Multiple sequence alignment - TraesCS1B01G166500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1B01G166500 chr1B 100.000 3173 0 0 1 3173 292415518 292412346 0.000000e+00 5860.0
1 TraesCS1B01G166500 chr1B 99.371 2227 13 1 947 3173 292343085 292340860 0.000000e+00 4034.0
2 TraesCS1B01G166500 chr1B 97.407 270 5 2 664 931 292343340 292343071 2.880000e-125 459.0
3 TraesCS1B01G166500 chr1B 98.684 76 1 0 613 688 292343415 292343340 5.520000e-28 135.0
4 TraesCS1B01G166500 chr1B 91.176 68 1 1 2151 2213 292341829 292341762 1.570000e-13 87.9
5 TraesCS1B01G166500 chr1B 91.176 68 1 1 2203 2270 292341881 292341819 1.570000e-13 87.9
6 TraesCS1B01G166500 chr1B 91.176 68 1 1 2151 2213 292413316 292413249 1.570000e-13 87.9
7 TraesCS1B01G166500 chr1B 91.176 68 1 1 2203 2270 292413368 292413306 1.570000e-13 87.9
8 TraesCS1B01G166500 chr5D 86.728 437 27 19 2763 3173 398519662 398519231 1.040000e-124 457.0
9 TraesCS1B01G166500 chr5D 87.850 107 6 3 2764 2863 396448793 396448687 5.560000e-23 119.0
10 TraesCS1B01G166500 chr5D 91.176 68 5 1 2330 2397 396448874 396448808 1.210000e-14 91.6
11 TraesCS1B01G166500 chr7D 86.977 430 24 15 2764 3173 631437683 631438100 3.730000e-124 455.0
12 TraesCS1B01G166500 chr7D 77.053 414 81 7 1643 2052 511933598 511934001 3.180000e-55 226.0
13 TraesCS1B01G166500 chr7D 97.436 39 1 0 2341 2379 127421859 127421897 2.040000e-07 67.6
14 TraesCS1B01G166500 chr7D 97.297 37 1 0 2338 2374 16208019 16207983 2.640000e-06 63.9
15 TraesCS1B01G166500 chr4A 86.547 446 21 12 2763 3173 668932422 668931981 3.730000e-124 455.0
16 TraesCS1B01G166500 chr4A 94.915 59 3 0 2341 2399 668932492 668932434 3.370000e-15 93.5
17 TraesCS1B01G166500 chrUn 86.079 431 28 19 2764 3173 471147703 471147284 4.860000e-118 435.0
18 TraesCS1B01G166500 chrUn 93.728 287 18 0 2475 2761 51215070 51214784 6.290000e-117 431.0
19 TraesCS1B01G166500 chrUn 87.931 290 35 0 2472 2761 259363303 259363592 3.030000e-90 342.0
20 TraesCS1B01G166500 chrUn 87.931 290 35 0 2472 2761 259365667 259365956 3.030000e-90 342.0
21 TraesCS1B01G166500 chrUn 91.803 61 3 2 2410 2470 51215157 51215099 2.030000e-12 84.2
22 TraesCS1B01G166500 chr1A 86.079 431 28 19 2764 3173 41346299 41345880 4.860000e-118 435.0
23 TraesCS1B01G166500 chr1A 85.383 431 29 19 2764 3173 41339515 41339098 1.760000e-112 416.0
24 TraesCS1B01G166500 chr1A 84.978 446 26 17 2763 3173 592657225 592656786 6.330000e-112 414.0
25 TraesCS1B01G166500 chr4B 84.889 450 25 15 2763 3173 480832961 480832516 6.330000e-112 414.0
26 TraesCS1B01G166500 chr4B 89.825 285 29 0 2475 2759 660485280 660484996 1.800000e-97 366.0
27 TraesCS1B01G166500 chr4B 91.304 69 6 0 2338 2406 480833034 480832966 9.370000e-16 95.3
28 TraesCS1B01G166500 chr7B 92.334 287 22 0 2475 2761 68837381 68837095 2.950000e-110 409.0
29 TraesCS1B01G166500 chr7B 74.611 965 200 24 1121 2058 541230599 541229653 1.790000e-102 383.0
30 TraesCS1B01G166500 chr7B 88.652 141 9 5 2760 2893 732625267 732625407 7.040000e-37 165.0
31 TraesCS1B01G166500 chr7B 100.000 39 0 0 2341 2379 89209574 89209612 4.390000e-09 73.1
32 TraesCS1B01G166500 chr2D 92.069 290 23 0 2472 2761 178289894 178290183 2.950000e-110 409.0
33 TraesCS1B01G166500 chr2D 91.319 288 24 1 2475 2761 512484605 512484318 2.970000e-105 392.0
34 TraesCS1B01G166500 chr2D 97.826 46 0 1 2417 2462 512484685 512484641 9.440000e-11 78.7
35 TraesCS1B01G166500 chr3D 91.986 287 23 0 2475 2761 430354748 430354462 1.370000e-108 403.0
36 TraesCS1B01G166500 chr3D 100.000 37 0 0 2338 2374 584678903 584678939 5.680000e-08 69.4
37 TraesCS1B01G166500 chr3B 95.492 244 11 0 177 420 67911980 67911737 1.070000e-104 390.0
38 TraesCS1B01G166500 chr3B 80.796 427 59 17 2760 3173 755983458 755983874 2.380000e-81 313.0
39 TraesCS1B01G166500 chr3B 95.187 187 9 0 1 187 67912315 67912129 2.390000e-76 296.0
40 TraesCS1B01G166500 chr3B 94.915 118 6 0 421 538 67911690 67911573 5.400000e-43 185.0
41 TraesCS1B01G166500 chr3B 96.053 76 3 0 540 615 67905846 67905771 1.200000e-24 124.0
42 TraesCS1B01G166500 chr5A 83.747 443 33 19 2763 3173 666823190 666822755 1.790000e-102 383.0
43 TraesCS1B01G166500 chr6B 79.953 429 57 18 2760 3169 643609701 643610119 4.000000e-74 289.0
44 TraesCS1B01G166500 chr6B 93.220 59 4 0 2338 2396 643609631 643609689 1.570000e-13 87.9
45 TraesCS1B01G166500 chr6A 84.884 86 11 2 23 107 3544797 3544713 5.640000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1B01G166500 chr1B 292412346 292415518 3172 True 2011.933333 5860 94.117333 1 3173 3 chr1B.!!$R2 3172
1 TraesCS1B01G166500 chr1B 292340860 292343415 2555 True 960.760000 4034 95.562800 613 3173 5 chr1B.!!$R1 2560
2 TraesCS1B01G166500 chr4A 668931981 668932492 511 True 274.250000 455 90.731000 2341 3173 2 chr4A.!!$R1 832
3 TraesCS1B01G166500 chrUn 259363303 259365956 2653 False 342.000000 342 87.931000 2472 2761 2 chrUn.!!$F1 289
4 TraesCS1B01G166500 chr4B 480832516 480833034 518 True 254.650000 414 88.096500 2338 3173 2 chr4B.!!$R2 835
5 TraesCS1B01G166500 chr7B 541229653 541230599 946 True 383.000000 383 74.611000 1121 2058 1 chr7B.!!$R2 937
6 TraesCS1B01G166500 chr3B 67911573 67912315 742 True 290.333333 390 95.198000 1 538 3 chr3B.!!$R2 537

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
255 256 0.027194 CCGTTTGCGCTCTCATGATG 59.973 55.0 9.73 0.0 36.67 3.07 F
516 517 0.032403 ATCCAACGTGAACGACCGAA 59.968 50.0 10.26 0.0 43.02 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2092 2219 0.390866 ACTCTGCAGCCATGAGTTCG 60.391 55.000 9.47 0.0 37.76 3.95 R
2463 2590 2.794103 CCATGTGTGGTTGATTCCTGA 58.206 47.619 0.00 0.0 40.83 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 1.929806 TTCGTGGACTCCGATGACCG 61.930 60.000 0.00 0.00 33.81 4.79
117 118 3.062466 CGGGTGACTCGCTCCTGA 61.062 66.667 0.00 0.00 38.54 3.86
120 121 1.520342 GGTGACTCGCTCCTGATGC 60.520 63.158 0.00 0.00 0.00 3.91
179 180 4.875713 GGGGCGTGCGGATGGATT 62.876 66.667 0.00 0.00 0.00 3.01
180 181 3.585990 GGGCGTGCGGATGGATTG 61.586 66.667 0.00 0.00 0.00 2.67
181 182 3.585990 GGCGTGCGGATGGATTGG 61.586 66.667 0.00 0.00 0.00 3.16
182 183 4.256090 GCGTGCGGATGGATTGGC 62.256 66.667 0.00 0.00 0.00 4.52
183 184 2.823593 CGTGCGGATGGATTGGCA 60.824 61.111 0.00 0.00 0.00 4.92
184 185 2.188829 CGTGCGGATGGATTGGCAT 61.189 57.895 0.00 0.00 37.77 4.40
185 186 1.361271 GTGCGGATGGATTGGCATG 59.639 57.895 0.00 0.00 37.77 4.06
186 187 1.829096 TGCGGATGGATTGGCATGG 60.829 57.895 0.00 0.00 0.00 3.66
187 188 2.567497 GCGGATGGATTGGCATGGG 61.567 63.158 0.00 0.00 0.00 4.00
188 189 2.567497 CGGATGGATTGGCATGGGC 61.567 63.158 0.00 0.00 40.13 5.36
189 190 2.567497 GGATGGATTGGCATGGGCG 61.567 63.158 0.00 0.00 42.47 6.13
190 191 3.216944 GATGGATTGGCATGGGCGC 62.217 63.158 0.00 0.00 42.47 6.53
208 209 3.717294 CCTGGAGGGGTCGGTTGG 61.717 72.222 0.00 0.00 0.00 3.77
209 210 4.410400 CTGGAGGGGTCGGTTGGC 62.410 72.222 0.00 0.00 0.00 4.52
214 215 4.476752 GGGGTCGGTTGGCGCATA 62.477 66.667 10.83 0.00 0.00 3.14
215 216 3.199891 GGGTCGGTTGGCGCATAC 61.200 66.667 10.83 6.11 0.00 2.39
216 217 3.560278 GGTCGGTTGGCGCATACG 61.560 66.667 10.83 8.30 44.07 3.06
228 229 2.357954 CGCATACGCACTCAAATCTG 57.642 50.000 0.00 0.00 38.40 2.90
229 230 1.660607 CGCATACGCACTCAAATCTGT 59.339 47.619 0.00 0.00 38.40 3.41
230 231 2.857748 CGCATACGCACTCAAATCTGTA 59.142 45.455 0.00 0.00 38.40 2.74
231 232 3.301835 CGCATACGCACTCAAATCTGTAC 60.302 47.826 0.00 0.00 38.40 2.90
232 233 3.301835 GCATACGCACTCAAATCTGTACG 60.302 47.826 0.00 0.00 38.36 3.67
233 234 2.433868 ACGCACTCAAATCTGTACGT 57.566 45.000 0.00 0.00 0.00 3.57
234 235 2.325761 ACGCACTCAAATCTGTACGTC 58.674 47.619 0.00 0.00 0.00 4.34
235 236 1.654105 CGCACTCAAATCTGTACGTCC 59.346 52.381 0.00 0.00 0.00 4.79
236 237 2.000447 GCACTCAAATCTGTACGTCCC 59.000 52.381 0.00 0.00 0.00 4.46
237 238 2.618053 CACTCAAATCTGTACGTCCCC 58.382 52.381 0.00 0.00 0.00 4.81
238 239 1.203994 ACTCAAATCTGTACGTCCCCG 59.796 52.381 0.00 0.00 40.83 5.73
249 250 3.119096 GTCCCCGTTTGCGCTCTC 61.119 66.667 9.73 0.00 36.67 3.20
250 251 3.621805 TCCCCGTTTGCGCTCTCA 61.622 61.111 9.73 0.00 36.67 3.27
251 252 2.436646 CCCCGTTTGCGCTCTCAT 60.437 61.111 9.73 0.00 36.67 2.90
252 253 2.753966 CCCCGTTTGCGCTCTCATG 61.754 63.158 9.73 0.00 36.67 3.07
253 254 1.741401 CCCGTTTGCGCTCTCATGA 60.741 57.895 9.73 0.00 36.67 3.07
254 255 1.091771 CCCGTTTGCGCTCTCATGAT 61.092 55.000 9.73 0.00 36.67 2.45
255 256 0.027194 CCGTTTGCGCTCTCATGATG 59.973 55.000 9.73 0.00 36.67 3.07
256 257 1.001624 CGTTTGCGCTCTCATGATGA 58.998 50.000 9.73 0.00 0.00 2.92
257 258 1.267235 CGTTTGCGCTCTCATGATGAC 60.267 52.381 9.73 0.00 0.00 3.06
258 259 1.733912 GTTTGCGCTCTCATGATGACA 59.266 47.619 9.73 0.00 0.00 3.58
259 260 1.648504 TTGCGCTCTCATGATGACAG 58.351 50.000 9.73 0.00 0.00 3.51
260 261 0.179092 TGCGCTCTCATGATGACAGG 60.179 55.000 9.73 0.00 0.00 4.00
261 262 0.179089 GCGCTCTCATGATGACAGGT 60.179 55.000 0.00 0.00 0.00 4.00
262 263 1.568606 CGCTCTCATGATGACAGGTG 58.431 55.000 0.00 0.00 0.00 4.00
263 264 1.805495 CGCTCTCATGATGACAGGTGG 60.805 57.143 0.00 0.00 0.00 4.61
264 265 1.474677 GCTCTCATGATGACAGGTGGG 60.475 57.143 0.00 0.00 0.00 4.61
265 266 0.543277 TCTCATGATGACAGGTGGGC 59.457 55.000 0.00 0.00 0.00 5.36
266 267 0.465097 CTCATGATGACAGGTGGGCC 60.465 60.000 0.00 0.00 0.00 5.80
267 268 1.820906 CATGATGACAGGTGGGCCG 60.821 63.158 0.00 0.00 40.50 6.13
268 269 3.047807 ATGATGACAGGTGGGCCGG 62.048 63.158 0.00 0.00 40.50 6.13
269 270 3.717294 GATGACAGGTGGGCCGGT 61.717 66.667 1.90 0.00 45.77 5.28
270 271 3.976701 GATGACAGGTGGGCCGGTG 62.977 68.421 1.90 0.00 43.18 4.94
282 283 4.394712 CCGGTGCCACTCCTGGTC 62.395 72.222 0.00 0.00 40.17 4.02
283 284 4.394712 CGGTGCCACTCCTGGTCC 62.395 72.222 0.00 0.00 40.17 4.46
284 285 2.930562 GGTGCCACTCCTGGTCCT 60.931 66.667 0.00 0.00 40.17 3.85
285 286 1.612442 GGTGCCACTCCTGGTCCTA 60.612 63.158 0.00 0.00 40.17 2.94
286 287 0.983378 GGTGCCACTCCTGGTCCTAT 60.983 60.000 0.00 0.00 40.17 2.57
287 288 0.912486 GTGCCACTCCTGGTCCTATT 59.088 55.000 0.00 0.00 40.17 1.73
288 289 2.116238 GTGCCACTCCTGGTCCTATTA 58.884 52.381 0.00 0.00 40.17 0.98
289 290 2.103263 GTGCCACTCCTGGTCCTATTAG 59.897 54.545 0.00 0.00 40.17 1.73
290 291 2.292918 TGCCACTCCTGGTCCTATTAGT 60.293 50.000 0.00 0.00 40.17 2.24
291 292 2.365941 GCCACTCCTGGTCCTATTAGTC 59.634 54.545 0.00 0.00 40.17 2.59
292 293 2.623889 CCACTCCTGGTCCTATTAGTCG 59.376 54.545 0.00 0.00 32.03 4.18
293 294 2.623889 CACTCCTGGTCCTATTAGTCGG 59.376 54.545 0.00 0.00 0.00 4.79
294 295 1.614413 CTCCTGGTCCTATTAGTCGGC 59.386 57.143 0.00 0.00 0.00 5.54
295 296 1.217183 TCCTGGTCCTATTAGTCGGCT 59.783 52.381 0.00 0.00 0.00 5.52
296 297 1.341531 CCTGGTCCTATTAGTCGGCTG 59.658 57.143 0.00 0.00 0.00 4.85
297 298 0.750850 TGGTCCTATTAGTCGGCTGC 59.249 55.000 0.00 0.00 0.00 5.25
298 299 1.041437 GGTCCTATTAGTCGGCTGCT 58.959 55.000 0.00 0.00 0.00 4.24
299 300 1.000052 GGTCCTATTAGTCGGCTGCTC 60.000 57.143 0.00 0.00 0.00 4.26
300 301 1.957877 GTCCTATTAGTCGGCTGCTCT 59.042 52.381 0.00 0.00 0.00 4.09
301 302 1.957177 TCCTATTAGTCGGCTGCTCTG 59.043 52.381 0.00 0.00 0.00 3.35
302 303 1.000283 CCTATTAGTCGGCTGCTCTGG 60.000 57.143 0.00 0.00 0.00 3.86
303 304 1.683917 CTATTAGTCGGCTGCTCTGGT 59.316 52.381 0.00 0.00 0.00 4.00
304 305 0.905357 ATTAGTCGGCTGCTCTGGTT 59.095 50.000 0.00 0.00 0.00 3.67
305 306 0.037326 TTAGTCGGCTGCTCTGGTTG 60.037 55.000 0.00 0.00 0.00 3.77
306 307 2.507110 TAGTCGGCTGCTCTGGTTGC 62.507 60.000 0.00 0.00 0.00 4.17
307 308 3.939939 TCGGCTGCTCTGGTTGCA 61.940 61.111 0.00 0.00 38.81 4.08
308 309 3.730761 CGGCTGCTCTGGTTGCAC 61.731 66.667 0.00 0.00 36.37 4.57
309 310 3.730761 GGCTGCTCTGGTTGCACG 61.731 66.667 0.00 0.00 36.37 5.34
310 311 4.395583 GCTGCTCTGGTTGCACGC 62.396 66.667 0.00 0.00 36.37 5.34
311 312 3.730761 CTGCTCTGGTTGCACGCC 61.731 66.667 0.00 0.00 36.37 5.68
312 313 4.254709 TGCTCTGGTTGCACGCCT 62.255 61.111 7.86 0.00 35.31 5.52
313 314 3.426568 GCTCTGGTTGCACGCCTC 61.427 66.667 7.86 0.00 0.00 4.70
314 315 2.031012 CTCTGGTTGCACGCCTCA 59.969 61.111 7.86 0.00 0.00 3.86
315 316 2.280797 TCTGGTTGCACGCCTCAC 60.281 61.111 7.86 0.00 0.00 3.51
327 328 3.797353 CCTCACGGGATGGGGTGG 61.797 72.222 0.00 0.00 45.19 4.61
328 329 3.009115 CTCACGGGATGGGGTGGT 61.009 66.667 0.00 0.00 34.93 4.16
329 330 3.006728 TCACGGGATGGGGTGGTC 61.007 66.667 0.00 0.00 34.93 4.02
330 331 4.467084 CACGGGATGGGGTGGTCG 62.467 72.222 0.00 0.00 0.00 4.79
371 372 2.184836 CGGGATTGGCGACCGTAA 59.815 61.111 0.00 0.00 42.53 3.18
372 373 1.448189 CGGGATTGGCGACCGTAAA 60.448 57.895 0.00 0.00 42.53 2.01
373 374 1.020333 CGGGATTGGCGACCGTAAAA 61.020 55.000 0.00 0.00 42.53 1.52
374 375 0.448990 GGGATTGGCGACCGTAAAAC 59.551 55.000 0.00 0.00 0.00 2.43
375 376 1.158434 GGATTGGCGACCGTAAAACA 58.842 50.000 0.00 0.00 0.00 2.83
376 377 1.135888 GGATTGGCGACCGTAAAACAC 60.136 52.381 0.00 0.00 0.00 3.32
384 385 2.498887 CGTAAAACACGCAGCGCC 60.499 61.111 16.61 0.00 45.03 6.53
385 386 2.127003 GTAAAACACGCAGCGCCC 60.127 61.111 16.61 0.00 0.00 6.13
386 387 2.592001 TAAAACACGCAGCGCCCA 60.592 55.556 16.61 0.00 0.00 5.36
387 388 1.969064 TAAAACACGCAGCGCCCAT 60.969 52.632 16.61 0.00 0.00 4.00
388 389 2.193865 TAAAACACGCAGCGCCCATG 62.194 55.000 16.61 8.27 0.00 3.66
390 391 4.783621 ACACGCAGCGCCCATGAT 62.784 61.111 16.61 0.00 0.00 2.45
391 392 4.246206 CACGCAGCGCCCATGATG 62.246 66.667 16.61 0.00 0.00 3.07
395 396 2.335011 CAGCGCCCATGATGCATG 59.665 61.111 2.46 0.00 41.10 4.06
396 397 3.602677 AGCGCCCATGATGCATGC 61.603 61.111 11.82 11.82 40.20 4.06
397 398 4.657824 GCGCCCATGATGCATGCC 62.658 66.667 16.68 0.28 40.20 4.40
398 399 3.986006 CGCCCATGATGCATGCCC 61.986 66.667 16.68 7.77 40.20 5.36
399 400 3.986006 GCCCATGATGCATGCCCG 61.986 66.667 16.68 0.00 40.20 6.13
400 401 3.986006 CCCATGATGCATGCCCGC 61.986 66.667 16.68 4.85 40.20 6.13
401 402 3.986006 CCATGATGCATGCCCGCC 61.986 66.667 16.68 1.95 40.20 6.13
402 403 2.910479 CATGATGCATGCCCGCCT 60.910 61.111 16.68 0.00 35.02 5.52
403 404 2.910479 ATGATGCATGCCCGCCTG 60.910 61.111 16.68 0.00 0.00 4.85
404 405 3.726558 ATGATGCATGCCCGCCTGT 62.727 57.895 16.68 0.00 0.00 4.00
405 406 3.896133 GATGCATGCCCGCCTGTG 61.896 66.667 16.68 0.00 0.00 3.66
406 407 4.429522 ATGCATGCCCGCCTGTGA 62.430 61.111 16.68 0.00 0.00 3.58
418 419 4.126390 CTGTGACGCTCGCGCAAG 62.126 66.667 8.75 0.00 44.19 4.01
419 420 4.942481 TGTGACGCTCGCGCAAGT 62.942 61.111 8.75 0.00 44.19 3.16
420 421 4.122515 GTGACGCTCGCGCAAGTC 62.123 66.667 8.75 16.71 44.19 3.01
421 422 4.639171 TGACGCTCGCGCAAGTCA 62.639 61.111 20.45 20.45 44.19 3.41
422 423 3.403057 GACGCTCGCGCAAGTCAA 61.403 61.111 8.75 0.00 44.19 3.18
423 424 2.730672 GACGCTCGCGCAAGTCAAT 61.731 57.895 8.75 0.00 44.19 2.57
424 425 2.020559 CGCTCGCGCAAGTCAATC 59.979 61.111 8.75 0.00 41.68 2.67
425 426 2.447887 CGCTCGCGCAAGTCAATCT 61.448 57.895 8.75 0.00 41.68 2.40
426 427 1.059994 GCTCGCGCAAGTCAATCTG 59.940 57.895 8.75 0.00 41.68 2.90
427 428 1.354337 GCTCGCGCAAGTCAATCTGA 61.354 55.000 8.75 0.00 41.68 3.27
428 429 3.479658 GCTCGCGCAAGTCAATCTGAC 62.480 57.143 8.75 0.00 40.87 3.51
436 437 2.654939 GTCAATCTGACGAGACGCC 58.345 57.895 0.00 0.00 37.67 5.68
437 438 0.109272 GTCAATCTGACGAGACGCCA 60.109 55.000 0.00 0.00 37.67 5.69
438 439 0.601057 TCAATCTGACGAGACGCCAA 59.399 50.000 0.00 0.00 0.00 4.52
439 440 1.204704 TCAATCTGACGAGACGCCAAT 59.795 47.619 0.00 0.00 0.00 3.16
440 441 1.590238 CAATCTGACGAGACGCCAATC 59.410 52.381 0.00 0.00 0.00 2.67
441 442 0.103208 ATCTGACGAGACGCCAATCC 59.897 55.000 0.00 0.00 0.00 3.01
442 443 1.519455 CTGACGAGACGCCAATCCC 60.519 63.158 0.00 0.00 0.00 3.85
443 444 2.225791 CTGACGAGACGCCAATCCCA 62.226 60.000 0.00 0.00 0.00 4.37
444 445 1.810030 GACGAGACGCCAATCCCAC 60.810 63.158 0.00 0.00 0.00 4.61
445 446 2.264480 CGAGACGCCAATCCCACA 59.736 61.111 0.00 0.00 0.00 4.17
446 447 1.153369 CGAGACGCCAATCCCACAT 60.153 57.895 0.00 0.00 0.00 3.21
447 448 1.431488 CGAGACGCCAATCCCACATG 61.431 60.000 0.00 0.00 0.00 3.21
448 449 0.392998 GAGACGCCAATCCCACATGT 60.393 55.000 0.00 0.00 0.00 3.21
449 450 0.392998 AGACGCCAATCCCACATGTC 60.393 55.000 0.00 0.00 0.00 3.06
450 451 0.676466 GACGCCAATCCCACATGTCA 60.676 55.000 0.00 0.00 0.00 3.58
451 452 0.034186 ACGCCAATCCCACATGTCAT 60.034 50.000 0.00 0.00 0.00 3.06
452 453 0.382873 CGCCAATCCCACATGTCATG 59.617 55.000 11.41 11.41 0.00 3.07
453 454 0.748450 GCCAATCCCACATGTCATGG 59.252 55.000 17.08 1.54 36.94 3.66
454 455 0.748450 CCAATCCCACATGTCATGGC 59.252 55.000 17.08 0.00 35.74 4.40
455 456 0.748450 CAATCCCACATGTCATGGCC 59.252 55.000 17.08 0.00 35.74 5.36
456 457 0.632835 AATCCCACATGTCATGGCCT 59.367 50.000 17.08 0.00 35.74 5.19
457 458 0.106369 ATCCCACATGTCATGGCCTG 60.106 55.000 17.08 0.59 35.74 4.85
458 459 2.420568 CCCACATGTCATGGCCTGC 61.421 63.158 17.08 0.00 35.74 4.85
459 460 1.679641 CCACATGTCATGGCCTGCA 60.680 57.895 17.08 3.33 33.60 4.41
460 461 1.252215 CCACATGTCATGGCCTGCAA 61.252 55.000 17.08 0.00 33.60 4.08
461 462 0.172578 CACATGTCATGGCCTGCAAG 59.827 55.000 17.08 2.93 33.60 4.01
462 463 0.038599 ACATGTCATGGCCTGCAAGA 59.961 50.000 17.08 0.00 31.48 3.02
463 464 1.179152 CATGTCATGGCCTGCAAGAA 58.821 50.000 3.32 0.00 34.07 2.52
464 465 1.135199 CATGTCATGGCCTGCAAGAAC 60.135 52.381 3.32 0.00 34.07 3.01
465 466 0.111061 TGTCATGGCCTGCAAGAACT 59.889 50.000 3.32 0.00 34.07 3.01
466 467 0.807496 GTCATGGCCTGCAAGAACTC 59.193 55.000 3.32 0.00 34.07 3.01
467 468 0.401356 TCATGGCCTGCAAGAACTCA 59.599 50.000 3.32 0.00 34.07 3.41
468 469 0.524862 CATGGCCTGCAAGAACTCAC 59.475 55.000 3.32 0.00 34.07 3.51
469 470 0.610232 ATGGCCTGCAAGAACTCACC 60.610 55.000 3.32 0.00 34.07 4.02
470 471 1.973812 GGCCTGCAAGAACTCACCC 60.974 63.158 0.00 0.00 34.07 4.61
471 472 1.973812 GCCTGCAAGAACTCACCCC 60.974 63.158 0.00 0.00 34.07 4.95
472 473 1.672356 CCTGCAAGAACTCACCCCG 60.672 63.158 0.00 0.00 34.07 5.73
473 474 2.281484 TGCAAGAACTCACCCCGC 60.281 61.111 0.00 0.00 0.00 6.13
474 475 3.423154 GCAAGAACTCACCCCGCG 61.423 66.667 0.00 0.00 0.00 6.46
475 476 2.742372 CAAGAACTCACCCCGCGG 60.742 66.667 21.04 21.04 0.00 6.46
476 477 3.239253 AAGAACTCACCCCGCGGT 61.239 61.111 26.12 2.55 46.31 5.68
477 478 3.236003 AAGAACTCACCCCGCGGTC 62.236 63.158 26.12 13.20 42.04 4.79
478 479 3.998672 GAACTCACCCCGCGGTCA 61.999 66.667 26.12 3.18 42.04 4.02
479 480 3.524648 GAACTCACCCCGCGGTCAA 62.525 63.158 26.12 5.44 42.04 3.18
480 481 2.999739 GAACTCACCCCGCGGTCAAA 63.000 60.000 26.12 5.85 42.04 2.69
481 482 2.281208 CTCACCCCGCGGTCAAAA 60.281 61.111 26.12 4.27 42.04 2.44
482 483 2.592287 TCACCCCGCGGTCAAAAC 60.592 61.111 26.12 0.00 42.04 2.43
483 484 2.593436 CACCCCGCGGTCAAAACT 60.593 61.111 26.12 0.00 42.04 2.66
484 485 1.301874 CACCCCGCGGTCAAAACTA 60.302 57.895 26.12 0.00 42.04 2.24
485 486 0.885596 CACCCCGCGGTCAAAACTAA 60.886 55.000 26.12 0.00 42.04 2.24
486 487 0.179023 ACCCCGCGGTCAAAACTAAA 60.179 50.000 26.12 0.00 38.28 1.85
487 488 0.953003 CCCCGCGGTCAAAACTAAAA 59.047 50.000 26.12 0.00 0.00 1.52
488 489 1.335233 CCCCGCGGTCAAAACTAAAAC 60.335 52.381 26.12 0.00 0.00 2.43
489 490 1.334243 CCCGCGGTCAAAACTAAAACA 59.666 47.619 26.12 0.00 0.00 2.83
490 491 2.223525 CCCGCGGTCAAAACTAAAACAA 60.224 45.455 26.12 0.00 0.00 2.83
491 492 2.784928 CCGCGGTCAAAACTAAAACAAC 59.215 45.455 19.50 0.00 0.00 3.32
492 493 3.427243 CGCGGTCAAAACTAAAACAACA 58.573 40.909 0.00 0.00 0.00 3.33
493 494 3.480668 CGCGGTCAAAACTAAAACAACAG 59.519 43.478 0.00 0.00 0.00 3.16
494 495 4.664188 GCGGTCAAAACTAAAACAACAGA 58.336 39.130 0.00 0.00 0.00 3.41
495 496 5.096849 GCGGTCAAAACTAAAACAACAGAA 58.903 37.500 0.00 0.00 0.00 3.02
496 497 5.229260 GCGGTCAAAACTAAAACAACAGAAG 59.771 40.000 0.00 0.00 0.00 2.85
497 498 6.548171 CGGTCAAAACTAAAACAACAGAAGA 58.452 36.000 0.00 0.00 0.00 2.87
498 499 7.193595 CGGTCAAAACTAAAACAACAGAAGAT 58.806 34.615 0.00 0.00 0.00 2.40
499 500 7.376072 CGGTCAAAACTAAAACAACAGAAGATC 59.624 37.037 0.00 0.00 0.00 2.75
500 501 7.648112 GGTCAAAACTAAAACAACAGAAGATCC 59.352 37.037 0.00 0.00 0.00 3.36
501 502 8.188139 GTCAAAACTAAAACAACAGAAGATCCA 58.812 33.333 0.00 0.00 0.00 3.41
502 503 8.744652 TCAAAACTAAAACAACAGAAGATCCAA 58.255 29.630 0.00 0.00 0.00 3.53
503 504 8.807581 CAAAACTAAAACAACAGAAGATCCAAC 58.192 33.333 0.00 0.00 0.00 3.77
504 505 6.300354 ACTAAAACAACAGAAGATCCAACG 57.700 37.500 0.00 0.00 0.00 4.10
505 506 5.820947 ACTAAAACAACAGAAGATCCAACGT 59.179 36.000 0.00 0.00 0.00 3.99
506 507 4.552166 AAACAACAGAAGATCCAACGTG 57.448 40.909 0.00 0.00 0.00 4.49
507 508 3.469008 ACAACAGAAGATCCAACGTGA 57.531 42.857 0.00 0.00 0.00 4.35
508 509 3.804036 ACAACAGAAGATCCAACGTGAA 58.196 40.909 0.00 0.00 0.00 3.18
509 510 3.560068 ACAACAGAAGATCCAACGTGAAC 59.440 43.478 0.00 0.00 0.00 3.18
510 511 2.404215 ACAGAAGATCCAACGTGAACG 58.596 47.619 0.40 0.40 46.33 3.95
511 512 2.035449 ACAGAAGATCCAACGTGAACGA 59.965 45.455 10.26 0.00 43.02 3.85
512 513 2.408704 CAGAAGATCCAACGTGAACGAC 59.591 50.000 10.26 0.00 43.02 4.34
513 514 1.725164 GAAGATCCAACGTGAACGACC 59.275 52.381 10.26 0.00 43.02 4.79
514 515 0.388134 AGATCCAACGTGAACGACCG 60.388 55.000 10.26 0.00 43.02 4.79
515 516 0.387622 GATCCAACGTGAACGACCGA 60.388 55.000 10.26 1.79 43.02 4.69
516 517 0.032403 ATCCAACGTGAACGACCGAA 59.968 50.000 10.26 0.00 43.02 4.30
517 518 0.595567 TCCAACGTGAACGACCGAAG 60.596 55.000 10.26 0.00 43.02 3.79
531 532 3.761481 CGAAGGAAGCTGCTGTTTG 57.239 52.632 1.35 0.00 0.00 2.93
532 533 1.229428 CGAAGGAAGCTGCTGTTTGA 58.771 50.000 1.35 0.00 0.00 2.69
533 534 1.069636 CGAAGGAAGCTGCTGTTTGAC 60.070 52.381 1.35 0.00 0.00 3.18
534 535 1.268079 GAAGGAAGCTGCTGTTTGACC 59.732 52.381 1.35 0.77 0.00 4.02
535 536 0.183492 AGGAAGCTGCTGTTTGACCA 59.817 50.000 1.35 0.00 0.00 4.02
536 537 1.032014 GGAAGCTGCTGTTTGACCAA 58.968 50.000 1.35 0.00 0.00 3.67
537 538 1.269257 GGAAGCTGCTGTTTGACCAAC 60.269 52.381 1.35 0.00 35.71 3.77
538 539 0.381801 AAGCTGCTGTTTGACCAACG 59.618 50.000 1.35 0.00 38.36 4.10
539 540 0.748005 AGCTGCTGTTTGACCAACGT 60.748 50.000 0.00 0.00 38.36 3.99
540 541 0.317020 GCTGCTGTTTGACCAACGTC 60.317 55.000 0.00 0.00 38.36 4.34
541 542 0.307760 CTGCTGTTTGACCAACGTCC 59.692 55.000 0.00 0.00 38.36 4.79
542 543 0.393132 TGCTGTTTGACCAACGTCCA 60.393 50.000 0.00 0.00 38.36 4.02
543 544 0.736053 GCTGTTTGACCAACGTCCAA 59.264 50.000 0.00 0.00 38.36 3.53
544 545 1.533129 GCTGTTTGACCAACGTCCAAC 60.533 52.381 0.00 1.42 42.32 3.77
545 546 0.727970 TGTTTGACCAACGTCCAACG 59.272 50.000 0.00 0.00 44.00 4.10
555 556 3.383026 CGTCCAACGGCTGAAATTG 57.617 52.632 0.00 0.00 38.08 2.32
556 557 0.871722 CGTCCAACGGCTGAAATTGA 59.128 50.000 0.00 0.00 38.08 2.57
557 558 1.265635 CGTCCAACGGCTGAAATTGAA 59.734 47.619 0.00 0.00 38.08 2.69
558 559 2.665519 CGTCCAACGGCTGAAATTGAAG 60.666 50.000 0.00 0.00 38.08 3.02
559 560 1.269448 TCCAACGGCTGAAATTGAAGC 59.731 47.619 0.00 4.41 38.76 3.86
560 561 1.000385 CCAACGGCTGAAATTGAAGCA 60.000 47.619 13.08 0.00 41.36 3.91
561 562 2.545532 CCAACGGCTGAAATTGAAGCAA 60.546 45.455 13.08 0.00 41.36 3.91
562 563 3.122297 CAACGGCTGAAATTGAAGCAAA 58.878 40.909 13.08 0.00 41.36 3.68
563 564 3.665745 ACGGCTGAAATTGAAGCAAAT 57.334 38.095 13.08 0.00 41.36 2.32
564 565 3.578688 ACGGCTGAAATTGAAGCAAATC 58.421 40.909 13.08 0.00 41.36 2.17
565 566 2.595536 CGGCTGAAATTGAAGCAAATCG 59.404 45.455 13.08 5.25 41.36 3.34
566 567 2.925563 GGCTGAAATTGAAGCAAATCGG 59.074 45.455 13.08 0.00 41.36 4.18
567 568 2.925563 GCTGAAATTGAAGCAAATCGGG 59.074 45.455 7.56 0.00 39.31 5.14
568 569 3.514645 CTGAAATTGAAGCAAATCGGGG 58.485 45.455 0.00 0.00 0.00 5.73
569 570 2.233431 TGAAATTGAAGCAAATCGGGGG 59.767 45.455 0.00 0.00 0.00 5.40
570 571 2.230130 AATTGAAGCAAATCGGGGGA 57.770 45.000 0.00 0.00 0.00 4.81
571 572 1.474330 ATTGAAGCAAATCGGGGGAC 58.526 50.000 0.00 0.00 0.00 4.46
572 573 0.111446 TTGAAGCAAATCGGGGGACA 59.889 50.000 0.00 0.00 0.00 4.02
573 574 0.111446 TGAAGCAAATCGGGGGACAA 59.889 50.000 0.00 0.00 0.00 3.18
574 575 0.526211 GAAGCAAATCGGGGGACAAC 59.474 55.000 0.00 0.00 0.00 3.32
575 576 0.898326 AAGCAAATCGGGGGACAACC 60.898 55.000 0.00 0.00 39.11 3.77
581 582 4.388499 CGGGGGACAACCGTGGAG 62.388 72.222 0.00 0.00 46.03 3.86
582 583 2.926242 GGGGGACAACCGTGGAGA 60.926 66.667 0.00 0.00 41.60 3.71
583 584 2.346365 GGGGACAACCGTGGAGAC 59.654 66.667 0.00 0.00 41.60 3.36
584 585 2.048503 GGGACAACCGTGGAGACG 60.049 66.667 0.00 0.00 45.67 4.18
595 596 1.997669 GTGGAGACGAGTTGGCTAAG 58.002 55.000 0.00 0.00 0.00 2.18
596 597 1.272769 GTGGAGACGAGTTGGCTAAGT 59.727 52.381 0.00 0.00 0.00 2.24
597 598 1.968493 TGGAGACGAGTTGGCTAAGTT 59.032 47.619 0.00 0.00 0.00 2.66
598 599 2.029290 TGGAGACGAGTTGGCTAAGTTC 60.029 50.000 0.00 0.00 0.00 3.01
599 600 2.029290 GGAGACGAGTTGGCTAAGTTCA 60.029 50.000 0.00 0.00 0.00 3.18
600 601 3.368531 GGAGACGAGTTGGCTAAGTTCAT 60.369 47.826 0.00 0.00 0.00 2.57
601 602 4.246458 GAGACGAGTTGGCTAAGTTCATT 58.754 43.478 0.00 0.00 0.00 2.57
602 603 5.401531 AGACGAGTTGGCTAAGTTCATTA 57.598 39.130 0.00 0.00 0.00 1.90
603 604 5.978814 AGACGAGTTGGCTAAGTTCATTAT 58.021 37.500 0.00 0.00 0.00 1.28
604 605 7.108841 AGACGAGTTGGCTAAGTTCATTATA 57.891 36.000 0.00 0.00 0.00 0.98
605 606 7.727181 AGACGAGTTGGCTAAGTTCATTATAT 58.273 34.615 0.00 0.00 0.00 0.86
606 607 7.653713 AGACGAGTTGGCTAAGTTCATTATATG 59.346 37.037 0.00 0.00 0.00 1.78
607 608 7.272978 ACGAGTTGGCTAAGTTCATTATATGT 58.727 34.615 0.00 0.00 0.00 2.29
608 609 7.769044 ACGAGTTGGCTAAGTTCATTATATGTT 59.231 33.333 0.00 0.00 0.00 2.71
609 610 9.256477 CGAGTTGGCTAAGTTCATTATATGTTA 57.744 33.333 0.00 0.00 0.00 2.41
895 922 0.872021 CGCAGGTATCCGAGTTCAGC 60.872 60.000 0.00 0.00 0.00 4.26
2092 2219 1.905922 GCTGCTTCTTCAGTCACGGC 61.906 60.000 0.00 0.00 36.49 5.68
2135 2262 1.452833 GGAGAGCCCATGACAAGCC 60.453 63.158 0.00 0.00 34.14 4.35
2280 2407 1.676006 CCCCGTGGCAATATTGAGTTC 59.324 52.381 19.73 5.75 0.00 3.01
2314 2441 6.015519 CCTGGAATTGAAGTAAACATGGTTCA 60.016 38.462 0.00 0.00 0.00 3.18
2416 2543 6.691818 CGTATCGTGTAGTTTCTGATAGCTTT 59.308 38.462 0.00 0.00 0.00 3.51
2463 2590 2.636647 TTAAGACGGGGTTCGGTTTT 57.363 45.000 0.00 0.00 44.45 2.43
2752 5243 1.183676 ACTTCTAGTGTCGCCGGGTT 61.184 55.000 2.18 0.00 0.00 4.11
2934 5460 3.682858 GGTAAGATTAGCTGTTCGTGCAA 59.317 43.478 0.00 0.00 0.00 4.08
3081 5608 4.780815 ACTGACATGTGTATAACCCCATG 58.219 43.478 1.15 0.00 40.34 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 2.114411 AAAACATCACGGGCGGGT 59.886 55.556 0.00 0.00 0.00 5.28
164 165 3.585990 CCAATCCATCCGCACGCC 61.586 66.667 0.00 0.00 0.00 5.68
166 167 2.188829 ATGCCAATCCATCCGCACG 61.189 57.895 0.00 0.00 33.31 5.34
167 168 1.361271 CATGCCAATCCATCCGCAC 59.639 57.895 0.00 0.00 33.31 5.34
168 169 1.829096 CCATGCCAATCCATCCGCA 60.829 57.895 0.00 0.00 35.35 5.69
169 170 2.567497 CCCATGCCAATCCATCCGC 61.567 63.158 0.00 0.00 0.00 5.54
170 171 2.567497 GCCCATGCCAATCCATCCG 61.567 63.158 0.00 0.00 0.00 4.18
171 172 2.567497 CGCCCATGCCAATCCATCC 61.567 63.158 0.00 0.00 0.00 3.51
172 173 3.045142 CGCCCATGCCAATCCATC 58.955 61.111 0.00 0.00 0.00 3.51
173 174 3.228759 GCGCCCATGCCAATCCAT 61.229 61.111 0.00 0.00 0.00 3.41
191 192 3.717294 CCAACCGACCCCTCCAGG 61.717 72.222 0.00 0.00 0.00 4.45
192 193 4.410400 GCCAACCGACCCCTCCAG 62.410 72.222 0.00 0.00 0.00 3.86
197 198 4.476752 TATGCGCCAACCGACCCC 62.477 66.667 4.18 0.00 40.02 4.95
198 199 3.199891 GTATGCGCCAACCGACCC 61.200 66.667 4.18 0.00 40.02 4.46
199 200 3.560278 CGTATGCGCCAACCGACC 61.560 66.667 4.18 0.00 40.02 4.79
210 211 3.301835 CGTACAGATTTGAGTGCGTATGC 60.302 47.826 0.00 0.00 38.69 3.14
211 212 4.422997 CGTACAGATTTGAGTGCGTATG 57.577 45.455 0.00 0.00 38.69 2.39
215 216 1.654105 GGACGTACAGATTTGAGTGCG 59.346 52.381 0.00 0.00 46.76 5.34
216 217 2.000447 GGGACGTACAGATTTGAGTGC 59.000 52.381 0.00 0.00 0.00 4.40
217 218 2.618053 GGGGACGTACAGATTTGAGTG 58.382 52.381 0.00 0.00 0.00 3.51
232 233 3.119096 GAGAGCGCAAACGGGGAC 61.119 66.667 11.47 0.00 40.57 4.46
233 234 2.954684 ATGAGAGCGCAAACGGGGA 61.955 57.895 11.47 0.00 40.57 4.81
234 235 2.436646 ATGAGAGCGCAAACGGGG 60.437 61.111 11.47 0.00 40.57 5.73
235 236 1.091771 ATCATGAGAGCGCAAACGGG 61.092 55.000 11.47 0.00 40.57 5.28
236 237 0.027194 CATCATGAGAGCGCAAACGG 59.973 55.000 11.47 0.00 40.57 4.44
237 238 1.001624 TCATCATGAGAGCGCAAACG 58.998 50.000 11.47 0.00 44.07 3.60
238 239 1.733912 TGTCATCATGAGAGCGCAAAC 59.266 47.619 11.47 0.00 0.00 2.93
239 240 2.004733 CTGTCATCATGAGAGCGCAAA 58.995 47.619 11.47 0.00 30.87 3.68
240 241 1.648504 CTGTCATCATGAGAGCGCAA 58.351 50.000 11.47 0.00 30.87 4.85
241 242 0.179092 CCTGTCATCATGAGAGCGCA 60.179 55.000 11.47 0.00 36.55 6.09
242 243 0.179089 ACCTGTCATCATGAGAGCGC 60.179 55.000 6.27 0.00 36.55 5.92
243 244 1.568606 CACCTGTCATCATGAGAGCG 58.431 55.000 6.27 2.94 36.55 5.03
244 245 1.474677 CCCACCTGTCATCATGAGAGC 60.475 57.143 6.27 0.00 36.55 4.09
245 246 1.474677 GCCCACCTGTCATCATGAGAG 60.475 57.143 4.75 4.75 37.50 3.20
246 247 0.543277 GCCCACCTGTCATCATGAGA 59.457 55.000 0.09 0.00 0.00 3.27
247 248 0.465097 GGCCCACCTGTCATCATGAG 60.465 60.000 0.09 0.00 0.00 2.90
248 249 1.609239 GGCCCACCTGTCATCATGA 59.391 57.895 0.00 0.00 0.00 3.07
249 250 1.820906 CGGCCCACCTGTCATCATG 60.821 63.158 0.00 0.00 0.00 3.07
250 251 2.591753 CGGCCCACCTGTCATCAT 59.408 61.111 0.00 0.00 0.00 2.45
251 252 3.716195 CCGGCCCACCTGTCATCA 61.716 66.667 0.00 0.00 0.00 3.07
252 253 3.717294 ACCGGCCCACCTGTCATC 61.717 66.667 0.00 0.00 0.00 2.92
253 254 4.033776 CACCGGCCCACCTGTCAT 62.034 66.667 0.00 0.00 29.65 3.06
272 273 2.623889 CCGACTAATAGGACCAGGAGTG 59.376 54.545 0.00 0.00 0.00 3.51
273 274 2.946785 CCGACTAATAGGACCAGGAGT 58.053 52.381 0.00 0.00 0.00 3.85
274 275 1.614413 GCCGACTAATAGGACCAGGAG 59.386 57.143 0.00 0.00 0.00 3.69
275 276 1.217183 AGCCGACTAATAGGACCAGGA 59.783 52.381 0.00 0.00 0.00 3.86
276 277 1.341531 CAGCCGACTAATAGGACCAGG 59.658 57.143 0.00 0.00 0.00 4.45
277 278 1.269831 GCAGCCGACTAATAGGACCAG 60.270 57.143 0.00 0.00 0.00 4.00
278 279 0.750850 GCAGCCGACTAATAGGACCA 59.249 55.000 0.00 0.00 0.00 4.02
279 280 1.000052 GAGCAGCCGACTAATAGGACC 60.000 57.143 0.00 0.00 0.00 4.46
280 281 1.957877 AGAGCAGCCGACTAATAGGAC 59.042 52.381 0.00 0.00 0.00 3.85
281 282 1.957177 CAGAGCAGCCGACTAATAGGA 59.043 52.381 0.00 0.00 0.00 2.94
282 283 1.000283 CCAGAGCAGCCGACTAATAGG 60.000 57.143 0.00 0.00 0.00 2.57
283 284 1.683917 ACCAGAGCAGCCGACTAATAG 59.316 52.381 0.00 0.00 0.00 1.73
284 285 1.776662 ACCAGAGCAGCCGACTAATA 58.223 50.000 0.00 0.00 0.00 0.98
285 286 0.905357 AACCAGAGCAGCCGACTAAT 59.095 50.000 0.00 0.00 0.00 1.73
286 287 0.037326 CAACCAGAGCAGCCGACTAA 60.037 55.000 0.00 0.00 0.00 2.24
287 288 1.591703 CAACCAGAGCAGCCGACTA 59.408 57.895 0.00 0.00 0.00 2.59
288 289 2.345244 CAACCAGAGCAGCCGACT 59.655 61.111 0.00 0.00 0.00 4.18
289 290 3.426568 GCAACCAGAGCAGCCGAC 61.427 66.667 0.00 0.00 0.00 4.79
290 291 3.939939 TGCAACCAGAGCAGCCGA 61.940 61.111 0.00 0.00 37.02 5.54
291 292 3.730761 GTGCAACCAGAGCAGCCG 61.731 66.667 0.00 0.00 43.63 5.52
292 293 3.730761 CGTGCAACCAGAGCAGCC 61.731 66.667 0.00 0.00 43.63 4.85
293 294 4.395583 GCGTGCAACCAGAGCAGC 62.396 66.667 0.00 0.00 43.63 5.25
294 295 3.730761 GGCGTGCAACCAGAGCAG 61.731 66.667 2.12 0.00 43.63 4.24
295 296 4.254709 AGGCGTGCAACCAGAGCA 62.255 61.111 9.56 0.00 40.19 4.26
296 297 3.426568 GAGGCGTGCAACCAGAGC 61.427 66.667 9.56 0.00 0.00 4.09
297 298 2.031012 TGAGGCGTGCAACCAGAG 59.969 61.111 9.56 0.00 0.00 3.35
298 299 2.280797 GTGAGGCGTGCAACCAGA 60.281 61.111 9.56 0.00 0.00 3.86
299 300 3.716006 CGTGAGGCGTGCAACCAG 61.716 66.667 9.56 0.00 35.54 4.00
311 312 3.009115 ACCACCCCATCCCGTGAG 61.009 66.667 0.00 0.00 31.36 3.51
312 313 3.006728 GACCACCCCATCCCGTGA 61.007 66.667 0.00 0.00 31.36 4.35
313 314 4.467084 CGACCACCCCATCCCGTG 62.467 72.222 0.00 0.00 0.00 4.94
353 354 4.517815 TACGGTCGCCAATCCCGC 62.518 66.667 0.00 0.00 45.49 6.13
354 355 1.020333 TTTTACGGTCGCCAATCCCG 61.020 55.000 0.00 0.00 46.93 5.14
355 356 0.448990 GTTTTACGGTCGCCAATCCC 59.551 55.000 0.00 0.00 0.00 3.85
356 357 1.135888 GTGTTTTACGGTCGCCAATCC 60.136 52.381 0.00 0.00 0.00 3.01
357 358 2.236741 GTGTTTTACGGTCGCCAATC 57.763 50.000 0.00 0.00 0.00 2.67
368 369 2.127003 GGGCGCTGCGTGTTTTAC 60.127 61.111 24.04 4.42 0.00 2.01
369 370 1.969064 ATGGGCGCTGCGTGTTTTA 60.969 52.632 24.04 5.08 0.00 1.52
370 371 3.294493 ATGGGCGCTGCGTGTTTT 61.294 55.556 24.04 2.44 0.00 2.43
371 372 4.041917 CATGGGCGCTGCGTGTTT 62.042 61.111 24.04 3.92 0.00 2.83
373 374 4.783621 ATCATGGGCGCTGCGTGT 62.784 61.111 24.04 4.41 0.00 4.49
374 375 4.246206 CATCATGGGCGCTGCGTG 62.246 66.667 24.04 13.69 0.00 5.34
377 378 3.602677 ATGCATCATGGGCGCTGC 61.603 61.111 7.64 8.96 35.21 5.25
378 379 2.335011 CATGCATCATGGGCGCTG 59.665 61.111 7.64 0.00 38.11 5.18
379 380 3.602677 GCATGCATCATGGGCGCT 61.603 61.111 14.21 0.00 41.64 5.92
380 381 4.657824 GGCATGCATCATGGGCGC 62.658 66.667 21.36 0.00 41.64 6.53
381 382 3.986006 GGGCATGCATCATGGGCG 61.986 66.667 21.36 0.00 41.64 6.13
382 383 3.986006 CGGGCATGCATCATGGGC 61.986 66.667 21.36 0.00 41.64 5.36
383 384 3.986006 GCGGGCATGCATCATGGG 61.986 66.667 21.36 0.88 41.64 4.00
384 385 3.986006 GGCGGGCATGCATCATGG 61.986 66.667 21.36 2.34 41.64 3.66
385 386 2.910479 AGGCGGGCATGCATCATG 60.910 61.111 21.36 4.78 43.91 3.07
386 387 2.910479 CAGGCGGGCATGCATCAT 60.910 61.111 21.36 1.97 36.28 2.45
387 388 4.429522 ACAGGCGGGCATGCATCA 62.430 61.111 21.36 0.00 36.28 3.07
388 389 3.896133 CACAGGCGGGCATGCATC 61.896 66.667 21.36 10.11 36.28 3.91
389 390 4.429522 TCACAGGCGGGCATGCAT 62.430 61.111 21.36 0.00 36.28 3.96
409 410 0.368227 GTCAGATTGACTTGCGCGAG 59.632 55.000 23.34 23.34 43.73 5.03
410 411 1.344226 CGTCAGATTGACTTGCGCGA 61.344 55.000 12.10 0.00 44.85 5.87
411 412 1.057822 CGTCAGATTGACTTGCGCG 59.942 57.895 0.00 0.00 44.85 6.86
412 413 0.368227 CTCGTCAGATTGACTTGCGC 59.632 55.000 0.00 0.00 44.85 6.09
413 414 1.651138 GTCTCGTCAGATTGACTTGCG 59.349 52.381 7.52 0.00 44.85 4.85
414 415 1.651138 CGTCTCGTCAGATTGACTTGC 59.349 52.381 7.52 0.00 44.85 4.01
415 416 1.651138 GCGTCTCGTCAGATTGACTTG 59.349 52.381 7.52 1.08 44.85 3.16
416 417 1.402984 GGCGTCTCGTCAGATTGACTT 60.403 52.381 7.52 0.00 44.85 3.01
417 418 0.171455 GGCGTCTCGTCAGATTGACT 59.829 55.000 7.52 0.00 44.85 3.41
418 419 0.109272 TGGCGTCTCGTCAGATTGAC 60.109 55.000 0.00 0.00 43.65 3.18
419 420 0.601057 TTGGCGTCTCGTCAGATTGA 59.399 50.000 0.00 0.00 43.85 2.57
420 421 1.590238 GATTGGCGTCTCGTCAGATTG 59.410 52.381 0.00 0.00 43.85 2.67
421 422 1.471676 GGATTGGCGTCTCGTCAGATT 60.472 52.381 0.00 0.00 43.85 2.40
422 423 0.103208 GGATTGGCGTCTCGTCAGAT 59.897 55.000 0.00 0.00 43.85 2.90
423 424 1.511305 GGATTGGCGTCTCGTCAGA 59.489 57.895 0.00 0.00 43.85 3.27
424 425 1.519455 GGGATTGGCGTCTCGTCAG 60.519 63.158 0.00 0.00 43.85 3.51
425 426 2.279810 TGGGATTGGCGTCTCGTCA 61.280 57.895 0.00 0.00 40.58 4.35
426 427 1.810030 GTGGGATTGGCGTCTCGTC 60.810 63.158 0.00 0.00 0.00 4.20
427 428 1.899437 ATGTGGGATTGGCGTCTCGT 61.899 55.000 0.00 0.00 0.00 4.18
428 429 1.153369 ATGTGGGATTGGCGTCTCG 60.153 57.895 0.00 0.00 0.00 4.04
429 430 0.392998 ACATGTGGGATTGGCGTCTC 60.393 55.000 0.00 0.00 0.00 3.36
430 431 0.392998 GACATGTGGGATTGGCGTCT 60.393 55.000 1.15 0.00 0.00 4.18
431 432 0.676466 TGACATGTGGGATTGGCGTC 60.676 55.000 1.15 0.00 0.00 5.19
432 433 0.034186 ATGACATGTGGGATTGGCGT 60.034 50.000 1.15 0.00 0.00 5.68
433 434 0.382873 CATGACATGTGGGATTGGCG 59.617 55.000 1.15 0.00 0.00 5.69
434 435 0.748450 CCATGACATGTGGGATTGGC 59.252 55.000 14.26 0.00 32.98 4.52
435 436 0.748450 GCCATGACATGTGGGATTGG 59.252 55.000 14.26 3.96 37.22 3.16
436 437 0.748450 GGCCATGACATGTGGGATTG 59.252 55.000 14.26 0.00 37.22 2.67
437 438 0.632835 AGGCCATGACATGTGGGATT 59.367 50.000 14.26 0.00 37.22 3.01
438 439 0.106369 CAGGCCATGACATGTGGGAT 60.106 55.000 14.26 0.00 37.22 3.85
439 440 1.303948 CAGGCCATGACATGTGGGA 59.696 57.895 14.26 0.00 37.22 4.37
440 441 2.420568 GCAGGCCATGACATGTGGG 61.421 63.158 14.26 2.93 37.22 4.61
441 442 1.252215 TTGCAGGCCATGACATGTGG 61.252 55.000 14.26 0.00 39.80 4.17
442 443 0.172578 CTTGCAGGCCATGACATGTG 59.827 55.000 14.26 7.33 0.00 3.21
443 444 0.038599 TCTTGCAGGCCATGACATGT 59.961 50.000 14.26 0.00 0.00 3.21
444 445 1.135199 GTTCTTGCAGGCCATGACATG 60.135 52.381 5.01 8.56 0.00 3.21
445 446 1.180029 GTTCTTGCAGGCCATGACAT 58.820 50.000 5.01 0.00 0.00 3.06
446 447 0.111061 AGTTCTTGCAGGCCATGACA 59.889 50.000 5.01 0.64 0.00 3.58
447 448 0.807496 GAGTTCTTGCAGGCCATGAC 59.193 55.000 5.01 0.00 0.00 3.06
448 449 0.401356 TGAGTTCTTGCAGGCCATGA 59.599 50.000 5.01 0.00 0.00 3.07
449 450 0.524862 GTGAGTTCTTGCAGGCCATG 59.475 55.000 5.01 0.97 0.00 3.66
450 451 0.610232 GGTGAGTTCTTGCAGGCCAT 60.610 55.000 5.01 0.00 0.00 4.40
451 452 1.228245 GGTGAGTTCTTGCAGGCCA 60.228 57.895 5.01 0.00 0.00 5.36
452 453 1.973812 GGGTGAGTTCTTGCAGGCC 60.974 63.158 0.00 0.00 0.00 5.19
453 454 1.973812 GGGGTGAGTTCTTGCAGGC 60.974 63.158 0.00 0.00 0.00 4.85
454 455 1.672356 CGGGGTGAGTTCTTGCAGG 60.672 63.158 0.00 0.00 0.00 4.85
455 456 2.328099 GCGGGGTGAGTTCTTGCAG 61.328 63.158 0.00 0.00 0.00 4.41
456 457 2.281484 GCGGGGTGAGTTCTTGCA 60.281 61.111 0.00 0.00 0.00 4.08
457 458 3.423154 CGCGGGGTGAGTTCTTGC 61.423 66.667 0.00 0.00 0.00 4.01
458 459 2.742372 CCGCGGGGTGAGTTCTTG 60.742 66.667 20.10 0.00 0.00 3.02
468 469 0.953003 TTTTAGTTTTGACCGCGGGG 59.047 50.000 31.76 18.33 40.11 5.73
469 470 1.334243 TGTTTTAGTTTTGACCGCGGG 59.666 47.619 31.76 11.88 0.00 6.13
470 471 2.759538 TGTTTTAGTTTTGACCGCGG 57.240 45.000 26.86 26.86 0.00 6.46
471 472 3.427243 TGTTGTTTTAGTTTTGACCGCG 58.573 40.909 0.00 0.00 0.00 6.46
472 473 4.664188 TCTGTTGTTTTAGTTTTGACCGC 58.336 39.130 0.00 0.00 0.00 5.68
473 474 6.548171 TCTTCTGTTGTTTTAGTTTTGACCG 58.452 36.000 0.00 0.00 0.00 4.79
474 475 7.648112 GGATCTTCTGTTGTTTTAGTTTTGACC 59.352 37.037 0.00 0.00 0.00 4.02
475 476 8.188139 TGGATCTTCTGTTGTTTTAGTTTTGAC 58.812 33.333 0.00 0.00 0.00 3.18
476 477 8.287439 TGGATCTTCTGTTGTTTTAGTTTTGA 57.713 30.769 0.00 0.00 0.00 2.69
477 478 8.807581 GTTGGATCTTCTGTTGTTTTAGTTTTG 58.192 33.333 0.00 0.00 0.00 2.44
478 479 7.700656 CGTTGGATCTTCTGTTGTTTTAGTTTT 59.299 33.333 0.00 0.00 0.00 2.43
479 480 7.148137 ACGTTGGATCTTCTGTTGTTTTAGTTT 60.148 33.333 0.00 0.00 0.00 2.66
480 481 6.317893 ACGTTGGATCTTCTGTTGTTTTAGTT 59.682 34.615 0.00 0.00 0.00 2.24
481 482 5.820947 ACGTTGGATCTTCTGTTGTTTTAGT 59.179 36.000 0.00 0.00 0.00 2.24
482 483 6.018262 TCACGTTGGATCTTCTGTTGTTTTAG 60.018 38.462 0.00 0.00 0.00 1.85
483 484 5.818336 TCACGTTGGATCTTCTGTTGTTTTA 59.182 36.000 0.00 0.00 0.00 1.52
484 485 4.638421 TCACGTTGGATCTTCTGTTGTTTT 59.362 37.500 0.00 0.00 0.00 2.43
485 486 4.196193 TCACGTTGGATCTTCTGTTGTTT 58.804 39.130 0.00 0.00 0.00 2.83
486 487 3.804036 TCACGTTGGATCTTCTGTTGTT 58.196 40.909 0.00 0.00 0.00 2.83
487 488 3.469008 TCACGTTGGATCTTCTGTTGT 57.531 42.857 0.00 0.00 0.00 3.32
488 489 3.362986 CGTTCACGTTGGATCTTCTGTTG 60.363 47.826 0.00 0.00 34.11 3.33
489 490 2.800544 CGTTCACGTTGGATCTTCTGTT 59.199 45.455 0.00 0.00 34.11 3.16
490 491 2.035449 TCGTTCACGTTGGATCTTCTGT 59.965 45.455 0.00 0.00 40.80 3.41
491 492 2.408704 GTCGTTCACGTTGGATCTTCTG 59.591 50.000 0.00 0.00 40.80 3.02
492 493 2.609737 GGTCGTTCACGTTGGATCTTCT 60.610 50.000 0.00 0.00 40.80 2.85
493 494 1.725164 GGTCGTTCACGTTGGATCTTC 59.275 52.381 0.00 0.00 40.80 2.87
494 495 1.792006 GGTCGTTCACGTTGGATCTT 58.208 50.000 0.00 0.00 40.80 2.40
495 496 0.388134 CGGTCGTTCACGTTGGATCT 60.388 55.000 0.00 0.00 40.80 2.75
496 497 0.387622 TCGGTCGTTCACGTTGGATC 60.388 55.000 0.00 0.00 40.80 3.36
497 498 0.032403 TTCGGTCGTTCACGTTGGAT 59.968 50.000 0.00 0.00 40.80 3.41
498 499 0.595567 CTTCGGTCGTTCACGTTGGA 60.596 55.000 0.00 0.00 40.80 3.53
499 500 1.554042 CCTTCGGTCGTTCACGTTGG 61.554 60.000 0.00 0.00 40.80 3.77
500 501 0.595567 TCCTTCGGTCGTTCACGTTG 60.596 55.000 0.00 0.00 40.80 4.10
501 502 0.102844 TTCCTTCGGTCGTTCACGTT 59.897 50.000 0.00 0.00 40.80 3.99
502 503 0.318445 CTTCCTTCGGTCGTTCACGT 60.318 55.000 0.00 0.00 40.80 4.49
503 504 1.615107 GCTTCCTTCGGTCGTTCACG 61.615 60.000 0.00 0.00 41.45 4.35
504 505 0.319641 AGCTTCCTTCGGTCGTTCAC 60.320 55.000 0.00 0.00 0.00 3.18
505 506 0.319555 CAGCTTCCTTCGGTCGTTCA 60.320 55.000 0.00 0.00 0.00 3.18
506 507 1.627550 GCAGCTTCCTTCGGTCGTTC 61.628 60.000 0.00 0.00 0.00 3.95
507 508 1.668151 GCAGCTTCCTTCGGTCGTT 60.668 57.895 0.00 0.00 0.00 3.85
508 509 2.048127 GCAGCTTCCTTCGGTCGT 60.048 61.111 0.00 0.00 0.00 4.34
509 510 2.097038 CAGCAGCTTCCTTCGGTCG 61.097 63.158 0.00 0.00 0.00 4.79
510 511 0.603975 AACAGCAGCTTCCTTCGGTC 60.604 55.000 0.00 0.00 0.00 4.79
511 512 0.179018 AAACAGCAGCTTCCTTCGGT 60.179 50.000 0.00 0.00 0.00 4.69
512 513 0.239347 CAAACAGCAGCTTCCTTCGG 59.761 55.000 0.00 0.00 0.00 4.30
513 514 1.069636 GTCAAACAGCAGCTTCCTTCG 60.070 52.381 0.00 0.00 0.00 3.79
514 515 1.268079 GGTCAAACAGCAGCTTCCTTC 59.732 52.381 0.00 0.00 0.00 3.46
515 516 1.322442 GGTCAAACAGCAGCTTCCTT 58.678 50.000 0.00 0.00 0.00 3.36
516 517 0.183492 TGGTCAAACAGCAGCTTCCT 59.817 50.000 0.00 0.00 0.00 3.36
517 518 1.032014 TTGGTCAAACAGCAGCTTCC 58.968 50.000 0.00 0.00 32.85 3.46
518 519 1.597937 CGTTGGTCAAACAGCAGCTTC 60.598 52.381 0.00 0.00 38.84 3.86
519 520 0.381801 CGTTGGTCAAACAGCAGCTT 59.618 50.000 0.00 0.00 38.84 3.74
520 521 0.748005 ACGTTGGTCAAACAGCAGCT 60.748 50.000 0.00 0.00 38.84 4.24
521 522 0.317020 GACGTTGGTCAAACAGCAGC 60.317 55.000 0.00 0.00 42.91 5.25
522 523 0.307760 GGACGTTGGTCAAACAGCAG 59.692 55.000 0.00 0.00 45.28 4.24
523 524 0.393132 TGGACGTTGGTCAAACAGCA 60.393 50.000 0.00 0.00 45.28 4.41
524 525 0.736053 TTGGACGTTGGTCAAACAGC 59.264 50.000 0.00 0.00 45.28 4.40
528 529 1.716826 GCCGTTGGACGTTGGTCAAA 61.717 55.000 0.00 0.00 45.28 2.69
529 530 2.181521 GCCGTTGGACGTTGGTCAA 61.182 57.895 0.00 0.00 45.28 3.18
530 531 2.589442 GCCGTTGGACGTTGGTCA 60.589 61.111 0.00 0.00 45.28 4.02
531 532 2.280592 AGCCGTTGGACGTTGGTC 60.281 61.111 0.00 0.00 40.58 4.02
532 533 2.590575 CAGCCGTTGGACGTTGGT 60.591 61.111 0.00 0.00 40.58 3.67
533 534 1.440938 TTTCAGCCGTTGGACGTTGG 61.441 55.000 0.00 0.00 40.58 3.77
534 535 0.591170 ATTTCAGCCGTTGGACGTTG 59.409 50.000 0.00 0.00 40.58 4.10
535 536 1.001815 CAATTTCAGCCGTTGGACGTT 60.002 47.619 0.00 0.00 40.58 3.99
536 537 0.591170 CAATTTCAGCCGTTGGACGT 59.409 50.000 0.00 0.00 40.58 4.34
537 538 0.871722 TCAATTTCAGCCGTTGGACG 59.128 50.000 0.00 0.00 42.11 4.79
538 539 2.922335 GCTTCAATTTCAGCCGTTGGAC 60.922 50.000 0.00 0.00 0.00 4.02
539 540 1.269448 GCTTCAATTTCAGCCGTTGGA 59.731 47.619 0.00 0.00 0.00 3.53
540 541 1.000385 TGCTTCAATTTCAGCCGTTGG 60.000 47.619 3.64 0.00 34.91 3.77
541 542 2.420628 TGCTTCAATTTCAGCCGTTG 57.579 45.000 3.64 0.00 34.91 4.10
542 543 3.451141 TTTGCTTCAATTTCAGCCGTT 57.549 38.095 3.64 0.00 34.91 4.44
543 544 3.578688 GATTTGCTTCAATTTCAGCCGT 58.421 40.909 3.64 0.00 34.91 5.68
544 545 2.595536 CGATTTGCTTCAATTTCAGCCG 59.404 45.455 3.64 0.00 34.91 5.52
545 546 2.925563 CCGATTTGCTTCAATTTCAGCC 59.074 45.455 3.64 0.00 34.91 4.85
546 547 2.925563 CCCGATTTGCTTCAATTTCAGC 59.074 45.455 0.00 0.00 36.49 4.26
547 548 3.514645 CCCCGATTTGCTTCAATTTCAG 58.485 45.455 0.00 0.00 0.00 3.02
548 549 2.233431 CCCCCGATTTGCTTCAATTTCA 59.767 45.455 0.00 0.00 0.00 2.69
549 550 2.495669 TCCCCCGATTTGCTTCAATTTC 59.504 45.455 0.00 0.00 0.00 2.17
550 551 2.233676 GTCCCCCGATTTGCTTCAATTT 59.766 45.455 0.00 0.00 0.00 1.82
551 552 1.824852 GTCCCCCGATTTGCTTCAATT 59.175 47.619 0.00 0.00 0.00 2.32
552 553 1.272425 TGTCCCCCGATTTGCTTCAAT 60.272 47.619 0.00 0.00 0.00 2.57
553 554 0.111446 TGTCCCCCGATTTGCTTCAA 59.889 50.000 0.00 0.00 0.00 2.69
554 555 0.111446 TTGTCCCCCGATTTGCTTCA 59.889 50.000 0.00 0.00 0.00 3.02
555 556 0.526211 GTTGTCCCCCGATTTGCTTC 59.474 55.000 0.00 0.00 0.00 3.86
556 557 0.898326 GGTTGTCCCCCGATTTGCTT 60.898 55.000 0.00 0.00 0.00 3.91
557 558 1.304134 GGTTGTCCCCCGATTTGCT 60.304 57.895 0.00 0.00 0.00 3.91
558 559 3.284336 GGTTGTCCCCCGATTTGC 58.716 61.111 0.00 0.00 0.00 3.68
565 566 2.926242 TCTCCACGGTTGTCCCCC 60.926 66.667 0.00 0.00 0.00 5.40
566 567 2.346365 GTCTCCACGGTTGTCCCC 59.654 66.667 0.00 0.00 0.00 4.81
567 568 2.048503 CGTCTCCACGGTTGTCCC 60.049 66.667 0.00 0.00 42.73 4.46
568 569 1.080705 CTCGTCTCCACGGTTGTCC 60.081 63.158 0.00 0.00 46.70 4.02
569 570 0.031721 AACTCGTCTCCACGGTTGTC 59.968 55.000 0.00 0.00 46.70 3.18
570 571 0.249322 CAACTCGTCTCCACGGTTGT 60.249 55.000 15.05 3.29 46.70 3.32
571 572 0.944311 CCAACTCGTCTCCACGGTTG 60.944 60.000 15.79 15.79 46.16 3.77
572 573 1.366366 CCAACTCGTCTCCACGGTT 59.634 57.895 0.00 0.00 46.70 4.44
573 574 3.048602 CCAACTCGTCTCCACGGT 58.951 61.111 0.00 0.00 46.70 4.83
574 575 1.592400 TAGCCAACTCGTCTCCACGG 61.592 60.000 0.00 0.00 46.70 4.94
576 577 1.272769 ACTTAGCCAACTCGTCTCCAC 59.727 52.381 0.00 0.00 0.00 4.02
577 578 1.629043 ACTTAGCCAACTCGTCTCCA 58.371 50.000 0.00 0.00 0.00 3.86
578 579 2.029290 TGAACTTAGCCAACTCGTCTCC 60.029 50.000 0.00 0.00 0.00 3.71
579 580 3.299340 TGAACTTAGCCAACTCGTCTC 57.701 47.619 0.00 0.00 0.00 3.36
580 581 3.963428 ATGAACTTAGCCAACTCGTCT 57.037 42.857 0.00 0.00 0.00 4.18
581 582 7.438459 ACATATAATGAACTTAGCCAACTCGTC 59.562 37.037 0.00 0.00 0.00 4.20
582 583 7.272978 ACATATAATGAACTTAGCCAACTCGT 58.727 34.615 0.00 0.00 0.00 4.18
583 584 7.715265 ACATATAATGAACTTAGCCAACTCG 57.285 36.000 0.00 0.00 0.00 4.18
706 731 1.754234 GGAGGACTTACCGGCGGTA 60.754 63.158 33.42 33.42 44.74 4.02
952 979 8.731901 TCCTGGCTGAGAGATCTGTATATATAT 58.268 37.037 0.00 0.00 0.00 0.86
953 980 8.107196 TCCTGGCTGAGAGATCTGTATATATA 57.893 38.462 0.00 0.00 0.00 0.86
954 981 6.979418 TCCTGGCTGAGAGATCTGTATATAT 58.021 40.000 0.00 0.00 0.00 0.86
955 982 6.394345 TCCTGGCTGAGAGATCTGTATATA 57.606 41.667 0.00 0.00 0.00 0.86
956 983 5.268131 TCCTGGCTGAGAGATCTGTATAT 57.732 43.478 0.00 0.00 0.00 0.86
957 984 4.731313 TCCTGGCTGAGAGATCTGTATA 57.269 45.455 0.00 0.00 0.00 1.47
958 985 3.609256 TCCTGGCTGAGAGATCTGTAT 57.391 47.619 0.00 0.00 0.00 2.29
959 986 3.609256 ATCCTGGCTGAGAGATCTGTA 57.391 47.619 0.00 0.00 0.00 2.74
960 987 2.475339 ATCCTGGCTGAGAGATCTGT 57.525 50.000 0.00 0.00 0.00 3.41
2092 2219 0.390866 ACTCTGCAGCCATGAGTTCG 60.391 55.000 9.47 0.00 37.76 3.95
2135 2262 3.508840 GGCCAGCCAACGAATCCG 61.509 66.667 3.12 0.00 37.69 4.18
2280 2407 7.938140 TTACTTCAATTCCAGGGATTTACAG 57.062 36.000 0.00 0.00 0.00 2.74
2463 2590 2.794103 CCATGTGTGGTTGATTCCTGA 58.206 47.619 0.00 0.00 40.83 3.86
2752 5243 9.534565 GAGCTATCAGAAACTACAATATTCACA 57.465 33.333 0.00 0.00 0.00 3.58
2934 5460 0.170116 CAACACCAACACGCACAAGT 59.830 50.000 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.