTCATCGTACGTGTGC 60.808 63.158 16.05 10.96 0.00 4.57
6018 9140 0.245539 AAGGGGTCATCGTACGTGTG 59.754 55.000 16.05 15.03 0.00 3.82
6019 9141 0.971386 AAAGGGGTCATCGTACGTGT 59.029 50.000 16.05 2.44 0.00 4.49
6020 9142 2.088950 AAAAGGGGTCATCGTACGTG 57.911 50.000 16.05 12.72 0.00 4.49
6021 9143 2.845363 AAAAAGGGGTCATCGTACGT 57.155 45.000 16.05 0.00 0.00 3.57
6039 9161 1.063266 AGGCCAGTTGTCTCCCAAAAA 60.063 47.619 5.01 0.00 34.07 1.94
6040 9162 0.555769 AGGCCAGTTGTCTCCCAAAA 59.444 50.000 5.01 0.00 34.07 2.44
6041 9163 0.110486 GAGGCCAGTTGTCTCCCAAA 59.890 55.000 5.01 0.00 34.07 3.28
6042 9164 1.059584 TGAGGCCAGTTGTCTCCCAA 61.060 55.000 5.01 0.00 0.00 4.12
6043 9165 1.059584 TTGAGGCCAGTTGTCTCCCA 61.060 55.000 5.01 0.00 0.00 4.37
6044 9166 0.606673 GTTGAGGCCAGTTGTCTCCC 60.607 60.000 5.01 0.00 0.00 4.30
6045 9167 0.606673 GGTTGAGGCCAGTTGTCTCC 60.607 60.000 5.01 0.00 0.00 3.71
6046 9168 0.951040 CGGTTGAGGCCAGTTGTCTC 60.951 60.000 5.01 0.00 0.00 3.36
6047 9169 1.071471 CGGTTGAGGCCAGTTGTCT 59.929 57.895 5.01 0.00 0.00 3.41
6048 9170 1.966451 CCGGTTGAGGCCAGTTGTC 60.966 63.158 5.01 0.00 0.00 3.18
6049 9171 2.113139 CCGGTTGAGGCCAGTTGT 59.887 61.111 5.01 0.00 0.00 3.32
6057 9179 0.251916 TGGTTATCAGCCGGTTGAGG 59.748 55.000 25.61 0.00 0.00 3.86
6058 9180 1.369625 GTGGTTATCAGCCGGTTGAG 58.630 55.000 25.61 0.00 0.00 3.02
6059 9181 0.390603 CGTGGTTATCAGCCGGTTGA 60.391 55.000 23.98 23.98 0.00 3.18
6060 9182 1.977594 GCGTGGTTATCAGCCGGTTG 61.978 60.000 12.81 12.81 0.00 3.77
6061 9183 1.743995 GCGTGGTTATCAGCCGGTT 60.744 57.895 1.90 0.00 0.00 4.44
6062 9184 2.125269 GCGTGGTTATCAGCCGGT 60.125 61.111 1.90 0.00 0.00 5.28
6063 9185 2.895372 GGCGTGGTTATCAGCCGG 60.895 66.667 0.00 0.00 40.17 6.13
6065 9187 2.895372 CCGGCGTGGTTATCAGCC 60.895 66.667 6.01 0.00 45.67 4.85
6079 9201 4.148825 CAGAAGGAGGCGGACCGG 62.149 72.222 17.22 0.00 42.76 5.28
6080 9202 4.821589 GCAGAAGGAGGCGGACCG 62.822 72.222 10.29 10.29 42.76 4.79
6086 9208 0.972883 AGGATATCGCAGAAGGAGGC 59.027 55.000 0.00 0.00 43.58 4.70
6087 9209 3.760580 AAAGGATATCGCAGAAGGAGG 57.239 47.619 0.00 0.00 43.58 4.30
6088 9210 5.866633 GTGATAAAGGATATCGCAGAAGGAG 59.133 44.000 0.00 0.00 43.58 3.69
6089 9211 5.279506 GGTGATAAAGGATATCGCAGAAGGA 60.280 44.000 10.22 0.00 43.58 3.36
6090 9212 4.932200 GGTGATAAAGGATATCGCAGAAGG 59.068 45.833 10.22 0.00 43.58 3.46
6091 9213 4.623167 CGGTGATAAAGGATATCGCAGAAG 59.377 45.833 10.22 0.00 43.58 2.85
6092 9214 4.038763 ACGGTGATAAAGGATATCGCAGAA 59.961 41.667 13.45 0.00 43.58 3.02
6093 9215 3.572682 ACGGTGATAAAGGATATCGCAGA 59.427 43.478 13.45 0.00 45.75 4.26
6094 9216 3.914312 ACGGTGATAAAGGATATCGCAG 58.086 45.455 10.22 8.76 36.47 5.18
6095 9217 4.055360 CAACGGTGATAAAGGATATCGCA 58.945 43.478 0.00 0.00 36.47 5.10
6096 9218 4.304110 TCAACGGTGATAAAGGATATCGC 58.696 43.478 0.00 1.37 34.63 4.58
6097 9219 5.529791 ACTCAACGGTGATAAAGGATATCG 58.470 41.667 2.20 0.00 31.85 2.92
6100 9222 9.923143 CAATATACTCAACGGTGATAAAGGATA 57.077 33.333 2.20 0.00 31.85 2.59
6101 9223 7.878127 CCAATATACTCAACGGTGATAAAGGAT 59.122 37.037 2.20 0.00 31.85 3.24
6102 9224 7.147620 ACCAATATACTCAACGGTGATAAAGGA 60.148 37.037 2.20 0.00 31.85 3.36
6103 9225 6.990349 ACCAATATACTCAACGGTGATAAAGG 59.010 38.462 2.20 3.05 31.85 3.11
6104 9226 8.433421 AACCAATATACTCAACGGTGATAAAG 57.567 34.615 2.20 0.00 31.85 1.85
6106 9228 9.701098 GATAACCAATATACTCAACGGTGATAA 57.299 33.333 2.20 0.00 31.85 1.75
6107 9229 8.862085 TGATAACCAATATACTCAACGGTGATA 58.138 33.333 2.20 0.00 31.85 2.15
6108 9230 7.732025 TGATAACCAATATACTCAACGGTGAT 58.268 34.615 2.20 0.00 31.85 3.06
6109 9231 7.114866 TGATAACCAATATACTCAACGGTGA 57.885 36.000 1.69 1.69 0.00 4.02
6110 9232 7.655732 TCATGATAACCAATATACTCAACGGTG 59.344 37.037 0.00 0.00 0.00 4.94
6111 9233 7.732025 TCATGATAACCAATATACTCAACGGT 58.268 34.615 0.00 0.00 0.00 4.83
6112 9234 8.601845 TTCATGATAACCAATATACTCAACGG 57.398 34.615 0.00 0.00 0.00 4.44
6140 9262 9.771534 GCAAGAACAAATCCTAGTCTATCTTAT 57.228 33.333 0.00 0.00 0.00 1.73
6141 9263 8.982723 AGCAAGAACAAATCCTAGTCTATCTTA 58.017 33.333 0.00 0.00 0.00 2.10
6142 9264 7.856415 AGCAAGAACAAATCCTAGTCTATCTT 58.144 34.615 0.00 0.00 0.00 2.40
6143 9265 7.430760 AGCAAGAACAAATCCTAGTCTATCT 57.569 36.000 0.00 0.00 0.00 1.98
6144 9266 8.394121 CAAAGCAAGAACAAATCCTAGTCTATC 58.606 37.037 0.00 0.00 0.00 2.08
6145 9267 7.885399 ACAAAGCAAGAACAAATCCTAGTCTAT 59.115 33.333 0.00 0.00 0.00 1.98
6146 9268 7.224297 ACAAAGCAAGAACAAATCCTAGTCTA 58.776 34.615 0.00 0.00 0.00 2.59
6147 9269 6.064717 ACAAAGCAAGAACAAATCCTAGTCT 58.935 36.000 0.00 0.00 0.00 3.24
6148 9270 6.205658 AGACAAAGCAAGAACAAATCCTAGTC 59.794 38.462 0.00 0.00 0.00 2.59
6149 9271 6.064717 AGACAAAGCAAGAACAAATCCTAGT 58.935 36.000 0.00 0.00 0.00 2.57
6150 9272 6.566197 AGACAAAGCAAGAACAAATCCTAG 57.434 37.500 0.00 0.00 0.00 3.02
6151 9273 6.321181 ACAAGACAAAGCAAGAACAAATCCTA 59.679 34.615 0.00 0.00 0.00 2.94
6152 9274 5.127682 ACAAGACAAAGCAAGAACAAATCCT 59.872 36.000 0.00 0.00 0.00 3.24
6153 9275 5.351458 ACAAGACAAAGCAAGAACAAATCC 58.649 37.500 0.00 0.00 0.00 3.01
6154 9276 7.196331 AGTACAAGACAAAGCAAGAACAAATC 58.804 34.615 0.00 0.00 0.00 2.17
6155 9277 7.100458 AGTACAAGACAAAGCAAGAACAAAT 57.900 32.000 0.00 0.00 0.00 2.32
6156 9278 6.509418 AGTACAAGACAAAGCAAGAACAAA 57.491 33.333 0.00 0.00 0.00 2.83
6157 9279 6.150307 TGAAGTACAAGACAAAGCAAGAACAA 59.850 34.615 0.00 0.00 0.00 2.83
6158 9280 5.645929 TGAAGTACAAGACAAAGCAAGAACA 59.354 36.000 0.00 0.00 0.00 3.18
6159 9281 6.119144 TGAAGTACAAGACAAAGCAAGAAC 57.881 37.500 0.00 0.00 0.00 3.01
6160 9282 6.318648 ACATGAAGTACAAGACAAAGCAAGAA 59.681 34.615 0.00 0.00 0.00 2.52
6161 9283 5.822519 ACATGAAGTACAAGACAAAGCAAGA 59.177 36.000 0.00 0.00 0.00 3.02
6162 9284 6.064846 ACATGAAGTACAAGACAAAGCAAG 57.935 37.500 0.00 0.00 0.00 4.01
6163 9285 7.561021 TTACATGAAGTACAAGACAAAGCAA 57.439 32.000 0.00 0.00 30.91 3.91
6164 9286 7.561021 TTTACATGAAGTACAAGACAAAGCA 57.439 32.000 0.00 0.00 30.91 3.91
6165 9287 8.289618 TGATTTACATGAAGTACAAGACAAAGC 58.710 33.333 0.00 0.00 30.91 3.51
6169 9291 9.283768 ACAATGATTTACATGAAGTACAAGACA 57.716 29.630 0.00 0.00 39.39 3.41
6196 9318 9.099071 GAGCCTCATGGACATATATATAGGAAT 57.901 37.037 11.22 0.04 34.57 3.01
6197 9319 8.067488 TGAGCCTCATGGACATATATATAGGAA 58.933 37.037 11.22 0.00 34.57 3.36
6198 9320 7.595488 TGAGCCTCATGGACATATATATAGGA 58.405 38.462 11.22 0.00 34.57 2.94
6199 9321 7.846101 TGAGCCTCATGGACATATATATAGG 57.154 40.000 2.88 2.88 34.57 2.57
6200 9322 7.871973 GCTTGAGCCTCATGGACATATATATAG 59.128 40.741 9.39 0.00 34.57 1.31
6201 9323 7.345392 TGCTTGAGCCTCATGGACATATATATA 59.655 37.037 9.39 0.00 41.18 0.86
6202 9324 6.157471 TGCTTGAGCCTCATGGACATATATAT 59.843 38.462 9.39 0.00 41.18 0.86
6203 9325 5.484998 TGCTTGAGCCTCATGGACATATATA 59.515 40.000 9.39 0.00 41.18 0.86
6204 9326 4.287845 TGCTTGAGCCTCATGGACATATAT 59.712 41.667 9.39 0.00 41.18 0.86
6205 9327 3.647590 TGCTTGAGCCTCATGGACATATA 59.352 43.478 9.39 0.00 41.18 0.86
6206 9328 2.440627 TGCTTGAGCCTCATGGACATAT 59.559 45.455 9.39 0.00 41.18 1.78
6207 9329 1.839354 TGCTTGAGCCTCATGGACATA 59.161 47.619 9.39 0.00 41.18 2.29
6208 9330 0.622136 TGCTTGAGCCTCATGGACAT 59.378 50.000 9.39 0.00 41.18 3.06
6209 9331 0.401356 TTGCTTGAGCCTCATGGACA 59.599 50.000 9.39 0.00 41.18 4.02
6210 9332 1.760192 ATTGCTTGAGCCTCATGGAC 58.240 50.000 9.39 0.00 41.18 4.02
6211 9333 2.239402 TGTATTGCTTGAGCCTCATGGA 59.761 45.455 9.39 3.84 41.18 3.41
6212 9334 2.357009 GTGTATTGCTTGAGCCTCATGG 59.643 50.000 9.39 0.96 41.18 3.66
6213 9335 2.031314 CGTGTATTGCTTGAGCCTCATG 59.969 50.000 0.00 0.00 41.18 3.07
6214 9336 2.093500 TCGTGTATTGCTTGAGCCTCAT 60.093 45.455 0.00 0.00 41.18 2.90
6215 9337 1.275010 TCGTGTATTGCTTGAGCCTCA 59.725 47.619 0.00 0.00 41.18 3.86
6216 9338 2.010145 TCGTGTATTGCTTGAGCCTC 57.990 50.000 0.00 0.00 41.18 4.70
6217 9339 2.472695 TTCGTGTATTGCTTGAGCCT 57.527 45.000 0.00 0.00 41.18 4.58
6218 9340 3.764885 AATTCGTGTATTGCTTGAGCC 57.235 42.857 0.00 0.00 41.18 4.70
6219 9341 4.672413 GCATAATTCGTGTATTGCTTGAGC 59.328 41.667 0.00 0.00 42.50 4.26
6220 9342 5.207768 GGCATAATTCGTGTATTGCTTGAG 58.792 41.667 0.00 0.00 0.00 3.02
6221 9343 4.637977 TGGCATAATTCGTGTATTGCTTGA 59.362 37.500 0.00 0.00 0.00 3.02
6222 9344 4.734854 GTGGCATAATTCGTGTATTGCTTG 59.265 41.667 0.00 0.00 0.00 4.01
6223 9345 4.202010 GGTGGCATAATTCGTGTATTGCTT 60.202 41.667 0.00 0.00 0.00 3.91
6224 9346 3.315191 GGTGGCATAATTCGTGTATTGCT 59.685 43.478 0.00 0.00 0.00 3.91
6225 9347 3.066064 TGGTGGCATAATTCGTGTATTGC 59.934 43.478 0.00 0.00 0.00 3.56
6226 9348 4.891627 TGGTGGCATAATTCGTGTATTG 57.108 40.909 0.00 0.00 0.00 1.90
6227 9349 6.374333 GGATATGGTGGCATAATTCGTGTATT 59.626 38.462 0.00 0.00 0.00 1.89
6228 9350 5.880332 GGATATGGTGGCATAATTCGTGTAT 59.120 40.000 0.00 0.00 0.00 2.29
6229 9351 5.242434 GGATATGGTGGCATAATTCGTGTA 58.758 41.667 0.00 0.00 0.00 2.90
6230 9352 4.072131 GGATATGGTGGCATAATTCGTGT 58.928 43.478 0.00 0.00 0.00 4.49
6231 9353 3.440173 GGGATATGGTGGCATAATTCGTG 59.560 47.826 0.00 0.00 0.00 4.35
6232 9354 3.330701 AGGGATATGGTGGCATAATTCGT 59.669 43.478 0.00 0.00 0.00 3.85
6233 9355 3.941483 GAGGGATATGGTGGCATAATTCG 59.059 47.826 0.00 0.00 0.00 3.34
6234 9356 4.273318 GGAGGGATATGGTGGCATAATTC 58.727 47.826 0.00 0.00 0.00 2.17
6235 9357 3.011708 GGGAGGGATATGGTGGCATAATT 59.988 47.826 0.00 0.00 0.00 1.40
6236 9358 2.582636 GGGAGGGATATGGTGGCATAAT 59.417 50.000 0.00 0.00 0.00 1.28
6237 9359 1.992557 GGGAGGGATATGGTGGCATAA 59.007 52.381 0.00 0.00 0.00 1.90
6238 9360 1.154216 AGGGAGGGATATGGTGGCATA 59.846 52.381 0.00 0.00 0.00 3.14
6239 9361 0.103715 AGGGAGGGATATGGTGGCAT 60.104 55.000 0.00 0.00 0.00 4.40
6240 9362 0.768221 GAGGGAGGGATATGGTGGCA 60.768 60.000 0.00 0.00 0.00 4.92
6241 9363 1.492993 GGAGGGAGGGATATGGTGGC 61.493 65.000 0.00 0.00 0.00 5.01
6242 9364 0.842467 GGGAGGGAGGGATATGGTGG 60.842 65.000 0.00 0.00 0.00 4.61
6243 9365 0.194587 AGGGAGGGAGGGATATGGTG 59.805 60.000 0.00 0.00 0.00 4.17
6244 9366 0.960423 AAGGGAGGGAGGGATATGGT 59.040 55.000 0.00 0.00 0.00 3.55
6245 9367 1.153132 AGAAGGGAGGGAGGGATATGG 59.847 57.143 0.00 0.00 0.00 2.74
6246 9368 2.731339 AGAAGGGAGGGAGGGATATG 57.269 55.000 0.00 0.00 0.00 1.78
6247 9369 3.475174 TGTTAGAAGGGAGGGAGGGATAT 59.525 47.826 0.00 0.00 0.00 1.63
6248 9370 2.869689 TGTTAGAAGGGAGGGAGGGATA 59.130 50.000 0.00 0.00 0.00 2.59
6249 9371 1.657162 TGTTAGAAGGGAGGGAGGGAT 59.343 52.381 0.00 0.00 0.00 3.85
6250 9372 1.098589 TGTTAGAAGGGAGGGAGGGA 58.901 55.000 0.00 0.00 0.00 4.20
6251 9373 1.771255 CATGTTAGAAGGGAGGGAGGG 59.229 57.143 0.00 0.00 0.00 4.30
6252 9374 1.771255 CCATGTTAGAAGGGAGGGAGG 59.229 57.143 0.00 0.00 0.00 4.30
6253 9375 2.482494 ACCATGTTAGAAGGGAGGGAG 58.518 52.381 0.00 0.00 0.00 4.30
6254 9376 2.661176 ACCATGTTAGAAGGGAGGGA 57.339 50.000 0.00 0.00 0.00 4.20
6255 9377 3.973973 TGATACCATGTTAGAAGGGAGGG 59.026 47.826 0.00 0.00 0.00 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.