Multiple sequence alignment - TraesCS1B01G167200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G167200 chr1B 100.000 5983 0 0 1 5983 296497709 296503691 0.000000e+00 11049.0
1 TraesCS1B01G167200 chr1B 93.906 722 43 1 5262 5983 568960614 568959894 0.000000e+00 1088.0
2 TraesCS1B01G167200 chr1B 93.103 725 44 6 5262 5983 515443482 515442761 0.000000e+00 1057.0
3 TraesCS1B01G167200 chr1D 93.394 4905 157 73 347 5167 202565571 202570392 0.000000e+00 7108.0
4 TraesCS1B01G167200 chr1D 94.262 732 39 3 5253 5983 433785765 433786494 0.000000e+00 1116.0
5 TraesCS1B01G167200 chr1D 93.361 723 45 3 5262 5983 11099030 11099750 0.000000e+00 1066.0
6 TraesCS1B01G167200 chr1D 94.872 78 1 1 1 75 202565497 202565574 1.050000e-22 119.0
7 TraesCS1B01G167200 chr1A 93.594 4777 162 48 454 5167 256823188 256827883 0.000000e+00 6994.0
8 TraesCS1B01G167200 chr1A 94.224 277 16 0 71 347 583816272 583816548 1.990000e-114 424.0
9 TraesCS1B01G167200 chr1A 92.657 286 21 0 65 350 53021982 53022267 4.310000e-111 412.0
10 TraesCS1B01G167200 chr7D 95.021 723 34 1 5261 5983 601717616 601716896 0.000000e+00 1134.0
11 TraesCS1B01G167200 chr7D 94.744 723 37 1 5261 5983 322917771 322918492 0.000000e+00 1123.0
12 TraesCS1B01G167200 chr7D 81.443 291 43 9 2767 3053 366451255 366451538 1.680000e-55 228.0
13 TraesCS1B01G167200 chr7D 82.222 90 15 1 4215 4303 449058916 449058827 6.430000e-10 76.8
14 TraesCS1B01G167200 chr2D 94.875 722 33 3 5262 5983 606976074 606976791 0.000000e+00 1125.0
15 TraesCS1B01G167200 chr2D 93.897 721 43 1 5263 5983 28407229 28406510 0.000000e+00 1086.0
16 TraesCS1B01G167200 chr2B 93.697 714 44 1 5270 5983 385909835 385909123 0.000000e+00 1068.0
17 TraesCS1B01G167200 chr5A 85.741 533 76 0 4420 4952 438472398 438471866 1.130000e-156 564.0
18 TraesCS1B01G167200 chr5A 82.430 609 101 5 1970 2575 438474852 438474247 1.480000e-145 527.0
19 TraesCS1B01G167200 chr5A 84.282 369 53 3 3948 4312 438472891 438472524 7.380000e-94 355.0
20 TraesCS1B01G167200 chr5A 77.876 452 70 25 2855 3293 438473781 438473347 2.770000e-63 254.0
21 TraesCS1B01G167200 chr5A 83.712 264 41 2 2579 2841 438474150 438473888 1.290000e-61 248.0
22 TraesCS1B01G167200 chr5A 80.205 293 44 10 2765 3052 654079753 654080036 2.190000e-49 207.0
23 TraesCS1B01G167200 chr5D 85.393 534 76 2 4420 4952 337302284 337301752 2.440000e-153 553.0
24 TraesCS1B01G167200 chr5D 81.908 608 106 4 1970 2575 337304696 337304091 1.490000e-140 510.0
25 TraesCS1B01G167200 chr5D 83.514 370 54 5 3948 4312 337302775 337302408 7.430000e-89 339.0
26 TraesCS1B01G167200 chr5D 84.470 264 39 2 2579 2841 337304015 337303753 5.950000e-65 259.0
27 TraesCS1B01G167200 chr5D 77.679 448 70 24 2855 3293 337303646 337303220 4.630000e-61 246.0
28 TraesCS1B01G167200 chr5D 79.667 300 46 12 2758 3051 115949933 115950223 1.020000e-47 202.0
29 TraesCS1B01G167200 chr5D 80.139 287 44 9 2771 3052 526880929 526881207 1.020000e-47 202.0
30 TraesCS1B01G167200 chr5B 84.601 552 83 2 4420 4970 395922339 395921789 1.130000e-151 547.0
31 TraesCS1B01G167200 chr5B 81.609 609 106 6 1970 2575 395924753 395924148 3.220000e-137 499.0
32 TraesCS1B01G167200 chr5B 93.907 279 15 1 72 350 320411186 320410910 2.580000e-113 420.0
33 TraesCS1B01G167200 chr5B 82.927 369 58 3 3948 4312 395922828 395922461 1.610000e-85 327.0
34 TraesCS1B01G167200 chr5B 84.470 264 39 2 2579 2841 395924062 395923800 5.950000e-65 259.0
35 TraesCS1B01G167200 chr5B 79.094 287 47 9 2771 3052 662961845 662962123 1.020000e-42 185.0
36 TraesCS1B01G167200 chr4A 93.684 285 18 0 65 349 713987218 713987502 1.540000e-115 427.0
37 TraesCS1B01G167200 chr4A 96.512 86 3 0 3782 3867 137968562 137968477 6.250000e-30 143.0
38 TraesCS1B01G167200 chr4A 95.506 89 3 1 3781 3868 597973790 597973878 2.250000e-29 141.0
39 TraesCS1B01G167200 chr2A 93.907 279 17 0 72 350 39930257 39930535 7.170000e-114 422.0
40 TraesCS1B01G167200 chr2A 76.068 351 74 9 2268 2613 72692706 72693051 2.220000e-39 174.0
41 TraesCS1B01G167200 chr6A 93.885 278 17 0 70 347 50269832 50270109 2.580000e-113 420.0
42 TraesCS1B01G167200 chrUn 94.161 274 16 0 74 347 40187390 40187663 9.270000e-113 418.0
43 TraesCS1B01G167200 chr3B 93.863 277 17 0 74 350 813141296 813141020 9.270000e-113 418.0
44 TraesCS1B01G167200 chr3B 77.183 504 109 3 4428 4931 525611444 525611941 7.590000e-74 289.0
45 TraesCS1B01G167200 chr3B 96.512 86 3 0 3782 3867 691448142 691448057 6.250000e-30 143.0
46 TraesCS1B01G167200 chr6B 92.958 284 20 0 74 357 518679777 518680060 1.200000e-111 414.0
47 TraesCS1B01G167200 chr7A 81.100 291 44 9 2767 3053 404473584 404473867 7.800000e-54 222.0
48 TraesCS1B01G167200 chr7A 82.222 90 15 1 4215 4303 546711328 546711417 6.430000e-10 76.8
49 TraesCS1B01G167200 chr7B 80.756 291 45 9 2767 3053 319854558 319854275 3.630000e-52 217.0
50 TraesCS1B01G167200 chr7B 76.316 304 64 8 2276 2575 466972516 466972217 8.030000e-34 156.0
51 TraesCS1B01G167200 chr7B 82.558 86 14 1 4215 4300 466970394 466970310 2.310000e-09 75.0
52 TraesCS1B01G167200 chr4B 96.629 89 2 1 3781 3868 9700503 9700415 4.830000e-31 147.0
53 TraesCS1B01G167200 chr4B 95.455 88 4 0 3782 3869 413113555 413113642 2.250000e-29 141.0
54 TraesCS1B01G167200 chr4D 96.591 88 2 1 3782 3868 5569373 5569286 1.740000e-30 145.0
55 TraesCS1B01G167200 chr4D 92.708 96 6 1 3774 3868 493345740 493345645 2.910000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G167200 chr1B 296497709 296503691 5982 False 11049.0 11049 100.00000 1 5983 1 chr1B.!!$F1 5982
1 TraesCS1B01G167200 chr1B 568959894 568960614 720 True 1088.0 1088 93.90600 5262 5983 1 chr1B.!!$R2 721
2 TraesCS1B01G167200 chr1B 515442761 515443482 721 True 1057.0 1057 93.10300 5262 5983 1 chr1B.!!$R1 721
3 TraesCS1B01G167200 chr1D 202565497 202570392 4895 False 3613.5 7108 94.13300 1 5167 2 chr1D.!!$F3 5166
4 TraesCS1B01G167200 chr1D 433785765 433786494 729 False 1116.0 1116 94.26200 5253 5983 1 chr1D.!!$F2 730
5 TraesCS1B01G167200 chr1D 11099030 11099750 720 False 1066.0 1066 93.36100 5262 5983 1 chr1D.!!$F1 721
6 TraesCS1B01G167200 chr1A 256823188 256827883 4695 False 6994.0 6994 93.59400 454 5167 1 chr1A.!!$F2 4713
7 TraesCS1B01G167200 chr7D 601716896 601717616 720 True 1134.0 1134 95.02100 5261 5983 1 chr7D.!!$R2 722
8 TraesCS1B01G167200 chr7D 322917771 322918492 721 False 1123.0 1123 94.74400 5261 5983 1 chr7D.!!$F1 722
9 TraesCS1B01G167200 chr2D 606976074 606976791 717 False 1125.0 1125 94.87500 5262 5983 1 chr2D.!!$F1 721
10 TraesCS1B01G167200 chr2D 28406510 28407229 719 True 1086.0 1086 93.89700 5263 5983 1 chr2D.!!$R1 720
11 TraesCS1B01G167200 chr2B 385909123 385909835 712 True 1068.0 1068 93.69700 5270 5983 1 chr2B.!!$R1 713
12 TraesCS1B01G167200 chr5A 438471866 438474852 2986 True 389.6 564 82.80820 1970 4952 5 chr5A.!!$R1 2982
13 TraesCS1B01G167200 chr5D 337301752 337304696 2944 True 381.4 553 82.59280 1970 4952 5 chr5D.!!$R1 2982
14 TraesCS1B01G167200 chr5B 395921789 395924753 2964 True 408.0 547 83.40175 1970 4970 4 chr5B.!!$R2 3000

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
462 509 0.035317 TCACAAGGTCGCATGCTTCT 59.965 50.0 17.13 7.29 0.00 2.85 F
1431 1534 0.042013 CGTCTACTCGGTGAGATCGC 60.042 60.0 0.00 0.00 33.32 4.58 F
3067 3380 0.179119 CGACGTAACACCCCATCCTC 60.179 60.0 0.00 0.00 0.00 3.71 F
3892 4222 0.037790 TGCCATTCGTGATCGTGTCA 60.038 50.0 0.00 0.00 38.33 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1484 1588 0.299300 CGTCGCGTCAGTTCACAAAA 59.701 50.0 5.77 0.0 0.00 2.44 R
3069 3382 0.031716 TGTCAGATGGAGGGAGGGAG 60.032 60.0 0.00 0.0 0.00 4.30 R
4949 5384 0.035439 CACACGGCTTAAGGATGGGT 60.035 55.0 4.29 0.0 0.00 4.51 R
5371 5807 0.033504 CGCGCCTTATCCTACATGGT 59.966 55.0 0.00 0.0 37.07 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 75 3.393426 TCCCCTCCTACGTAAAGATGT 57.607 47.619 0.00 0.00 0.00 3.06
72 76 4.524802 TCCCCTCCTACGTAAAGATGTA 57.475 45.455 0.00 0.00 0.00 2.29
73 77 4.870636 TCCCCTCCTACGTAAAGATGTAA 58.129 43.478 0.00 0.00 0.00 2.41
74 78 4.891756 TCCCCTCCTACGTAAAGATGTAAG 59.108 45.833 0.00 0.00 0.00 2.34
75 79 4.038883 CCCCTCCTACGTAAAGATGTAAGG 59.961 50.000 0.00 0.00 29.75 2.69
76 80 4.038883 CCCTCCTACGTAAAGATGTAAGGG 59.961 50.000 0.00 0.03 38.23 3.95
77 81 4.501058 CCTCCTACGTAAAGATGTAAGGGC 60.501 50.000 0.00 0.00 27.63 5.19
78 82 4.025360 TCCTACGTAAAGATGTAAGGGCA 58.975 43.478 0.00 0.00 0.00 5.36
79 83 4.652421 TCCTACGTAAAGATGTAAGGGCAT 59.348 41.667 0.00 0.00 0.00 4.40
80 84 4.750098 CCTACGTAAAGATGTAAGGGCATG 59.250 45.833 0.00 0.00 0.00 4.06
81 85 4.216411 ACGTAAAGATGTAAGGGCATGT 57.784 40.909 0.00 0.00 0.00 3.21
82 86 5.347620 ACGTAAAGATGTAAGGGCATGTA 57.652 39.130 0.00 0.00 0.00 2.29
83 87 5.114081 ACGTAAAGATGTAAGGGCATGTAC 58.886 41.667 0.00 0.00 0.00 2.90
84 88 5.113383 CGTAAAGATGTAAGGGCATGTACA 58.887 41.667 0.00 0.00 34.84 2.90
85 89 5.583061 CGTAAAGATGTAAGGGCATGTACAA 59.417 40.000 0.00 0.00 34.08 2.41
86 90 6.260050 CGTAAAGATGTAAGGGCATGTACAAT 59.740 38.462 0.00 0.00 34.08 2.71
87 91 6.455360 AAAGATGTAAGGGCATGTACAATG 57.545 37.500 0.00 0.12 34.08 2.82
88 92 4.464008 AGATGTAAGGGCATGTACAATGG 58.536 43.478 0.00 0.00 34.08 3.16
89 93 3.730215 TGTAAGGGCATGTACAATGGT 57.270 42.857 0.00 0.00 0.00 3.55
90 94 4.846168 TGTAAGGGCATGTACAATGGTA 57.154 40.909 0.00 0.00 0.00 3.25
105 109 8.576936 GTACAATGGTACTATCTTAAGAGTGC 57.423 38.462 11.53 7.73 45.19 4.40
106 110 6.583562 ACAATGGTACTATCTTAAGAGTGCC 58.416 40.000 19.07 19.07 46.27 5.01
109 113 4.608951 GGTACTATCTTAAGAGTGCCACG 58.391 47.826 20.26 4.74 45.63 4.94
110 114 4.097589 GGTACTATCTTAAGAGTGCCACGT 59.902 45.833 20.26 9.02 45.63 4.49
111 115 5.297776 GGTACTATCTTAAGAGTGCCACGTA 59.702 44.000 20.26 8.30 45.63 3.57
112 116 5.502153 ACTATCTTAAGAGTGCCACGTAG 57.498 43.478 11.53 7.49 0.00 3.51
113 117 3.802948 ATCTTAAGAGTGCCACGTAGG 57.197 47.619 11.53 0.00 41.84 3.18
114 118 2.799017 TCTTAAGAGTGCCACGTAGGA 58.201 47.619 0.00 0.00 41.22 2.94
115 119 3.362706 TCTTAAGAGTGCCACGTAGGAT 58.637 45.455 0.00 0.00 41.22 3.24
116 120 4.529897 TCTTAAGAGTGCCACGTAGGATA 58.470 43.478 0.00 0.00 41.22 2.59
117 121 5.138276 TCTTAAGAGTGCCACGTAGGATAT 58.862 41.667 0.00 0.00 41.22 1.63
118 122 6.301486 TCTTAAGAGTGCCACGTAGGATATA 58.699 40.000 0.00 0.00 41.22 0.86
119 123 6.946583 TCTTAAGAGTGCCACGTAGGATATAT 59.053 38.462 0.00 0.00 41.22 0.86
120 124 5.392767 AAGAGTGCCACGTAGGATATATG 57.607 43.478 8.04 0.00 41.22 1.78
121 125 3.764434 AGAGTGCCACGTAGGATATATGG 59.236 47.826 8.04 0.00 41.22 2.74
122 126 3.507411 AGTGCCACGTAGGATATATGGT 58.493 45.455 8.04 0.00 41.22 3.55
123 127 4.669700 AGTGCCACGTAGGATATATGGTA 58.330 43.478 8.04 0.00 41.22 3.25
124 128 5.081728 AGTGCCACGTAGGATATATGGTAA 58.918 41.667 8.04 0.00 41.22 2.85
125 129 5.185249 AGTGCCACGTAGGATATATGGTAAG 59.815 44.000 8.04 0.00 41.22 2.34
126 130 4.464951 TGCCACGTAGGATATATGGTAAGG 59.535 45.833 8.04 0.00 41.22 2.69
127 131 4.465305 GCCACGTAGGATATATGGTAAGGT 59.535 45.833 8.04 0.00 41.22 3.50
128 132 5.623824 GCCACGTAGGATATATGGTAAGGTG 60.624 48.000 8.04 0.00 41.22 4.00
129 133 5.105473 CCACGTAGGATATATGGTAAGGTGG 60.105 48.000 0.00 1.34 41.22 4.61
130 134 5.713389 CACGTAGGATATATGGTAAGGTGGA 59.287 44.000 0.00 0.00 0.00 4.02
131 135 5.950549 ACGTAGGATATATGGTAAGGTGGAG 59.049 44.000 0.00 0.00 0.00 3.86
132 136 5.360144 CGTAGGATATATGGTAAGGTGGAGG 59.640 48.000 0.00 0.00 0.00 4.30
133 137 5.633473 AGGATATATGGTAAGGTGGAGGA 57.367 43.478 0.00 0.00 0.00 3.71
134 138 5.594777 AGGATATATGGTAAGGTGGAGGAG 58.405 45.833 0.00 0.00 0.00 3.69
135 139 5.318889 AGGATATATGGTAAGGTGGAGGAGA 59.681 44.000 0.00 0.00 0.00 3.71
136 140 5.659079 GGATATATGGTAAGGTGGAGGAGAG 59.341 48.000 0.00 0.00 0.00 3.20
137 141 4.834406 ATATGGTAAGGTGGAGGAGAGA 57.166 45.455 0.00 0.00 0.00 3.10
138 142 2.534042 TGGTAAGGTGGAGGAGAGAG 57.466 55.000 0.00 0.00 0.00 3.20
139 143 2.000803 TGGTAAGGTGGAGGAGAGAGA 58.999 52.381 0.00 0.00 0.00 3.10
140 144 2.382305 TGGTAAGGTGGAGGAGAGAGAA 59.618 50.000 0.00 0.00 0.00 2.87
141 145 2.761767 GGTAAGGTGGAGGAGAGAGAAC 59.238 54.545 0.00 0.00 0.00 3.01
142 146 3.564790 GGTAAGGTGGAGGAGAGAGAACT 60.565 52.174 0.00 0.00 0.00 3.01
143 147 2.525105 AGGTGGAGGAGAGAGAACTC 57.475 55.000 0.00 0.00 42.90 3.01
144 148 1.713647 AGGTGGAGGAGAGAGAACTCA 59.286 52.381 4.64 0.00 44.79 3.41
145 149 2.314549 AGGTGGAGGAGAGAGAACTCAT 59.685 50.000 4.64 0.00 44.79 2.90
146 150 3.529734 AGGTGGAGGAGAGAGAACTCATA 59.470 47.826 4.64 0.00 44.79 2.15
147 151 4.017037 AGGTGGAGGAGAGAGAACTCATAA 60.017 45.833 4.64 0.00 44.79 1.90
148 152 4.340950 GGTGGAGGAGAGAGAACTCATAAG 59.659 50.000 4.64 0.00 44.79 1.73
149 153 5.197451 GTGGAGGAGAGAGAACTCATAAGA 58.803 45.833 4.64 0.00 44.79 2.10
150 154 5.654650 GTGGAGGAGAGAGAACTCATAAGAA 59.345 44.000 4.64 0.00 44.79 2.52
151 155 6.153680 GTGGAGGAGAGAGAACTCATAAGAAA 59.846 42.308 4.64 0.00 44.79 2.52
152 156 6.726299 TGGAGGAGAGAGAACTCATAAGAAAA 59.274 38.462 4.64 0.00 44.79 2.29
153 157 7.093552 TGGAGGAGAGAGAACTCATAAGAAAAG 60.094 40.741 4.64 0.00 44.79 2.27
154 158 7.123547 GGAGGAGAGAGAACTCATAAGAAAAGA 59.876 40.741 4.64 0.00 44.79 2.52
155 159 7.836842 AGGAGAGAGAACTCATAAGAAAAGAC 58.163 38.462 4.64 0.00 44.79 3.01
156 160 7.673926 AGGAGAGAGAACTCATAAGAAAAGACT 59.326 37.037 4.64 0.00 44.79 3.24
157 161 8.311109 GGAGAGAGAACTCATAAGAAAAGACTT 58.689 37.037 4.64 0.00 44.79 3.01
158 162 9.139174 GAGAGAGAACTCATAAGAAAAGACTTG 57.861 37.037 4.64 0.00 44.79 3.16
159 163 8.646900 AGAGAGAACTCATAAGAAAAGACTTGT 58.353 33.333 4.64 0.00 44.79 3.16
160 164 8.825667 AGAGAACTCATAAGAAAAGACTTGTC 57.174 34.615 0.00 0.00 0.00 3.18
161 165 8.646900 AGAGAACTCATAAGAAAAGACTTGTCT 58.353 33.333 1.69 1.69 0.00 3.41
162 166 9.267084 GAGAACTCATAAGAAAAGACTTGTCTT 57.733 33.333 21.59 21.59 35.77 3.01
163 167 9.267084 AGAACTCATAAGAAAAGACTTGTCTTC 57.733 33.333 21.53 8.09 33.70 2.87
164 168 9.267084 GAACTCATAAGAAAAGACTTGTCTTCT 57.733 33.333 21.53 11.28 33.70 2.85
165 169 8.825667 ACTCATAAGAAAAGACTTGTCTTCTC 57.174 34.615 21.53 11.71 33.70 2.87
166 170 8.646900 ACTCATAAGAAAAGACTTGTCTTCTCT 58.353 33.333 21.53 13.63 33.70 3.10
167 171 9.487790 CTCATAAGAAAAGACTTGTCTTCTCTT 57.512 33.333 25.61 25.61 39.50 2.85
209 213 8.464770 GAGATGATCTCTTAGCACAATATGTC 57.535 38.462 14.98 0.00 40.30 3.06
210 214 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
211 215 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
212 216 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
213 217 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
214 218 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
215 219 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
216 220 6.098838 TCTCTTAGCACAATATGTCTCACCAT 59.901 38.462 0.00 0.00 0.00 3.55
217 221 6.051074 TCTTAGCACAATATGTCTCACCATG 58.949 40.000 0.00 0.00 0.00 3.66
218 222 4.226427 AGCACAATATGTCTCACCATGT 57.774 40.909 0.00 0.00 0.00 3.21
219 223 4.592942 AGCACAATATGTCTCACCATGTT 58.407 39.130 0.00 0.00 0.00 2.71
220 224 5.012239 AGCACAATATGTCTCACCATGTTT 58.988 37.500 0.00 0.00 0.00 2.83
221 225 5.477984 AGCACAATATGTCTCACCATGTTTT 59.522 36.000 0.00 0.00 0.00 2.43
222 226 6.015180 AGCACAATATGTCTCACCATGTTTTT 60.015 34.615 0.00 0.00 0.00 1.94
223 227 7.176515 AGCACAATATGTCTCACCATGTTTTTA 59.823 33.333 0.00 0.00 0.00 1.52
224 228 7.485913 GCACAATATGTCTCACCATGTTTTTAG 59.514 37.037 0.00 0.00 0.00 1.85
225 229 7.970061 CACAATATGTCTCACCATGTTTTTAGG 59.030 37.037 0.00 0.00 0.00 2.69
226 230 7.888021 ACAATATGTCTCACCATGTTTTTAGGA 59.112 33.333 0.00 0.00 0.00 2.94
227 231 8.739039 CAATATGTCTCACCATGTTTTTAGGAA 58.261 33.333 0.00 0.00 0.00 3.36
228 232 9.479549 AATATGTCTCACCATGTTTTTAGGAAT 57.520 29.630 0.00 0.00 0.00 3.01
230 234 8.877864 ATGTCTCACCATGTTTTTAGGAATAA 57.122 30.769 0.00 0.00 0.00 1.40
231 235 8.106247 TGTCTCACCATGTTTTTAGGAATAAC 57.894 34.615 0.00 0.00 0.00 1.89
232 236 7.942341 TGTCTCACCATGTTTTTAGGAATAACT 59.058 33.333 0.00 0.00 0.00 2.24
233 237 9.444600 GTCTCACCATGTTTTTAGGAATAACTA 57.555 33.333 0.00 0.00 0.00 2.24
261 265 9.988815 TTATTGAAGATAAGGCTAAGAGATGAC 57.011 33.333 0.00 0.00 0.00 3.06
262 266 6.412362 TGAAGATAAGGCTAAGAGATGACC 57.588 41.667 0.00 0.00 0.00 4.02
263 267 5.305644 TGAAGATAAGGCTAAGAGATGACCC 59.694 44.000 0.00 0.00 0.00 4.46
264 268 4.820775 AGATAAGGCTAAGAGATGACCCA 58.179 43.478 0.00 0.00 0.00 4.51
265 269 5.410602 AGATAAGGCTAAGAGATGACCCAT 58.589 41.667 0.00 0.00 0.00 4.00
266 270 5.848921 AGATAAGGCTAAGAGATGACCCATT 59.151 40.000 0.00 0.00 0.00 3.16
267 271 3.853355 AGGCTAAGAGATGACCCATTG 57.147 47.619 0.00 0.00 0.00 2.82
268 272 3.118531 AGGCTAAGAGATGACCCATTGT 58.881 45.455 0.00 0.00 0.00 2.71
269 273 4.298626 AGGCTAAGAGATGACCCATTGTA 58.701 43.478 0.00 0.00 0.00 2.41
270 274 4.346418 AGGCTAAGAGATGACCCATTGTAG 59.654 45.833 0.00 0.00 0.00 2.74
271 275 4.345257 GGCTAAGAGATGACCCATTGTAGA 59.655 45.833 0.00 0.00 0.00 2.59
272 276 5.293560 GCTAAGAGATGACCCATTGTAGAC 58.706 45.833 0.00 0.00 0.00 2.59
273 277 5.163405 GCTAAGAGATGACCCATTGTAGACA 60.163 44.000 0.00 0.00 0.00 3.41
274 278 5.762179 AAGAGATGACCCATTGTAGACAA 57.238 39.130 0.00 0.00 40.51 3.18
275 279 5.762179 AGAGATGACCCATTGTAGACAAA 57.238 39.130 0.00 0.00 39.55 2.83
276 280 6.319048 AGAGATGACCCATTGTAGACAAAT 57.681 37.500 0.00 0.00 39.55 2.32
277 281 6.725364 AGAGATGACCCATTGTAGACAAATT 58.275 36.000 0.00 0.00 39.55 1.82
278 282 7.177878 AGAGATGACCCATTGTAGACAAATTT 58.822 34.615 0.00 0.00 39.55 1.82
279 283 7.671398 AGAGATGACCCATTGTAGACAAATTTT 59.329 33.333 0.00 0.00 39.55 1.82
280 284 8.193953 AGATGACCCATTGTAGACAAATTTTT 57.806 30.769 0.00 0.00 39.55 1.94
342 346 9.770097 AGACTATCTTATCAACCATTGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
343 347 8.383318 ACTATCTTATCAACCATTGTACATGC 57.617 34.615 0.00 0.00 0.00 4.06
344 348 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
345 349 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
376 380 5.045651 TGCTCACCAATGAATAGAGAGGAAA 60.046 40.000 0.00 0.00 33.30 3.13
377 381 5.882557 GCTCACCAATGAATAGAGAGGAAAA 59.117 40.000 0.00 0.00 33.30 2.29
458 505 2.870372 GGTCACAAGGTCGCATGC 59.130 61.111 7.91 7.91 0.00 4.06
462 509 0.035317 TCACAAGGTCGCATGCTTCT 59.965 50.000 17.13 7.29 0.00 2.85
463 510 0.445436 CACAAGGTCGCATGCTTCTC 59.555 55.000 17.13 2.67 0.00 2.87
464 511 0.674895 ACAAGGTCGCATGCTTCTCC 60.675 55.000 17.13 11.99 0.00 3.71
465 512 1.078143 AAGGTCGCATGCTTCTCCC 60.078 57.895 17.13 7.89 0.00 4.30
513 560 2.057316 CTGACTTGAAGCTCACTCACG 58.943 52.381 0.00 0.00 0.00 4.35
609 660 2.594592 GCTTGCTTCACCCACGGT 60.595 61.111 0.00 0.00 35.62 4.83
678 739 2.797087 GCATTTTCCATCCATCACGCAG 60.797 50.000 0.00 0.00 0.00 5.18
695 756 2.747436 GCAGGTCCTTTTTGCTTCAAG 58.253 47.619 0.00 0.00 35.05 3.02
751 813 0.535102 AAGAAACACCAGACGCAGGG 60.535 55.000 0.00 0.00 0.00 4.45
813 891 3.507233 CCTTGGCTTGTGCTCTAATCAAA 59.493 43.478 0.00 0.00 39.59 2.69
889 980 4.677584 CGCCATCTAAGCTATATCACCTC 58.322 47.826 0.00 0.00 0.00 3.85
890 981 4.400884 CGCCATCTAAGCTATATCACCTCT 59.599 45.833 0.00 0.00 0.00 3.69
942 1033 2.529136 CACCCCTCCACCACCAGA 60.529 66.667 0.00 0.00 0.00 3.86
943 1034 2.529389 ACCCCTCCACCACCAGAC 60.529 66.667 0.00 0.00 0.00 3.51
944 1035 3.330720 CCCCTCCACCACCAGACC 61.331 72.222 0.00 0.00 0.00 3.85
954 1054 0.107017 CCACCAGACCATCATCACCC 60.107 60.000 0.00 0.00 0.00 4.61
1207 1307 0.238289 CAAGCGCCACAAAGGTACTG 59.762 55.000 2.29 0.00 40.86 2.74
1208 1308 0.179029 AAGCGCCACAAAGGTACTGT 60.179 50.000 2.29 0.00 40.86 3.55
1209 1309 0.682852 AGCGCCACAAAGGTACTGTA 59.317 50.000 2.29 0.00 40.86 2.74
1210 1310 1.278127 AGCGCCACAAAGGTACTGTAT 59.722 47.619 2.29 0.00 40.86 2.29
1211 1311 1.664151 GCGCCACAAAGGTACTGTATC 59.336 52.381 0.00 0.00 40.86 2.24
1212 1312 2.677037 GCGCCACAAAGGTACTGTATCT 60.677 50.000 0.00 0.00 40.86 1.98
1213 1313 2.930040 CGCCACAAAGGTACTGTATCTG 59.070 50.000 0.49 0.00 40.86 2.90
1214 1314 2.678336 GCCACAAAGGTACTGTATCTGC 59.322 50.000 0.49 0.00 40.86 4.26
1215 1315 3.270877 CCACAAAGGTACTGTATCTGCC 58.729 50.000 0.49 0.00 40.86 4.85
1216 1316 3.307410 CCACAAAGGTACTGTATCTGCCA 60.307 47.826 0.49 0.00 40.86 4.92
1217 1317 4.517285 CACAAAGGTACTGTATCTGCCAT 58.483 43.478 0.49 0.00 40.86 4.40
1218 1318 4.333649 CACAAAGGTACTGTATCTGCCATG 59.666 45.833 0.49 2.32 40.86 3.66
1219 1319 4.019321 ACAAAGGTACTGTATCTGCCATGT 60.019 41.667 0.49 2.90 40.86 3.21
1220 1320 4.844349 AAGGTACTGTATCTGCCATGTT 57.156 40.909 0.49 0.00 40.86 2.71
1221 1321 5.950544 AAGGTACTGTATCTGCCATGTTA 57.049 39.130 0.49 0.00 40.86 2.41
1222 1322 6.500589 AAGGTACTGTATCTGCCATGTTAT 57.499 37.500 0.49 0.00 40.86 1.89
1223 1323 5.858381 AGGTACTGTATCTGCCATGTTATG 58.142 41.667 0.00 0.00 37.18 1.90
1224 1324 5.366768 AGGTACTGTATCTGCCATGTTATGT 59.633 40.000 0.00 0.00 37.18 2.29
1236 1336 3.068024 CCATGTTATGTACCCACATTGGC 59.932 47.826 0.00 0.00 42.98 4.52
1239 1339 2.612212 GTTATGTACCCACATTGGCTCG 59.388 50.000 0.00 0.00 42.98 5.03
1240 1340 0.618458 ATGTACCCACATTGGCTCGT 59.382 50.000 0.00 0.00 42.98 4.18
1243 1343 2.038689 TGTACCCACATTGGCTCGTAAA 59.961 45.455 0.00 0.00 35.79 2.01
1245 1345 0.446222 CCCACATTGGCTCGTAAACG 59.554 55.000 0.00 0.00 35.79 3.60
1247 1347 0.179200 CACATTGGCTCGTAAACGGC 60.179 55.000 2.24 5.19 40.29 5.68
1253 1353 1.785951 GCTCGTAAACGGCCAGTTC 59.214 57.895 12.33 2.35 43.37 3.01
1284 1387 2.161855 TCATCACAACTGGGCACATTC 58.838 47.619 0.00 0.00 0.00 2.67
1307 1410 0.456221 CGGAATCTACTGTCGCAGGT 59.544 55.000 10.80 0.00 35.51 4.00
1367 1470 3.567164 TGGACGACTTAGAAGACGAGTTT 59.433 43.478 18.41 0.00 44.69 2.66
1373 1476 5.530712 GACTTAGAAGACGAGTTTCAGGTT 58.469 41.667 0.00 0.00 0.00 3.50
1431 1534 0.042013 CGTCTACTCGGTGAGATCGC 60.042 60.000 0.00 0.00 33.32 4.58
1444 1547 3.125146 GTGAGATCGCTGTGCAATGTTTA 59.875 43.478 0.00 0.00 0.00 2.01
1445 1548 3.125146 TGAGATCGCTGTGCAATGTTTAC 59.875 43.478 0.00 0.00 0.00 2.01
1446 1549 3.338249 AGATCGCTGTGCAATGTTTACT 58.662 40.909 0.00 0.00 0.00 2.24
1447 1550 2.967459 TCGCTGTGCAATGTTTACTG 57.033 45.000 0.00 0.00 0.00 2.74
1448 1551 1.535028 TCGCTGTGCAATGTTTACTGG 59.465 47.619 0.00 0.00 0.00 4.00
1449 1552 1.535028 CGCTGTGCAATGTTTACTGGA 59.465 47.619 0.00 0.00 0.00 3.86
1450 1553 2.413239 CGCTGTGCAATGTTTACTGGAG 60.413 50.000 0.00 0.00 0.00 3.86
1451 1554 2.554032 GCTGTGCAATGTTTACTGGAGT 59.446 45.455 0.00 0.00 0.00 3.85
1463 1566 6.801575 TGTTTACTGGAGTCCATTTTTGAAC 58.198 36.000 13.56 11.96 30.82 3.18
1466 1569 5.930837 ACTGGAGTCCATTTTTGAACAAA 57.069 34.783 13.56 0.00 30.82 2.83
1477 1581 0.741915 TTGAACAAACCAACCGAGCC 59.258 50.000 0.00 0.00 0.00 4.70
1482 1586 2.190841 AAACCAACCGAGCCAACCG 61.191 57.895 0.00 0.00 0.00 4.44
1484 1588 2.593436 CCAACCGAGCCAACCGTT 60.593 61.111 0.00 0.00 0.00 4.44
1693 1799 2.859538 GGTGTGTGTTGATTTTGCAGTG 59.140 45.455 0.00 0.00 0.00 3.66
1909 2020 2.746269 GCTGACCAACAACGTAGTACA 58.254 47.619 0.38 0.00 45.00 2.90
1910 2021 2.473984 GCTGACCAACAACGTAGTACAC 59.526 50.000 0.38 0.00 45.00 2.90
1911 2022 3.797865 GCTGACCAACAACGTAGTACACT 60.798 47.826 0.38 0.00 45.00 3.55
1912 2023 4.557296 GCTGACCAACAACGTAGTACACTA 60.557 45.833 0.38 0.00 45.00 2.74
1928 2039 6.042144 GTACACTAGTACGTGGTACTCATC 57.958 45.833 11.39 0.00 44.86 2.92
1945 2056 2.500795 CGCGCGCCGAAATGAAAA 60.501 55.556 27.72 0.00 40.02 2.29
1946 2057 1.867373 CGCGCGCCGAAATGAAAAT 60.867 52.632 27.72 0.00 40.02 1.82
1948 2059 1.741947 GCGCGCCGAAATGAAAATGG 61.742 55.000 23.24 0.00 0.00 3.16
1951 2062 2.119457 GCGCCGAAATGAAAATGGATC 58.881 47.619 0.00 0.00 0.00 3.36
1952 2063 2.223572 GCGCCGAAATGAAAATGGATCT 60.224 45.455 0.00 0.00 0.00 2.75
1954 2065 4.320494 GCGCCGAAATGAAAATGGATCTAT 60.320 41.667 0.00 0.00 0.00 1.98
1955 2066 5.149273 CGCCGAAATGAAAATGGATCTATG 58.851 41.667 0.00 0.00 0.00 2.23
2217 2341 2.413142 GGAGACGTACCTGGACCGG 61.413 68.421 0.00 0.00 0.00 5.28
2220 2344 3.352338 GACGTACCTGGACCGGCTG 62.352 68.421 0.00 0.00 0.00 4.85
3060 3373 2.323059 GTCTTCTTCGACGTAACACCC 58.677 52.381 0.00 0.00 0.00 4.61
3061 3374 1.270550 TCTTCTTCGACGTAACACCCC 59.729 52.381 0.00 0.00 0.00 4.95
3062 3375 1.000060 CTTCTTCGACGTAACACCCCA 60.000 52.381 0.00 0.00 0.00 4.96
3063 3376 1.259609 TCTTCGACGTAACACCCCAT 58.740 50.000 0.00 0.00 0.00 4.00
3064 3377 1.203052 TCTTCGACGTAACACCCCATC 59.797 52.381 0.00 0.00 0.00 3.51
3065 3378 0.247185 TTCGACGTAACACCCCATCC 59.753 55.000 0.00 0.00 0.00 3.51
3066 3379 0.612732 TCGACGTAACACCCCATCCT 60.613 55.000 0.00 0.00 0.00 3.24
3067 3380 0.179119 CGACGTAACACCCCATCCTC 60.179 60.000 0.00 0.00 0.00 3.71
3068 3381 0.177373 GACGTAACACCCCATCCTCC 59.823 60.000 0.00 0.00 0.00 4.30
3069 3382 1.269703 ACGTAACACCCCATCCTCCC 61.270 60.000 0.00 0.00 0.00 4.30
3070 3383 0.981277 CGTAACACCCCATCCTCCCT 60.981 60.000 0.00 0.00 0.00 4.20
3078 3391 2.731461 CCATCCTCCCTCCCTCCCT 61.731 68.421 0.00 0.00 0.00 4.20
3079 3392 1.152139 CATCCTCCCTCCCTCCCTC 60.152 68.421 0.00 0.00 0.00 4.30
3081 3394 3.368501 CCTCCCTCCCTCCCTCCA 61.369 72.222 0.00 0.00 0.00 3.86
3090 3403 0.326048 CCCTCCCTCCATCTGACACT 60.326 60.000 0.00 0.00 0.00 3.55
3092 3405 1.484240 CCTCCCTCCATCTGACACTTC 59.516 57.143 0.00 0.00 0.00 3.01
3093 3406 1.135915 CTCCCTCCATCTGACACTTCG 59.864 57.143 0.00 0.00 0.00 3.79
3145 3466 1.865788 ATGATGTGGTGTGGCGTTGC 61.866 55.000 0.00 0.00 0.00 4.17
3180 3504 2.690881 AAGGGGCTGGACGGCATA 60.691 61.111 5.39 0.00 40.61 3.14
3198 3522 4.011517 CAGGGCCCGGTGTACGTT 62.012 66.667 18.44 0.00 42.24 3.99
3342 3666 2.281484 GGGAAGCACCGCAAGTCA 60.281 61.111 0.00 0.00 40.11 3.41
3351 3675 1.002468 CACCGCAAGTCAAACAAGGAG 60.002 52.381 0.00 0.00 0.00 3.69
3725 4054 1.743394 GTGGGGCAAAGAGGTAAATCG 59.257 52.381 0.00 0.00 0.00 3.34
3732 4061 4.933400 GGCAAAGAGGTAAATCGTTCAGTA 59.067 41.667 0.00 0.00 0.00 2.74
3733 4062 5.585047 GGCAAAGAGGTAAATCGTTCAGTAT 59.415 40.000 0.00 0.00 0.00 2.12
3734 4063 6.093633 GGCAAAGAGGTAAATCGTTCAGTATT 59.906 38.462 0.00 0.00 0.00 1.89
3736 4065 8.662141 GCAAAGAGGTAAATCGTTCAGTATTTA 58.338 33.333 0.00 0.00 0.00 1.40
3740 4069 9.367444 AGAGGTAAATCGTTCAGTATTTAGTTG 57.633 33.333 0.00 0.00 30.34 3.16
3742 4071 7.822822 AGGTAAATCGTTCAGTATTTAGTTGCT 59.177 33.333 0.00 0.00 30.34 3.91
3743 4072 9.090692 GGTAAATCGTTCAGTATTTAGTTGCTA 57.909 33.333 0.00 0.00 30.34 3.49
3745 4074 8.773404 AAATCGTTCAGTATTTAGTTGCTAGT 57.227 30.769 0.00 0.00 0.00 2.57
3746 4075 8.773404 AATCGTTCAGTATTTAGTTGCTAGTT 57.227 30.769 0.00 0.00 0.00 2.24
3747 4076 7.576750 TCGTTCAGTATTTAGTTGCTAGTTG 57.423 36.000 0.00 0.00 0.00 3.16
3748 4077 6.090358 TCGTTCAGTATTTAGTTGCTAGTTGC 59.910 38.462 0.00 0.00 43.25 4.17
3749 4078 6.090898 CGTTCAGTATTTAGTTGCTAGTTGCT 59.909 38.462 0.00 0.00 43.37 3.91
3750 4079 7.457060 GTTCAGTATTTAGTTGCTAGTTGCTC 58.543 38.462 0.00 0.00 43.37 4.26
3851 4181 6.363065 CAGGGTACTATTCTACCACTAGACA 58.637 44.000 0.00 0.00 38.41 3.41
3871 4201 1.153208 CTGGTGCCTGGATGAGCTC 60.153 63.158 6.82 6.82 0.00 4.09
3872 4202 1.614525 TGGTGCCTGGATGAGCTCT 60.615 57.895 16.19 0.00 0.00 4.09
3884 4214 0.321346 TGAGCTCTTGCCATTCGTGA 59.679 50.000 16.19 0.00 40.80 4.35
3885 4215 1.065926 TGAGCTCTTGCCATTCGTGAT 60.066 47.619 16.19 0.00 40.80 3.06
3886 4216 1.596727 GAGCTCTTGCCATTCGTGATC 59.403 52.381 6.43 0.00 40.80 2.92
3887 4217 0.302890 GCTCTTGCCATTCGTGATCG 59.697 55.000 0.00 0.00 38.55 3.69
3888 4218 1.645034 CTCTTGCCATTCGTGATCGT 58.355 50.000 0.00 0.00 38.33 3.73
3889 4219 1.325640 CTCTTGCCATTCGTGATCGTG 59.674 52.381 0.00 0.00 38.33 4.35
3890 4220 1.078709 CTTGCCATTCGTGATCGTGT 58.921 50.000 0.00 0.00 38.33 4.49
3891 4221 1.061131 CTTGCCATTCGTGATCGTGTC 59.939 52.381 0.00 0.00 38.33 3.67
3892 4222 0.037790 TGCCATTCGTGATCGTGTCA 60.038 50.000 0.00 0.00 38.33 3.58
3896 4226 3.190079 CCATTCGTGATCGTGTCATTCT 58.810 45.455 0.00 0.00 39.48 2.40
3901 4231 3.859386 TCGTGATCGTGTCATTCTCATTG 59.141 43.478 0.00 0.00 39.48 2.82
3902 4232 3.859386 CGTGATCGTGTCATTCTCATTGA 59.141 43.478 0.00 0.00 39.48 2.57
3904 4234 5.687285 CGTGATCGTGTCATTCTCATTGATA 59.313 40.000 0.00 0.00 39.48 2.15
3906 4236 7.562412 GTGATCGTGTCATTCTCATTGATAAG 58.438 38.462 0.00 0.00 39.48 1.73
3912 4242 7.007725 CGTGTCATTCTCATTGATAAGTTTTGC 59.992 37.037 0.00 0.00 0.00 3.68
4026 4363 2.847234 TGCCGTGGGTGGAAGTCT 60.847 61.111 0.00 0.00 0.00 3.24
4062 4399 4.697756 CGGCCAGCGTTCAAGGGA 62.698 66.667 2.24 0.00 0.00 4.20
4245 4585 1.985622 TCACCTCCATTCCCCTCATT 58.014 50.000 0.00 0.00 0.00 2.57
4344 4684 2.595463 GCAAGCTGTGGTCTGCCA 60.595 61.111 0.00 0.00 43.73 4.92
4368 4708 0.537143 TGGCAAGCAAGTGATCGGTT 60.537 50.000 0.00 0.00 0.00 4.44
4387 4727 4.903010 GTGACCGTGCGTGGGTGT 62.903 66.667 0.00 0.00 38.07 4.16
4667 5102 3.165875 CCTCTACCTCTTCAAGTGGACA 58.834 50.000 12.62 0.00 33.31 4.02
4949 5384 1.610086 CATTGCCAAGCCCAAGGGA 60.610 57.895 9.92 0.00 37.50 4.20
4986 5421 2.289631 TGTGGAGTACAGTGCTGATTGG 60.290 50.000 6.17 0.00 33.42 3.16
4995 5430 3.009033 ACAGTGCTGATTGGCCTTAGTTA 59.991 43.478 3.32 0.00 0.00 2.24
5113 5548 6.041637 AGGGGGTTTCAAGTTGTAAGAATTTC 59.958 38.462 2.11 0.00 0.00 2.17
5156 5591 2.485814 GGAAGGACACTGTTTCTGCATC 59.514 50.000 0.00 0.00 0.00 3.91
5167 5602 6.699204 CACTGTTTCTGCATCTCTATCGTTAT 59.301 38.462 0.00 0.00 0.00 1.89
5168 5603 6.699204 ACTGTTTCTGCATCTCTATCGTTATG 59.301 38.462 0.00 0.00 0.00 1.90
5169 5604 6.805713 TGTTTCTGCATCTCTATCGTTATGA 58.194 36.000 0.00 0.00 0.00 2.15
5170 5605 6.920210 TGTTTCTGCATCTCTATCGTTATGAG 59.080 38.462 0.00 0.00 0.00 2.90
5171 5606 5.053140 TCTGCATCTCTATCGTTATGAGC 57.947 43.478 0.00 0.00 0.00 4.26
5172 5607 4.520492 TCTGCATCTCTATCGTTATGAGCA 59.480 41.667 0.00 0.00 0.00 4.26
5173 5608 5.184671 TCTGCATCTCTATCGTTATGAGCAT 59.815 40.000 0.00 0.00 0.00 3.79
5174 5609 6.375455 TCTGCATCTCTATCGTTATGAGCATA 59.625 38.462 0.00 0.00 0.00 3.14
5175 5610 6.924111 TGCATCTCTATCGTTATGAGCATAA 58.076 36.000 0.00 0.00 0.00 1.90
5176 5611 7.550712 TGCATCTCTATCGTTATGAGCATAAT 58.449 34.615 6.24 0.00 35.90 1.28
5177 5612 8.037166 TGCATCTCTATCGTTATGAGCATAATT 58.963 33.333 6.24 0.00 35.90 1.40
5178 5613 8.877779 GCATCTCTATCGTTATGAGCATAATTT 58.122 33.333 6.24 0.00 35.90 1.82
5187 5622 9.611284 TCGTTATGAGCATAATTTATTTGATGC 57.389 29.630 6.24 1.15 44.05 3.91
5188 5623 8.853345 CGTTATGAGCATAATTTATTTGATGCC 58.147 33.333 6.24 0.00 44.65 4.40
5189 5624 9.695526 GTTATGAGCATAATTTATTTGATGCCA 57.304 29.630 6.24 4.40 44.65 4.92
5192 5627 9.616156 ATGAGCATAATTTATTTGATGCCAAAA 57.384 25.926 5.24 0.00 44.65 2.44
5193 5628 9.100554 TGAGCATAATTTATTTGATGCCAAAAG 57.899 29.630 5.24 0.00 44.65 2.27
5194 5629 9.101655 GAGCATAATTTATTTGATGCCAAAAGT 57.898 29.630 5.24 0.00 44.65 2.66
5195 5630 9.452287 AGCATAATTTATTTGATGCCAAAAGTT 57.548 25.926 5.24 0.00 44.65 2.66
5196 5631 9.493206 GCATAATTTATTTGATGCCAAAAGTTG 57.507 29.630 0.00 0.00 44.49 3.16
5207 5642 3.810310 CCAAAAGTTGGTAACTGCCAA 57.190 42.857 0.00 0.00 45.93 4.52
5216 5651 5.446143 TTGGTAACTGCCAAATGTTGTAG 57.554 39.130 0.00 0.00 44.67 2.74
5217 5652 4.720046 TGGTAACTGCCAAATGTTGTAGA 58.280 39.130 0.00 0.00 35.25 2.59
5218 5653 4.759693 TGGTAACTGCCAAATGTTGTAGAG 59.240 41.667 0.00 0.00 35.25 2.43
5219 5654 5.001232 GGTAACTGCCAAATGTTGTAGAGA 58.999 41.667 0.00 0.00 0.00 3.10
5220 5655 5.648092 GGTAACTGCCAAATGTTGTAGAGAT 59.352 40.000 0.00 0.00 0.00 2.75
5221 5656 6.151144 GGTAACTGCCAAATGTTGTAGAGATT 59.849 38.462 0.00 0.00 0.00 2.40
5222 5657 5.633830 ACTGCCAAATGTTGTAGAGATTG 57.366 39.130 0.00 0.00 0.00 2.67
5223 5658 4.460382 ACTGCCAAATGTTGTAGAGATTGG 59.540 41.667 0.00 0.00 0.00 3.16
5224 5659 4.406456 TGCCAAATGTTGTAGAGATTGGT 58.594 39.130 0.00 0.00 0.00 3.67
5225 5660 4.832266 TGCCAAATGTTGTAGAGATTGGTT 59.168 37.500 0.00 0.00 0.00 3.67
5226 5661 5.048083 TGCCAAATGTTGTAGAGATTGGTTC 60.048 40.000 0.00 0.00 0.00 3.62
5227 5662 5.622233 GCCAAATGTTGTAGAGATTGGTTCC 60.622 44.000 0.00 0.00 0.00 3.62
5228 5663 5.711976 CCAAATGTTGTAGAGATTGGTTCCT 59.288 40.000 0.00 0.00 0.00 3.36
5229 5664 6.209391 CCAAATGTTGTAGAGATTGGTTCCTT 59.791 38.462 0.00 0.00 0.00 3.36
5230 5665 6.824305 AATGTTGTAGAGATTGGTTCCTTG 57.176 37.500 0.00 0.00 0.00 3.61
5231 5666 4.072131 TGTTGTAGAGATTGGTTCCTTGC 58.928 43.478 0.00 0.00 0.00 4.01
5232 5667 3.350219 TGTAGAGATTGGTTCCTTGCC 57.650 47.619 0.00 0.00 0.00 4.52
5233 5668 2.642311 TGTAGAGATTGGTTCCTTGCCA 59.358 45.455 0.00 0.00 0.00 4.92
5240 5675 2.810439 TGGTTCCTTGCCAATTTTCG 57.190 45.000 0.00 0.00 32.29 3.46
5241 5676 2.035632 TGGTTCCTTGCCAATTTTCGT 58.964 42.857 0.00 0.00 32.29 3.85
5242 5677 2.432510 TGGTTCCTTGCCAATTTTCGTT 59.567 40.909 0.00 0.00 32.29 3.85
5243 5678 2.799978 GGTTCCTTGCCAATTTTCGTTG 59.200 45.455 0.00 0.00 0.00 4.10
5244 5679 2.147436 TCCTTGCCAATTTTCGTTGC 57.853 45.000 0.00 0.00 0.00 4.17
5245 5680 1.147473 CCTTGCCAATTTTCGTTGCC 58.853 50.000 0.00 0.00 0.00 4.52
5246 5681 1.539929 CCTTGCCAATTTTCGTTGCCA 60.540 47.619 0.00 0.00 0.00 4.92
5247 5682 2.208431 CTTGCCAATTTTCGTTGCCAA 58.792 42.857 0.00 0.00 0.00 4.52
5248 5683 2.540265 TGCCAATTTTCGTTGCCAAT 57.460 40.000 0.00 0.00 0.00 3.16
5249 5684 2.411904 TGCCAATTTTCGTTGCCAATC 58.588 42.857 0.00 0.00 0.00 2.67
5250 5685 2.036992 TGCCAATTTTCGTTGCCAATCT 59.963 40.909 0.00 0.00 0.00 2.40
5251 5686 2.667969 GCCAATTTTCGTTGCCAATCTC 59.332 45.455 0.00 0.00 0.00 2.75
5252 5687 3.860378 GCCAATTTTCGTTGCCAATCTCA 60.860 43.478 0.00 0.00 0.00 3.27
5253 5688 4.497300 CCAATTTTCGTTGCCAATCTCAT 58.503 39.130 0.00 0.00 0.00 2.90
5254 5689 5.649557 CCAATTTTCGTTGCCAATCTCATA 58.350 37.500 0.00 0.00 0.00 2.15
5255 5690 6.098679 CCAATTTTCGTTGCCAATCTCATAA 58.901 36.000 0.00 0.00 0.00 1.90
5256 5691 6.589523 CCAATTTTCGTTGCCAATCTCATAAA 59.410 34.615 0.00 0.00 0.00 1.40
5257 5692 7.117523 CCAATTTTCGTTGCCAATCTCATAAAA 59.882 33.333 0.00 0.00 0.00 1.52
5258 5693 7.816945 ATTTTCGTTGCCAATCTCATAAAAG 57.183 32.000 0.00 0.00 0.00 2.27
5259 5694 6.567687 TTTCGTTGCCAATCTCATAAAAGA 57.432 33.333 0.00 0.00 0.00 2.52
5356 5792 1.673760 CACGAATCTTGGCACGTTTG 58.326 50.000 0.00 0.00 36.86 2.93
5371 5807 2.952978 ACGTTTGGCCTGATTTTGTGTA 59.047 40.909 3.32 0.00 0.00 2.90
5375 5811 3.168035 TGGCCTGATTTTGTGTACCAT 57.832 42.857 3.32 0.00 0.00 3.55
5382 5818 6.122277 CCTGATTTTGTGTACCATGTAGGAT 58.878 40.000 0.00 0.00 41.22 3.24
5532 5971 1.297304 CAAACACGTCGCGCACTTT 60.297 52.632 8.75 0.00 0.00 2.66
5534 5973 3.783588 AACACGTCGCGCACTTTGC 62.784 57.895 8.75 0.00 40.69 3.68
5590 6031 1.346395 TCAGTTACTCGCACAACCCAT 59.654 47.619 0.00 0.00 0.00 4.00
5621 6062 2.493675 CAGTCGATTGGAGGAGAAGACA 59.506 50.000 0.00 0.00 0.00 3.41
5632 6073 4.340617 GAGGAGAAGACAAGAGGAGAAGA 58.659 47.826 0.00 0.00 0.00 2.87
5692 6133 2.753043 GTGGGACTCGCCGGACTA 60.753 66.667 5.05 0.00 37.63 2.59
5734 6175 3.698040 CCTGCAGATTGAAGGTAATGCTT 59.302 43.478 17.39 0.00 38.45 3.91
5766 6208 4.621274 GCTCAAAATCCTTGCCTGCATTTA 60.621 41.667 0.00 0.00 0.00 1.40
5824 6266 1.068588 CATCGAGATTCAGGCGGGTTA 59.931 52.381 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.725634 AGGAGCATTACCTAACCACTCT 58.274 45.455 0.00 0.00 35.84 3.24
80 84 7.652507 GGCACTCTTAAGATAGTACCATTGTAC 59.347 40.741 5.44 0.00 46.36 2.90
81 85 7.343574 TGGCACTCTTAAGATAGTACCATTGTA 59.656 37.037 11.15 0.00 34.81 2.41
82 86 6.156256 TGGCACTCTTAAGATAGTACCATTGT 59.844 38.462 11.15 0.00 34.81 2.71
83 87 6.480320 GTGGCACTCTTAAGATAGTACCATTG 59.520 42.308 16.06 1.11 40.43 2.82
84 88 6.583562 GTGGCACTCTTAAGATAGTACCATT 58.416 40.000 16.06 0.00 40.43 3.16
85 89 5.221263 CGTGGCACTCTTAAGATAGTACCAT 60.221 44.000 16.72 0.00 40.43 3.55
86 90 4.097437 CGTGGCACTCTTAAGATAGTACCA 59.903 45.833 16.72 11.15 36.91 3.25
87 91 4.097589 ACGTGGCACTCTTAAGATAGTACC 59.902 45.833 16.72 6.42 30.88 3.34
88 92 5.246145 ACGTGGCACTCTTAAGATAGTAC 57.754 43.478 16.72 0.00 0.00 2.73
89 93 5.530171 CCTACGTGGCACTCTTAAGATAGTA 59.470 44.000 16.72 5.41 0.00 1.82
90 94 4.338682 CCTACGTGGCACTCTTAAGATAGT 59.661 45.833 16.72 4.47 0.00 2.12
91 95 4.579340 TCCTACGTGGCACTCTTAAGATAG 59.421 45.833 16.72 2.87 35.26 2.08
92 96 4.529897 TCCTACGTGGCACTCTTAAGATA 58.470 43.478 16.72 0.00 35.26 1.98
93 97 3.362706 TCCTACGTGGCACTCTTAAGAT 58.637 45.455 16.72 0.00 35.26 2.40
94 98 2.799017 TCCTACGTGGCACTCTTAAGA 58.201 47.619 16.72 4.81 35.26 2.10
95 99 3.802948 ATCCTACGTGGCACTCTTAAG 57.197 47.619 16.72 0.00 35.26 1.85
96 100 6.071560 CCATATATCCTACGTGGCACTCTTAA 60.072 42.308 16.72 0.00 35.26 1.85
97 101 5.417894 CCATATATCCTACGTGGCACTCTTA 59.582 44.000 16.72 3.36 35.26 2.10
98 102 4.220821 CCATATATCCTACGTGGCACTCTT 59.779 45.833 16.72 2.24 35.26 2.85
99 103 3.764434 CCATATATCCTACGTGGCACTCT 59.236 47.826 16.72 2.90 35.26 3.24
100 104 3.510360 ACCATATATCCTACGTGGCACTC 59.490 47.826 16.72 0.00 33.24 3.51
101 105 3.507411 ACCATATATCCTACGTGGCACT 58.493 45.455 16.72 5.47 33.24 4.40
102 106 3.955650 ACCATATATCCTACGTGGCAC 57.044 47.619 7.79 7.79 33.24 5.01
103 107 4.464951 CCTTACCATATATCCTACGTGGCA 59.535 45.833 0.00 0.00 33.24 4.92
104 108 4.465305 ACCTTACCATATATCCTACGTGGC 59.535 45.833 0.00 0.00 33.24 5.01
105 109 5.105473 CCACCTTACCATATATCCTACGTGG 60.105 48.000 0.00 0.00 36.06 4.94
106 110 5.713389 TCCACCTTACCATATATCCTACGTG 59.287 44.000 0.00 0.00 0.00 4.49
107 111 5.895807 TCCACCTTACCATATATCCTACGT 58.104 41.667 0.00 0.00 0.00 3.57
108 112 5.360144 CCTCCACCTTACCATATATCCTACG 59.640 48.000 0.00 0.00 0.00 3.51
109 113 6.500336 TCCTCCACCTTACCATATATCCTAC 58.500 44.000 0.00 0.00 0.00 3.18
110 114 6.511445 TCTCCTCCACCTTACCATATATCCTA 59.489 42.308 0.00 0.00 0.00 2.94
111 115 5.318889 TCTCCTCCACCTTACCATATATCCT 59.681 44.000 0.00 0.00 0.00 3.24
112 116 5.590818 TCTCCTCCACCTTACCATATATCC 58.409 45.833 0.00 0.00 0.00 2.59
113 117 6.494952 TCTCTCCTCCACCTTACCATATATC 58.505 44.000 0.00 0.00 0.00 1.63
114 118 6.278239 TCTCTCTCCTCCACCTTACCATATAT 59.722 42.308 0.00 0.00 0.00 0.86
115 119 5.615692 TCTCTCTCCTCCACCTTACCATATA 59.384 44.000 0.00 0.00 0.00 0.86
116 120 4.420552 TCTCTCTCCTCCACCTTACCATAT 59.579 45.833 0.00 0.00 0.00 1.78
117 121 3.792114 TCTCTCTCCTCCACCTTACCATA 59.208 47.826 0.00 0.00 0.00 2.74
118 122 2.587777 TCTCTCTCCTCCACCTTACCAT 59.412 50.000 0.00 0.00 0.00 3.55
119 123 2.000803 TCTCTCTCCTCCACCTTACCA 58.999 52.381 0.00 0.00 0.00 3.25
120 124 2.761767 GTTCTCTCTCCTCCACCTTACC 59.238 54.545 0.00 0.00 0.00 2.85
121 125 3.697542 GAGTTCTCTCTCCTCCACCTTAC 59.302 52.174 0.00 0.00 37.68 2.34
122 126 3.333980 TGAGTTCTCTCTCCTCCACCTTA 59.666 47.826 1.53 0.00 40.98 2.69
123 127 2.110899 TGAGTTCTCTCTCCTCCACCTT 59.889 50.000 1.53 0.00 40.98 3.50
124 128 1.713647 TGAGTTCTCTCTCCTCCACCT 59.286 52.381 1.53 0.00 40.98 4.00
125 129 2.223803 TGAGTTCTCTCTCCTCCACC 57.776 55.000 1.53 0.00 40.98 4.61
126 130 5.197451 TCTTATGAGTTCTCTCTCCTCCAC 58.803 45.833 1.53 0.00 40.98 4.02
127 131 5.458451 TCTTATGAGTTCTCTCTCCTCCA 57.542 43.478 1.53 0.00 40.98 3.86
128 132 6.783708 TTTCTTATGAGTTCTCTCTCCTCC 57.216 41.667 1.53 0.00 40.98 4.30
129 133 7.973944 GTCTTTTCTTATGAGTTCTCTCTCCTC 59.026 40.741 1.53 0.00 40.98 3.71
130 134 7.673926 AGTCTTTTCTTATGAGTTCTCTCTCCT 59.326 37.037 1.53 0.00 40.98 3.69
131 135 7.836842 AGTCTTTTCTTATGAGTTCTCTCTCC 58.163 38.462 1.53 0.00 40.98 3.71
132 136 9.139174 CAAGTCTTTTCTTATGAGTTCTCTCTC 57.861 37.037 1.53 0.00 40.98 3.20
133 137 8.646900 ACAAGTCTTTTCTTATGAGTTCTCTCT 58.353 33.333 1.53 0.00 40.98 3.10
134 138 8.825667 ACAAGTCTTTTCTTATGAGTTCTCTC 57.174 34.615 1.53 0.00 40.79 3.20
135 139 8.646900 AGACAAGTCTTTTCTTATGAGTTCTCT 58.353 33.333 0.00 0.00 36.31 3.10
136 140 8.825667 AGACAAGTCTTTTCTTATGAGTTCTC 57.174 34.615 0.00 0.00 36.31 2.87
184 188 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
185 189 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
186 190 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
187 191 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
188 192 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
189 193 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
190 194 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
191 195 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
192 196 5.664457 TGGTGAGACATATTGTGCTAAGAG 58.336 41.667 0.00 0.00 0.00 2.85
193 197 5.675684 TGGTGAGACATATTGTGCTAAGA 57.324 39.130 0.00 0.00 0.00 2.10
194 198 5.819379 ACATGGTGAGACATATTGTGCTAAG 59.181 40.000 0.00 0.00 0.00 2.18
195 199 5.744171 ACATGGTGAGACATATTGTGCTAA 58.256 37.500 0.00 0.00 0.00 3.09
196 200 5.357742 ACATGGTGAGACATATTGTGCTA 57.642 39.130 0.00 0.00 0.00 3.49
197 201 4.226427 ACATGGTGAGACATATTGTGCT 57.774 40.909 0.00 0.00 0.00 4.40
198 202 4.970662 AACATGGTGAGACATATTGTGC 57.029 40.909 0.00 0.00 0.00 4.57
199 203 7.970061 CCTAAAAACATGGTGAGACATATTGTG 59.030 37.037 0.00 0.00 0.00 3.33
200 204 7.888021 TCCTAAAAACATGGTGAGACATATTGT 59.112 33.333 0.00 0.00 0.00 2.71
201 205 8.279970 TCCTAAAAACATGGTGAGACATATTG 57.720 34.615 0.00 0.00 0.00 1.90
202 206 8.877864 TTCCTAAAAACATGGTGAGACATATT 57.122 30.769 0.00 0.00 0.00 1.28
204 208 9.967451 TTATTCCTAAAAACATGGTGAGACATA 57.033 29.630 0.00 0.00 0.00 2.29
205 209 8.739972 GTTATTCCTAAAAACATGGTGAGACAT 58.260 33.333 0.00 0.00 0.00 3.06
206 210 7.942341 AGTTATTCCTAAAAACATGGTGAGACA 59.058 33.333 0.00 0.00 0.00 3.41
207 211 8.336801 AGTTATTCCTAAAAACATGGTGAGAC 57.663 34.615 0.00 0.00 0.00 3.36
235 239 9.988815 GTCATCTCTTAGCCTTATCTTCAATAA 57.011 33.333 0.00 0.00 0.00 1.40
236 240 8.589338 GGTCATCTCTTAGCCTTATCTTCAATA 58.411 37.037 0.00 0.00 0.00 1.90
237 241 7.449247 GGTCATCTCTTAGCCTTATCTTCAAT 58.551 38.462 0.00 0.00 0.00 2.57
238 242 6.183361 GGGTCATCTCTTAGCCTTATCTTCAA 60.183 42.308 0.00 0.00 0.00 2.69
239 243 5.305644 GGGTCATCTCTTAGCCTTATCTTCA 59.694 44.000 0.00 0.00 0.00 3.02
240 244 5.305644 TGGGTCATCTCTTAGCCTTATCTTC 59.694 44.000 0.00 0.00 34.30 2.87
241 245 5.219739 TGGGTCATCTCTTAGCCTTATCTT 58.780 41.667 0.00 0.00 34.30 2.40
242 246 4.820775 TGGGTCATCTCTTAGCCTTATCT 58.179 43.478 0.00 0.00 34.30 1.98
243 247 5.753721 ATGGGTCATCTCTTAGCCTTATC 57.246 43.478 0.00 0.00 34.30 1.75
244 248 5.370880 ACAATGGGTCATCTCTTAGCCTTAT 59.629 40.000 0.00 0.00 34.30 1.73
245 249 4.721776 ACAATGGGTCATCTCTTAGCCTTA 59.278 41.667 0.00 0.00 34.30 2.69
246 250 3.525199 ACAATGGGTCATCTCTTAGCCTT 59.475 43.478 0.00 0.00 34.30 4.35
247 251 3.118531 ACAATGGGTCATCTCTTAGCCT 58.881 45.455 0.00 0.00 34.30 4.58
248 252 3.567478 ACAATGGGTCATCTCTTAGCC 57.433 47.619 0.00 0.00 0.00 3.93
249 253 5.163405 TGTCTACAATGGGTCATCTCTTAGC 60.163 44.000 0.00 0.00 0.00 3.09
250 254 6.471233 TGTCTACAATGGGTCATCTCTTAG 57.529 41.667 0.00 0.00 0.00 2.18
251 255 6.867519 TTGTCTACAATGGGTCATCTCTTA 57.132 37.500 0.00 0.00 0.00 2.10
252 256 5.762179 TTGTCTACAATGGGTCATCTCTT 57.238 39.130 0.00 0.00 0.00 2.85
253 257 5.762179 TTTGTCTACAATGGGTCATCTCT 57.238 39.130 0.00 0.00 35.55 3.10
254 258 7.396540 AAATTTGTCTACAATGGGTCATCTC 57.603 36.000 0.00 0.00 35.55 2.75
255 259 7.781324 AAAATTTGTCTACAATGGGTCATCT 57.219 32.000 0.00 0.00 35.55 2.90
316 320 9.770097 CATGTACAATGGTTGATAAGATAGTCT 57.230 33.333 0.00 0.00 0.00 3.24
317 321 8.499162 GCATGTACAATGGTTGATAAGATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
318 322 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
319 323 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
320 324 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
321 325 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
322 326 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
323 327 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
324 328 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
325 329 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
326 330 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
327 331 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
328 332 3.181487 GCTTAGGGCATGTACAATGGTTG 60.181 47.826 0.00 0.00 41.35 3.77
329 333 3.023832 GCTTAGGGCATGTACAATGGTT 58.976 45.455 0.00 0.00 41.35 3.67
330 334 2.242196 AGCTTAGGGCATGTACAATGGT 59.758 45.455 0.00 0.00 44.79 3.55
331 335 2.936202 AGCTTAGGGCATGTACAATGG 58.064 47.619 0.00 0.00 44.79 3.16
332 336 3.489738 GCAAGCTTAGGGCATGTACAATG 60.490 47.826 0.00 0.12 44.79 2.82
333 337 2.689983 GCAAGCTTAGGGCATGTACAAT 59.310 45.455 0.00 0.00 44.79 2.71
334 338 2.091541 GCAAGCTTAGGGCATGTACAA 58.908 47.619 0.00 0.00 44.79 2.41
335 339 1.281867 AGCAAGCTTAGGGCATGTACA 59.718 47.619 9.64 0.00 44.79 2.90
336 340 1.943340 GAGCAAGCTTAGGGCATGTAC 59.057 52.381 9.64 0.00 44.79 2.90
337 341 1.559219 TGAGCAAGCTTAGGGCATGTA 59.441 47.619 9.64 0.00 44.79 2.29
338 342 0.329261 TGAGCAAGCTTAGGGCATGT 59.671 50.000 9.64 0.00 44.79 3.21
339 343 0.737219 GTGAGCAAGCTTAGGGCATG 59.263 55.000 9.64 0.00 44.79 4.06
340 344 0.394899 GGTGAGCAAGCTTAGGGCAT 60.395 55.000 9.64 0.00 44.79 4.40
341 345 1.002134 GGTGAGCAAGCTTAGGGCA 60.002 57.895 9.64 0.00 44.79 5.36
342 346 0.609131 TTGGTGAGCAAGCTTAGGGC 60.609 55.000 0.00 0.00 42.19 5.19
343 347 1.747355 CATTGGTGAGCAAGCTTAGGG 59.253 52.381 0.00 0.00 0.00 3.53
344 348 2.715046 TCATTGGTGAGCAAGCTTAGG 58.285 47.619 0.00 0.00 0.00 2.69
345 349 4.978083 ATTCATTGGTGAGCAAGCTTAG 57.022 40.909 0.00 0.00 35.39 2.18
393 397 4.574013 CAGGGCAAGATCATACTTTCACTC 59.426 45.833 0.00 0.00 25.50 3.51
442 489 0.166814 GAAGCATGCGACCTTGTGAC 59.833 55.000 13.01 0.00 0.00 3.67
458 505 1.386533 GACATGCATGGTGGGAGAAG 58.613 55.000 29.41 1.63 0.00 2.85
462 509 2.237229 TGGGACATGCATGGTGGGA 61.237 57.895 29.41 7.54 0.00 4.37
463 510 2.359797 TGGGACATGCATGGTGGG 59.640 61.111 29.41 5.50 0.00 4.61
609 660 2.048222 CGTGCTGCGGGAAGAAGA 60.048 61.111 0.00 0.00 36.85 2.87
619 670 2.280797 TGGACAGGAACGTGCTGC 60.281 61.111 0.00 0.00 39.63 5.25
678 739 4.112634 GTGTTCTTGAAGCAAAAAGGACC 58.887 43.478 2.37 0.00 31.84 4.46
695 756 0.313672 TGGAAAATGCCGCAGTGTTC 59.686 50.000 0.00 2.30 0.00 3.18
759 821 1.878069 CGTGGATCGATCGCTTGCA 60.878 57.895 18.81 9.08 42.86 4.08
768 830 2.125952 CAGCACAGCGTGGATCGA 60.126 61.111 10.02 0.00 42.86 3.59
813 891 4.716977 GGGGTGGAGAGTCCGGGT 62.717 72.222 0.00 0.00 40.17 5.28
889 980 1.691434 GACATGGAGGAGGAGGCTAAG 59.309 57.143 0.00 0.00 0.00 2.18
890 981 1.692762 GGACATGGAGGAGGAGGCTAA 60.693 57.143 0.00 0.00 0.00 3.09
942 1033 2.679342 CGGTGGGGGTGATGATGGT 61.679 63.158 0.00 0.00 0.00 3.55
943 1034 2.192979 CGGTGGGGGTGATGATGG 59.807 66.667 0.00 0.00 0.00 3.51
944 1035 2.516930 GCGGTGGGGGTGATGATG 60.517 66.667 0.00 0.00 0.00 3.07
1206 1306 4.410555 TGGGTACATAACATGGCAGATACA 59.589 41.667 0.00 0.00 33.60 2.29
1207 1307 4.755123 GTGGGTACATAACATGGCAGATAC 59.245 45.833 0.00 0.00 33.60 2.24
1208 1308 4.410555 TGTGGGTACATAACATGGCAGATA 59.589 41.667 0.00 0.00 33.60 1.98
1209 1309 3.201930 TGTGGGTACATAACATGGCAGAT 59.798 43.478 0.00 0.00 33.60 2.90
1210 1310 2.573915 TGTGGGTACATAACATGGCAGA 59.426 45.455 0.00 0.00 33.60 4.26
1211 1311 2.997980 TGTGGGTACATAACATGGCAG 58.002 47.619 0.00 0.00 33.60 4.85
1212 1312 3.660970 ATGTGGGTACATAACATGGCA 57.339 42.857 0.00 0.00 45.45 4.92
1213 1313 3.068024 CCAATGTGGGTACATAACATGGC 59.932 47.826 0.00 0.00 46.54 4.40
1214 1314 3.068024 GCCAATGTGGGTACATAACATGG 59.932 47.826 0.00 10.95 46.54 3.66
1215 1315 4.305989 GCCAATGTGGGTACATAACATG 57.694 45.455 7.75 0.00 46.54 3.21
1236 1336 1.393539 CATGAACTGGCCGTTTACGAG 59.606 52.381 13.03 0.00 43.02 4.18
1239 1339 0.170339 GGCATGAACTGGCCGTTTAC 59.830 55.000 13.03 4.03 44.46 2.01
1240 1340 2.562125 GGCATGAACTGGCCGTTTA 58.438 52.632 13.03 10.08 44.46 2.01
1247 1347 0.888736 TGAACCGTGGCATGAACTGG 60.889 55.000 8.63 2.94 0.00 4.00
1253 1353 0.880441 TTGTGATGAACCGTGGCATG 59.120 50.000 0.00 0.00 0.00 4.06
1284 1387 1.132453 TGCGACAGTAGATTCCGTCAG 59.868 52.381 0.00 0.00 0.00 3.51
1307 1410 3.646715 CCTTCCACCCTCGGGCAA 61.647 66.667 0.82 0.00 39.32 4.52
1367 1470 2.038863 TCTTGGGGCTCTTAACCTGA 57.961 50.000 0.00 0.00 0.00 3.86
1373 1476 3.104837 AGGCTTCTTGGGGCTCTTA 57.895 52.632 0.00 0.00 34.44 2.10
1431 1534 3.189287 GGACTCCAGTAAACATTGCACAG 59.811 47.826 0.00 0.00 0.00 3.66
1444 1547 5.395214 GGTTTGTTCAAAAATGGACTCCAGT 60.395 40.000 3.62 0.00 36.75 4.00
1445 1548 5.049828 GGTTTGTTCAAAAATGGACTCCAG 58.950 41.667 3.62 0.00 36.75 3.86
1446 1549 4.467795 TGGTTTGTTCAAAAATGGACTCCA 59.532 37.500 0.00 0.00 38.19 3.86
1447 1550 5.017294 TGGTTTGTTCAAAAATGGACTCC 57.983 39.130 0.00 0.00 0.00 3.85
1448 1551 5.293324 GGTTGGTTTGTTCAAAAATGGACTC 59.707 40.000 0.00 0.00 0.00 3.36
1449 1552 5.182487 GGTTGGTTTGTTCAAAAATGGACT 58.818 37.500 0.00 0.00 0.00 3.85
1450 1553 4.033472 CGGTTGGTTTGTTCAAAAATGGAC 59.967 41.667 0.00 0.00 0.00 4.02
1451 1554 4.081642 TCGGTTGGTTTGTTCAAAAATGGA 60.082 37.500 0.00 0.00 0.00 3.41
1463 1566 1.362355 GGTTGGCTCGGTTGGTTTG 59.638 57.895 0.00 0.00 0.00 2.93
1466 1569 2.897172 AAACGGTTGGCTCGGTTGGT 62.897 55.000 0.00 0.00 36.10 3.67
1477 1581 2.843643 CGTCAGTTCACAAAAACGGTTG 59.156 45.455 0.00 0.00 34.27 3.77
1482 1586 2.098870 GTCGCGTCAGTTCACAAAAAC 58.901 47.619 5.77 0.00 0.00 2.43
1484 1588 0.299300 CGTCGCGTCAGTTCACAAAA 59.701 50.000 5.77 0.00 0.00 2.44
1693 1799 2.034687 TCAAGCTCCTTGCCAGCC 59.965 61.111 0.22 0.00 44.23 4.85
1928 2039 1.867373 ATTTTCATTTCGGCGCGCG 60.867 52.632 28.44 28.44 0.00 6.86
1945 2056 1.002868 GCCTGCGCCATAGATCCAT 60.003 57.895 4.18 0.00 0.00 3.41
1946 2057 2.142761 AGCCTGCGCCATAGATCCA 61.143 57.895 4.18 0.00 34.57 3.41
1948 2059 1.670406 CCAGCCTGCGCCATAGATC 60.670 63.158 4.18 0.00 34.57 2.75
2670 2889 2.983592 GTGTTGTTCCCGGGCCAG 60.984 66.667 18.49 0.00 0.00 4.85
3056 3369 2.774351 GGGAGGGAGGATGGGGTG 60.774 72.222 0.00 0.00 0.00 4.61
3058 3371 2.122189 GAGGGAGGGAGGATGGGG 60.122 72.222 0.00 0.00 0.00 4.96
3059 3372 2.122189 GGAGGGAGGGAGGATGGG 60.122 72.222 0.00 0.00 0.00 4.00
3060 3373 2.122189 GGGAGGGAGGGAGGATGG 60.122 72.222 0.00 0.00 0.00 3.51
3061 3374 1.152139 GAGGGAGGGAGGGAGGATG 60.152 68.421 0.00 0.00 0.00 3.51
3062 3375 2.416923 GGAGGGAGGGAGGGAGGAT 61.417 68.421 0.00 0.00 0.00 3.24
3063 3376 3.036959 GGAGGGAGGGAGGGAGGA 61.037 72.222 0.00 0.00 0.00 3.71
3064 3377 2.687909 GATGGAGGGAGGGAGGGAGG 62.688 70.000 0.00 0.00 0.00 4.30
3065 3378 1.152139 GATGGAGGGAGGGAGGGAG 60.152 68.421 0.00 0.00 0.00 4.30
3066 3379 1.630333 AGATGGAGGGAGGGAGGGA 60.630 63.158 0.00 0.00 0.00 4.20
3067 3380 1.461075 CAGATGGAGGGAGGGAGGG 60.461 68.421 0.00 0.00 0.00 4.30
3068 3381 0.762461 GTCAGATGGAGGGAGGGAGG 60.762 65.000 0.00 0.00 0.00 4.30
3069 3382 0.031716 TGTCAGATGGAGGGAGGGAG 60.032 60.000 0.00 0.00 0.00 4.30
3070 3383 0.325671 GTGTCAGATGGAGGGAGGGA 60.326 60.000 0.00 0.00 0.00 4.20
3090 3403 1.952133 CGCCGGAGTGAAACACGAA 60.952 57.895 5.05 0.00 41.04 3.85
3092 3405 2.241880 AACGCCGGAGTGAAACACG 61.242 57.895 13.00 0.42 41.43 4.49
3093 3406 1.278637 CAACGCCGGAGTGAAACAC 59.721 57.895 13.00 0.00 41.43 3.32
3115 3436 3.275999 CACCACATCATCAATCAGCTCA 58.724 45.455 0.00 0.00 0.00 4.26
3145 3466 3.242969 CCCTTCATGTTGATCTGCAATCG 60.243 47.826 0.00 0.00 39.03 3.34
3291 3615 3.720193 CAGCAGCAGCACCACGAC 61.720 66.667 3.17 0.00 45.49 4.34
3342 3666 1.545651 CCGCCCTTCTTCTCCTTGTTT 60.546 52.381 0.00 0.00 0.00 2.83
3740 4069 6.903419 AGAAATTTTACAGTGAGCAACTAGC 58.097 36.000 0.00 0.00 46.19 3.42
3743 4072 9.120538 TCTTAAGAAATTTTACAGTGAGCAACT 57.879 29.630 1.68 0.00 40.93 3.16
3744 4073 9.899226 ATCTTAAGAAATTTTACAGTGAGCAAC 57.101 29.630 9.71 0.00 0.00 4.17
3851 4181 1.001641 GCTCATCCAGGCACCAGTT 60.002 57.895 0.00 0.00 0.00 3.16
3860 4190 1.948145 GAATGGCAAGAGCTCATCCAG 59.052 52.381 17.77 1.51 41.70 3.86
3871 4201 1.061131 GACACGATCACGAATGGCAAG 59.939 52.381 0.00 0.00 42.66 4.01
3872 4202 1.075542 GACACGATCACGAATGGCAA 58.924 50.000 0.00 0.00 42.66 4.52
3884 4214 8.498054 AAACTTATCAATGAGAATGACACGAT 57.502 30.769 0.00 0.00 0.00 3.73
3885 4215 7.905604 AAACTTATCAATGAGAATGACACGA 57.094 32.000 0.00 0.00 0.00 4.35
3886 4216 7.007725 GCAAAACTTATCAATGAGAATGACACG 59.992 37.037 0.00 0.00 0.00 4.49
3887 4217 7.274250 GGCAAAACTTATCAATGAGAATGACAC 59.726 37.037 0.00 0.00 0.00 3.67
3888 4218 7.177216 AGGCAAAACTTATCAATGAGAATGACA 59.823 33.333 0.00 0.00 0.00 3.58
3889 4219 7.542025 AGGCAAAACTTATCAATGAGAATGAC 58.458 34.615 0.00 0.00 0.00 3.06
3890 4220 7.707624 AGGCAAAACTTATCAATGAGAATGA 57.292 32.000 0.00 0.00 0.00 2.57
3891 4221 9.294030 GTTAGGCAAAACTTATCAATGAGAATG 57.706 33.333 0.00 0.00 0.00 2.67
3892 4222 9.023962 TGTTAGGCAAAACTTATCAATGAGAAT 57.976 29.630 0.00 0.00 0.00 2.40
3896 4226 8.250332 GGATTGTTAGGCAAAACTTATCAATGA 58.750 33.333 14.16 0.00 40.91 2.57
3904 4234 9.791801 AATTAAATGGATTGTTAGGCAAAACTT 57.208 25.926 4.67 0.00 40.91 2.66
3912 4242 6.697019 CGCCAGAAATTAAATGGATTGTTAGG 59.303 38.462 7.50 0.00 36.09 2.69
3927 4257 5.477510 TGCATAATTTTCACGCCAGAAATT 58.522 33.333 0.00 0.00 37.35 1.82
4026 4363 2.342279 GTGGGCGTGCAGTAGACA 59.658 61.111 0.00 0.00 0.00 3.41
4062 4399 2.114670 CAAGTTGATGGGCGCCGAT 61.115 57.895 25.12 25.12 0.00 4.18
4347 4687 0.597568 CCGATCACTTGCTTGCCAAA 59.402 50.000 0.00 0.00 31.94 3.28
4387 4727 0.740149 CAGGTTGTTGAGCTGCACAA 59.260 50.000 8.44 8.44 45.85 3.33
4667 5102 2.616458 GGGTGGGATCAGCAGGGTT 61.616 63.158 0.00 0.00 42.72 4.11
4949 5384 0.035439 CACACGGCTTAAGGATGGGT 60.035 55.000 4.29 0.00 0.00 4.51
4986 5421 2.224314 GCGAGCCATTGATAACTAAGGC 59.776 50.000 0.00 0.00 42.31 4.35
4995 5430 1.133598 CAATGTGTGCGAGCCATTGAT 59.866 47.619 15.54 0.00 45.17 2.57
5017 5452 1.111277 ATATGAACCGCCCCAAAAGC 58.889 50.000 0.00 0.00 0.00 3.51
5130 5565 4.557496 GCAGAAACAGTGTCCTTCCATTTC 60.557 45.833 0.00 0.00 0.00 2.17
5131 5566 3.319122 GCAGAAACAGTGTCCTTCCATTT 59.681 43.478 0.00 0.00 0.00 2.32
5167 5602 9.100554 CTTTTGGCATCAAATAAATTATGCTCA 57.899 29.630 8.17 3.30 43.33 4.26
5168 5603 9.101655 ACTTTTGGCATCAAATAAATTATGCTC 57.898 29.630 8.17 1.21 43.33 4.26
5169 5604 9.452287 AACTTTTGGCATCAAATAAATTATGCT 57.548 25.926 8.17 0.00 43.33 3.79
5170 5605 9.493206 CAACTTTTGGCATCAAATAAATTATGC 57.507 29.630 0.00 0.00 41.84 3.14
5171 5606 9.991388 CCAACTTTTGGCATCAAATAAATTATG 57.009 29.630 0.00 0.00 45.17 1.90
5195 5630 4.720046 TCTACAACATTTGGCAGTTACCA 58.280 39.130 0.00 0.00 38.16 3.25
5196 5631 5.001232 TCTCTACAACATTTGGCAGTTACC 58.999 41.667 0.00 0.00 34.12 2.85
5197 5632 6.743575 ATCTCTACAACATTTGGCAGTTAC 57.256 37.500 0.00 0.00 34.12 2.50
5198 5633 6.150976 CCAATCTCTACAACATTTGGCAGTTA 59.849 38.462 0.00 0.00 34.12 2.24
5199 5634 5.047802 CCAATCTCTACAACATTTGGCAGTT 60.048 40.000 0.00 0.00 34.12 3.16
5200 5635 4.460382 CCAATCTCTACAACATTTGGCAGT 59.540 41.667 0.00 0.00 34.12 4.40
5201 5636 4.460382 ACCAATCTCTACAACATTTGGCAG 59.540 41.667 0.00 0.00 37.68 4.85
5202 5637 4.406456 ACCAATCTCTACAACATTTGGCA 58.594 39.130 0.00 0.00 37.68 4.92
5203 5638 5.391312 AACCAATCTCTACAACATTTGGC 57.609 39.130 0.00 0.00 37.68 4.52
5204 5639 5.711976 AGGAACCAATCTCTACAACATTTGG 59.288 40.000 0.00 0.00 39.55 3.28
5205 5640 6.824305 AGGAACCAATCTCTACAACATTTG 57.176 37.500 0.00 0.00 0.00 2.32
5206 5641 6.294731 GCAAGGAACCAATCTCTACAACATTT 60.295 38.462 0.00 0.00 0.00 2.32
5207 5642 5.183904 GCAAGGAACCAATCTCTACAACATT 59.816 40.000 0.00 0.00 0.00 2.71
5208 5643 4.702131 GCAAGGAACCAATCTCTACAACAT 59.298 41.667 0.00 0.00 0.00 2.71
5209 5644 4.072131 GCAAGGAACCAATCTCTACAACA 58.928 43.478 0.00 0.00 0.00 3.33
5210 5645 3.440522 GGCAAGGAACCAATCTCTACAAC 59.559 47.826 0.00 0.00 0.00 3.32
5211 5646 3.073798 TGGCAAGGAACCAATCTCTACAA 59.926 43.478 0.00 0.00 33.12 2.41
5212 5647 2.642311 TGGCAAGGAACCAATCTCTACA 59.358 45.455 0.00 0.00 33.12 2.74
5213 5648 3.350219 TGGCAAGGAACCAATCTCTAC 57.650 47.619 0.00 0.00 33.12 2.59
5215 5650 2.978156 TTGGCAAGGAACCAATCTCT 57.022 45.000 0.00 0.00 42.23 3.10
5221 5656 2.035632 ACGAAAATTGGCAAGGAACCA 58.964 42.857 5.96 0.00 34.65 3.67
5222 5657 2.799978 CAACGAAAATTGGCAAGGAACC 59.200 45.455 5.96 0.00 0.00 3.62
5223 5658 2.220824 GCAACGAAAATTGGCAAGGAAC 59.779 45.455 5.96 0.00 0.00 3.62
5224 5659 2.478831 GCAACGAAAATTGGCAAGGAA 58.521 42.857 5.96 0.00 0.00 3.36
5225 5660 2.147436 GCAACGAAAATTGGCAAGGA 57.853 45.000 5.96 0.00 0.00 3.36
5231 5666 3.911868 TGAGATTGGCAACGAAAATTGG 58.088 40.909 0.00 0.00 42.51 3.16
5232 5667 7.579589 TTTATGAGATTGGCAACGAAAATTG 57.420 32.000 0.00 0.00 42.51 2.32
5233 5668 8.087750 TCTTTTATGAGATTGGCAACGAAAATT 58.912 29.630 0.00 0.00 42.51 1.82
5234 5669 7.601856 TCTTTTATGAGATTGGCAACGAAAAT 58.398 30.769 0.00 0.00 42.51 1.82
5235 5670 6.976088 TCTTTTATGAGATTGGCAACGAAAA 58.024 32.000 0.00 2.82 42.51 2.29
5236 5671 6.567687 TCTTTTATGAGATTGGCAACGAAA 57.432 33.333 0.00 0.00 42.51 3.46
5237 5672 6.456853 CGATCTTTTATGAGATTGGCAACGAA 60.457 38.462 0.00 0.00 36.54 3.85
5238 5673 5.006649 CGATCTTTTATGAGATTGGCAACGA 59.993 40.000 0.00 0.00 36.54 3.85
5239 5674 5.200454 CGATCTTTTATGAGATTGGCAACG 58.800 41.667 0.00 0.00 36.54 4.10
5240 5675 5.514279 CCGATCTTTTATGAGATTGGCAAC 58.486 41.667 0.00 0.00 45.92 4.17
5241 5676 5.756195 CCGATCTTTTATGAGATTGGCAA 57.244 39.130 0.68 0.68 45.92 4.52
5248 5683 8.600625 CGTTAACATTTCCGATCTTTTATGAGA 58.399 33.333 6.39 0.00 0.00 3.27
5249 5684 7.373441 GCGTTAACATTTCCGATCTTTTATGAG 59.627 37.037 6.39 0.00 0.00 2.90
5250 5685 7.184106 GCGTTAACATTTCCGATCTTTTATGA 58.816 34.615 6.39 0.00 0.00 2.15
5251 5686 6.413818 GGCGTTAACATTTCCGATCTTTTATG 59.586 38.462 6.39 0.00 0.00 1.90
5252 5687 6.459161 GGGCGTTAACATTTCCGATCTTTTAT 60.459 38.462 6.39 0.00 0.00 1.40
5253 5688 5.163733 GGGCGTTAACATTTCCGATCTTTTA 60.164 40.000 6.39 0.00 0.00 1.52
5254 5689 4.380128 GGGCGTTAACATTTCCGATCTTTT 60.380 41.667 6.39 0.00 0.00 2.27
5255 5690 3.128068 GGGCGTTAACATTTCCGATCTTT 59.872 43.478 6.39 0.00 0.00 2.52
5256 5691 2.681344 GGGCGTTAACATTTCCGATCTT 59.319 45.455 6.39 0.00 0.00 2.40
5257 5692 2.285977 GGGCGTTAACATTTCCGATCT 58.714 47.619 6.39 0.00 0.00 2.75
5258 5693 2.011222 TGGGCGTTAACATTTCCGATC 58.989 47.619 6.39 0.00 0.00 3.69
5259 5694 1.741145 GTGGGCGTTAACATTTCCGAT 59.259 47.619 6.39 0.00 0.00 4.18
5371 5807 0.033504 CGCGCCTTATCCTACATGGT 59.966 55.000 0.00 0.00 37.07 3.55
5375 5811 0.179121 CACACGCGCCTTATCCTACA 60.179 55.000 5.73 0.00 0.00 2.74
5382 5818 2.663520 CACCACACACGCGCCTTA 60.664 61.111 5.73 0.00 0.00 2.69
5441 5879 4.077184 CCCGAGTGGCAACCGCTA 62.077 66.667 0.00 0.00 45.19 4.26
5590 6031 0.389817 CAATCGACTGAACTGCGGGA 60.390 55.000 0.00 0.00 0.00 5.14
5621 6062 1.884444 GCCGTCGTCTTCTCCTCTT 59.116 57.895 0.00 0.00 0.00 2.85
5734 6175 0.035439 GGATTTTGAGCGTGGGAGGA 60.035 55.000 0.00 0.00 0.00 3.71
5766 6208 4.499116 CCACGGAGGGGAGGGGAT 62.499 72.222 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.