Multiple sequence alignment - TraesCS1B01G167100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G167100 chr1B 100.000 5142 0 0 1 5142 296492935 296498076 0.000000e+00 9496.0
1 TraesCS1B01G167100 chr1B 92.935 184 10 2 694 875 296806612 296806430 1.100000e-66 265.0
2 TraesCS1B01G167100 chr1D 91.999 4037 176 65 876 4849 202561622 202565574 0.000000e+00 5529.0
3 TraesCS1B01G167100 chr1D 90.764 314 28 1 176 489 488505749 488506061 7.960000e-113 418.0
4 TraesCS1B01G167100 chr1D 95.288 191 9 0 490 680 202561419 202561609 2.330000e-78 303.0
5 TraesCS1B01G167100 chr1D 86.667 240 25 5 2 235 488505648 488505886 5.110000e-65 259.0
6 TraesCS1B01G167100 chr1D 90.805 87 8 0 3634 3720 122770085 122770171 3.250000e-22 117.0
7 TraesCS1B01G167100 chr1A 91.671 3686 192 48 875 4504 256819234 256822860 0.000000e+00 5000.0
8 TraesCS1B01G167100 chr1A 89.096 376 41 0 110 485 256959875 256960250 7.800000e-128 468.0
9 TraesCS1B01G167100 chr1A 94.224 277 16 0 4845 5121 583816272 583816548 1.710000e-114 424.0
10 TraesCS1B01G167100 chr1A 92.657 286 21 0 4839 5124 53021982 53022267 3.700000e-111 412.0
11 TraesCS1B01G167100 chr1A 92.500 120 8 1 576 694 256819125 256819244 2.460000e-38 171.0
12 TraesCS1B01G167100 chr5B 91.170 487 41 2 1 486 545087186 545087671 0.000000e+00 660.0
13 TraesCS1B01G167100 chr5B 84.990 513 48 16 7 500 216659745 216660247 1.290000e-135 494.0
14 TraesCS1B01G167100 chr5B 93.907 279 15 1 4846 5124 320411186 320410910 2.210000e-113 420.0
15 TraesCS1B01G167100 chr3A 87.785 483 52 6 2 480 733434005 733433526 4.500000e-155 558.0
16 TraesCS1B01G167100 chr6D 87.143 490 60 3 2 489 37736166 37736654 2.090000e-153 553.0
17 TraesCS1B01G167100 chr6D 90.526 190 8 6 694 875 420569441 420569628 5.140000e-60 243.0
18 TraesCS1B01G167100 chr6D 88.889 90 10 0 3629 3718 316155054 316155143 1.510000e-20 111.0
19 TraesCS1B01G167100 chr2A 89.095 431 46 1 45 475 92478586 92478157 7.580000e-148 534.0
20 TraesCS1B01G167100 chr2A 93.907 279 17 0 4846 5124 39930257 39930535 6.160000e-114 422.0
21 TraesCS1B01G167100 chr2A 88.889 81 9 0 3639 3719 660287364 660287444 3.280000e-17 100.0
22 TraesCS1B01G167100 chr4B 84.959 492 54 12 1 480 449393482 449392999 1.000000e-131 481.0
23 TraesCS1B01G167100 chr4B 87.778 90 11 0 3632 3721 657004741 657004652 7.040000e-19 106.0
24 TraesCS1B01G167100 chr4A 93.684 285 18 0 4839 5123 713987218 713987502 1.320000e-115 427.0
25 TraesCS1B01G167100 chr4A 88.358 335 36 3 159 492 562459954 562459622 2.880000e-107 399.0
26 TraesCS1B01G167100 chr4A 87.209 86 11 0 3634 3719 719098208 719098293 1.180000e-16 99.0
27 TraesCS1B01G167100 chr6A 93.885 278 17 0 4844 5121 50269832 50270109 2.210000e-113 420.0
28 TraesCS1B01G167100 chrUn 94.161 274 16 0 4848 5121 40187390 40187663 7.960000e-113 418.0
29 TraesCS1B01G167100 chr3B 93.863 277 17 0 4848 5124 813141296 813141020 7.960000e-113 418.0
30 TraesCS1B01G167100 chr3B 85.143 175 23 3 62 235 788104944 788105116 5.290000e-40 176.0
31 TraesCS1B01G167100 chr6B 92.958 284 20 0 4848 5131 518679777 518680060 1.030000e-111 414.0
32 TraesCS1B01G167100 chr4D 89.157 83 9 0 3637 3719 165260867 165260785 2.530000e-18 104.0
33 TraesCS1B01G167100 chr5A 87.805 82 10 0 3637 3718 678203654 678203573 4.240000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G167100 chr1B 296492935 296498076 5141 False 9496.0 9496 100.0000 1 5142 1 chr1B.!!$F1 5141
1 TraesCS1B01G167100 chr1D 202561419 202565574 4155 False 2916.0 5529 93.6435 490 4849 2 chr1D.!!$F2 4359
2 TraesCS1B01G167100 chr1A 256819125 256822860 3735 False 2585.5 5000 92.0855 576 4504 2 chr1A.!!$F4 3928
3 TraesCS1B01G167100 chr5B 216659745 216660247 502 False 494.0 494 84.9900 7 500 1 chr5B.!!$F1 493

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
726 746 0.031721 GCACGGACTAATACGGGGAG 59.968 60.000 0.0 0.0 35.39 4.30 F
865 885 0.037139 AAGTTATGCCCGTGCGTGTA 60.037 50.000 0.0 0.0 41.78 2.90 F
866 886 0.459585 AGTTATGCCCGTGCGTGTAG 60.460 55.000 0.0 0.0 41.78 2.74 F
1558 1609 1.403647 GGGGCGTTTTTAGCATTGGTC 60.404 52.381 0.0 0.0 36.08 4.02 F
2912 2976 1.742761 CAAATCAGCCTCACCGATGT 58.257 50.000 0.0 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2434 2498 1.206849 TGATCATACAAGCTGCCGACA 59.793 47.619 0.00 0.00 0.00 4.35 R
2435 2499 1.863454 CTGATCATACAAGCTGCCGAC 59.137 52.381 0.00 0.00 0.00 4.79 R
2734 2798 3.011818 CAATCAGAGCCATACACTGCAA 58.988 45.455 0.00 0.00 36.95 4.08 R
3276 3345 2.860062 CTGCAGCTAAACAGCATTGAC 58.140 47.619 0.00 0.00 40.37 3.18 R
4197 4303 0.173481 CTGAGGCGGTTCGAATCTCA 59.827 55.000 6.88 13.22 32.69 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 5.571784 TGCAGAATCCTTCTTTGCAATAG 57.428 39.130 0.00 0.92 36.24 1.73
42 43 7.067372 TCCTTCTTTGCAATAGACCATATGTTG 59.933 37.037 0.00 0.48 0.00 3.33
68 69 7.412781 GCAGAAACATTCACAGTAGAGATTCTG 60.413 40.741 0.00 0.00 41.63 3.02
74 75 8.031864 ACATTCACAGTAGAGATTCTGTTACAG 58.968 37.037 5.94 5.94 42.05 2.74
75 76 6.516739 TCACAGTAGAGATTCTGTTACAGG 57.483 41.667 12.79 0.00 42.05 4.00
76 77 5.419155 TCACAGTAGAGATTCTGTTACAGGG 59.581 44.000 12.79 0.00 42.05 4.45
140 158 1.295792 TGTGGAACGACTTCTGCAAC 58.704 50.000 0.00 0.00 42.39 4.17
144 162 1.873591 GGAACGACTTCTGCAACACAT 59.126 47.619 0.00 0.00 0.00 3.21
147 165 4.436050 GGAACGACTTCTGCAACACATATG 60.436 45.833 0.00 0.00 0.00 1.78
167 185 8.089597 ACATATGATGTTGCAGATTTGTTTTCA 58.910 29.630 10.38 0.00 41.63 2.69
205 223 0.753479 ATGGGTGTTGTTGCGGAACA 60.753 50.000 19.24 19.24 40.45 3.18
238 256 5.964758 ACACAAATGATGTTGCGGAATATT 58.035 33.333 0.00 0.00 41.46 1.28
276 296 5.527511 TTTTTGAAACATGTGTGCTGTTG 57.472 34.783 0.00 0.00 36.95 3.33
277 297 3.865011 TTGAAACATGTGTGCTGTTGT 57.135 38.095 0.00 0.00 36.95 3.32
284 304 2.121291 TGTGTGCTGTTGTGAAAGGA 57.879 45.000 0.00 0.00 0.00 3.36
287 307 2.032178 GTGTGCTGTTGTGAAAGGACTC 59.968 50.000 0.00 0.00 35.91 3.36
298 318 1.876156 GAAAGGACTCCTGCAACACAG 59.124 52.381 0.00 0.00 46.77 3.66
316 336 4.351192 CACAGGTAGTGTTGCAGAAAAAC 58.649 43.478 0.00 0.00 43.40 2.43
330 350 4.610945 CAGAAAAACTGTTAAGGTGGCAG 58.389 43.478 0.00 0.00 41.30 4.85
356 376 4.702081 GTCACGCGCGGACTGAGT 62.702 66.667 35.22 8.09 32.54 3.41
357 377 4.400109 TCACGCGCGGACTGAGTC 62.400 66.667 35.22 3.47 0.00 3.36
394 414 6.742718 CGAATAAGGTGTTTTGCACTAAGATG 59.257 38.462 0.00 0.00 46.86 2.90
396 416 4.836125 AGGTGTTTTGCACTAAGATGTG 57.164 40.909 0.00 0.00 46.86 3.21
413 433 4.101790 GCATTGTGCACCGTCCGG 62.102 66.667 15.69 3.76 44.26 5.14
424 444 2.424302 CGTCCGGTGGAACTTGGT 59.576 61.111 0.00 0.00 36.74 3.67
425 445 1.227734 CGTCCGGTGGAACTTGGTT 60.228 57.895 0.00 0.00 36.74 3.67
433 453 2.626780 GGAACTTGGTTCTGGCGGC 61.627 63.158 0.00 0.00 41.70 6.53
438 458 3.866379 TTGGTTCTGGCGGCTGCAT 62.866 57.895 21.31 0.00 45.35 3.96
480 500 2.996168 ATCGGCCGGCTGATGCTAAC 62.996 60.000 42.77 16.24 40.25 2.34
486 506 1.334869 CCGGCTGATGCTAACCATTTC 59.665 52.381 0.00 0.00 39.59 2.17
492 512 4.081476 GCTGATGCTAACCATTTCCCTTTT 60.081 41.667 0.00 0.00 33.29 2.27
493 513 5.654497 CTGATGCTAACCATTTCCCTTTTC 58.346 41.667 0.00 0.00 33.29 2.29
601 621 2.046285 CGGTGGATGAAGGGCCAAC 61.046 63.158 6.18 0.00 38.52 3.77
602 622 2.046285 GGTGGATGAAGGGCCAACG 61.046 63.158 6.18 0.00 35.63 4.10
683 703 2.665089 CCCACACGGCTCATACCCA 61.665 63.158 0.00 0.00 0.00 4.51
685 705 1.449601 CACACGGCTCATACCCACC 60.450 63.158 0.00 0.00 0.00 4.61
687 707 1.144057 CACGGCTCATACCCACCTC 59.856 63.158 0.00 0.00 0.00 3.85
688 708 1.001760 ACGGCTCATACCCACCTCT 59.998 57.895 0.00 0.00 0.00 3.69
689 709 1.330655 ACGGCTCATACCCACCTCTG 61.331 60.000 0.00 0.00 0.00 3.35
691 711 1.147153 GCTCATACCCACCTCTGCC 59.853 63.158 0.00 0.00 0.00 4.85
692 712 1.832912 CTCATACCCACCTCTGCCC 59.167 63.158 0.00 0.00 0.00 5.36
693 713 1.692749 TCATACCCACCTCTGCCCC 60.693 63.158 0.00 0.00 0.00 5.80
694 714 2.768344 ATACCCACCTCTGCCCCG 60.768 66.667 0.00 0.00 0.00 5.73
695 715 3.326385 ATACCCACCTCTGCCCCGA 62.326 63.158 0.00 0.00 0.00 5.14
696 716 2.833151 ATACCCACCTCTGCCCCGAA 62.833 60.000 0.00 0.00 0.00 4.30
697 717 3.646715 CCCACCTCTGCCCCGAAA 61.647 66.667 0.00 0.00 0.00 3.46
698 718 2.434331 CCACCTCTGCCCCGAAAA 59.566 61.111 0.00 0.00 0.00 2.29
699 719 1.000896 CCACCTCTGCCCCGAAAAT 60.001 57.895 0.00 0.00 0.00 1.82
700 720 0.611896 CCACCTCTGCCCCGAAAATT 60.612 55.000 0.00 0.00 0.00 1.82
701 721 0.811281 CACCTCTGCCCCGAAAATTC 59.189 55.000 0.00 0.00 0.00 2.17
702 722 0.698818 ACCTCTGCCCCGAAAATTCT 59.301 50.000 0.00 0.00 0.00 2.40
703 723 1.913419 ACCTCTGCCCCGAAAATTCTA 59.087 47.619 0.00 0.00 0.00 2.10
704 724 2.307686 ACCTCTGCCCCGAAAATTCTAA 59.692 45.455 0.00 0.00 0.00 2.10
705 725 3.245122 ACCTCTGCCCCGAAAATTCTAAA 60.245 43.478 0.00 0.00 0.00 1.85
706 726 3.128764 CCTCTGCCCCGAAAATTCTAAAC 59.871 47.826 0.00 0.00 0.00 2.01
707 727 2.745281 TCTGCCCCGAAAATTCTAAACG 59.255 45.455 0.00 0.00 0.00 3.60
708 728 1.200484 TGCCCCGAAAATTCTAAACGC 59.800 47.619 0.00 0.00 0.00 4.84
709 729 1.200484 GCCCCGAAAATTCTAAACGCA 59.800 47.619 0.00 0.00 0.00 5.24
710 730 2.858839 CCCCGAAAATTCTAAACGCAC 58.141 47.619 0.00 0.00 0.00 5.34
711 731 2.501881 CCCGAAAATTCTAAACGCACG 58.498 47.619 0.00 0.00 0.00 5.34
712 732 2.501881 CCGAAAATTCTAAACGCACGG 58.498 47.619 0.00 0.00 0.00 4.94
713 733 2.158058 CCGAAAATTCTAAACGCACGGA 59.842 45.455 0.00 0.00 40.16 4.69
714 734 3.150731 CGAAAATTCTAAACGCACGGAC 58.849 45.455 0.00 0.00 0.00 4.79
715 735 3.120786 CGAAAATTCTAAACGCACGGACT 60.121 43.478 0.00 0.00 0.00 3.85
716 736 4.090354 CGAAAATTCTAAACGCACGGACTA 59.910 41.667 0.00 0.00 0.00 2.59
717 737 5.388682 CGAAAATTCTAAACGCACGGACTAA 60.389 40.000 0.00 0.00 0.00 2.24
718 738 6.490566 AAAATTCTAAACGCACGGACTAAT 57.509 33.333 0.00 0.00 0.00 1.73
719 739 7.463119 CGAAAATTCTAAACGCACGGACTAATA 60.463 37.037 0.00 0.00 0.00 0.98
720 740 6.579491 AATTCTAAACGCACGGACTAATAC 57.421 37.500 0.00 0.00 0.00 1.89
721 741 3.683989 TCTAAACGCACGGACTAATACG 58.316 45.455 0.00 0.00 38.54 3.06
722 742 1.632422 AAACGCACGGACTAATACGG 58.368 50.000 0.00 0.00 35.98 4.02
723 743 0.179129 AACGCACGGACTAATACGGG 60.179 55.000 0.00 0.00 39.28 5.28
724 744 1.299620 CGCACGGACTAATACGGGG 60.300 63.158 0.00 0.00 35.39 5.73
725 745 1.727511 CGCACGGACTAATACGGGGA 61.728 60.000 0.00 0.00 35.39 4.81
726 746 0.031721 GCACGGACTAATACGGGGAG 59.968 60.000 0.00 0.00 35.39 4.30
727 747 1.396653 CACGGACTAATACGGGGAGT 58.603 55.000 0.00 0.00 35.98 3.85
728 748 1.753073 CACGGACTAATACGGGGAGTT 59.247 52.381 0.00 0.00 35.98 3.01
729 749 2.167075 CACGGACTAATACGGGGAGTTT 59.833 50.000 0.00 0.00 35.98 2.66
730 750 3.381272 CACGGACTAATACGGGGAGTTTA 59.619 47.826 0.00 0.00 35.98 2.01
731 751 3.381590 ACGGACTAATACGGGGAGTTTAC 59.618 47.826 0.00 0.00 35.98 2.01
732 752 3.548818 CGGACTAATACGGGGAGTTTACG 60.549 52.174 0.00 0.00 0.00 3.18
733 753 3.243535 GGACTAATACGGGGAGTTTACGG 60.244 52.174 0.00 0.00 0.00 4.02
734 754 3.631250 ACTAATACGGGGAGTTTACGGA 58.369 45.455 0.00 0.00 0.00 4.69
735 755 2.967599 AATACGGGGAGTTTACGGAC 57.032 50.000 0.00 0.00 0.00 4.79
736 756 2.149973 ATACGGGGAGTTTACGGACT 57.850 50.000 0.00 0.00 0.00 3.85
737 757 1.463674 TACGGGGAGTTTACGGACTC 58.536 55.000 7.17 7.17 44.20 3.36
738 758 0.251519 ACGGGGAGTTTACGGACTCT 60.252 55.000 13.24 0.00 44.32 3.24
739 759 0.455005 CGGGGAGTTTACGGACTCTC 59.545 60.000 13.24 10.32 44.71 3.20
741 761 1.849977 GGGAGTTTACGGACTCTCCT 58.150 55.000 14.57 0.00 44.32 3.69
742 762 2.177734 GGGAGTTTACGGACTCTCCTT 58.822 52.381 14.57 0.00 44.32 3.36
743 763 2.166050 GGGAGTTTACGGACTCTCCTTC 59.834 54.545 14.57 0.00 44.32 3.46
744 764 2.159407 GGAGTTTACGGACTCTCCTTCG 60.159 54.545 9.37 0.00 44.32 3.79
745 765 2.487372 GAGTTTACGGACTCTCCTTCGT 59.513 50.000 8.15 0.00 42.18 3.85
746 766 2.889678 AGTTTACGGACTCTCCTTCGTT 59.110 45.455 0.00 0.00 37.10 3.85
747 767 4.074970 AGTTTACGGACTCTCCTTCGTTA 58.925 43.478 0.00 0.00 37.10 3.18
748 768 4.520492 AGTTTACGGACTCTCCTTCGTTAA 59.480 41.667 0.00 0.00 37.10 2.01
749 769 4.425577 TTACGGACTCTCCTTCGTTAAC 57.574 45.455 0.00 0.00 37.10 2.01
750 770 2.512705 ACGGACTCTCCTTCGTTAACT 58.487 47.619 3.71 0.00 33.30 2.24
751 771 3.679389 ACGGACTCTCCTTCGTTAACTA 58.321 45.455 3.71 0.00 33.30 2.24
752 772 4.074970 ACGGACTCTCCTTCGTTAACTAA 58.925 43.478 3.71 0.00 33.30 2.24
753 773 4.704057 ACGGACTCTCCTTCGTTAACTAAT 59.296 41.667 3.71 0.00 33.30 1.73
754 774 5.163673 ACGGACTCTCCTTCGTTAACTAATC 60.164 44.000 3.71 0.00 33.30 1.75
755 775 5.066246 CGGACTCTCCTTCGTTAACTAATCT 59.934 44.000 3.71 0.00 33.30 2.40
756 776 6.404513 CGGACTCTCCTTCGTTAACTAATCTT 60.405 42.308 3.71 0.00 33.30 2.40
757 777 7.321908 GGACTCTCCTTCGTTAACTAATCTTT 58.678 38.462 3.71 0.00 32.53 2.52
758 778 7.275999 GGACTCTCCTTCGTTAACTAATCTTTG 59.724 40.741 3.71 0.00 32.53 2.77
759 779 6.590677 ACTCTCCTTCGTTAACTAATCTTTGC 59.409 38.462 3.71 0.00 0.00 3.68
760 780 5.873164 TCTCCTTCGTTAACTAATCTTTGCC 59.127 40.000 3.71 0.00 0.00 4.52
761 781 4.939439 TCCTTCGTTAACTAATCTTTGCCC 59.061 41.667 3.71 0.00 0.00 5.36
762 782 4.095932 CCTTCGTTAACTAATCTTTGCCCC 59.904 45.833 3.71 0.00 0.00 5.80
763 783 3.613030 TCGTTAACTAATCTTTGCCCCC 58.387 45.455 3.71 0.00 0.00 5.40
784 804 1.549203 CTGATTTTCAGGGGGTGTGG 58.451 55.000 0.00 0.00 40.71 4.17
785 805 0.114168 TGATTTTCAGGGGGTGTGGG 59.886 55.000 0.00 0.00 0.00 4.61
786 806 0.614697 GATTTTCAGGGGGTGTGGGG 60.615 60.000 0.00 0.00 0.00 4.96
787 807 2.746947 ATTTTCAGGGGGTGTGGGGC 62.747 60.000 0.00 0.00 0.00 5.80
797 817 2.776526 TGTGGGGCCCTCACACTT 60.777 61.111 31.04 0.00 39.83 3.16
798 818 1.462432 TGTGGGGCCCTCACACTTA 60.462 57.895 31.04 16.06 39.83 2.24
799 819 0.844661 TGTGGGGCCCTCACACTTAT 60.845 55.000 31.04 0.00 39.83 1.73
800 820 0.331616 GTGGGGCCCTCACACTTATT 59.668 55.000 28.64 0.00 35.39 1.40
801 821 1.080638 TGGGGCCCTCACACTTATTT 58.919 50.000 25.93 0.00 0.00 1.40
802 822 1.005450 TGGGGCCCTCACACTTATTTC 59.995 52.381 25.93 0.00 0.00 2.17
803 823 1.285078 GGGGCCCTCACACTTATTTCT 59.715 52.381 24.38 0.00 0.00 2.52
804 824 2.291605 GGGGCCCTCACACTTATTTCTT 60.292 50.000 24.38 0.00 0.00 2.52
805 825 3.017442 GGGCCCTCACACTTATTTCTTC 58.983 50.000 17.04 0.00 0.00 2.87
806 826 3.017442 GGCCCTCACACTTATTTCTTCC 58.983 50.000 0.00 0.00 0.00 3.46
807 827 3.561313 GGCCCTCACACTTATTTCTTCCA 60.561 47.826 0.00 0.00 0.00 3.53
808 828 4.079253 GCCCTCACACTTATTTCTTCCAA 58.921 43.478 0.00 0.00 0.00 3.53
809 829 4.706962 GCCCTCACACTTATTTCTTCCAAT 59.293 41.667 0.00 0.00 0.00 3.16
810 830 5.163612 GCCCTCACACTTATTTCTTCCAATC 60.164 44.000 0.00 0.00 0.00 2.67
811 831 5.945784 CCCTCACACTTATTTCTTCCAATCA 59.054 40.000 0.00 0.00 0.00 2.57
812 832 6.604795 CCCTCACACTTATTTCTTCCAATCAT 59.395 38.462 0.00 0.00 0.00 2.45
813 833 7.775093 CCCTCACACTTATTTCTTCCAATCATA 59.225 37.037 0.00 0.00 0.00 2.15
814 834 9.347240 CCTCACACTTATTTCTTCCAATCATAT 57.653 33.333 0.00 0.00 0.00 1.78
824 844 9.597681 ATTTCTTCCAATCATATTATTCCAGCT 57.402 29.630 0.00 0.00 0.00 4.24
827 847 9.730705 TCTTCCAATCATATTATTCCAGCTAAG 57.269 33.333 0.00 0.00 0.00 2.18
828 848 7.928307 TCCAATCATATTATTCCAGCTAAGC 57.072 36.000 0.00 0.00 0.00 3.09
829 849 6.886459 TCCAATCATATTATTCCAGCTAAGCC 59.114 38.462 0.00 0.00 0.00 4.35
830 850 6.660521 CCAATCATATTATTCCAGCTAAGCCA 59.339 38.462 0.00 0.00 0.00 4.75
831 851 7.362401 CCAATCATATTATTCCAGCTAAGCCAC 60.362 40.741 0.00 0.00 0.00 5.01
832 852 5.560724 TCATATTATTCCAGCTAAGCCACC 58.439 41.667 0.00 0.00 0.00 4.61
833 853 2.729028 TTATTCCAGCTAAGCCACCC 57.271 50.000 0.00 0.00 0.00 4.61
834 854 0.843984 TATTCCAGCTAAGCCACCCC 59.156 55.000 0.00 0.00 0.00 4.95
835 855 2.270874 ATTCCAGCTAAGCCACCCCG 62.271 60.000 0.00 0.00 0.00 5.73
836 856 3.717294 CCAGCTAAGCCACCCCGT 61.717 66.667 0.00 0.00 0.00 5.28
837 857 2.436646 CAGCTAAGCCACCCCGTG 60.437 66.667 0.00 0.00 0.00 4.94
838 858 2.606519 AGCTAAGCCACCCCGTGA 60.607 61.111 0.00 0.00 35.23 4.35
839 859 2.221299 AGCTAAGCCACCCCGTGAA 61.221 57.895 0.00 0.00 35.23 3.18
840 860 2.038837 GCTAAGCCACCCCGTGAAC 61.039 63.158 0.00 0.00 35.23 3.18
841 861 1.373435 CTAAGCCACCCCGTGAACA 59.627 57.895 0.00 0.00 35.23 3.18
842 862 0.673644 CTAAGCCACCCCGTGAACAG 60.674 60.000 0.00 0.00 35.23 3.16
843 863 1.412453 TAAGCCACCCCGTGAACAGT 61.412 55.000 0.00 0.00 35.23 3.55
844 864 1.412453 AAGCCACCCCGTGAACAGTA 61.412 55.000 0.00 0.00 35.23 2.74
845 865 1.071814 GCCACCCCGTGAACAGTAA 59.928 57.895 0.00 0.00 35.23 2.24
846 866 0.535553 GCCACCCCGTGAACAGTAAA 60.536 55.000 0.00 0.00 35.23 2.01
847 867 1.970092 CCACCCCGTGAACAGTAAAA 58.030 50.000 0.00 0.00 35.23 1.52
848 868 1.877443 CCACCCCGTGAACAGTAAAAG 59.123 52.381 0.00 0.00 35.23 2.27
849 869 2.567985 CACCCCGTGAACAGTAAAAGT 58.432 47.619 0.00 0.00 35.23 2.66
850 870 2.946990 CACCCCGTGAACAGTAAAAGTT 59.053 45.455 0.00 0.00 35.23 2.66
851 871 4.128643 CACCCCGTGAACAGTAAAAGTTA 58.871 43.478 0.00 0.00 35.23 2.24
852 872 4.758165 CACCCCGTGAACAGTAAAAGTTAT 59.242 41.667 0.00 0.00 35.23 1.89
853 873 4.758165 ACCCCGTGAACAGTAAAAGTTATG 59.242 41.667 0.00 0.00 0.00 1.90
854 874 4.379082 CCCCGTGAACAGTAAAAGTTATGC 60.379 45.833 0.00 0.00 0.00 3.14
855 875 4.379082 CCCGTGAACAGTAAAAGTTATGCC 60.379 45.833 0.00 0.00 0.00 4.40
856 876 4.379082 CCGTGAACAGTAAAAGTTATGCCC 60.379 45.833 0.00 0.00 0.00 5.36
857 877 4.668177 CGTGAACAGTAAAAGTTATGCCCG 60.668 45.833 0.00 0.00 0.00 6.13
858 878 4.214758 GTGAACAGTAAAAGTTATGCCCGT 59.785 41.667 0.00 0.00 0.00 5.28
859 879 4.214545 TGAACAGTAAAAGTTATGCCCGTG 59.785 41.667 0.00 0.00 0.00 4.94
860 880 2.486592 ACAGTAAAAGTTATGCCCGTGC 59.513 45.455 0.00 0.00 38.26 5.34
861 881 1.735571 AGTAAAAGTTATGCCCGTGCG 59.264 47.619 0.00 0.00 41.78 5.34
862 882 1.465777 GTAAAAGTTATGCCCGTGCGT 59.534 47.619 0.00 0.00 41.78 5.24
863 883 0.239879 AAAAGTTATGCCCGTGCGTG 59.760 50.000 0.00 0.00 41.78 5.34
864 884 0.887387 AAAGTTATGCCCGTGCGTGT 60.887 50.000 0.00 0.00 41.78 4.49
865 885 0.037139 AAGTTATGCCCGTGCGTGTA 60.037 50.000 0.00 0.00 41.78 2.90
866 886 0.459585 AGTTATGCCCGTGCGTGTAG 60.460 55.000 0.00 0.00 41.78 2.74
924 947 2.224402 GCTCCTCTCTCTCTCTCTCTCC 60.224 59.091 0.00 0.00 0.00 3.71
931 954 3.041211 TCTCTCTCTCTCTCCCTCTCTG 58.959 54.545 0.00 0.00 0.00 3.35
1279 1302 3.243805 CGCTCAGATCTGATCCAGTCATT 60.244 47.826 25.30 0.00 39.13 2.57
1300 1323 2.486472 AGATGTTCTGCTGGTTCCTG 57.514 50.000 0.00 0.00 0.00 3.86
1397 1421 8.314143 TCCGAAAAGTATAAGTTGTTAGGTTG 57.686 34.615 0.00 0.00 0.00 3.77
1409 1433 7.964604 AGTTGTTAGGTTGTTCTGAAGATAC 57.035 36.000 0.00 0.00 0.00 2.24
1420 1444 7.439157 TGTTCTGAAGATACCTGTTGATTTG 57.561 36.000 0.00 0.00 0.00 2.32
1443 1467 9.891828 TTTGTATGACTAAGTGCTACAAATTTG 57.108 29.630 16.67 16.67 37.36 2.32
1455 1479 8.076178 AGTGCTACAAATTTGAGATGTTGTTAC 58.924 33.333 24.64 7.39 35.82 2.50
1457 1481 8.075574 TGCTACAAATTTGAGATGTTGTTACTG 58.924 33.333 24.64 0.00 35.82 2.74
1458 1482 7.061094 GCTACAAATTTGAGATGTTGTTACTGC 59.939 37.037 24.64 4.44 35.82 4.40
1459 1483 7.042797 ACAAATTTGAGATGTTGTTACTGCT 57.957 32.000 24.64 0.00 30.11 4.24
1460 1484 6.919662 ACAAATTTGAGATGTTGTTACTGCTG 59.080 34.615 24.64 0.00 30.11 4.41
1524 1574 6.268617 TGTTGTATGCCTAGCTCTCATATCTT 59.731 38.462 0.00 0.00 0.00 2.40
1558 1609 1.403647 GGGGCGTTTTTAGCATTGGTC 60.404 52.381 0.00 0.00 36.08 4.02
1694 1746 6.535274 ACACGTTGAACTTTTCCTATGTAC 57.465 37.500 0.00 0.00 0.00 2.90
1795 1847 5.467668 TCTCCAACTTCCTCCTGAGTATA 57.532 43.478 0.00 0.00 0.00 1.47
1847 1901 6.377327 AGAATAATATGGTTCTGTTTGGCG 57.623 37.500 2.89 0.00 33.64 5.69
1881 1935 7.619964 TCTCAACATATGTACACGAGACTTA 57.380 36.000 9.21 0.00 0.00 2.24
1882 1936 8.047413 TCTCAACATATGTACACGAGACTTAA 57.953 34.615 9.21 0.00 0.00 1.85
1927 1982 7.824672 TGCATGTGTCATTATTTGTATGTTGA 58.175 30.769 0.00 0.00 0.00 3.18
2268 2332 4.163078 AGGAGTAGCAGTATCAAATGCACT 59.837 41.667 0.00 2.39 45.01 4.40
2273 2337 7.275183 AGTAGCAGTATCAAATGCACTTGATA 58.725 34.615 22.97 22.97 42.84 2.15
2275 2339 6.789262 AGCAGTATCAAATGCACTTGATAAC 58.211 36.000 27.01 20.78 45.38 1.89
2285 2349 3.878086 CACTTGATAACGTTGTGCAGT 57.122 42.857 11.99 5.50 0.00 4.40
2327 2391 8.677148 TCTGTTTTCTGTTATGCTAAACTTCT 57.323 30.769 0.00 0.00 31.71 2.85
2328 2392 9.120538 TCTGTTTTCTGTTATGCTAAACTTCTT 57.879 29.630 0.00 0.00 31.71 2.52
2329 2393 9.387123 CTGTTTTCTGTTATGCTAAACTTCTTC 57.613 33.333 0.00 0.00 31.71 2.87
2360 2424 7.362401 GCAGCATTTCTTCCTATTTTCTCTTGA 60.362 37.037 0.00 0.00 0.00 3.02
2434 2498 2.651382 ACTTACGCCTTCCTGGTTTT 57.349 45.000 0.00 0.00 38.35 2.43
2435 2499 2.227194 ACTTACGCCTTCCTGGTTTTG 58.773 47.619 0.00 0.00 38.35 2.44
2725 2789 3.127030 CAGCGGAATCCTTTTGACTAACC 59.873 47.826 0.00 0.00 0.00 2.85
2734 2798 8.762481 AATCCTTTTGACTAACCTTGTAAACT 57.238 30.769 0.00 0.00 0.00 2.66
2912 2976 1.742761 CAAATCAGCCTCACCGATGT 58.257 50.000 0.00 0.00 0.00 3.06
2914 2978 1.742761 AATCAGCCTCACCGATGTTG 58.257 50.000 0.00 0.00 0.00 3.33
3069 3137 1.889829 GAGCACTCTACAGACCACAGT 59.110 52.381 0.00 0.00 0.00 3.55
3084 3152 3.254166 ACCACAGTTCTGATGCATGAAAC 59.746 43.478 2.46 5.62 0.00 2.78
3093 3161 4.583907 TCTGATGCATGAAACAGACCAAAA 59.416 37.500 9.54 0.00 35.01 2.44
3094 3162 4.873817 TGATGCATGAAACAGACCAAAAG 58.126 39.130 2.46 0.00 0.00 2.27
3095 3163 3.096489 TGCATGAAACAGACCAAAAGC 57.904 42.857 0.00 0.00 0.00 3.51
3109 3177 9.260002 ACAGACCAAAAGCTTAATTACAAATTG 57.740 29.630 0.00 0.00 0.00 2.32
3207 3275 6.494835 AGCCTTCTATTCAATTGACAAAAGGT 59.505 34.615 24.66 15.80 34.57 3.50
3416 3489 8.813643 AGTAGTTACTGTACATTGAAACACTC 57.186 34.615 0.00 0.00 34.72 3.51
3478 3576 8.918202 TGGAAGAAGATGCTCTTAAGTTTTTA 57.082 30.769 1.63 0.00 36.73 1.52
3518 3616 6.206829 AGCACTAAAGGAAACATTTGGTACTC 59.793 38.462 0.00 0.00 31.15 2.59
3523 3621 7.745620 AAAGGAAACATTTGGTACTCACTAG 57.254 36.000 0.00 0.00 0.00 2.57
3573 3672 7.775053 TTAGCATCAGTTTTACAAATCCCTT 57.225 32.000 0.00 0.00 0.00 3.95
3605 3705 5.412526 TGTGTGTTTATTGAAGGACGTTC 57.587 39.130 0.84 0.84 35.48 3.95
3646 3746 3.323979 TCTGTTTTGTAGTCCCTCTGTCC 59.676 47.826 0.00 0.00 0.00 4.02
3731 3831 9.523168 GACAGAGGGAGTACAATATAACTAGAT 57.477 37.037 0.00 0.00 0.00 1.98
3772 3872 6.277605 TCTTTCTTTCCAATGCATGCATATG 58.722 36.000 32.36 27.37 35.31 1.78
3809 3909 2.303175 GCCGCCCTTCCATTTATACAA 58.697 47.619 0.00 0.00 0.00 2.41
3815 3915 5.163457 CGCCCTTCCATTTATACAATTTGGT 60.163 40.000 0.78 0.00 0.00 3.67
3877 3977 9.520204 AACTTATATGTTGCTGTTTAATCATGC 57.480 29.630 3.35 0.00 0.00 4.06
3890 3990 6.209192 TGTTTAATCATGCTGAGATGGTTGTT 59.791 34.615 0.00 0.00 29.33 2.83
3926 4026 6.326583 CCCCTTCTTTCATCATACTACAGGTA 59.673 42.308 0.00 0.00 34.62 3.08
3953 4053 1.821136 GGCAAGAAATGGAAGGAGGTG 59.179 52.381 0.00 0.00 0.00 4.00
4043 4149 2.531206 GCACTAGGCACTCGTAGAAAG 58.469 52.381 0.00 0.00 43.97 2.62
4078 4184 2.289002 CAGCTGACTCTGTTTTGGTGTC 59.711 50.000 8.42 0.00 0.00 3.67
4145 4251 2.967740 CGATACACGGTGTAAGGCC 58.032 57.895 23.40 12.42 36.31 5.19
4163 4269 1.730501 CCGCACACATGATGAAGACT 58.269 50.000 0.00 0.00 0.00 3.24
4197 4303 2.103601 AGTGGCCGTGTAGTGTTTTACT 59.896 45.455 0.00 0.00 43.56 2.24
4302 4411 4.470334 TGCAGAGATGTTGTATGCACTA 57.530 40.909 0.00 0.00 41.65 2.74
4336 4445 8.006298 TCGCAATATCCCTTGATTTTAACAAT 57.994 30.769 0.00 0.00 32.18 2.71
4353 4462 0.983378 AATCCAGAGGAGGAACCCCG 60.983 60.000 0.00 0.00 41.92 5.73
4378 4487 0.409092 TGTGGGAAGTGGGATGCATT 59.591 50.000 0.00 0.00 0.00 3.56
4409 4519 9.369904 CTGTTTTAAGCATATATTTGCCTTGTT 57.630 29.630 13.70 5.33 43.83 2.83
4419 4529 9.722056 CATATATTTGCCTTGTTCAAGACTTAC 57.278 33.333 13.29 0.00 0.00 2.34
4425 4535 5.407387 TGCCTTGTTCAAGACTTACGTATTC 59.593 40.000 13.29 0.00 0.00 1.75
4504 4617 3.614616 GCGGTTCTAAGTTGATGAGACTG 59.385 47.826 0.00 0.00 0.00 3.51
4523 4636 4.326826 ACTGTGTTCCATACATGTCCAAG 58.673 43.478 0.00 0.00 39.39 3.61
4524 4637 4.202461 ACTGTGTTCCATACATGTCCAAGT 60.202 41.667 0.00 0.00 39.39 3.16
4525 4638 4.323417 TGTGTTCCATACATGTCCAAGTC 58.677 43.478 0.00 0.00 39.39 3.01
4526 4639 4.041567 TGTGTTCCATACATGTCCAAGTCT 59.958 41.667 0.00 0.00 39.39 3.24
4543 4665 5.392380 CCAAGTCTGCATAATCTGTTTCCAC 60.392 44.000 0.00 0.00 0.00 4.02
4556 4678 1.880027 GTTTCCACGTGCAATCTTCCT 59.120 47.619 10.91 0.00 0.00 3.36
4568 4690 3.374367 GCAATCTTCCTTTCCTCGTTACC 59.626 47.826 0.00 0.00 0.00 2.85
4575 4697 3.052338 TCCTTTCCTCGTTACCCTCCTAT 60.052 47.826 0.00 0.00 0.00 2.57
4648 4770 6.404293 CCCAATGATACCTTTTACGTTTGAGG 60.404 42.308 0.00 0.69 35.39 3.86
4664 4786 5.120830 CGTTTGAGGAAGTGGAAGTAAGATG 59.879 44.000 0.00 0.00 0.00 2.90
4720 4842 3.873952 GGTATCATCTGGCTTGTGAGTTC 59.126 47.826 0.00 0.00 0.00 3.01
4738 4862 7.039714 TGTGAGTTCAGCTCTAGTCTTTGAATA 60.040 37.037 0.00 0.00 44.41 1.75
4759 4883 3.599730 TTGTTGAATGTGGTTGCACAA 57.400 38.095 0.00 0.00 38.69 3.33
4849 4976 4.038883 CCCCTCCTACGTAAAGATGTAAGG 59.961 50.000 0.00 0.00 29.75 2.69
4850 4977 4.038883 CCCTCCTACGTAAAGATGTAAGGG 59.961 50.000 0.00 0.03 38.23 3.95
4851 4978 4.501058 CCTCCTACGTAAAGATGTAAGGGC 60.501 50.000 0.00 0.00 27.63 5.19
4852 4979 4.025360 TCCTACGTAAAGATGTAAGGGCA 58.975 43.478 0.00 0.00 0.00 5.36
4853 4980 4.652421 TCCTACGTAAAGATGTAAGGGCAT 59.348 41.667 0.00 0.00 0.00 4.40
4854 4981 4.750098 CCTACGTAAAGATGTAAGGGCATG 59.250 45.833 0.00 0.00 0.00 4.06
4855 4982 4.216411 ACGTAAAGATGTAAGGGCATGT 57.784 40.909 0.00 0.00 0.00 3.21
4856 4983 5.347620 ACGTAAAGATGTAAGGGCATGTA 57.652 39.130 0.00 0.00 0.00 2.29
4857 4984 5.114081 ACGTAAAGATGTAAGGGCATGTAC 58.886 41.667 0.00 0.00 0.00 2.90
4858 4985 5.113383 CGTAAAGATGTAAGGGCATGTACA 58.887 41.667 0.00 0.00 34.84 2.90
4859 4986 5.583061 CGTAAAGATGTAAGGGCATGTACAA 59.417 40.000 0.00 0.00 34.08 2.41
4860 4987 6.260050 CGTAAAGATGTAAGGGCATGTACAAT 59.740 38.462 0.00 0.00 34.08 2.71
4861 4988 6.455360 AAAGATGTAAGGGCATGTACAATG 57.545 37.500 0.00 0.12 34.08 2.82
4862 4989 4.464008 AGATGTAAGGGCATGTACAATGG 58.536 43.478 0.00 0.00 34.08 3.16
4863 4990 3.730215 TGTAAGGGCATGTACAATGGT 57.270 42.857 0.00 0.00 0.00 3.55
4864 4991 4.846168 TGTAAGGGCATGTACAATGGTA 57.154 40.909 0.00 0.00 0.00 3.25
4879 5006 8.576936 GTACAATGGTACTATCTTAAGAGTGC 57.423 38.462 11.53 7.73 45.19 4.40
4880 5007 6.583562 ACAATGGTACTATCTTAAGAGTGCC 58.416 40.000 19.07 19.07 46.27 5.01
4883 5010 4.608951 GGTACTATCTTAAGAGTGCCACG 58.391 47.826 20.26 4.74 45.63 4.94
4884 5011 4.097589 GGTACTATCTTAAGAGTGCCACGT 59.902 45.833 20.26 9.02 45.63 4.49
4885 5012 5.297776 GGTACTATCTTAAGAGTGCCACGTA 59.702 44.000 20.26 8.30 45.63 3.57
4886 5013 5.502153 ACTATCTTAAGAGTGCCACGTAG 57.498 43.478 11.53 7.49 0.00 3.51
4887 5014 3.802948 ATCTTAAGAGTGCCACGTAGG 57.197 47.619 11.53 0.00 41.84 3.18
4888 5015 2.799017 TCTTAAGAGTGCCACGTAGGA 58.201 47.619 0.00 0.00 41.22 2.94
4889 5016 3.362706 TCTTAAGAGTGCCACGTAGGAT 58.637 45.455 0.00 0.00 41.22 3.24
4890 5017 4.529897 TCTTAAGAGTGCCACGTAGGATA 58.470 43.478 0.00 0.00 41.22 2.59
4891 5018 5.138276 TCTTAAGAGTGCCACGTAGGATAT 58.862 41.667 0.00 0.00 41.22 1.63
4892 5019 6.301486 TCTTAAGAGTGCCACGTAGGATATA 58.699 40.000 0.00 0.00 41.22 0.86
4893 5020 6.946583 TCTTAAGAGTGCCACGTAGGATATAT 59.053 38.462 0.00 0.00 41.22 0.86
4894 5021 5.392767 AAGAGTGCCACGTAGGATATATG 57.607 43.478 8.04 0.00 41.22 1.78
4895 5022 3.764434 AGAGTGCCACGTAGGATATATGG 59.236 47.826 8.04 0.00 41.22 2.74
4896 5023 3.507411 AGTGCCACGTAGGATATATGGT 58.493 45.455 8.04 0.00 41.22 3.55
4897 5024 4.669700 AGTGCCACGTAGGATATATGGTA 58.330 43.478 8.04 0.00 41.22 3.25
4898 5025 5.081728 AGTGCCACGTAGGATATATGGTAA 58.918 41.667 8.04 0.00 41.22 2.85
4899 5026 5.185249 AGTGCCACGTAGGATATATGGTAAG 59.815 44.000 8.04 0.00 41.22 2.34
4900 5027 4.464951 TGCCACGTAGGATATATGGTAAGG 59.535 45.833 8.04 0.00 41.22 2.69
4901 5028 4.465305 GCCACGTAGGATATATGGTAAGGT 59.535 45.833 8.04 0.00 41.22 3.50
4902 5029 5.623824 GCCACGTAGGATATATGGTAAGGTG 60.624 48.000 8.04 0.00 41.22 4.00
4903 5030 5.105473 CCACGTAGGATATATGGTAAGGTGG 60.105 48.000 0.00 1.34 41.22 4.61
4904 5031 5.713389 CACGTAGGATATATGGTAAGGTGGA 59.287 44.000 0.00 0.00 0.00 4.02
4905 5032 5.950549 ACGTAGGATATATGGTAAGGTGGAG 59.049 44.000 0.00 0.00 0.00 3.86
4906 5033 5.360144 CGTAGGATATATGGTAAGGTGGAGG 59.640 48.000 0.00 0.00 0.00 4.30
4907 5034 5.633473 AGGATATATGGTAAGGTGGAGGA 57.367 43.478 0.00 0.00 0.00 3.71
4908 5035 5.594777 AGGATATATGGTAAGGTGGAGGAG 58.405 45.833 0.00 0.00 0.00 3.69
4909 5036 5.318889 AGGATATATGGTAAGGTGGAGGAGA 59.681 44.000 0.00 0.00 0.00 3.71
4910 5037 5.659079 GGATATATGGTAAGGTGGAGGAGAG 59.341 48.000 0.00 0.00 0.00 3.20
4911 5038 4.834406 ATATGGTAAGGTGGAGGAGAGA 57.166 45.455 0.00 0.00 0.00 3.10
4912 5039 2.534042 TGGTAAGGTGGAGGAGAGAG 57.466 55.000 0.00 0.00 0.00 3.20
4913 5040 2.000803 TGGTAAGGTGGAGGAGAGAGA 58.999 52.381 0.00 0.00 0.00 3.10
4914 5041 2.382305 TGGTAAGGTGGAGGAGAGAGAA 59.618 50.000 0.00 0.00 0.00 2.87
4915 5042 2.761767 GGTAAGGTGGAGGAGAGAGAAC 59.238 54.545 0.00 0.00 0.00 3.01
4916 5043 3.564790 GGTAAGGTGGAGGAGAGAGAACT 60.565 52.174 0.00 0.00 0.00 3.01
4917 5044 2.525105 AGGTGGAGGAGAGAGAACTC 57.475 55.000 0.00 0.00 42.90 3.01
4918 5045 1.713647 AGGTGGAGGAGAGAGAACTCA 59.286 52.381 4.64 0.00 44.79 3.41
4919 5046 2.314549 AGGTGGAGGAGAGAGAACTCAT 59.685 50.000 4.64 0.00 44.79 2.90
4920 5047 3.529734 AGGTGGAGGAGAGAGAACTCATA 59.470 47.826 4.64 0.00 44.79 2.15
4921 5048 4.017037 AGGTGGAGGAGAGAGAACTCATAA 60.017 45.833 4.64 0.00 44.79 1.90
4922 5049 4.340950 GGTGGAGGAGAGAGAACTCATAAG 59.659 50.000 4.64 0.00 44.79 1.73
4923 5050 5.197451 GTGGAGGAGAGAGAACTCATAAGA 58.803 45.833 4.64 0.00 44.79 2.10
4924 5051 5.654650 GTGGAGGAGAGAGAACTCATAAGAA 59.345 44.000 4.64 0.00 44.79 2.52
4925 5052 6.153680 GTGGAGGAGAGAGAACTCATAAGAAA 59.846 42.308 4.64 0.00 44.79 2.52
4926 5053 6.726299 TGGAGGAGAGAGAACTCATAAGAAAA 59.274 38.462 4.64 0.00 44.79 2.29
4927 5054 7.093552 TGGAGGAGAGAGAACTCATAAGAAAAG 60.094 40.741 4.64 0.00 44.79 2.27
4928 5055 7.123547 GGAGGAGAGAGAACTCATAAGAAAAGA 59.876 40.741 4.64 0.00 44.79 2.52
4929 5056 7.836842 AGGAGAGAGAACTCATAAGAAAAGAC 58.163 38.462 4.64 0.00 44.79 3.01
4930 5057 7.673926 AGGAGAGAGAACTCATAAGAAAAGACT 59.326 37.037 4.64 0.00 44.79 3.24
4931 5058 8.311109 GGAGAGAGAACTCATAAGAAAAGACTT 58.689 37.037 4.64 0.00 44.79 3.01
4932 5059 9.139174 GAGAGAGAACTCATAAGAAAAGACTTG 57.861 37.037 4.64 0.00 44.79 3.16
4933 5060 8.646900 AGAGAGAACTCATAAGAAAAGACTTGT 58.353 33.333 4.64 0.00 44.79 3.16
4934 5061 8.825667 AGAGAACTCATAAGAAAAGACTTGTC 57.174 34.615 0.00 0.00 0.00 3.18
4935 5062 8.646900 AGAGAACTCATAAGAAAAGACTTGTCT 58.353 33.333 1.69 1.69 0.00 3.41
4936 5063 9.267084 GAGAACTCATAAGAAAAGACTTGTCTT 57.733 33.333 21.59 21.59 35.77 3.01
4937 5064 9.267084 AGAACTCATAAGAAAAGACTTGTCTTC 57.733 33.333 21.53 8.09 33.70 2.87
4938 5065 9.267084 GAACTCATAAGAAAAGACTTGTCTTCT 57.733 33.333 21.53 11.28 33.70 2.85
4939 5066 8.825667 ACTCATAAGAAAAGACTTGTCTTCTC 57.174 34.615 21.53 11.71 33.70 2.87
4940 5067 8.646900 ACTCATAAGAAAAGACTTGTCTTCTCT 58.353 33.333 21.53 13.63 33.70 3.10
4941 5068 9.487790 CTCATAAGAAAAGACTTGTCTTCTCTT 57.512 33.333 25.61 25.61 39.50 2.85
4983 5110 8.464770 GAGATGATCTCTTAGCACAATATGTC 57.535 38.462 14.98 0.00 40.30 3.06
4984 5111 8.192743 AGATGATCTCTTAGCACAATATGTCT 57.807 34.615 0.00 0.00 0.00 3.41
4985 5112 8.306038 AGATGATCTCTTAGCACAATATGTCTC 58.694 37.037 0.00 0.00 0.00 3.36
4986 5113 7.352079 TGATCTCTTAGCACAATATGTCTCA 57.648 36.000 0.00 0.00 0.00 3.27
4987 5114 7.205992 TGATCTCTTAGCACAATATGTCTCAC 58.794 38.462 0.00 0.00 0.00 3.51
4988 5115 5.907207 TCTCTTAGCACAATATGTCTCACC 58.093 41.667 0.00 0.00 0.00 4.02
4989 5116 5.422012 TCTCTTAGCACAATATGTCTCACCA 59.578 40.000 0.00 0.00 0.00 4.17
4990 5117 6.098838 TCTCTTAGCACAATATGTCTCACCAT 59.901 38.462 0.00 0.00 0.00 3.55
4991 5118 6.051074 TCTTAGCACAATATGTCTCACCATG 58.949 40.000 0.00 0.00 0.00 3.66
4992 5119 4.226427 AGCACAATATGTCTCACCATGT 57.774 40.909 0.00 0.00 0.00 3.21
4993 5120 4.592942 AGCACAATATGTCTCACCATGTT 58.407 39.130 0.00 0.00 0.00 2.71
4994 5121 5.012239 AGCACAATATGTCTCACCATGTTT 58.988 37.500 0.00 0.00 0.00 2.83
4995 5122 5.477984 AGCACAATATGTCTCACCATGTTTT 59.522 36.000 0.00 0.00 0.00 2.43
4996 5123 6.015180 AGCACAATATGTCTCACCATGTTTTT 60.015 34.615 0.00 0.00 0.00 1.94
4997 5124 7.176515 AGCACAATATGTCTCACCATGTTTTTA 59.823 33.333 0.00 0.00 0.00 1.52
4998 5125 7.485913 GCACAATATGTCTCACCATGTTTTTAG 59.514 37.037 0.00 0.00 0.00 1.85
4999 5126 7.970061 CACAATATGTCTCACCATGTTTTTAGG 59.030 37.037 0.00 0.00 0.00 2.69
5000 5127 7.888021 ACAATATGTCTCACCATGTTTTTAGGA 59.112 33.333 0.00 0.00 0.00 2.94
5001 5128 8.739039 CAATATGTCTCACCATGTTTTTAGGAA 58.261 33.333 0.00 0.00 0.00 3.36
5002 5129 9.479549 AATATGTCTCACCATGTTTTTAGGAAT 57.520 29.630 0.00 0.00 0.00 3.01
5004 5131 8.877864 ATGTCTCACCATGTTTTTAGGAATAA 57.122 30.769 0.00 0.00 0.00 1.40
5005 5132 8.106247 TGTCTCACCATGTTTTTAGGAATAAC 57.894 34.615 0.00 0.00 0.00 1.89
5006 5133 7.942341 TGTCTCACCATGTTTTTAGGAATAACT 59.058 33.333 0.00 0.00 0.00 2.24
5007 5134 9.444600 GTCTCACCATGTTTTTAGGAATAACTA 57.555 33.333 0.00 0.00 0.00 2.24
5035 5162 9.988815 TTATTGAAGATAAGGCTAAGAGATGAC 57.011 33.333 0.00 0.00 0.00 3.06
5036 5163 6.412362 TGAAGATAAGGCTAAGAGATGACC 57.588 41.667 0.00 0.00 0.00 4.02
5037 5164 5.305644 TGAAGATAAGGCTAAGAGATGACCC 59.694 44.000 0.00 0.00 0.00 4.46
5038 5165 4.820775 AGATAAGGCTAAGAGATGACCCA 58.179 43.478 0.00 0.00 0.00 4.51
5039 5166 5.410602 AGATAAGGCTAAGAGATGACCCAT 58.589 41.667 0.00 0.00 0.00 4.00
5040 5167 5.848921 AGATAAGGCTAAGAGATGACCCATT 59.151 40.000 0.00 0.00 0.00 3.16
5041 5168 3.853355 AGGCTAAGAGATGACCCATTG 57.147 47.619 0.00 0.00 0.00 2.82
5042 5169 3.118531 AGGCTAAGAGATGACCCATTGT 58.881 45.455 0.00 0.00 0.00 2.71
5043 5170 4.298626 AGGCTAAGAGATGACCCATTGTA 58.701 43.478 0.00 0.00 0.00 2.41
5044 5171 4.346418 AGGCTAAGAGATGACCCATTGTAG 59.654 45.833 0.00 0.00 0.00 2.74
5045 5172 4.345257 GGCTAAGAGATGACCCATTGTAGA 59.655 45.833 0.00 0.00 0.00 2.59
5046 5173 5.293560 GCTAAGAGATGACCCATTGTAGAC 58.706 45.833 0.00 0.00 0.00 2.59
5047 5174 5.163405 GCTAAGAGATGACCCATTGTAGACA 60.163 44.000 0.00 0.00 0.00 3.41
5048 5175 5.762179 AAGAGATGACCCATTGTAGACAA 57.238 39.130 0.00 0.00 40.51 3.18
5049 5176 5.762179 AGAGATGACCCATTGTAGACAAA 57.238 39.130 0.00 0.00 39.55 2.83
5050 5177 6.319048 AGAGATGACCCATTGTAGACAAAT 57.681 37.500 0.00 0.00 39.55 2.32
5051 5178 6.725364 AGAGATGACCCATTGTAGACAAATT 58.275 36.000 0.00 0.00 39.55 1.82
5052 5179 7.177878 AGAGATGACCCATTGTAGACAAATTT 58.822 34.615 0.00 0.00 39.55 1.82
5053 5180 7.671398 AGAGATGACCCATTGTAGACAAATTTT 59.329 33.333 0.00 0.00 39.55 1.82
5054 5181 8.193953 AGATGACCCATTGTAGACAAATTTTT 57.806 30.769 0.00 0.00 39.55 1.94
5116 5243 9.770097 AGACTATCTTATCAACCATTGTACATG 57.230 33.333 0.00 0.00 0.00 3.21
5117 5244 8.383318 ACTATCTTATCAACCATTGTACATGC 57.617 34.615 0.00 0.00 0.00 4.06
5118 5245 6.639632 ATCTTATCAACCATTGTACATGCC 57.360 37.500 0.00 0.00 0.00 4.40
5119 5246 4.887071 TCTTATCAACCATTGTACATGCCC 59.113 41.667 0.00 0.00 0.00 5.36
5120 5247 2.897271 TCAACCATTGTACATGCCCT 57.103 45.000 0.00 0.00 0.00 5.19
5121 5248 4.518278 ATCAACCATTGTACATGCCCTA 57.482 40.909 0.00 0.00 0.00 3.53
5122 5249 4.308526 TCAACCATTGTACATGCCCTAA 57.691 40.909 0.00 0.00 0.00 2.69
5123 5250 4.269183 TCAACCATTGTACATGCCCTAAG 58.731 43.478 0.00 0.00 0.00 2.18
5124 5251 2.654863 ACCATTGTACATGCCCTAAGC 58.345 47.619 0.00 0.00 44.14 3.09
5125 5252 2.242196 ACCATTGTACATGCCCTAAGCT 59.758 45.455 0.00 0.00 44.23 3.74
5126 5253 3.290710 CCATTGTACATGCCCTAAGCTT 58.709 45.455 3.48 3.48 44.23 3.74
5131 5258 3.179925 CATGCCCTAAGCTTGCTCA 57.820 52.632 9.86 2.12 44.23 4.26
5132 5259 0.737219 CATGCCCTAAGCTTGCTCAC 59.263 55.000 9.86 0.00 44.23 3.51
5133 5260 0.394899 ATGCCCTAAGCTTGCTCACC 60.395 55.000 9.86 0.00 44.23 4.02
5134 5261 1.002134 GCCCTAAGCTTGCTCACCA 60.002 57.895 9.86 0.00 38.99 4.17
5135 5262 0.609131 GCCCTAAGCTTGCTCACCAA 60.609 55.000 9.86 0.00 38.99 3.67
5136 5263 1.957113 GCCCTAAGCTTGCTCACCAAT 60.957 52.381 9.86 0.00 38.99 3.16
5137 5264 1.747355 CCCTAAGCTTGCTCACCAATG 59.253 52.381 9.86 0.00 31.91 2.82
5138 5265 2.618816 CCCTAAGCTTGCTCACCAATGA 60.619 50.000 9.86 0.00 31.91 2.57
5139 5266 3.084039 CCTAAGCTTGCTCACCAATGAA 58.916 45.455 9.86 0.00 33.30 2.57
5140 5267 3.698040 CCTAAGCTTGCTCACCAATGAAT 59.302 43.478 9.86 0.00 33.30 2.57
5141 5268 4.883585 CCTAAGCTTGCTCACCAATGAATA 59.116 41.667 9.86 0.00 33.30 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 6.694411 GCAACATATGGTCTATTGCAAAGAAG 59.306 38.462 18.16 1.56 44.01 2.85
42 43 6.593382 AGAATCTCTACTGTGAATGTTTCTGC 59.407 38.462 0.00 0.00 0.00 4.26
108 109 2.159310 CGTTCCACAACAACACCAATGT 60.159 45.455 0.00 0.00 42.46 2.71
119 120 1.295792 TGCAGAAGTCGTTCCACAAC 58.704 50.000 0.00 0.00 32.48 3.32
123 124 1.295792 GTGTTGCAGAAGTCGTTCCA 58.704 50.000 0.00 0.00 32.48 3.53
140 158 7.821595 AAACAAATCTGCAACATCATATGTG 57.178 32.000 1.90 3.41 44.07 3.21
144 162 8.525316 AGATGAAAACAAATCTGCAACATCATA 58.475 29.630 0.00 0.00 35.55 2.15
147 165 7.647907 AAGATGAAAACAAATCTGCAACATC 57.352 32.000 0.00 0.00 33.42 3.06
205 223 5.266733 ACATCATTTGTGTTGCAGAAGTT 57.733 34.783 0.00 0.00 37.11 2.66
267 287 2.288666 GAGTCCTTTCACAACAGCACA 58.711 47.619 0.00 0.00 0.00 4.57
271 291 1.876156 GCAGGAGTCCTTTCACAACAG 59.124 52.381 9.68 0.00 0.00 3.16
276 296 1.604278 GTGTTGCAGGAGTCCTTTCAC 59.396 52.381 9.68 12.16 0.00 3.18
277 297 1.211703 TGTGTTGCAGGAGTCCTTTCA 59.788 47.619 9.68 7.91 0.00 2.69
309 329 4.532834 TCTGCCACCTTAACAGTTTTTCT 58.467 39.130 0.00 0.00 33.12 2.52
316 336 0.036732 TGCCTCTGCCACCTTAACAG 59.963 55.000 0.00 0.00 36.33 3.16
342 362 3.749064 ATGACTCAGTCCGCGCGT 61.749 61.111 29.95 7.99 0.00 6.01
349 369 0.035317 TGGCACCACATGACTCAGTC 59.965 55.000 0.00 0.00 37.17 3.51
350 370 0.250467 GTGGCACCACATGACTCAGT 60.250 55.000 14.97 0.00 45.53 3.41
351 371 1.293963 CGTGGCACCACATGACTCAG 61.294 60.000 19.38 0.00 46.47 3.35
352 372 1.301637 CGTGGCACCACATGACTCA 60.302 57.895 19.38 0.00 46.47 3.41
353 373 0.602638 TTCGTGGCACCACATGACTC 60.603 55.000 19.38 0.00 46.47 3.36
354 374 0.036732 ATTCGTGGCACCACATGACT 59.963 50.000 19.38 1.75 46.47 3.41
355 375 1.732941 TATTCGTGGCACCACATGAC 58.267 50.000 19.38 0.00 46.47 3.06
356 376 2.355197 CTTATTCGTGGCACCACATGA 58.645 47.619 19.38 6.94 46.47 3.07
357 377 1.401552 CCTTATTCGTGGCACCACATG 59.598 52.381 19.38 4.63 46.47 3.21
396 416 4.101790 CCGGACGGTGCACAATGC 62.102 66.667 20.43 10.07 45.29 3.56
406 426 2.358247 CCAAGTTCCACCGGACGG 60.358 66.667 9.46 9.56 42.03 4.79
413 433 1.515521 CCGCCAGAACCAAGTTCCAC 61.516 60.000 3.91 0.00 42.85 4.02
424 444 2.437180 CTCATGCAGCCGCCAGAA 60.437 61.111 0.00 0.00 37.32 3.02
425 445 3.709633 ACTCATGCAGCCGCCAGA 61.710 61.111 0.00 0.00 37.32 3.86
433 453 2.743752 CGTTCCGCCACTCATGCAG 61.744 63.158 0.00 0.00 0.00 4.41
480 500 7.303182 AGAAGGTAAAAGAAAAGGGAAATGG 57.697 36.000 0.00 0.00 0.00 3.16
513 533 7.497249 CCTCGATTTTCCTGTGATCTAGAAAAT 59.503 37.037 17.55 17.55 46.33 1.82
534 554 6.578944 TCTCGATTTATTTTGATTCCCTCGA 58.421 36.000 0.00 0.00 0.00 4.04
571 591 3.426615 TCATCCACCGGTTTTAGCATTT 58.573 40.909 2.97 0.00 0.00 2.32
573 593 2.799126 TCATCCACCGGTTTTAGCAT 57.201 45.000 2.97 0.00 0.00 3.79
574 594 2.432444 CTTCATCCACCGGTTTTAGCA 58.568 47.619 2.97 0.00 0.00 3.49
683 703 0.698818 AGAATTTTCGGGGCAGAGGT 59.301 50.000 0.00 0.00 0.00 3.85
685 705 3.181510 CGTTTAGAATTTTCGGGGCAGAG 60.182 47.826 0.00 0.00 0.00 3.35
687 707 2.731027 GCGTTTAGAATTTTCGGGGCAG 60.731 50.000 0.00 0.00 0.00 4.85
688 708 1.200484 GCGTTTAGAATTTTCGGGGCA 59.800 47.619 0.00 0.00 0.00 5.36
689 709 1.200484 TGCGTTTAGAATTTTCGGGGC 59.800 47.619 0.00 0.00 0.00 5.80
691 711 2.501881 CGTGCGTTTAGAATTTTCGGG 58.498 47.619 0.00 0.00 0.00 5.14
692 712 2.158058 TCCGTGCGTTTAGAATTTTCGG 59.842 45.455 0.00 0.00 37.29 4.30
693 713 3.120786 AGTCCGTGCGTTTAGAATTTTCG 60.121 43.478 0.00 0.00 0.00 3.46
694 714 4.400036 AGTCCGTGCGTTTAGAATTTTC 57.600 40.909 0.00 0.00 0.00 2.29
695 715 5.927954 TTAGTCCGTGCGTTTAGAATTTT 57.072 34.783 0.00 0.00 0.00 1.82
696 716 6.237648 CGTATTAGTCCGTGCGTTTAGAATTT 60.238 38.462 0.00 0.00 0.00 1.82
697 717 5.230726 CGTATTAGTCCGTGCGTTTAGAATT 59.769 40.000 0.00 0.00 0.00 2.17
698 718 4.736793 CGTATTAGTCCGTGCGTTTAGAAT 59.263 41.667 0.00 0.00 0.00 2.40
699 719 4.097714 CGTATTAGTCCGTGCGTTTAGAA 58.902 43.478 0.00 0.00 0.00 2.10
700 720 3.487376 CCGTATTAGTCCGTGCGTTTAGA 60.487 47.826 0.00 0.00 0.00 2.10
701 721 2.785477 CCGTATTAGTCCGTGCGTTTAG 59.215 50.000 0.00 0.00 0.00 1.85
702 722 2.479389 CCCGTATTAGTCCGTGCGTTTA 60.479 50.000 0.00 0.00 0.00 2.01
703 723 1.632422 CCGTATTAGTCCGTGCGTTT 58.368 50.000 0.00 0.00 0.00 3.60
704 724 0.179129 CCCGTATTAGTCCGTGCGTT 60.179 55.000 0.00 0.00 0.00 4.84
705 725 1.434696 CCCGTATTAGTCCGTGCGT 59.565 57.895 0.00 0.00 0.00 5.24
706 726 1.299620 CCCCGTATTAGTCCGTGCG 60.300 63.158 0.00 0.00 0.00 5.34
707 727 0.031721 CTCCCCGTATTAGTCCGTGC 59.968 60.000 0.00 0.00 0.00 5.34
708 728 1.396653 ACTCCCCGTATTAGTCCGTG 58.603 55.000 0.00 0.00 0.00 4.94
709 729 2.149973 AACTCCCCGTATTAGTCCGT 57.850 50.000 0.00 0.00 0.00 4.69
710 730 3.548818 CGTAAACTCCCCGTATTAGTCCG 60.549 52.174 0.00 0.00 0.00 4.79
711 731 3.243535 CCGTAAACTCCCCGTATTAGTCC 60.244 52.174 0.00 0.00 0.00 3.85
712 732 3.632145 TCCGTAAACTCCCCGTATTAGTC 59.368 47.826 0.00 0.00 0.00 2.59
713 733 3.381590 GTCCGTAAACTCCCCGTATTAGT 59.618 47.826 0.00 0.00 0.00 2.24
714 734 3.633986 AGTCCGTAAACTCCCCGTATTAG 59.366 47.826 0.00 0.00 0.00 1.73
715 735 3.631250 AGTCCGTAAACTCCCCGTATTA 58.369 45.455 0.00 0.00 0.00 0.98
716 736 2.428530 GAGTCCGTAAACTCCCCGTATT 59.571 50.000 0.00 0.00 39.85 1.89
717 737 2.027385 GAGTCCGTAAACTCCCCGTAT 58.973 52.381 0.00 0.00 39.85 3.06
718 738 1.004745 AGAGTCCGTAAACTCCCCGTA 59.995 52.381 6.31 0.00 45.61 4.02
719 739 0.251519 AGAGTCCGTAAACTCCCCGT 60.252 55.000 6.31 0.00 45.61 5.28
720 740 0.455005 GAGAGTCCGTAAACTCCCCG 59.545 60.000 6.31 0.00 45.61 5.73
721 741 0.822811 GGAGAGTCCGTAAACTCCCC 59.177 60.000 0.00 1.55 45.61 4.81
722 742 1.849977 AGGAGAGTCCGTAAACTCCC 58.150 55.000 0.00 9.36 46.88 4.30
723 743 2.159407 CGAAGGAGAGTCCGTAAACTCC 60.159 54.545 0.00 0.00 45.61 3.85
724 744 2.487372 ACGAAGGAGAGTCCGTAAACTC 59.513 50.000 0.00 2.54 42.75 3.01
725 745 2.512705 ACGAAGGAGAGTCCGTAAACT 58.487 47.619 0.00 0.00 42.75 2.66
726 746 3.294816 AACGAAGGAGAGTCCGTAAAC 57.705 47.619 0.00 0.00 42.75 2.01
727 747 4.520492 AGTTAACGAAGGAGAGTCCGTAAA 59.480 41.667 0.00 0.00 42.75 2.01
728 748 4.074970 AGTTAACGAAGGAGAGTCCGTAA 58.925 43.478 0.00 0.00 42.75 3.18
729 749 3.679389 AGTTAACGAAGGAGAGTCCGTA 58.321 45.455 0.00 0.00 42.75 4.02
730 750 2.512705 AGTTAACGAAGGAGAGTCCGT 58.487 47.619 0.00 0.00 42.75 4.69
731 751 4.691860 TTAGTTAACGAAGGAGAGTCCG 57.308 45.455 0.00 0.00 42.75 4.79
732 752 6.453926 AGATTAGTTAACGAAGGAGAGTCC 57.546 41.667 7.25 0.00 36.58 3.85
733 753 7.201453 GCAAAGATTAGTTAACGAAGGAGAGTC 60.201 40.741 7.25 0.00 0.00 3.36
734 754 6.590677 GCAAAGATTAGTTAACGAAGGAGAGT 59.409 38.462 7.25 0.00 0.00 3.24
735 755 6.036191 GGCAAAGATTAGTTAACGAAGGAGAG 59.964 42.308 7.25 0.00 0.00 3.20
736 756 5.873164 GGCAAAGATTAGTTAACGAAGGAGA 59.127 40.000 7.25 0.00 0.00 3.71
737 757 5.064834 GGGCAAAGATTAGTTAACGAAGGAG 59.935 44.000 7.25 0.00 0.00 3.69
738 758 4.939439 GGGCAAAGATTAGTTAACGAAGGA 59.061 41.667 7.25 0.00 0.00 3.36
739 759 4.095932 GGGGCAAAGATTAGTTAACGAAGG 59.904 45.833 7.25 0.00 0.00 3.46
740 760 4.095932 GGGGGCAAAGATTAGTTAACGAAG 59.904 45.833 7.25 0.00 0.00 3.79
741 761 4.011698 GGGGGCAAAGATTAGTTAACGAA 58.988 43.478 3.52 3.52 0.00 3.85
742 762 3.613030 GGGGGCAAAGATTAGTTAACGA 58.387 45.455 0.00 0.00 0.00 3.85
765 785 1.549203 CCACACCCCCTGAAAATCAG 58.451 55.000 0.32 0.32 43.91 2.90
766 786 0.114168 CCCACACCCCCTGAAAATCA 59.886 55.000 0.00 0.00 0.00 2.57
767 787 0.614697 CCCCACACCCCCTGAAAATC 60.615 60.000 0.00 0.00 0.00 2.17
768 788 1.469251 CCCCACACCCCCTGAAAAT 59.531 57.895 0.00 0.00 0.00 1.82
769 789 2.939298 CCCCACACCCCCTGAAAA 59.061 61.111 0.00 0.00 0.00 2.29
770 790 3.909651 GCCCCACACCCCCTGAAA 61.910 66.667 0.00 0.00 0.00 2.69
780 800 0.844661 ATAAGTGTGAGGGCCCCACA 60.845 55.000 31.04 31.04 41.68 4.17
781 801 0.331616 AATAAGTGTGAGGGCCCCAC 59.668 55.000 27.54 27.54 35.23 4.61
782 802 1.005450 GAAATAAGTGTGAGGGCCCCA 59.995 52.381 21.43 14.13 0.00 4.96
783 803 1.285078 AGAAATAAGTGTGAGGGCCCC 59.715 52.381 21.43 11.17 0.00 5.80
784 804 2.808906 AGAAATAAGTGTGAGGGCCC 57.191 50.000 16.46 16.46 0.00 5.80
785 805 3.017442 GGAAGAAATAAGTGTGAGGGCC 58.983 50.000 0.00 0.00 0.00 5.80
786 806 3.686016 TGGAAGAAATAAGTGTGAGGGC 58.314 45.455 0.00 0.00 0.00 5.19
787 807 5.945784 TGATTGGAAGAAATAAGTGTGAGGG 59.054 40.000 0.00 0.00 0.00 4.30
788 808 7.636150 ATGATTGGAAGAAATAAGTGTGAGG 57.364 36.000 0.00 0.00 0.00 3.86
798 818 9.597681 AGCTGGAATAATATGATTGGAAGAAAT 57.402 29.630 0.00 0.00 0.00 2.17
801 821 9.730705 CTTAGCTGGAATAATATGATTGGAAGA 57.269 33.333 0.00 0.00 0.00 2.87
802 822 8.457261 GCTTAGCTGGAATAATATGATTGGAAG 58.543 37.037 0.00 0.00 0.00 3.46
803 823 7.394359 GGCTTAGCTGGAATAATATGATTGGAA 59.606 37.037 3.59 0.00 0.00 3.53
804 824 6.886459 GGCTTAGCTGGAATAATATGATTGGA 59.114 38.462 3.59 0.00 0.00 3.53
805 825 6.660521 TGGCTTAGCTGGAATAATATGATTGG 59.339 38.462 3.59 0.00 0.00 3.16
806 826 7.362401 GGTGGCTTAGCTGGAATAATATGATTG 60.362 40.741 3.59 0.00 0.00 2.67
807 827 6.660949 GGTGGCTTAGCTGGAATAATATGATT 59.339 38.462 3.59 0.00 0.00 2.57
808 828 6.183347 GGTGGCTTAGCTGGAATAATATGAT 58.817 40.000 3.59 0.00 0.00 2.45
809 829 5.514834 GGGTGGCTTAGCTGGAATAATATGA 60.515 44.000 3.59 0.00 0.00 2.15
810 830 4.702131 GGGTGGCTTAGCTGGAATAATATG 59.298 45.833 3.59 0.00 0.00 1.78
811 831 4.263949 GGGGTGGCTTAGCTGGAATAATAT 60.264 45.833 3.59 0.00 0.00 1.28
812 832 3.073946 GGGGTGGCTTAGCTGGAATAATA 59.926 47.826 3.59 0.00 0.00 0.98
813 833 2.158460 GGGGTGGCTTAGCTGGAATAAT 60.158 50.000 3.59 0.00 0.00 1.28
814 834 1.214424 GGGGTGGCTTAGCTGGAATAA 59.786 52.381 3.59 0.00 0.00 1.40
815 835 0.843984 GGGGTGGCTTAGCTGGAATA 59.156 55.000 3.59 0.00 0.00 1.75
816 836 1.615262 GGGGTGGCTTAGCTGGAAT 59.385 57.895 3.59 0.00 0.00 3.01
817 837 2.966732 CGGGGTGGCTTAGCTGGAA 61.967 63.158 3.59 0.00 0.00 3.53
818 838 3.399181 CGGGGTGGCTTAGCTGGA 61.399 66.667 3.59 0.00 0.00 3.86
819 839 3.717294 ACGGGGTGGCTTAGCTGG 61.717 66.667 3.59 0.00 0.00 4.85
820 840 2.436646 CACGGGGTGGCTTAGCTG 60.437 66.667 3.59 0.00 0.00 4.24
821 841 2.221299 TTCACGGGGTGGCTTAGCT 61.221 57.895 3.59 0.00 33.87 3.32
822 842 2.038837 GTTCACGGGGTGGCTTAGC 61.039 63.158 0.00 0.00 33.87 3.09
823 843 0.673644 CTGTTCACGGGGTGGCTTAG 60.674 60.000 0.00 0.00 33.87 2.18
824 844 1.373435 CTGTTCACGGGGTGGCTTA 59.627 57.895 0.00 0.00 33.87 3.09
825 845 1.412453 TACTGTTCACGGGGTGGCTT 61.412 55.000 0.00 0.00 33.87 4.35
826 846 1.412453 TTACTGTTCACGGGGTGGCT 61.412 55.000 0.00 0.00 33.87 4.75
827 847 0.535553 TTTACTGTTCACGGGGTGGC 60.536 55.000 0.00 0.00 33.87 5.01
828 848 1.877443 CTTTTACTGTTCACGGGGTGG 59.123 52.381 0.00 0.00 33.87 4.61
829 849 2.567985 ACTTTTACTGTTCACGGGGTG 58.432 47.619 0.00 0.00 34.45 4.61
830 850 3.286329 AACTTTTACTGTTCACGGGGT 57.714 42.857 0.00 0.00 0.00 4.95
831 851 4.379082 GCATAACTTTTACTGTTCACGGGG 60.379 45.833 0.00 0.00 0.00 5.73
832 852 4.379082 GGCATAACTTTTACTGTTCACGGG 60.379 45.833 0.00 0.00 0.00 5.28
833 853 4.379082 GGGCATAACTTTTACTGTTCACGG 60.379 45.833 0.00 0.00 0.00 4.94
834 854 4.668177 CGGGCATAACTTTTACTGTTCACG 60.668 45.833 0.00 0.00 0.00 4.35
835 855 4.214758 ACGGGCATAACTTTTACTGTTCAC 59.785 41.667 0.00 0.00 0.00 3.18
836 856 4.214545 CACGGGCATAACTTTTACTGTTCA 59.785 41.667 0.00 0.00 0.00 3.18
837 857 4.719040 CACGGGCATAACTTTTACTGTTC 58.281 43.478 0.00 0.00 0.00 3.18
838 858 3.057806 GCACGGGCATAACTTTTACTGTT 60.058 43.478 3.77 0.00 40.72 3.16
839 859 2.486592 GCACGGGCATAACTTTTACTGT 59.513 45.455 3.77 0.00 40.72 3.55
840 860 2.475519 CGCACGGGCATAACTTTTACTG 60.476 50.000 11.77 0.00 41.24 2.74
841 861 1.735571 CGCACGGGCATAACTTTTACT 59.264 47.619 11.77 0.00 41.24 2.24
842 862 1.465777 ACGCACGGGCATAACTTTTAC 59.534 47.619 11.77 0.00 41.24 2.01
843 863 1.465387 CACGCACGGGCATAACTTTTA 59.535 47.619 11.77 0.00 41.24 1.52
844 864 0.239879 CACGCACGGGCATAACTTTT 59.760 50.000 11.77 0.00 41.24 2.27
845 865 0.887387 ACACGCACGGGCATAACTTT 60.887 50.000 11.77 0.00 41.24 2.66
846 866 0.037139 TACACGCACGGGCATAACTT 60.037 50.000 11.77 0.00 41.24 2.66
847 867 0.459585 CTACACGCACGGGCATAACT 60.460 55.000 11.77 0.00 41.24 2.24
848 868 2.003672 CTACACGCACGGGCATAAC 58.996 57.895 11.77 0.00 41.24 1.89
849 869 1.812093 GCTACACGCACGGGCATAA 60.812 57.895 11.77 0.00 41.24 1.90
850 870 2.202824 GCTACACGCACGGGCATA 60.203 61.111 11.77 0.00 41.24 3.14
851 871 4.386951 TGCTACACGCACGGGCAT 62.387 61.111 11.77 0.00 45.47 4.40
859 879 1.362406 GAGGGAGCTTTGCTACACGC 61.362 60.000 4.08 0.00 42.18 5.34
860 880 0.247736 AGAGGGAGCTTTGCTACACG 59.752 55.000 4.08 0.00 42.18 4.49
861 881 1.731720 CAGAGGGAGCTTTGCTACAC 58.268 55.000 4.08 0.00 42.18 2.90
862 882 0.036010 GCAGAGGGAGCTTTGCTACA 60.036 55.000 4.08 0.00 42.18 2.74
863 883 0.746204 GGCAGAGGGAGCTTTGCTAC 60.746 60.000 0.00 0.00 39.88 3.58
864 884 1.604378 GGCAGAGGGAGCTTTGCTA 59.396 57.895 0.00 0.00 39.88 3.49
865 885 2.354343 GGCAGAGGGAGCTTTGCT 59.646 61.111 0.00 0.00 43.88 3.91
866 886 2.753446 GGGCAGAGGGAGCTTTGC 60.753 66.667 0.00 0.00 35.87 3.68
867 887 2.044551 GGGGCAGAGGGAGCTTTG 60.045 66.667 0.00 0.00 0.00 2.77
868 888 3.342477 GGGGGCAGAGGGAGCTTT 61.342 66.667 0.00 0.00 0.00 3.51
1279 1302 3.327757 ACAGGAACCAGCAGAACATCTAA 59.672 43.478 0.00 0.00 0.00 2.10
1300 1323 0.249398 ATCACGTAGCCACTGGGAAC 59.751 55.000 0.00 0.00 35.59 3.62
1352 1375 1.053264 TTTGTTGGGCAAGGTGGCAT 61.053 50.000 4.09 0.00 45.76 4.40
1353 1376 1.053264 ATTTGTTGGGCAAGGTGGCA 61.053 50.000 4.09 0.00 45.76 4.92
1397 1421 7.440523 ACAAATCAACAGGTATCTTCAGAAC 57.559 36.000 0.00 0.00 0.00 3.01
1409 1433 6.372659 AGCACTTAGTCATACAAATCAACAGG 59.627 38.462 0.00 0.00 0.00 4.00
1420 1444 9.151471 TCTCAAATTTGTAGCACTTAGTCATAC 57.849 33.333 17.47 0.00 0.00 2.39
1443 1467 2.744202 CCACCAGCAGTAACAACATCTC 59.256 50.000 0.00 0.00 0.00 2.75
1455 1479 3.302347 GACCTCGACCCACCAGCAG 62.302 68.421 0.00 0.00 0.00 4.24
1457 1481 4.436998 CGACCTCGACCCACCAGC 62.437 72.222 0.00 0.00 43.02 4.85
1458 1482 3.760035 CCGACCTCGACCCACCAG 61.760 72.222 0.00 0.00 43.02 4.00
1459 1483 3.595428 ATCCGACCTCGACCCACCA 62.595 63.158 0.00 0.00 43.02 4.17
1460 1484 2.356780 AATCCGACCTCGACCCACC 61.357 63.158 0.00 0.00 43.02 4.61
1492 1542 5.182001 AGAGCTAGGCATACAACAAAACAAG 59.818 40.000 0.00 0.00 0.00 3.16
1524 1574 2.531685 CCCCACAAGACCCTCCCA 60.532 66.667 0.00 0.00 0.00 4.37
1558 1609 7.424803 TCATTCCAACATACAACAAAGTTCTG 58.575 34.615 0.00 0.00 0.00 3.02
1605 1657 8.491152 CGAAATAATCCTTTATCAGCTACAGTG 58.509 37.037 0.00 0.00 0.00 3.66
1723 1775 7.450074 TGCTCAAGTGGGAATATACGAATATT 58.550 34.615 0.00 0.00 40.31 1.28
2179 2243 7.984422 ATCTGAAAATATATGTTGCGATGGA 57.016 32.000 0.00 0.00 0.00 3.41
2268 2332 5.524281 TCACTTTACTGCACAACGTTATCAA 59.476 36.000 0.00 0.00 0.00 2.57
2273 2337 4.688511 TTTCACTTTACTGCACAACGTT 57.311 36.364 0.00 0.00 0.00 3.99
2275 2339 4.843147 TGATTTCACTTTACTGCACAACG 58.157 39.130 0.00 0.00 0.00 4.10
2327 2391 4.292186 AGGAAGAAATGCTGCAGTAGAA 57.708 40.909 16.64 0.00 0.00 2.10
2328 2392 3.988976 AGGAAGAAATGCTGCAGTAGA 57.011 42.857 16.64 0.00 0.00 2.59
2329 2393 6.690194 AAATAGGAAGAAATGCTGCAGTAG 57.310 37.500 16.64 0.00 0.00 2.57
2398 2462 8.509690 AGGCGTAAGTTAAAGAAGGAATTTTAC 58.490 33.333 0.00 0.00 41.68 2.01
2434 2498 1.206849 TGATCATACAAGCTGCCGACA 59.793 47.619 0.00 0.00 0.00 4.35
2435 2499 1.863454 CTGATCATACAAGCTGCCGAC 59.137 52.381 0.00 0.00 0.00 4.79
2734 2798 3.011818 CAATCAGAGCCATACACTGCAA 58.988 45.455 0.00 0.00 36.95 4.08
2766 2830 4.262549 CCACAAATTTCCTGGCTTTCATCA 60.263 41.667 0.00 0.00 0.00 3.07
2928 2996 9.304731 CCATCAACATTTCAACCAATACATTAG 57.695 33.333 0.00 0.00 0.00 1.73
3069 3137 3.753815 TGGTCTGTTTCATGCATCAGAA 58.246 40.909 15.24 6.41 38.40 3.02
3084 3152 9.260002 ACAATTTGTAATTAAGCTTTTGGTCTG 57.740 29.630 3.20 0.00 0.00 3.51
3207 3275 6.665248 TCACTTCCAAGAGATATGAAGAGTGA 59.335 38.462 5.22 0.00 38.05 3.41
3276 3345 2.860062 CTGCAGCTAAACAGCATTGAC 58.140 47.619 0.00 0.00 40.37 3.18
3441 3514 5.681437 GCATCTTCTTCCAATGCATGTTCAT 60.681 40.000 0.00 0.00 44.07 2.57
3587 3687 4.088056 TGGGAACGTCCTTCAATAAACA 57.912 40.909 0.00 0.00 36.57 2.83
3690 3790 5.013704 TCCCTCTGTCTAAAAATGTAAGGCA 59.986 40.000 0.00 0.00 0.00 4.75
3772 3872 4.820173 GGGCGGCCCAATATTATTATCTAC 59.180 45.833 32.90 0.00 44.65 2.59
3790 3890 5.288804 CAAATTGTATAAATGGAAGGGCGG 58.711 41.667 0.00 0.00 0.00 6.13
3809 3909 4.847990 ATTCATGGCAAATGGACCAAAT 57.152 36.364 0.00 0.00 39.96 2.32
3815 3915 4.092279 TGGTGTTATTCATGGCAAATGGA 58.908 39.130 0.00 0.00 0.00 3.41
3877 3977 6.373779 GTGAACACATTAACAACCATCTCAG 58.626 40.000 0.00 0.00 0.00 3.35
3890 3990 5.055265 TGAAAGAAGGGGTGAACACATTA 57.945 39.130 7.25 0.00 0.00 1.90
3926 4026 3.512724 CCTTCCATTTCTTGCCAATGTCT 59.487 43.478 0.00 0.00 30.73 3.41
4043 4149 2.287373 GTCAGCTGCAGACATAGAATGC 59.713 50.000 20.43 0.00 40.40 3.56
4078 4184 3.340928 TGAGTCATCCTGCATTTGAGTG 58.659 45.455 5.92 0.00 0.00 3.51
4135 4241 1.674322 ATGTGTGCGGCCTTACACC 60.674 57.895 26.69 15.07 44.94 4.16
4145 4251 1.201998 GCAGTCTTCATCATGTGTGCG 60.202 52.381 0.00 0.00 0.00 5.34
4163 4269 1.741525 GCCACTTTTCCAAGCTGCA 59.258 52.632 1.02 0.00 32.54 4.41
4197 4303 0.173481 CTGAGGCGGTTCGAATCTCA 59.827 55.000 6.88 13.22 32.69 3.27
4302 4411 5.656416 TCAAGGGATATTGCGAGGAAAATTT 59.344 36.000 0.00 0.00 0.00 1.82
4336 4445 2.038975 CGGGGTTCCTCCTCTGGA 59.961 66.667 0.00 0.00 33.68 3.86
4353 4462 2.358737 CCACTTCCCACACGAGGC 60.359 66.667 0.00 0.00 0.00 4.70
4419 4529 3.247442 TGTGGACTAAACAGCGAATACG 58.753 45.455 0.00 0.00 42.93 3.06
4425 4535 3.554524 CACAAATGTGGACTAAACAGCG 58.445 45.455 5.63 0.00 42.10 5.18
4523 4636 3.684788 ACGTGGAAACAGATTATGCAGAC 59.315 43.478 0.00 0.00 44.46 3.51
4524 4637 3.684305 CACGTGGAAACAGATTATGCAGA 59.316 43.478 7.95 0.00 44.46 4.26
4525 4638 3.728864 GCACGTGGAAACAGATTATGCAG 60.729 47.826 18.88 0.00 44.46 4.41
4526 4639 2.161410 GCACGTGGAAACAGATTATGCA 59.839 45.455 18.88 0.00 44.46 3.96
4543 4665 1.394917 CGAGGAAAGGAAGATTGCACG 59.605 52.381 0.00 0.00 0.00 5.34
4556 4678 3.985127 TGATAGGAGGGTAACGAGGAAA 58.015 45.455 0.00 0.00 37.60 3.13
4568 4690 9.902684 ATCTAAGCATGAAATATTGATAGGAGG 57.097 33.333 0.00 0.00 0.00 4.30
4648 4770 3.686726 CAGCCACATCTTACTTCCACTTC 59.313 47.826 0.00 0.00 0.00 3.01
4720 4842 8.484641 TCAACAATATTCAAAGACTAGAGCTG 57.515 34.615 0.00 0.00 0.00 4.24
4738 4862 3.815856 TGTGCAACCACATTCAACAAT 57.184 38.095 0.00 0.00 46.51 2.71
4759 4883 9.859152 AAAATTCTAGCAATCCTAGCTAATTCT 57.141 29.630 0.00 0.00 43.39 2.40
4795 4919 3.725634 AGGAGCATTACCTAACCACTCT 58.274 45.455 0.00 0.00 35.84 3.24
4854 4981 7.652507 GGCACTCTTAAGATAGTACCATTGTAC 59.347 40.741 5.44 0.00 46.36 2.90
4855 4982 7.343574 TGGCACTCTTAAGATAGTACCATTGTA 59.656 37.037 11.15 0.00 34.81 2.41
4856 4983 6.156256 TGGCACTCTTAAGATAGTACCATTGT 59.844 38.462 11.15 0.00 34.81 2.71
4857 4984 6.480320 GTGGCACTCTTAAGATAGTACCATTG 59.520 42.308 16.06 1.11 40.43 2.82
4858 4985 6.583562 GTGGCACTCTTAAGATAGTACCATT 58.416 40.000 16.06 0.00 40.43 3.16
4859 4986 5.221263 CGTGGCACTCTTAAGATAGTACCAT 60.221 44.000 16.72 0.00 40.43 3.55
4860 4987 4.097437 CGTGGCACTCTTAAGATAGTACCA 59.903 45.833 16.72 11.15 36.91 3.25
4861 4988 4.097589 ACGTGGCACTCTTAAGATAGTACC 59.902 45.833 16.72 6.42 30.88 3.34
4862 4989 5.246145 ACGTGGCACTCTTAAGATAGTAC 57.754 43.478 16.72 0.00 0.00 2.73
4863 4990 5.530171 CCTACGTGGCACTCTTAAGATAGTA 59.470 44.000 16.72 5.41 0.00 1.82
4864 4991 4.338682 CCTACGTGGCACTCTTAAGATAGT 59.661 45.833 16.72 4.47 0.00 2.12
4865 4992 4.579340 TCCTACGTGGCACTCTTAAGATAG 59.421 45.833 16.72 2.87 35.26 2.08
4866 4993 4.529897 TCCTACGTGGCACTCTTAAGATA 58.470 43.478 16.72 0.00 35.26 1.98
4867 4994 3.362706 TCCTACGTGGCACTCTTAAGAT 58.637 45.455 16.72 0.00 35.26 2.40
4868 4995 2.799017 TCCTACGTGGCACTCTTAAGA 58.201 47.619 16.72 4.81 35.26 2.10
4869 4996 3.802948 ATCCTACGTGGCACTCTTAAG 57.197 47.619 16.72 0.00 35.26 1.85
4870 4997 6.071560 CCATATATCCTACGTGGCACTCTTAA 60.072 42.308 16.72 0.00 35.26 1.85
4871 4998 5.417894 CCATATATCCTACGTGGCACTCTTA 59.582 44.000 16.72 3.36 35.26 2.10
4872 4999 4.220821 CCATATATCCTACGTGGCACTCTT 59.779 45.833 16.72 2.24 35.26 2.85
4873 5000 3.764434 CCATATATCCTACGTGGCACTCT 59.236 47.826 16.72 2.90 35.26 3.24
4874 5001 3.510360 ACCATATATCCTACGTGGCACTC 59.490 47.826 16.72 0.00 33.24 3.51
4875 5002 3.507411 ACCATATATCCTACGTGGCACT 58.493 45.455 16.72 5.47 33.24 4.40
4876 5003 3.955650 ACCATATATCCTACGTGGCAC 57.044 47.619 7.79 7.79 33.24 5.01
4877 5004 4.464951 CCTTACCATATATCCTACGTGGCA 59.535 45.833 0.00 0.00 33.24 4.92
4878 5005 4.465305 ACCTTACCATATATCCTACGTGGC 59.535 45.833 0.00 0.00 33.24 5.01
4879 5006 5.105473 CCACCTTACCATATATCCTACGTGG 60.105 48.000 0.00 0.00 36.06 4.94
4880 5007 5.713389 TCCACCTTACCATATATCCTACGTG 59.287 44.000 0.00 0.00 0.00 4.49
4881 5008 5.895807 TCCACCTTACCATATATCCTACGT 58.104 41.667 0.00 0.00 0.00 3.57
4882 5009 5.360144 CCTCCACCTTACCATATATCCTACG 59.640 48.000 0.00 0.00 0.00 3.51
4883 5010 6.500336 TCCTCCACCTTACCATATATCCTAC 58.500 44.000 0.00 0.00 0.00 3.18
4884 5011 6.511445 TCTCCTCCACCTTACCATATATCCTA 59.489 42.308 0.00 0.00 0.00 2.94
4885 5012 5.318889 TCTCCTCCACCTTACCATATATCCT 59.681 44.000 0.00 0.00 0.00 3.24
4886 5013 5.590818 TCTCCTCCACCTTACCATATATCC 58.409 45.833 0.00 0.00 0.00 2.59
4887 5014 6.494952 TCTCTCCTCCACCTTACCATATATC 58.505 44.000 0.00 0.00 0.00 1.63
4888 5015 6.278239 TCTCTCTCCTCCACCTTACCATATAT 59.722 42.308 0.00 0.00 0.00 0.86
4889 5016 5.615692 TCTCTCTCCTCCACCTTACCATATA 59.384 44.000 0.00 0.00 0.00 0.86
4890 5017 4.420552 TCTCTCTCCTCCACCTTACCATAT 59.579 45.833 0.00 0.00 0.00 1.78
4891 5018 3.792114 TCTCTCTCCTCCACCTTACCATA 59.208 47.826 0.00 0.00 0.00 2.74
4892 5019 2.587777 TCTCTCTCCTCCACCTTACCAT 59.412 50.000 0.00 0.00 0.00 3.55
4893 5020 2.000803 TCTCTCTCCTCCACCTTACCA 58.999 52.381 0.00 0.00 0.00 3.25
4894 5021 2.761767 GTTCTCTCTCCTCCACCTTACC 59.238 54.545 0.00 0.00 0.00 2.85
4895 5022 3.697542 GAGTTCTCTCTCCTCCACCTTAC 59.302 52.174 0.00 0.00 37.68 2.34
4896 5023 3.333980 TGAGTTCTCTCTCCTCCACCTTA 59.666 47.826 1.53 0.00 40.98 2.69
4897 5024 2.110899 TGAGTTCTCTCTCCTCCACCTT 59.889 50.000 1.53 0.00 40.98 3.50
4898 5025 1.713647 TGAGTTCTCTCTCCTCCACCT 59.286 52.381 1.53 0.00 40.98 4.00
4899 5026 2.223803 TGAGTTCTCTCTCCTCCACC 57.776 55.000 1.53 0.00 40.98 4.61
4900 5027 5.197451 TCTTATGAGTTCTCTCTCCTCCAC 58.803 45.833 1.53 0.00 40.98 4.02
4901 5028 5.458451 TCTTATGAGTTCTCTCTCCTCCA 57.542 43.478 1.53 0.00 40.98 3.86
4902 5029 6.783708 TTTCTTATGAGTTCTCTCTCCTCC 57.216 41.667 1.53 0.00 40.98 4.30
4903 5030 7.973944 GTCTTTTCTTATGAGTTCTCTCTCCTC 59.026 40.741 1.53 0.00 40.98 3.71
4904 5031 7.673926 AGTCTTTTCTTATGAGTTCTCTCTCCT 59.326 37.037 1.53 0.00 40.98 3.69
4905 5032 7.836842 AGTCTTTTCTTATGAGTTCTCTCTCC 58.163 38.462 1.53 0.00 40.98 3.71
4906 5033 9.139174 CAAGTCTTTTCTTATGAGTTCTCTCTC 57.861 37.037 1.53 0.00 40.98 3.20
4907 5034 8.646900 ACAAGTCTTTTCTTATGAGTTCTCTCT 58.353 33.333 1.53 0.00 40.98 3.10
4908 5035 8.825667 ACAAGTCTTTTCTTATGAGTTCTCTC 57.174 34.615 1.53 0.00 40.79 3.20
4909 5036 8.646900 AGACAAGTCTTTTCTTATGAGTTCTCT 58.353 33.333 0.00 0.00 36.31 3.10
4910 5037 8.825667 AGACAAGTCTTTTCTTATGAGTTCTC 57.174 34.615 0.00 0.00 36.31 2.87
4958 5085 8.306038 AGACATATTGTGCTAAGAGATCATCTC 58.694 37.037 6.55 6.55 43.70 2.75
4959 5086 8.192743 AGACATATTGTGCTAAGAGATCATCT 57.807 34.615 0.00 0.00 41.27 2.90
4960 5087 8.087136 TGAGACATATTGTGCTAAGAGATCATC 58.913 37.037 0.00 0.00 0.00 2.92
4961 5088 7.871973 GTGAGACATATTGTGCTAAGAGATCAT 59.128 37.037 0.00 0.00 0.00 2.45
4962 5089 7.205992 GTGAGACATATTGTGCTAAGAGATCA 58.794 38.462 0.00 0.00 0.00 2.92
4963 5090 6.644592 GGTGAGACATATTGTGCTAAGAGATC 59.355 42.308 0.00 0.00 0.00 2.75
4964 5091 6.098838 TGGTGAGACATATTGTGCTAAGAGAT 59.901 38.462 0.00 0.00 0.00 2.75
4965 5092 5.422012 TGGTGAGACATATTGTGCTAAGAGA 59.578 40.000 0.00 0.00 0.00 3.10
4966 5093 5.664457 TGGTGAGACATATTGTGCTAAGAG 58.336 41.667 0.00 0.00 0.00 2.85
4967 5094 5.675684 TGGTGAGACATATTGTGCTAAGA 57.324 39.130 0.00 0.00 0.00 2.10
4968 5095 5.819379 ACATGGTGAGACATATTGTGCTAAG 59.181 40.000 0.00 0.00 0.00 2.18
4969 5096 5.744171 ACATGGTGAGACATATTGTGCTAA 58.256 37.500 0.00 0.00 0.00 3.09
4970 5097 5.357742 ACATGGTGAGACATATTGTGCTA 57.642 39.130 0.00 0.00 0.00 3.49
4971 5098 4.226427 ACATGGTGAGACATATTGTGCT 57.774 40.909 0.00 0.00 0.00 4.40
4972 5099 4.970662 AACATGGTGAGACATATTGTGC 57.029 40.909 0.00 0.00 0.00 4.57
4973 5100 7.970061 CCTAAAAACATGGTGAGACATATTGTG 59.030 37.037 0.00 0.00 0.00 3.33
4974 5101 7.888021 TCCTAAAAACATGGTGAGACATATTGT 59.112 33.333 0.00 0.00 0.00 2.71
4975 5102 8.279970 TCCTAAAAACATGGTGAGACATATTG 57.720 34.615 0.00 0.00 0.00 1.90
4976 5103 8.877864 TTCCTAAAAACATGGTGAGACATATT 57.122 30.769 0.00 0.00 0.00 1.28
4978 5105 9.967451 TTATTCCTAAAAACATGGTGAGACATA 57.033 29.630 0.00 0.00 0.00 2.29
4979 5106 8.739972 GTTATTCCTAAAAACATGGTGAGACAT 58.260 33.333 0.00 0.00 0.00 3.06
4980 5107 7.942341 AGTTATTCCTAAAAACATGGTGAGACA 59.058 33.333 0.00 0.00 0.00 3.41
4981 5108 8.336801 AGTTATTCCTAAAAACATGGTGAGAC 57.663 34.615 0.00 0.00 0.00 3.36
5009 5136 9.988815 GTCATCTCTTAGCCTTATCTTCAATAA 57.011 33.333 0.00 0.00 0.00 1.40
5010 5137 8.589338 GGTCATCTCTTAGCCTTATCTTCAATA 58.411 37.037 0.00 0.00 0.00 1.90
5011 5138 7.449247 GGTCATCTCTTAGCCTTATCTTCAAT 58.551 38.462 0.00 0.00 0.00 2.57
5012 5139 6.183361 GGGTCATCTCTTAGCCTTATCTTCAA 60.183 42.308 0.00 0.00 0.00 2.69
5013 5140 5.305644 GGGTCATCTCTTAGCCTTATCTTCA 59.694 44.000 0.00 0.00 0.00 3.02
5014 5141 5.305644 TGGGTCATCTCTTAGCCTTATCTTC 59.694 44.000 0.00 0.00 34.30 2.87
5015 5142 5.219739 TGGGTCATCTCTTAGCCTTATCTT 58.780 41.667 0.00 0.00 34.30 2.40
5016 5143 4.820775 TGGGTCATCTCTTAGCCTTATCT 58.179 43.478 0.00 0.00 34.30 1.98
5017 5144 5.753721 ATGGGTCATCTCTTAGCCTTATC 57.246 43.478 0.00 0.00 34.30 1.75
5018 5145 5.370880 ACAATGGGTCATCTCTTAGCCTTAT 59.629 40.000 0.00 0.00 34.30 1.73
5019 5146 4.721776 ACAATGGGTCATCTCTTAGCCTTA 59.278 41.667 0.00 0.00 34.30 2.69
5020 5147 3.525199 ACAATGGGTCATCTCTTAGCCTT 59.475 43.478 0.00 0.00 34.30 4.35
5021 5148 3.118531 ACAATGGGTCATCTCTTAGCCT 58.881 45.455 0.00 0.00 34.30 4.58
5022 5149 3.567478 ACAATGGGTCATCTCTTAGCC 57.433 47.619 0.00 0.00 0.00 3.93
5023 5150 5.163405 TGTCTACAATGGGTCATCTCTTAGC 60.163 44.000 0.00 0.00 0.00 3.09
5024 5151 6.471233 TGTCTACAATGGGTCATCTCTTAG 57.529 41.667 0.00 0.00 0.00 2.18
5025 5152 6.867519 TTGTCTACAATGGGTCATCTCTTA 57.132 37.500 0.00 0.00 0.00 2.10
5026 5153 5.762179 TTGTCTACAATGGGTCATCTCTT 57.238 39.130 0.00 0.00 0.00 2.85
5027 5154 5.762179 TTTGTCTACAATGGGTCATCTCT 57.238 39.130 0.00 0.00 35.55 3.10
5028 5155 7.396540 AAATTTGTCTACAATGGGTCATCTC 57.603 36.000 0.00 0.00 35.55 2.75
5029 5156 7.781324 AAAATTTGTCTACAATGGGTCATCT 57.219 32.000 0.00 0.00 35.55 2.90
5090 5217 9.770097 CATGTACAATGGTTGATAAGATAGTCT 57.230 33.333 0.00 0.00 0.00 3.24
5091 5218 8.499162 GCATGTACAATGGTTGATAAGATAGTC 58.501 37.037 0.00 0.00 0.00 2.59
5092 5219 7.445402 GGCATGTACAATGGTTGATAAGATAGT 59.555 37.037 0.00 0.00 0.00 2.12
5093 5220 7.094634 GGGCATGTACAATGGTTGATAAGATAG 60.095 40.741 0.00 0.00 0.00 2.08
5094 5221 6.714810 GGGCATGTACAATGGTTGATAAGATA 59.285 38.462 0.00 0.00 0.00 1.98
5095 5222 5.536161 GGGCATGTACAATGGTTGATAAGAT 59.464 40.000 0.00 0.00 0.00 2.40
5096 5223 4.887071 GGGCATGTACAATGGTTGATAAGA 59.113 41.667 0.00 0.00 0.00 2.10
5097 5224 4.889409 AGGGCATGTACAATGGTTGATAAG 59.111 41.667 0.00 0.00 0.00 1.73
5098 5225 4.865905 AGGGCATGTACAATGGTTGATAA 58.134 39.130 0.00 0.00 0.00 1.75
5099 5226 4.518278 AGGGCATGTACAATGGTTGATA 57.482 40.909 0.00 0.00 0.00 2.15
5100 5227 3.386932 AGGGCATGTACAATGGTTGAT 57.613 42.857 0.00 0.00 0.00 2.57
5101 5228 2.897271 AGGGCATGTACAATGGTTGA 57.103 45.000 0.00 0.00 0.00 3.18
5102 5229 3.181487 GCTTAGGGCATGTACAATGGTTG 60.181 47.826 0.00 0.00 41.35 3.77
5103 5230 3.023832 GCTTAGGGCATGTACAATGGTT 58.976 45.455 0.00 0.00 41.35 3.67
5104 5231 2.242196 AGCTTAGGGCATGTACAATGGT 59.758 45.455 0.00 0.00 44.79 3.55
5105 5232 2.936202 AGCTTAGGGCATGTACAATGG 58.064 47.619 0.00 0.00 44.79 3.16
5106 5233 3.489738 GCAAGCTTAGGGCATGTACAATG 60.490 47.826 0.00 0.12 44.79 2.82
5107 5234 2.689983 GCAAGCTTAGGGCATGTACAAT 59.310 45.455 0.00 0.00 44.79 2.71
5108 5235 2.091541 GCAAGCTTAGGGCATGTACAA 58.908 47.619 0.00 0.00 44.79 2.41
5109 5236 1.281867 AGCAAGCTTAGGGCATGTACA 59.718 47.619 9.64 0.00 44.79 2.90
5110 5237 1.943340 GAGCAAGCTTAGGGCATGTAC 59.057 52.381 9.64 0.00 44.79 2.90
5111 5238 1.559219 TGAGCAAGCTTAGGGCATGTA 59.441 47.619 9.64 0.00 44.79 2.29
5112 5239 0.329261 TGAGCAAGCTTAGGGCATGT 59.671 50.000 9.64 0.00 44.79 3.21
5113 5240 0.737219 GTGAGCAAGCTTAGGGCATG 59.263 55.000 9.64 0.00 44.79 4.06
5114 5241 0.394899 GGTGAGCAAGCTTAGGGCAT 60.395 55.000 9.64 0.00 44.79 4.40
5115 5242 1.002134 GGTGAGCAAGCTTAGGGCA 60.002 57.895 9.64 0.00 44.79 5.36
5116 5243 0.609131 TTGGTGAGCAAGCTTAGGGC 60.609 55.000 0.00 0.00 42.19 5.19
5117 5244 1.747355 CATTGGTGAGCAAGCTTAGGG 59.253 52.381 0.00 0.00 0.00 3.53
5118 5245 2.715046 TCATTGGTGAGCAAGCTTAGG 58.285 47.619 0.00 0.00 0.00 2.69
5119 5246 4.978083 ATTCATTGGTGAGCAAGCTTAG 57.022 40.909 0.00 0.00 35.39 2.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.